Psyllid ID: psy2920

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-----
MENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADGDKVAYKLAVPSNLVVIVPQTGELLLTGDPPSDDVEYELTVEAHDLQSPSRYAREPAQVWLQFNSPVLQDEQLLQMIDRKSEAPHRIEKRRVTRAVRPTKRIDFSETDGEMEGRIVFALEKETEREKFKIRDENPWITVDENGDVRVKKRWDFEELGPEKTIDFWVTINNQATNGGP
cccccccEEEEEEEEEEEccccccccEEEEEEEEccccccEEEEccccccccccccccccEEEEEccccccccccEEEEEEEEEEcccccEEEEEEEEEEEEcccccccccccEEEEEEEcccccccccccccccccEEEEEEEEEccccEEEEEEEcccccEEEEccccEEEEcccccccccEEEEEEEEEEccccccccEEEEEEEEEcccccccccccEEEccccccccEEEEEEEEEcccccEEEEEEEEccccccEEEEEEEEEccccccEEEEcccccEEEcccEEEEEccccccccccccccEEEEEEEEEccccccc
ccccccccEEEEEEEEEcccccccccEEEEEEEccccccEEEEccccccEEEEEEcccccEEEEEEcccccccccEEEEEEEEEcccccccEEEEEEEEEEEccccccccccccEEEEEccccccccccccccccEEEEEEEEcccccccEEEEEEEccccEEEEccccEEEEEEccccccccEEEEEEEEEcccccccccEEEEEEEEEcccccccEEEEEEEEEccccccccccccEEEEEEccEEEEEEEccccccccEEEEEEEccccccEEEEcccccEEEEcccEEEEEEEcccHHHccccccEEEEEEEEEccccccc
mensksgtgvkglPILVasshkhphqLVRYSItqgndnhtfalknpttheirnstesksgVLLVTsgdidreeVAQYSLVITATdvkginkaeTHVTVdvldendnspvfsqKVYRFIVGDLKSSLNSNVSHWKKfssigsvsatdadgdkvayklavpsnlvvivpqtgellltgdppsddvEYELTVEahdlqspsryarepAQVWLQfnspvlqdeQLLQMIDrkseaphriekrrvtravrptkridfsetdgeMEGRIVFALEKEterekfkirdenpwitvdengdvrvkkrwdfeelgpektIDFWVTINnqatnggp
mensksgtgvkGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTtheirnstesksgVLLVTSGDIDREEVAQYSLVItatdvkginkAETHVTvdvldendnspvfSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADGDKVAYKLAVPSNLVVIVPQTGELLLTGDPPSDDVEYELTVEahdlqspsrYAREPAQVWLQFNSPVLQDEQLLQMIdrkseaphriekrrvtravrptkridfsetdgemegRIVFaleketerekfkirdenpwitvdengdvrvkKRWDFeelgpektidfwVTINnqatnggp
MENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADGDKVAYKLAVPSNLVVIVPQTGELLLTGDPPSDDVEYELTVEAHDLQSPSRYAREPAQVWLQFNSPVLQDEQLLQMIDRKSEAPHRIEKRRVTRAVRPTKRIDFSETDGEMEGRIVFALEKETEREKFKIRDENPWITVDENGDVRVKKRWDFEELGPEKTIDFWVTINNQATNGGP
*************PILVA*******QLVRYSITQ**************************VLLVTSGDIDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADGDKVAYKLAVPSNLVVIVPQTGELLLTG********Y*L*****************AQVWLQFNSPVLQD*******************************************RIVFALE******KFKIRDENPWITVDENGDVRVKKRWDFEELGPEKTIDFWVTIN********
MENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADGDKVAYKLAVPSNLVVIVPQTGELLLTGDPPSDDVEYELTVEAHDLQSPSRYAREPAQVWLQFNSPVLQDEQLLQMIDRKSEAPHRIEKRRVTRAVRPTKRIDFSETDGEMEGRIVFALEKETEREKFKIRDENPWITVDENGDVRVKKRWDFEELGPEKTIDFWVTINNQA*****
*********VKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADGDKVAYKLAVPSNLVVIVPQTGELLLTGDPPSDDVEYELTVEAHDLQSPSRYAREPAQVWLQFNSPVLQDEQLLQMIDRKSEAPHRIEKRRVTRAVRPTKRIDFSETDGEMEGRIVFALEKETEREKFKIRDENPWITVDENGDVRVKKRWDFEELGPEKTIDFWVTINNQATNGGP
****KSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADGDKVAYKLAVPSNLVVIVPQTGELLLTGDPPSDDVEYELTVEAHDLQSPSRYAREPAQVWLQFNSPVLQDEQLLQMIDRKSEAPHRIEKRRVTRAVRPTKRIDFSETDGEMEGRIVFALEKETEREKFKIRDENPWITVDENGDVRVKKRWDFEELGPEKTIDFWVTINNQA*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADGDKVAYKLAVPSNLVVIVPQTGELLLTGDPPSDDVEYELTVEAHDLQSPSRYAREPAQVWLQFNSPVLQDEQLLQMIDRKSEAPHRIEKRRVTRAVRPTKRIDFSETDGEMEGRIVFALEKETEREKFKIRDENPWITVDENGDVRVKKRWDFEELGPEKTIDFWVTINNQATNGGP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query325 2.2.26 [Sep-21-2011]
O15943 3097 Neural-cadherin OS=Drosop yes N/A 0.984 0.103 0.495 3e-81
Q9NYQ8 4349 Protocadherin Fat 2 OS=Ho yes N/A 0.596 0.044 0.269 8e-09
P33450 5147 Cadherin-related tumor su no N/A 0.381 0.024 0.307 1e-08
Q96JQ0 3298 Protocadherin-16 OS=Homo no N/A 0.403 0.039 0.324 2e-08
Q5DRC3 795 Protocadherin beta-17 OS= no N/A 0.387 0.158 0.371 2e-08
Q5DRD9 798 Protocadherin beta-10 OS= no N/A 0.28 0.114 0.409 3e-08
Q24292 3503 Protein dachsous OS=Droso no N/A 0.501 0.046 0.329 4e-08
Q5DRC8 794 Protocadherin beta-6 OS=P no N/A 0.387 0.158 0.358 5e-08
Q9Y5E3 794 Protocadherin beta-6 OS=H no N/A 0.483 0.197 0.324 5e-08
Q9UN67 800 Protocadherin beta-10 OS= no N/A 0.390 0.158 0.355 7e-08
>sp|O15943|CADN_DROME Neural-cadherin OS=Drosophila melanogaster GN=CadN PE=1 SV=2 Back     alignment and function desciption
 Score =  302 bits (773), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 169/341 (49%), Positives = 232/341 (68%), Gaps = 21/341 (6%)

