Psyllid ID: psy2907

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------
Protein Sequence
MWNMMCDVMPTISEDVVPGQRGSLFSGEDANFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIAASLPQVGRC
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mwnmmcdvmptisedvvpgqrgslfsgedaNFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIAAslpqvgrc
Flexible Loop (DISEMBL)
MWNMMCDVMPTISEDVVPGQRGSLFSGEDANFEQLMVTMFDEKDKLLDNLRETQDrlsetsgklsmveKERDSLQRqiaaslpqvgrc
Low Complexity Region (SEG)
MWNMMCDVMPTISEDVVPGQRGSLFSGEDANFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIAASLPQVGRC
Disordered region (IsUnstruct)
*******************************FEQLMVTMF************************************************
Disordered Region (DISOPRED)
MWNMMCDVM*************************LMVTMFDEKDKLLDNLRET********************LQRQIAASLPQVGRC
Disordered Region (DISEMBL)
MWNMMCDVMPTISEDVVPGQRGSLFSGEDANFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIAA********
Disordered Region (DISPRO)
*****************************ANFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIAASLP*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MWNMMCDVMPTISEDVVPGQRGSLFSGEDANFEQLMVTMFDExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIAASLPQVGRC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	88	2.2.26 [Sep-21-2011]
Q13136	1202	Liprin-alpha-1 OS=Homo sa	yes	N/A	0.920	0.067	0.534	1e-15
Q91Z79	1192	Liprin-alpha-3 OS=Rattus	no	N/A	0.886	0.065	0.518	4e-15
P60469	1043	Liprin-alpha-3 OS=Mus mus	no	N/A	0.886	0.074	0.506	1e-14
O75145	1194	Liprin-alpha-3 OS=Homo sa	no	N/A	0.886	0.065	0.506	1e-14
Q8BSS9	1257	Liprin-alpha-2 OS=Mus mus	no	N/A	0.920	0.064	0.542	5e-14
O75334	1257	Liprin-alpha-2 OS=Homo sa	no	N/A	0.920	0.064	0.542	5e-14
Q21049	1139	Liprin-alpha OS=Caenorhab	yes	N/A	0.920	0.071	0.406	3e-07

>sp|Q13136|LIPA1_HUMAN Liprin-alpha-1 OS=Homo sapiens GN=PPFIA1 PE=1 SV=1

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 58/88 (65%), Gaps = 7/88 (7%)

Query: 4  MMCDVMPTISEDVVPGQRGSLFSGE-------DANFEQLMVTMFDEKDKLLDNLRETQDR 56
          MMC+VMPTISE   P   G             D++FEQLMV+M +E+D+LLD LRETQ+ 
Sbjct: 1  MMCEVMPTISEAEGPPGGGGGHGSGSPSQPDADSHFEQLMVSMLEERDRLLDTLRETQET 60

Query: 57 LSETSGKLSMVEKERDSLQRQIAASLPQ 84
          L+ T GKL  V  ERDSLQRQ+  +LPQ
Sbjct: 61 LALTQGKLHEVGHERDSLQRQLNTALPQ 88

May regulate the disassembly of focal adhesions. May localize receptor-like tyrosine phosphatases type 2A at specific sites on the plasma membrane, possibly regulating their interaction with the extracellular environment and their association with substrates.
Homo sapiens (taxid: 9606)

>sp|Q91Z79|LIPA3_RAT Liprin-alpha-3 OS=Rattus norvegicus GN=Ppfia3 PE=1 SV=2

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/83 (51%), Positives = 58/83 (69%), Gaps = 5/83 (6%)

Query: 4  MMCDVMPTISEDVVPGQRGSLFSGEDAN--FEQLMVTMFDEKDKLLDNLRETQDRLSETS 61
          MMC+VMPTISED   G+RGS    +DA    E+LMVTM  E+++LL+ LRE QD L+   
Sbjct: 1  MMCEVMPTISED---GRRGSALGPDDAGGELERLMVTMLTERERLLETLREAQDGLATAQ 57

Query: 62 GKLSMVEKERDSLQRQIAASLPQ 84
           +L  +  E+DSLQRQ++ +LPQ
Sbjct: 58 LRLRELGHEKDSLQRQLSIALPQ 80

May regulate the disassembly of focal adhesions. May localize receptor-like tyrosine phosphatases type 2A at specific sites on the plasma membrane, possibly regulating their interaction with the extracellular environment and their association with substrates.

Rattus norvegicus (taxid: 10116)

>sp|P60469|LIPA3_MOUSE Liprin-alpha-3 OS=Mus musculus GN=Ppfia3 PE=1 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 58/83 (69%), Gaps = 5/83 (6%)

Query: 4  MMCDVMPTISEDVVPGQRGSLFSGEDAN--FEQLMVTMFDEKDKLLDNLRETQDRLSETS 61
          MMC+VMPTISED   G+RGS    ++A    E+LMVTM  E+++LL+ LRE QD L+   
Sbjct: 1  MMCEVMPTISED---GRRGSALGPDEAGGELERLMVTMLTERERLLETLREAQDGLATAQ 57

Query: 62 GKLSMVEKERDSLQRQIAASLPQ 84
           +L  +  E+DSLQRQ++ +LPQ
Sbjct: 58 LRLRELGHEKDSLQRQLSIALPQ 80

May regulate the disassembly of focal adhesions. May localize receptor-like tyrosine phosphatases type 2A at specific sites on the plasma membrane, possibly regulating their interaction with the extracellular environment and their association with substrates.