Query: 2   ENSKSGTGVKGLPILVASSHK------HPHQLVRYSITQGNDNHTFALKNPTTHE-IRNS 54
           EN  +GT V+G+P++ A S           + VRY+I  GN +  FAL+    ++ I+ S
Sbjct: 183 ENQPAGTRVRGVPLMQAFSGSILDEELATPKKVRYTIIDGNVDDAFALQERKANKNIQIS 242

Query: 55  TES-------KSGVLLVTSGDIDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNS 107
            +S       +SGV LVT+  +DREE A Y L + A+DV G+++  + + + VLDENDN 
Sbjct: 243 AKSLVINGDDESGVWLVTNRPLDREERAHYDLSVEASDVDGLDRTVSKIQITVLDENDNR 302

Query: 108 PVFSQKVYRF-IVGDLKSSLNSNVS-HWKKFSSIGSVSATDADGDKVAYKLAVPSNLVVI 165
           P+F    Y+F I G   +S+ SN S  +++F+ +G V ATDADGDK+AY+L  PSN+V+I
Sbjct: 303 PIFKSLDYKFAIAGQKSASMESNSSVTYQRFAIMGKVEATDADGDKIAYRLKSPSNVVII 362

Query: 166 VPQTGELLLTGDPPSDDVEYELTVEAHDLQSPSRYAREPAQVWLQFNS--PVLQDEQLLQ 223
           VPQTGE++L G+P S+++  E  V AHDL+ PS  + +PA+V L+F +  PV    Q L+
Sbjct: 363 VPQTGEIMLAGEPTSNELLIE--VIAHDLRYPSLVSAKPAKVLLEFLAAEPVSFIMQHLE 420