Mus musculus (taxid: 10090)

>sp|O75145|LIPA3_HUMAN Liprin-alpha-3 OS=Homo sapiens GN=PPFIA3 PE=1 SV=3

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 58/83 (69%), Gaps = 5/83 (6%)

Query: 4  MMCDVMPTISEDVVPGQRGSLFSGEDAN--FEQLMVTMFDEKDKLLDNLRETQDRLSETS 61
          MMC+VMPTISED   G+RGS    ++A    E+LMVTM  E+++LL+ LRE QD L+   
Sbjct: 1  MMCEVMPTISED---GRRGSALGPDEAGGELERLMVTMLTERERLLETLREAQDGLATAQ 57

Query: 62 GKLSMVEKERDSLQRQIAASLPQ 84
           +L  +  E+DSLQRQ++ +LPQ
Sbjct: 58 LRLRELGHEKDSLQRQLSIALPQ 80

May regulate the disassembly of focal adhesions. May localize receptor-like tyrosine phosphatases type 2A at specific sites on the plasma membrane, possibly regulating their interaction with the extracellular environment and their association with substrates.

Homo sapiens (taxid: 9606)

>sp|Q8BSS9|LIPA2_MOUSE Liprin-alpha-2 OS=Mus musculus GN=Ppfia2 PE=1 SV=2

 Score = 76.6 bits (187), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/83 (54%), Positives = 58/83 (69%), Gaps = 2/83 (2%)

Query: 4  MMCDVMPTISED--VVPGQRGSLFSGEDANFEQLMVTMFDEKDKLLDNLRETQDRLSETS 61
          MMC+VMPTI+ED  +      S  S  D++FEQLMV M DE+D+LLD LRETQ+ LS   
Sbjct: 1  MMCEVMPTINEDTPMSQRGSQSSGSDSDSHFEQLMVNMLDERDRLLDTLRETQESLSLAQ 60

Query: 62 GKLSMVEKERDSLQRQIAASLPQ 84
           +L  V  +RDSLQRQ+ ++LPQ
Sbjct: 61 QRLQDVIYDRDSLQRQLNSALPQ 83

Alters PTPRF cellular localization and induces PTPRF clustering. May regulate the disassembly of focal adhesions. May localize receptor-like tyrosine phosphatases type 2A at specific sites on the plasma membrane, possibly regulating their interaction with the extracellular environment and their association with substrates.

Mus musculus (taxid: 10090)

>sp|O75334|LIPA2_HUMAN Liprin-alpha-2 OS=Homo sapiens GN=PPFIA2 PE=1 SV=2

 Score = 76.6 bits (187), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/83 (54%), Positives = 58/83 (69%), Gaps = 2/83 (2%)

Query: 4  MMCDVMPTISED--VVPGQRGSLFSGEDANFEQLMVTMFDEKDKLLDNLRETQDRLSETS 61
          MMC+VMPTI+ED  +      S  S  D++FEQLMV M DE+D+LLD LRETQ+ LS   
Sbjct: 1  MMCEVMPTINEDTPMSQRGSQSSGSDSDSHFEQLMVNMLDERDRLLDTLRETQESLSLAQ 60

Query: 62 GKLSMVEKERDSLQRQIAASLPQ 84
           +L  V  +RDSLQRQ+ ++LPQ
Sbjct: 61 QRLQDVIYDRDSLQRQLNSALPQ 83

Alters PTPRF cellular localization and induces PTPRF clustering. May regulate the disassembly of focal adhesions. May localize receptor-like tyrosine phosphatases type 2A at specific sites on the plasma membrane, possibly regulating their interaction with the extracellular environment and their association with substrates.

Homo sapiens (taxid: 9606)

>sp|Q21049|LIPA_CAEEL Liprin-alpha OS=Caenorhabditis elegans GN=syd-2 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 5/86 (5%)

Query: 3  NMMCDVMPTISEDVVPGQRGSLFSGEDA-NFEQLMVTMFDEKDKLLDNLRETQDRLSETS 61
          N+ CD+MPTISED V    G +    D  N EQLM+ M +++DKL + L   + +L    
Sbjct: 7  NINCDIMPTISEDGVDNG-GPIDEPSDRDNIEQLMMNMLEDRDKLQEQLENYKVQLENAG 65

Query: 62 GKLSMVEKERDSLQRQI---AASLPQ 84
           +   VEKERD ++RQ      +LPQ
Sbjct: 66 LRTKEVEKERDMMKRQFEVHTQNLPQ 91

May play a role in regulating the structure of the neuronal region, called the active zone, from which synaptic vesicles send neurotransmitter signals across the synapse.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
195155717	1197	GL25785 [Drosophila persimilis] gi|19411	0.943	0.069	0.773	7e-30
198476595	1197	GA10833 [Drosophila pseudoobscura pseudo	0.943	0.069	0.773	7e-30
189234195	1172	PREDICTED: similar to Liprin-alpha CG111	0.943	0.070	0.773	7e-30
195385402	1194	GJ12463 [Drosophila virilis] gi|19414785	0.943	0.069	0.773	9e-30
195577114	1201	GD23428 [Drosophila simulans] gi|1941904	0.943	0.069	0.761	3e-29
195338730	1201	GM16210 [Drosophila sechellia] gi|194129	0.943	0.069	0.761	3e-29
442626414	1214	Liprin-alpha, isoform E [Drosophila mela	0.943	0.068	0.761	3e-29
24582308	1201	Liprin-alpha, isoform A [Drosophila mela	0.943	0.069	0.761	3e-29
195471690	1202	GE14088 [Drosophila yakuba] gi|194174236	0.943	0.069	0.761	3e-29
442626412	1205	Liprin-alpha, isoform D [Drosophila mela	0.943	0.068	0.761	3e-29

>gi|195155717|ref|XP_002018747.1| GL25785 [Drosophila persimilis] gi|194114900|gb|EDW36943.1| GL25785 [Drosophila persimilis]

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 65/84 (77%), Positives = 72/84 (85%), Gaps = 1/84 (1%)

Query: 1  MWNMMCDVMPTISEDVVPGQRGSLFSGEDANFEQLMVTMFDEKDKLLDNLRETQDRLSET 60
          MWNMMCDVMPTISED +  QR S FSGEDANFEQLMV+M DE+DKL+D+LRE Q+RL ET
Sbjct: 1  MWNMMCDVMPTISEDSI-SQRSSQFSGEDANFEQLMVSMLDERDKLMDSLREAQERLGET 59

Query: 61 SGKLSMVEKERDSLQRQIAASLPQ 84
           GKL  VEKERDSLQRQI A+LPQ
Sbjct: 60 EGKLRDVEKERDSLQRQINANLPQ 83

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198476595|ref|XP_001357406.2| GA10833 [Drosophila pseudoobscura pseudoobscura] gi|198137769|gb|EAL34475.2| GA10833 [Drosophila pseudoobscura pseudoobscura]

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 65/84 (77%), Positives = 72/84 (85%), Gaps = 1/84 (1%)

Query: 1  MWNMMCDVMPTISEDVVPGQRGSLFSGEDANFEQLMVTMFDEKDKLLDNLRETQDRLSET 60
          MWNMMCDVMPTISED +  QR S FSGEDANFEQLMV+M DE+DKL+D+LRE Q+RL ET
Sbjct: 1  MWNMMCDVMPTISEDSI-SQRSSQFSGEDANFEQLMVSMLDERDKLMDSLREAQERLGET 59

Query: 61 SGKLSMVEKERDSLQRQIAASLPQ 84
           GKL  VEKERDSLQRQI A+LPQ
Sbjct: 60 EGKLRDVEKERDSLQRQINANLPQ 83

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189234195|ref|XP_970345.2| PREDICTED: similar to Liprin-alpha CG11199-PA [Tribolium castaneum]

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 65/84 (77%), Positives = 73/84 (86%), Gaps = 1/84 (1%)

Query: 1  MWNMMCDVMPTISEDVVPGQRGSLFSGEDANFEQLMVTMFDEKDKLLDNLRETQDRLSET 60
          MWNMMCDVMPTISED +  QR S FSGEDANFEQLMV+M DE+DKL+D+LRETQ+RL ET
Sbjct: 1  MWNMMCDVMPTISEDSI-SQRSSQFSGEDANFEQLMVSMLDERDKLMDSLRETQERLGET 59

Query: 61 SGKLSMVEKERDSLQRQIAASLPQ 84
            KL+ VEKERDSL RQIAA+LPQ
Sbjct: 60 EMKLADVEKERDSLHRQIAANLPQ 83

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195385402|ref|XP_002051395.1| GJ12463 [Drosophila virilis] gi|194147852|gb|EDW63550.1| GJ12463 [Drosophila virilis]

 Score =  134 bits (336), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 65/84 (77%), Positives = 72/84 (85%), Gaps = 1/84 (1%)

Query: 1  MWNMMCDVMPTISEDVVPGQRGSLFSGEDANFEQLMVTMFDEKDKLLDNLRETQDRLSET 60
          MWNMMCDVMPTISED +  QR S FSGEDANFEQLMV+M DE+DKL+D+LRE Q+RL ET
Sbjct: 1  MWNMMCDVMPTISEDSI-SQRSSQFSGEDANFEQLMVSMLDERDKLMDSLREAQERLVET 59

Query: 61 SGKLSMVEKERDSLQRQIAASLPQ 84
           GKL  VEKERDSLQRQI A+LPQ
Sbjct: 60 EGKLRDVEKERDSLQRQINANLPQ 83

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195577114|ref|XP_002078418.1| GD23428 [Drosophila simulans] gi|194190427|gb|EDX04003.1| GD23428 [Drosophila simulans]

 Score =  132 bits (331), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 64/84 (76%), Positives = 72/84 (85%), Gaps = 1/84 (1%)