Query: 224 MIDRKSEAPHRIEKRRVTRAVRPTKRIDFSETDGEMEGRIVFALEKETEREKFKIRDENP 283
             D  + + HR EKRRVTRAVRPTKRI+F+E DG+ EG+ VF LEKET++E FKIRD+NP
Sbjct: 421 HDDINNHSHHR-EKRRVTRAVRPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNP 479

Query: 284 WITVDENGDVRVKKRWDFEELGPEKTIDFWVTINNQATNGG 324
           W+TV+ NG VRVKK+WD+EELGPEKTIDFWV I N   N G
Sbjct: 480 WVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAG 520
Cadherins are calcium dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types. May associate with arm neural isoform and participate in the transmission of developmental information.
Drosophila melanogaster (taxid: 7227)
>sp|Q9NYQ8|FAT2_HUMAN Protocadherin Fat 2 OS=Homo sapiens GN=FAT2 PE=1 SV=2 Back     alignment and function description
>sp|P33450|FAT_DROME Cadherin-related tumor suppressor OS=Drosophila melanogaster GN=ft PE=1 SV=3 Back     alignment and function description
>sp|Q96JQ0|PCD16_HUMAN Protocadherin-16 OS=Homo sapiens GN=DCHS1 PE=2 SV=1 Back     alignment and function description
>sp|Q5DRC3|PCDBH_PANTR Protocadherin beta-17 OS=Pan troglodytes GN=PCDHB17 PE=3 SV=1 Back     alignment and function description
>sp|Q5DRD9|PCDBA_PANTR Protocadherin beta-10 OS=Pan troglodytes GN=PCDHB10 PE=3 SV=1 Back     alignment and function description
>sp|Q24292|DS_DROME Protein dachsous OS=Drosophila melanogaster GN=ds PE=1 SV=3 Back     alignment and function description
>sp|Q5DRC8|PCDB6_PANTR Protocadherin beta-6 OS=Pan troglodytes GN=PCDHB6 PE=3 SV=1 Back     alignment and function description
>sp|Q9Y5E3|PCDB6_HUMAN Protocadherin beta-6 OS=Homo sapiens GN=PCDHB6 PE=2 SV=1 Back     alignment and function description
>sp|Q9UN67|PCDBA_HUMAN Protocadherin beta-10 OS=Homo sapiens GN=PCDHB10 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query325
189237687 3035 PREDICTED: similar to Neural-cadherin pr 0.975 0.104 0.563 5e-93
270008134 487 DN cadherin-like protein [Tribolium cast 0.956 0.638 0.570 8e-93
328702680 1040 PREDICTED: neural-cadherin-like [Acyrtho 0.972 0.303 0.543 8e-91
158298604 1325 AGAP009725-PA [Anopheles gambiae str. PE 0.978 0.24 0.536 3e-86
312385594 544 hypothetical protein AND_00580 [Anophele 0.975 0.582 0.521 1e-85
170061113 542 predicted protein [Culex quinquefasciatu 0.969 0.581 0.52 3e-84
195388064 3328 GJ20220 [Drosophila virilis] gi|19414916 0.978 0.095 0.495 3e-80
195065835 1243 GH25256 [Drosophila grimshawi] gi|193891 0.981 0.256 0.491 4e-80
303228011 1271 LD09349p [Drosophila melanogaster] 0.984 0.251 0.495 6e-80
194880377 1514 GG21728 [Drosophila erecta] gi|190657610 0.984 0.211 0.495 1e-79
>gi|189237687|ref|XP_969192.2| PREDICTED: similar to Neural-cadherin precursor (Cadherin-N protein) (DN-cadherin) [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  347 bits (889), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 186/330 (56%), Positives = 240/330 (72%), Gaps = 13/330 (3%)

Query: 2   ENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNST---ESK 58
           ENS +GT V GLP+L A+S    + +  YSI  GN    F L++  T ++  +    +S+
Sbjct: 116 ENSPAGTKVGGLPVLQAASGLTTNPIT-YSIIGGNVGQAFELRSSVTGDVMPNVTVGDSQ 174

Query: 59  SGVLLVTSGDIDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQKVYRFI 118
           +GV +VT+  +DREE ++Y L I A+D  G+NKA  +V ++V DENDNSPVFSQKVYRF+
Sbjct: 175 AGVDIVTAQVLDREETSRYVLTIQASDPLGVNKAVINVVIEVEDENDNSPVFSQKVYRFV 234

Query: 119 VGDLKSSLNSNVSHWKKFSSIGSVSATDADGDKVAYKLAVPSNLVVIVPQTGELLLTGDP 178
           VGD     ++  + WK+FSSIG V ATDADGDKVAY+LA P+N +VIVPQTG+LLL+ + 
Sbjct: 235 VGDDSLEGDNVTTTWKRFSSIGKVEATDADGDKVAYRLATPTNYLVIVPQTGDLLLS-EE 293

Query: 179 PSDDVEYELTVEAHDLQSPSRYAREPAQVWLQFNSP----VLQDEQLLQMIDRKSEAPHR 234
           P+++V+ EL VEAHDL++PSR +  PAQV  +F  P    V  D  L Q+ +R+    HR
Sbjct: 294 PTEEVDLELVVEAHDLRTPSRTSPRPAQVLFKFKPPESSKVELDLDLQQLAEREL---HR 350

Query: 235 IEKRRVTRAVRPTKRIDFSETDGEMEGRIVFALEKETEREKFKIRDENPWITVDENGDVR 294
             KRRVTRAVRPTKRI+F+E+DG+ EGR VF LEKET+RE FKIRDENPW+TVD NG VR
Sbjct: 351 -GKRRVTRAVRPTKRIEFTESDGDTEGRNVFQLEKETDRETFKIRDENPWVTVDPNGAVR 409

Query: 295 VKKRWDFEELGPEKTIDFWVTINNQATNGG 324
           VKK+WD+EELGPEKTIDFWVTI N   + G
Sbjct: 410 VKKKWDYEELGPEKTIDFWVTITNAEKSAG 439

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|270008134|gb|EFA04582.1| DN cadherin-like protein [Tribolium castaneum] Back     alignment and taxonomy information
>gi|328702680|ref|XP_003241980.1| PREDICTED: neural-cadherin-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|158298604|ref|XP_001238041.2| AGAP009725-PA [Anopheles gambiae str. PEST] gi|157013964|gb|EAU76025.2| AGAP009725-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|312385594|gb|EFR30049.1| hypothetical protein AND_00580 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|170061113|ref|XP_001866096.1| predicted protein [Culex quinquefasciatus] gi|167879347|gb|EDS42730.1| predicted protein [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|195388064|ref|XP_002052710.1| GJ20220 [Drosophila virilis] gi|194149167|gb|EDW64865.1| GJ20220 [Drosophila virilis] Back     alignment and taxonomy information
>gi|195065835|ref|XP_001996748.1| GH25256 [Drosophila grimshawi] gi|193891968|gb|EDV90834.1| GH25256 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|303228011|gb|ADM07129.1| LD09349p [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|194880377|ref|XP_001974423.1| GG21728 [Drosophila erecta] gi|190657610|gb|EDV54823.1| GG21728 [Drosophila erecta] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query325
FB|FBgn0015609 3097 CadN "Cadherin-N" [Drosophila 0.984 0.103 0.498 4.3e-76
FB|FBgn0000497 3503 ds "dachsous" [Drosophila mela 0.673 0.062 0.308 1.4e-09
UNIPROTKB|E1BVU9 830 PCDHA1 "Uncharacterized protei 0.458 0.179 0.310 1.6e-09
UNIPROTKB|F1NTS1 842 PCDHA1 "Uncharacterized protei 0.458 0.176 0.310 1.6e-09
ZFIN|ZDB-GENE-050203-2 939 pcdh1a6 "protocadherin 1 alpha 0.541 0.187 0.275 8.8e-09
UNIPROTKB|F1LP84 4586 Fat1 "Protein Fat1" [Rattus no 0.513 0.036 0.312 1e-08
RGD|621254 4589 Fat1 "FAT tumor suppressor hom 0.513 0.036 0.312 1e-08
UNIPROTKB|F1LR23 4589 Fat1 "Protein Fat1" [Rattus no 0.513 0.036 0.312 1e-08
UNIPROTKB|G3V9W9 4589 Fat1 "RCG59113" [Rattus norveg 0.513 0.036 0.312 1e-08
UNIPROTKB|I3LP38541 I3LP38 "Uncharacterized protei 0.390 0.234 0.363 1.1e-08
FB|FBgn0015609 CadN "Cadherin-N" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 781 (280.0 bits), Expect = 4.3e-76, Sum P(2) = 4.3e-76
 Identities = 170/341 (49%), Positives = 233/341 (68%)