Query: 1  MWNMMCDVMPTISEDVVPGQRGSLFSGEDANFEQLMVTMFDEKDKLLDNLRETQDRLSET 60
          MWNMMCDVMPTISED +  QR S FSGEDANFEQLMV+M DE+DKL+D+LRE Q+RL+ET
Sbjct: 1  MWNMMCDVMPTISEDSI-SQRSSQFSGEDANFEQLMVSMLDERDKLMDSLREAQERLNET 59

Query: 61 SGKLSMVEKERDSLQRQIAASLPQ 84
            KL  VEKERDSLQRQI A+LPQ
Sbjct: 60 ENKLRDVEKERDSLQRQINANLPQ 83

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195338730|ref|XP_002035977.1| GM16210 [Drosophila sechellia] gi|194129857|gb|EDW51900.1| GM16210 [Drosophila sechellia]

 Score =  132 bits (331), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 64/84 (76%), Positives = 72/84 (85%), Gaps = 1/84 (1%)

Query: 1  MWNMMCDVMPTISEDVVPGQRGSLFSGEDANFEQLMVTMFDEKDKLLDNLRETQDRLSET 60
          MWNMMCDVMPTISED +  QR S FSGEDANFEQLMV+M DE+DKL+D+LRE Q+RL+ET
Sbjct: 1  MWNMMCDVMPTISEDSI-SQRSSQFSGEDANFEQLMVSMLDERDKLMDSLREAQERLNET 59

Query: 61 SGKLSMVEKERDSLQRQIAASLPQ 84
            KL  VEKERDSLQRQI A+LPQ
Sbjct: 60 ENKLRDVEKERDSLQRQINANLPQ 83

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442626414|ref|NP_001260155.1| Liprin-alpha, isoform E [Drosophila melanogaster] gi|440213455|gb|AGB92691.1| Liprin-alpha, isoform E [Drosophila melanogaster]

 Score =  132 bits (331), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 64/84 (76%), Positives = 72/84 (85%), Gaps = 1/84 (1%)

Query: 1  MWNMMCDVMPTISEDVVPGQRGSLFSGEDANFEQLMVTMFDEKDKLLDNLRETQDRLSET 60
          MWNMMCDVMPTISED +  QR S FSGEDANFEQLMV+M DE+DKL+D+LRE Q+RL+ET
Sbjct: 1  MWNMMCDVMPTISEDSI-SQRSSQFSGEDANFEQLMVSMLDERDKLMDSLREAQERLNET 59

Query: 61 SGKLSMVEKERDSLQRQIAASLPQ 84
            KL  VEKERDSLQRQI A+LPQ
Sbjct: 60 ENKLRDVEKERDSLQRQINANLPQ 83

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24582308|ref|NP_609067.2| Liprin-alpha, isoform A [Drosophila melanogaster] gi|24582310|ref|NP_723208.1| Liprin-alpha, isoform B [Drosophila melanogaster] gi|22945797|gb|AAF52430.2| Liprin-alpha, isoform A [Drosophila melanogaster] gi|22945798|gb|AAN10596.1| Liprin-alpha, isoform B [Drosophila melanogaster] gi|28416351|gb|AAO42648.1| LD33094p [Drosophila melanogaster] gi|220947300|gb|ACL86193.1| Liprin-alpha-PA [synthetic construct] gi|220956770|gb|ACL90928.1| Liprin-alpha-PA [synthetic construct]

 Score =  132 bits (331), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 64/84 (76%), Positives = 72/84 (85%), Gaps = 1/84 (1%)

Query: 1  MWNMMCDVMPTISEDVVPGQRGSLFSGEDANFEQLMVTMFDEKDKLLDNLRETQDRLSET 60
          MWNMMCDVMPTISED +  QR S FSGEDANFEQLMV+M DE+DKL+D+LRE Q+RL+ET
Sbjct: 1  MWNMMCDVMPTISEDSI-SQRSSQFSGEDANFEQLMVSMLDERDKLMDSLREAQERLNET 59

Query: 61 SGKLSMVEKERDSLQRQIAASLPQ 84
            KL  VEKERDSLQRQI A+LPQ
Sbjct: 60 ENKLRDVEKERDSLQRQINANLPQ 83

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195471690|ref|XP_002088135.1| GE14088 [Drosophila yakuba] gi|194174236|gb|EDW87847.1| GE14088 [Drosophila yakuba]

 Score =  132 bits (331), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 64/84 (76%), Positives = 71/84 (84%), Gaps = 1/84 (1%)

Query: 1  MWNMMCDVMPTISEDVVPGQRGSLFSGEDANFEQLMVTMFDEKDKLLDNLRETQDRLSET 60
          MWNMMCDVMPTISED +  QR S FSGEDANFEQLMV+M DE+DKL+D+LRE Q+RL ET
Sbjct: 1  MWNMMCDVMPTISEDSI-SQRSSQFSGEDANFEQLMVSMLDERDKLMDSLREAQERLGET 59