Query:     2 ENSKSGTGVKGLPILVASSHKH-PHQL-----VRYSITQGNDNHTFALKNPTTHE-IRNS 54
             EN  +GT V+G+P++ A S      +L     VRY+I  GN +  FAL+    ++ I+ S
Sbjct:   183 ENQPAGTRVRGVPLMQAFSGSILDEELATPKKVRYTIIDGNVDDAFALQERKANKNIQIS 242

Query:    55 TES-------KSGVLLVTSGDIDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNS 107
              +S       +SGV LVT+  +DREE A Y L + A+DV G+++  + + + VLDENDN 
Sbjct:   243 AKSLVINGDDESGVWLVTNRPLDREERAHYDLSVEASDVDGLDRTVSKIQITVLDENDNR 302

Query:   108 PVFSQKVYRF-IVGDLKSSLNSNVS-HWKKFSSIGSVSATDADGDKVAYKLAVPSNLVVI 165
             P+F    Y+F I G   +S+ SN S  +++F+ +G V ATDADGDK+AY+L  PSN+V+I
Sbjct:   303 PIFKSLDYKFAIAGQKSASMESNSSVTYQRFAIMGKVEATDADGDKIAYRLKSPSNVVII 362

Query:   166 VPQTGELLLTGDPPSDDVEYELTVEAHDLQSPSRYAREPAQVWLQFNS--PVLQDEQLLQ 223
             VPQTGE++L G+P S+++  E  V AHDL+ PS  + +PA+V L+F +  PV    Q L+
Sbjct:   363 VPQTGEIMLAGEPTSNELLIE--VIAHDLRYPSLVSAKPAKVLLEFLAAEPVSFIMQHLE 420

Query:   224 MIDRKSEAPHRIEKRRVTRAVRPTKRIDFSETDGEMEGRIVFALEKETEREKFKIRDENP 283
               D  + + HR EKRRVTRAVRPTKRI+F+E DG+ EG+ VF LEKET++E FKIRD+NP
Sbjct:   421 HDDINNHSHHR-EKRRVTRAVRPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNP 479