Query: 61 SGKLSMVEKERDSLQRQIAASLPQ 84
            KL  VEKERDSLQRQI A+LPQ
Sbjct: 60 ENKLHDVEKERDSLQRQINANLPQ 83

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442626412|ref|NP_001260154.1| Liprin-alpha, isoform D [Drosophila melanogaster] gi|440213454|gb|AGB92690.1| Liprin-alpha, isoform D [Drosophila melanogaster]

 Score =  132 bits (331), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 64/84 (76%), Positives = 72/84 (85%), Gaps = 1/84 (1%)

Query: 1  MWNMMCDVMPTISEDVVPGQRGSLFSGEDANFEQLMVTMFDEKDKLLDNLRETQDRLSET 60
          MWNMMCDVMPTISED +  QR S FSGEDANFEQLMV+M DE+DKL+D+LRE Q+RL+ET
Sbjct: 1  MWNMMCDVMPTISEDSI-SQRSSQFSGEDANFEQLMVSMLDERDKLMDSLREAQERLNET 59

Query: 61 SGKLSMVEKERDSLQRQIAASLPQ 84
            KL  VEKERDSLQRQI A+LPQ
Sbjct: 60 ENKLRDVEKERDSLQRQINANLPQ 83

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
FB|FBgn0046704	1201	Liprin-alpha "Liprin-alpha" [D	0.943	0.069	0.761	1.3e-27
UNIPROTKB|F8VU88	121	PPFIA2 "Liprin-alpha-2" [Homo	0.920	0.669	0.590	3.1e-19
UNIPROTKB|O75334	1257	PPFIA2 "Liprin-alpha-2" [Homo	0.920	0.064	0.590	8.9e-18
MGI|MGI:2443834	1257	Ppfia2 "protein tyrosine phosp	0.920	0.064	0.590	8.9e-18
ZFIN|ZDB-GENE-070720-14	1211	ppfia4 "protein tyrosine phosp	0.909	0.066	0.607	3.7e-17
UNIPROTKB|Q13136	1202	PPFIA1 "Liprin-alpha-1" [Homo	0.920	0.067	0.568	1.6e-16
ZFIN|ZDB-GENE-080214-4	1221	zgc:171298 "zgc:171298" [Danio	0.920	0.066	0.517	5e-15
RGD|620054	1192	Ppfia3 "protein tyrosine phosp	0.886	0.065	0.518	3.5e-14
MGI|MGI:1924037	1043	Ppfia3 "protein tyrosine phosp	0.886	0.074	0.506	7.8e-14
UNIPROTKB|O75145	1194	PPFIA3 "Liprin-alpha-3" [Homo	0.886	0.065	0.506	9.3e-14

FB|FBgn0046704 Liprin-alpha "Liprin-alpha" [Drosophila melanogaster (taxid:7227)]

 Score = 322 (118.4 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 64/84 (76%), Positives = 72/84 (85%)

Query:     1 MWNMMCDVMPTISEDVVPGQRGSLFSGEDANFEQLMVTMFDEKDKLLDNLRETQDRLSET 60
             MWNMMCDVMPTISED +  QR S FSGEDANFEQLMV+M DE+DKL+D+LRE Q+RL+ET
Sbjct:     1 MWNMMCDVMPTISEDSI-SQRSSQFSGEDANFEQLMVSMLDERDKLMDSLREAQERLNET 59

Query:    61 SGKLSMVEKERDSLQRQIAASLPQ 84
               KL  VEKERDSLQRQI A+LPQ
Sbjct:    60 ENKLRDVEKERDSLQRQINANLPQ 83

GO:0008594 "photoreceptor cell morphogenesis" evidence=IMP

GO:0045202 "synapse" evidence=IDA

GO:0007416 "synapse assembly" evidence=IMP

GO:0048490 "anterograde synaptic vesicle transport" evidence=IMP

GO:0045467 "R7 cell development" evidence=IMP

GO:0031290 "retinal ganglion cell axon guidance" evidence=IMP

GO:0007412 "axon target recognition" evidence=IMP

GO:0048786 "presynaptic active zone" evidence=IDA

GO:0007411 "axon guidance" evidence=IMP

GO:0048841 "regulation of axon extension involved in axon guidance" evidence=IMP

GO:0048675 "axon extension" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0043234 "protein complex" evidence=IDA

GO:0051124 "synaptic growth at neuromuscular junction" evidence=IMP

GO:0005925 "focal adhesion" evidence=IDA

UNIPROTKB|F8VU88 PPFIA2 "Liprin-alpha-2" [Homo sapiens (taxid:9606)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 49/83 (59%), Positives = 61/83 (73%)

Query:     4 MMCDVMPTISEDVVPGQRGSLFSGEDAN--FEQLMVTMFDEKDKLLDNLRETQDRLSETS 61
             MMC+VMPTI+ED    QRGS  SG D++  FEQLMV M DE+D+LLD LRETQ+ LS   
Sbjct:     1 MMCEVMPTINEDTPMSQRGSQSSGSDSDSHFEQLMVNMLDERDRLLDTLRETQESLSLAQ 60

Query:    62 GKLSMVEKERDSLQRQIAASLPQ 84
              +L  V  +RDSLQRQ+ ++LPQ
Sbjct:    61 QRLQDVIYDRDSLQRQLNSALPQ 83

GO:0045202 "synapse" evidence=IEA

UNIPROTKB|O75334 PPFIA2 "Liprin-alpha-2" [Homo sapiens (taxid:9606)]

 Score = 230 (86.0 bits), Expect = 8.9e-18, P = 8.9e-18
 Identities = 49/83 (59%), Positives = 61/83 (73%)

Query:     4 MMCDVMPTISEDVVPGQRGSLFSGEDAN--FEQLMVTMFDEKDKLLDNLRETQDRLSETS 61
             MMC+VMPTI+ED    QRGS  SG D++  FEQLMV M DE+D+LLD LRETQ+ LS   
Sbjct:     1 MMCEVMPTINEDTPMSQRGSQSSGSDSDSHFEQLMVNMLDERDRLLDTLRETQESLSLAQ 60

Query:    62 GKLSMVEKERDSLQRQIAASLPQ 84
              +L  V  +RDSLQRQ+ ++LPQ
Sbjct:    61 QRLQDVIYDRDSLQRQLNSALPQ 83

GO:0045202 "synapse" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0007160 "cell-matrix adhesion" evidence=TAS

MGI|MGI:2443834 Ppfia2 "protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2" [Mus musculus (taxid:10090)]

 Score = 230 (86.0 bits), Expect = 8.9e-18, P = 8.9e-18
 Identities = 49/83 (59%), Positives = 61/83 (73%)

Query:     4 MMCDVMPTISEDVVPGQRGSLFSGEDAN--FEQLMVTMFDEKDKLLDNLRETQDRLSETS 61
             MMC+VMPTI+ED    QRGS  SG D++  FEQLMV M DE+D+LLD LRETQ+ LS   
Sbjct:     1 MMCEVMPTINEDTPMSQRGSQSSGSDSDSHFEQLMVNMLDERDRLLDTLRETQESLSLAQ 60

Query:    62 GKLSMVEKERDSLQRQIAASLPQ 84
              +L  V  +RDSLQRQ+ ++LPQ
Sbjct:    61 QRLQDVIYDRDSLQRQLNSALPQ 83

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0045202 "synapse" evidence=IDA

ZFIN|ZDB-GENE-070720-14 ppfia4 "protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4" [Danio rerio (taxid:7955)]

 Score = 224 (83.9 bits), Expect = 3.7e-17, P = 3.7e-17
 Identities = 51/84 (60%), Positives = 63/84 (75%)

Query:     4 MMCDVMPTISE-DVVPGQRGSLFSGEDA--NFEQLMVTMFDEKDKLLDNLRETQDRLSET 60
             MMC+VMPTI+E D V  QRGS  +G DA  NFEQLMV M DE+DKLL++LRETQ+ L ++
Sbjct:     1 MMCEVMPTINEGDSVSSQRGSQ-NGTDAESNFEQLMVNMLDERDKLLESLRETQETLIQS 59

Query:    61 SGKLSMVEKERDSLQRQIAASLPQ 84
               KL  V  ERD LQRQ+ ++LPQ
Sbjct:    60 QTKLQDVLHERDVLQRQLNSALPQ 83

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q13136 PPFIA1 "Liprin-alpha-1" [Homo sapiens (taxid:9606)]

 Score = 218 (81.8 bits), Expect = 1.6e-16, P = 1.6e-16
 Identities = 50/88 (56%), Positives = 62/88 (70%)

Query:     4 MMCDVMPTISE-DVVPGQRGSLFSGE------DANFEQLMVTMFDEKDKLLDNLRETQDR 56
             MMC+VMPTISE +  PG  G   SG       D++FEQLMV+M +E+D+LLD LRETQ+ 
Sbjct:     1 MMCEVMPTISEAEGPPGGGGGHGSGSPSQPDADSHFEQLMVSMLEERDRLLDTLRETQET 60

Query:    57 LSETSGKLSMVEKERDSLQRQIAASLPQ 84
             L+ T GKL  V  ERDSLQRQ+  +LPQ
Sbjct:    61 LALTQGKLHEVGHERDSLQRQLNTALPQ 88

GO:0005737 "cytoplasm" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

GO:0007160 "cell-matrix adhesion" evidence=TAS

ZFIN|ZDB-GENE-080214-4 zgc:171298 "zgc:171298" [Danio rerio (taxid:7955)]

 Score = 204 (76.9 bits), Expect = 5.0e-15, P = 5.0e-15
 Identities = 45/87 (51%), Positives = 58/87 (66%)

Query:     4 MMCDVMPTISEDVVPGQRGSLFSGE------DANFEQLMVTMFDEKDKLLDNLRETQDRL 57
             MMC+VMPTISE  V    G+L SG       + +FE LMV+M +E+D+LLD LRETQ+ L
Sbjct:     1 MMCEVMPTISEAEVCSAGGALGSGSPVQTDSEGHFESLMVSMLEERDRLLDTLRETQENL 60

Query:    58 SETSGKLSMVEKERDSLQRQIAASLPQ 84
                  KL  +  ERDSLQRQ+ ++LPQ
Sbjct:    61 CVAQSKLHEISHERDSLQRQLNSALPQ 87