Query:   284 WITVDENGDVRVKKRWDFEELGPEKTIDFWVTINNQATNGG 324
             W+TV+ NG VRVKK+WD+EELGPEKTIDFWV I N   N G
Sbjct:   480 WVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAG 520
GO:0005911 "cell-cell junction" evidence=IDA
GO:0016021 "integral to membrane" evidence=ISS
GO:0007156 "homophilic cell adhesion" evidence=ISS;IDA
GO:0005886 "plasma membrane" evidence=ISS;IDA;TAS
GO:0016339 "calcium-dependent cell-cell adhesion" evidence=ISS;IPI
GO:0005515 "protein binding" evidence=IPI
GO:0007413 "axonal fasciculation" evidence=TAS
GO:0050839 "cell adhesion molecule binding" evidence=ISS
GO:0005887 "integral to plasma membrane" evidence=ISS
GO:0004872 "receptor activity" evidence=ISS
GO:0007155 "cell adhesion" evidence=NAS
GO:0007412 "axon target recognition" evidence=IMP
GO:0008013 "beta-catenin binding" evidence=NAS
GO:0007411 "axon guidance" evidence=IGI;IMP;NAS
GO:0050774 "negative regulation of dendrite morphogenesis" evidence=IMP
GO:0048846 "axon extension involved in axon guidance" evidence=IMP
GO:0016318 "ommatidial rotation" evidence=IMP
GO:0045463 "R8 cell development" evidence=IMP
GO:0044331 "cell-cell adhesion mediated by cadherin" evidence=IDA
GO:0045467 "R7 cell development" evidence=IMP
GO:0031290 "retinal ganglion cell axon guidance" evidence=IMP
GO:0048841 "regulation of axon extension involved in axon guidance" evidence=IMP
GO:0048675 "axon extension" evidence=IMP
GO:0048814 "regulation of dendrite morphogenesis" evidence=IMP
GO:0045296 "cadherin binding" evidence=IPI
GO:0005509 "calcium ion binding" evidence=IDA
GO:0042803 "protein homodimerization activity" evidence=IPI
FB|FBgn0000497 ds "dachsous" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E1BVU9 PCDHA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NTS1 PCDHA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050203-2 pcdh1a6 "protocadherin 1 alpha 6" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1LP84 Fat1 "Protein Fat1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|621254 Fat1 "FAT tumor suppressor homolog 1 (Drosophila)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LR23 Fat1 "Protein Fat1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G3V9W9 Fat1 "RCG59113" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|I3LP38 I3LP38 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query325
smart0011281 smart00112, CA, Cadherin repeats 1e-12
cd1130498 cd11304, Cadherin_repeat, Cadherin tandem repeat d 3e-12
pfam0002892 pfam00028, Cadherin, Cadherin domain 2e-06
cd1130498 cd11304, Cadherin_repeat, Cadherin tandem repeat d 7e-05
pfam0002892 pfam00028, Cadherin, Cadherin domain 0.003
>gnl|CDD|214520 smart00112, CA, Cadherin repeats Back     alignment and domain information 
 Score = 62.4 bits (152), Expect = 1e-12
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 14/82 (17%)

Query: 28  VRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVK 87
           V YSI  GND+  F++            + ++G +  T+  +DREE  +Y+L + ATD  
Sbjct: 13  VTYSILSGNDDGLFSI------------DPETGEI-TTTKPLDREEQPEYTLTVEATDGG 59

Query: 88  GINK-AETHVTVDVLDENDNSP 108
           G    +   VT+ VLD NDN+P
Sbjct: 60  GPPLSSTATVTITVLDVNDNAP 81

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium. Length = 81
>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain Back     alignment and domain information
>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain Back     alignment and domain information
>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain Back     alignment and domain information
>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 325
KOG4289|consensus 2531 100.0
KOG4289|consensus 2531 100.0
KOG1219|consensus 4289 100.0
KOG1219|consensus 4289 100.0
cd00031199 CA Cadherin repeat domain; Cadherins are glycoprot 99.98
cd00031199 CA Cadherin repeat domain; Cadherins are glycoprot 99.93
PF0002893 Cadherin: Cadherin domain; InterPro: IPR002126 Cad 99.65
KOG1834|consensus 952 99.64
PF0002893 Cadherin: Cadherin domain; InterPro: IPR002126 Cad 99.63
smart0011279 CA Cadherin repeats. Cadherins are glycoproteins i 99.58
KOG1834|consensus 952 99.53
smart0011279 CA Cadherin repeats. Cadherins are glycoproteins i 99.39
PF0826684 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cad 97.23
PF0875890 Cadherin_pro: Cadherin prodomain like; InterPro: I 96.53
smart0073697 CADG Dystroglycan-type cadherin-like domains. Cadh 96.06
PF0826684 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cad 96.03
smart0073697 CADG Dystroglycan-type cadherin-like domains. Cadh 94.44
PF13750158 Big_3_3: Bacterial Ig-like domain (group 3) 93.74
PF0875890 Cadherin_pro: Cadherin prodomain like; InterPro: I 91.96
TIGR0196599 VCBS_repeat VCBS repeat. This domain of about 100 91.75
PF0534549 He_PIG: Putative Ig domain; InterPro: IPR008009 Th 89.27
KOG3597|consensus 442 88.68
PF13750158 Big_3_3: Bacterial Ig-like domain (group 3) 87.57
TIGR0196599 VCBS_repeat VCBS repeat. This domain of about 100 87.5
PF0749566 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi 84.48
TIGR00845 928 caca sodium/calcium exchanger 1. This model is spe 84.12
PF05895624 DUF859: Siphovirus protein of unknown function (DU 81.95
>KOG4289|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.9e-42  Score=344.04  Aligned_cols=269  Identities=25%  Similarity=0.318  Sum_probs=242.9