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

RGD|620054 Ppfia3 "protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3" [Rattus norvegicus (taxid:10116)]

 Score = 196 (74.1 bits), Expect = 3.5e-14, P = 3.5e-14
 Identities = 43/83 (51%), Positives = 58/83 (69%)

Query:     4 MMCDVMPTISEDVVPGQRGSLFSGEDAN--FEQLMVTMFDEKDKLLDNLRETQDRLSETS 61
             MMC+VMPTISED   G+RGS    +DA    E+LMVTM  E+++LL+ LRE QD L+   
Sbjct:     1 MMCEVMPTISED---GRRGSALGPDDAGGELERLMVTMLTERERLLETLREAQDGLATAQ 57

Query:    62 GKLSMVEKERDSLQRQIAASLPQ 84
              +L  +  E+DSLQRQ++ +LPQ
Sbjct:    58 LRLRELGHEKDSLQRQLSIALPQ 80

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0007269 "neurotransmitter secretion" evidence=IMP

GO:0009986 "cell surface" evidence=IEA

GO:0048172 "regulation of short-term neuronal synaptic plasticity" evidence=IMP

MGI|MGI:1924037 Ppfia3 "protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3" [Mus musculus (taxid:10090)]

 Score = 192 (72.6 bits), Expect = 7.8e-14, P = 7.8e-14
 Identities = 42/83 (50%), Positives = 58/83 (69%)

Query:     4 MMCDVMPTISEDVVPGQRGSLFSGEDAN--FEQLMVTMFDEKDKLLDNLRETQDRLSETS 61
             MMC+VMPTISED   G+RGS    ++A    E+LMVTM  E+++LL+ LRE QD L+   
Sbjct:     1 MMCEVMPTISED---GRRGSALGPDEAGGELERLMVTMLTERERLLETLREAQDGLATAQ 57

Query:    62 GKLSMVEKERDSLQRQIAASLPQ 84
              +L  +  E+DSLQRQ++ +LPQ
Sbjct:    58 LRLRELGHEKDSLQRQLSIALPQ 80

GO:0003674 "molecular_function" evidence=ND

GO:0005623 "cell" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0007269 "neurotransmitter secretion" evidence=ISO

GO:0048172 "regulation of short-term neuronal synaptic plasticity" evidence=ISO

UNIPROTKB|O75145 PPFIA3 "Liprin-alpha-3" [Homo sapiens (taxid:9606)]

 Score = 192 (72.6 bits), Expect = 9.3e-14, P = 9.3e-14
 Identities = 42/83 (50%), Positives = 58/83 (69%)

Query:     4 MMCDVMPTISEDVVPGQRGSLFSGEDAN--FEQLMVTMFDEKDKLLDNLRETQDRLSETS 61
             MMC+VMPTISED   G+RGS    ++A    E+LMVTM  E+++LL+ LRE QD L+   
Sbjct:     1 MMCEVMPTISED---GRRGSALGPDEAGGELERLMVTMLTERERLLETLREAQDGLATAQ 57

Query:    62 GKLSMVEKERDSLQRQIAASLPQ 84
              +L  +  E+DSLQRQ++ +LPQ
Sbjct:    58 LRLRELGHEKDSLQRQLSIALPQ 80

GO:0005737 "cytoplasm" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q13136	LIPA1_HUMAN	No assigned EC number	0.5340	0.9204	0.0673	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	88
PF15186	152	TEX13: Testis-expressed sequence 13 protein family	93.16
PF13152	34	DUF3967: Protein of unknown function (DUF3967)	92.03
PF10224	80	DUF2205: Predicted coiled-coil protein (DUF2205);	88.92
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	87.05
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	84.82

>PF15186 TEX13: Testis-expressed sequence 13 protein family

Probab=93.16  E-value=0.23  Score=36.90  Aligned_cols=28  Identities=36%  Similarity=0.401  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907          52 ETQDRLSETSGKLSMVEKERDSLQRQIA   79 (88)
Q Consensus        52 etQe~L~~~q~rL~eve~Erd~LqrQl~   79 (88)
                      |+.-+|..++..|+++.+|||.|...|-
T Consensus       121 eaa~qL~~~~a~L~~v~~ERD~Lr~kLl  148 (152)
T PF15186_consen  121 EAAFQLQLTQAALQEVQKERDLLRWKLL  148 (152)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444788999999999999999998664

>PF13152 DUF3967: Protein of unknown function (DUF3967)

Probab=92.03  E-value=0.17  Score=29.18  Aligned_cols=19  Identities=32%  Similarity=0.681  Sum_probs=15.2

Q ss_pred             hhhhHH-HHHHHHHHHHHHH
Q psy2907          40 FDEKDK-LLDNLRETQDRLS   58 (88)
Q Consensus        40 LdERDK-LletLretQe~L~   58 (88)
                      |++||+ ||.+|||.||+--
T Consensus         2 ~e~RD~~Lm~~iREiQE~Kk   21 (34)
T PF13152_consen    2 LEERDEQLMQTIREIQETKK   21 (34)
T ss_pred             hhhHHHHHHHHHHHHHHHHH
Confidence            578885 7899999998743

>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure

Probab=88.92  E-value=1.9  Score=28.72  Aligned_cols=36  Identities=31%  Similarity=0.538  Sum_probs=33.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy2907          41 DEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQR   76 (88)
Q Consensus        41 dERDKLletLretQe~L~~~q~rL~eve~Erd~Lqr   76 (88)
                      ++|++|.....+.|++|...-.|..+|..|.+.|..
T Consensus        16 e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~   51 (80)
T PF10224_consen   16 EEKEELIQEILELQDSLEALSDRVEEVKEENEKLES   51 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            679999999999999999999999999999998875

The exact function is unknown.

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=87.05  E-value=3.6  Score=26.09  Aligned_cols=37  Identities=22%  Similarity=0.308  Sum_probs=32.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907          43 KDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA   79 (88)
Q Consensus        43 RDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~   79 (88)
                      +.-|.+-|+.++.+...++.||++.+..+..|...+.
T Consensus        13 kQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~   49 (61)
T PF08826_consen   13 KQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIE   49 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567888999999999999999999999888888765

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=84.82  E-value=2.3  Score=36.84  Aligned_cols=38  Identities=26%  Similarity=0.441  Sum_probs=33.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907          42 EKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA   79 (88)
Q Consensus        42 ERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~   79 (88)
                      |+.-+=-+|+..|+.|+.+|.+|+|..+|++.||-||.
T Consensus       384 EKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelk  421 (527)
T PF15066_consen  384 EKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELK  421 (527)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            44445568999999999999999999999999999886

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	88
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	88.46
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	86.75
2dnx_A	130	Syntaxin-12; snare, HABC domain, UP and DOWN three	86.68
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	85.86
2l5g_A	38	GPS2 protein, G protein pathway suppressor 2; GPS2	85.57
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	81.11

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=88.46  E-value=1.5  Score=28.57  Aligned_cols=38  Identities=32%  Similarity=0.494  Sum_probs=34.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy2907          41 DEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQI   78 (88)
Q Consensus        41 dERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl   78 (88)
                      ++-|++.+.|.+++..|..+..+..+.+.+..+|+|-+
T Consensus        58 ~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rri   95 (101)
T 3u1c_A           58 DSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRI   95 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78889999999999999999999999999999999954

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=86.75  E-value=2.2  Score=27.50  Aligned_cols=39  Identities=33%  Similarity=0.500  Sum_probs=34.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907          41 DEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA   79 (88)
Q Consensus        41 dERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~   79 (88)
                      ++-|++.+.|.+++..|..+..+..+.+.+..+|+|-+.
T Consensus        58 ~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriq   96 (101)
T 3u59_A           58 DEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQ   96 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778899999999999999999999999999999999553

>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.68  E-value=5.3  Score=26.64  Aligned_cols=29  Identities=17%  Similarity=0.121  Sum_probs=23.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy2907          41 DEKDKLLDNLRETQDRLSETSGKLSMVEK   69 (88)
Q Consensus        41 dERDKLletLretQe~L~~~q~rL~eve~   69 (88)
                      +-|+||-+....|.+-...+...|+++..
T Consensus        48 ~LR~kl~~~~~~t~~l~k~ts~~lk~L~~   76 (130)
T 2dnx_A           48 KLQENLQQLQHSTNQLAKETNELLKELGS   76 (130)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            67999999999999888888888776544

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=85.86  E-value=4.6  Score=26.94  Aligned_cols=49  Identities=22%  Similarity=0.413  Sum_probs=40.1

Q ss_pred             hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907          31 NFEQLMVTMFDEKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA   79 (88)
Q Consensus        31 nfEQLMvnMLdERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~   79 (88)
                      .+|.-+++++.|+..|..+|..-++.++.+.-++..+...+..|..+++
T Consensus        38 ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~   86 (129)
T 2fxo_A           38 ELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVK   86 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            4567799999999999999999999999988887777776666666554

>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}

Probab=85.57  E-value=1.6  Score=25.03  Aligned_cols=30  Identities=27%  Similarity=0.357  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy2907          48 DNLRETQDRLSETSGKLSMVEKERDSLQRQ   77 (88)
Q Consensus        48 etLretQe~L~~~q~rL~eve~Erd~LqrQ   77 (88)
                      -||.||++++...+.||..+..|+-.|=-|
T Consensus         8 mTLeEtkeQi~~l~~kl~~LkeEKHQLFlQ   37 (38)
T 2l5g_A            8 MSLEETKEQILKLEEKLLALQEEKHQLFLQ   37 (38)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            489999999999999999999998776444

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=81.11  E-value=4.9  Score=26.22  Aligned_cols=38  Identities=11%  Similarity=0.209  Sum_probs=32.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy2907          42 EKDKLLDNLRETQDRLSETSGKLSMVEKERDSLQRQIA   79 (88)
Q Consensus        42 ERDKLletLretQe~L~~~q~rL~eve~Erd~LqrQl~   79 (88)
                      -+.-|.|-|+.++..+..++.||+|.++.+..|...+.
T Consensus        25 AKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~   62 (81)
T 1wt6_A           25 TRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVR   62 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35678899999999999999999999999988876543

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00