Q ss_pred             CCCCCCCceEEeeEEEecCCCCCCCceEEEEEeeC---CCCceEEEeCCCCccccccccCCcceEEEecccCCcccccEE
Q psy2920           1 MENSKSGTGVKGLPILVASSHKHPHQLVRYSITQG---NDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQY   77 (325)
Q Consensus         1 ~En~~~Gt~v~~~~a~d~D~~~~~~~~i~y~i~~~---~~~~~F~i~~~~g~~~~~~~~~~~~~~l~~~~~LDrE~~~~~   77 (325)
                      |||.|.||.|+.+.|.|+|+     +++.|++...   ...+.|+||+.+|             .|++.+.||||....|
T Consensus       174 pEn~pagT~iasv~A~~~~a-----~rl~Ysm~al~dsRS~~lFslD~~sG-------------~irta~~lDREt~e~H  235 (2531)
T KOG4289|consen  174 PENEPAGTIIASVKASDPDA-----GRLYYSMVALFDSRSQNLFSLDPMSG-------------AIRTAKSLDRETKETH  235 (2531)
T ss_pred             cCCCCCCceeEEEEecCCCc-----CceEEEeeeccchhccccEeeccccc-------------cchhhhhhhhhhhhee
Confidence            89999999999999999983     6799998753   2347999999999             9999999999999999


Q ss_pred             EEEEEEEeCCCCC-eeEEEEEEEEecCCCCCCccCcceeEEEEeccCCCCCCCcccccceeEEEEEEEEeCCC---CeEE
Q psy2920          78 SLVITATDVKGIN-KAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADG---DKVA  153 (325)
Q Consensus        78 ~l~v~a~D~~~~~-~~~~~v~v~V~DvNdn~P~f~~~~~~~~v~E~~~~g~~~~~~~~~~~~v~~v~A~D~D~---~~v~  153 (325)
                      .|+|+|.|.+.|. +++++|+|.|+|+|||.|+|.+..|.-.+.||.+.|          ..|.+|+|+|.|.   +.|.
T Consensus       236 vlrVtA~d~~~P~~SAtttv~V~V~D~nDhsPvFEq~~Y~e~lREn~evG----------y~vLtvrAtD~Dsp~Nani~  305 (2531)
T KOG4289|consen  236 VLRVTAQDHGDPRRSATTTVTVLVLDTNDHSPVFEQDEYREELRENLEVG----------YEVLTVRATDGDSPPNANIR  305 (2531)
T ss_pred             EEEEEeeecCCCcccceeEEEEEEeecCCCCcccchhHHHHHHhhccccC----------ceEEEEEeccCCCCCCCceE
Confidence            9999999999887 899999999999999999999999999999999999          9999999999998   5899


Q ss_pred             EEEecC--CCcEEEeCCceEEEEccC-CCCCCceEEEEEEEEeCCCCCCcceecEEEEEEEec-CCCCCceeeeccccCC
Q psy2920         154 YKLAVP--SNLVVIVPQTGELLLTGD-PPSDDVEYELTVEAHDLQSPSRYAREPAQVWLQFNS-PVLQDEQLLQMIDRKS  229 (325)
Q Consensus       154 Y~i~~~--~~~F~i~~~tG~i~l~~~-d~e~~~~y~l~V~a~D~g~p~~~s~~t~~v~I~v~d-~~~~P~~~~~~~~~~~  229 (325)
                      |++.++  .+.|+|++.+|.|.+..+ |+|....|.|.|+|+|.|.|+..+  |+.|.|+|+| |||+|. |..      
T Consensus       306 Yrl~eg~~~~~f~in~rSGvI~T~a~lDRE~~~~y~L~VeAsDqG~~pgp~--Ta~V~itV~D~NDNaPq-Fse------  376 (2531)
T KOG4289|consen  306 YRLLEGNAKNVFEINPRSGVISTRAPLDREELESYQLDVEASDQGRPPGPR--TAMVEITVEDENDNAPQ-FSE------  376 (2531)
T ss_pred             EEecCCCccceeEEcCccceeeccCccCHHhhhheEEEEEeccCCCCCCCc--eEEEEEEEEecCCCCcc-ccc------
Confidence            999986  578999999999999999 999999999999999999988888  9999999999 667777 322      


Q ss_pred             CCccceeeeeEeeccCC---ceEEEEEeCCCCccceEEEEEEeCCcccceEeeCCCCceEeCCCeeEEEceeCccccCCC
Q psy2920         230 EAPHRIEKRRVTRAVRP---TKRIDFSETDGEMEGRIVFALEKETEREKFKIRDENPWITVDENGDVRVKKRWDFEELGP  306 (325)
Q Consensus       230 ~~~~~~~~~~v~~~~~~---~~~v~a~d~D~~~~~~i~y~i~~~~~~~~F~i~~~~~~f~i~~tG~i~~~~~lD~E~~~~  306 (325)
                          ..|..++.|++.+   +.+|+|+|.|.|.|+.+.|+|.+|+..+.|.|+.        .+|+|.+..+||+|..  
T Consensus       377 ----~~Yvvqv~Edvt~~avvlrV~AtDrD~g~Ng~VHYsi~Sgn~~G~f~id~--------~tGel~vv~plD~e~~--  442 (2531)
T KOG4289|consen  377 ----KRYVVQVREDVTPPAVVLRVTATDRDKGTNGKVHYSIASGNGRGQFYIDS--------LTGELDVVEPLDFENS--  442 (2531)
T ss_pred             ----cceEEEecccCCCCceEEEEEecccCCCcCceEEEEeeccCccccEEEec--------ccceEEEeccccccCC--
Confidence                2234555555554   6889999999999999999999999999999987        6999999999999994  


Q ss_pred             CceEEEEEEEecCCCC
Q psy2920         307 EKTIDFWVTINNQATN  322 (325)
Q Consensus       307 ~~~~~l~V~a~D~~~~  322 (325)
                        .|.+.|.|.|.|-+
T Consensus       443 --~ytl~IrAqDggrP  456 (2531)
T KOG4289|consen  443 --EYTLRIRAQDGGRP  456 (2531)
T ss_pred             --eeEEEEEcccCCCC
Confidence              89999999999865

>KOG4289|consensus Back     alignment and domain information
>KOG1219|consensus Back     alignment and domain information
>KOG1219|consensus Back     alignment and domain information
>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here Back     alignment and domain information
>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here Back     alignment and domain information
>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,] Back     alignment and domain information
>KOG1834|consensus Back     alignment and domain information
>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,] Back     alignment and domain information
>smart00112 CA Cadherin repeats Back     alignment and domain information
>KOG1834|consensus Back     alignment and domain information
>smart00112 CA Cadherin repeats Back     alignment and domain information
>PF08266 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,] Back     alignment and domain information
>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion Back     alignment and domain information
>smart00736 CADG Dystroglycan-type cadherin-like domains Back     alignment and domain information
>PF08266 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,] Back     alignment and domain information
>smart00736 CADG Dystroglycan-type cadherin-like domains Back     alignment and domain information
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3) Back     alignment and domain information
>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion Back     alignment and domain information
>TIGR01965 VCBS_repeat VCBS repeat Back     alignment and domain information
>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins Back     alignment and domain information
>KOG3597|consensus Back     alignment and domain information
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3) Back     alignment and domain information
>TIGR01965 VCBS_repeat VCBS repeat Back     alignment and domain information
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators Back     alignment and domain information
>TIGR00845 caca sodium/calcium exchanger 1 Back     alignment and domain information
>PF05895 DUF859: Siphovirus protein of unknown function (DUF859); InterPro: IPR008577 This entry is represented by Streptococcus phage 7201, Orf39 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query325
3ubh_A 419 Crystal Structure Of Drosophila N-Cadherin Ec1-4 Le 5e-34
3ubf_A 316 Crystal Structure Of Drosophila N-Cadherin Ec1-3, I 7e-31
1l3w_A 546 C-Cadherin Ectodomain Length = 546 6e-07
1q55_A 880 W-Shaped Trans Interactions Of Cadherins Model Base 6e-07
2o72_A213 Crystal Structure Analysis Of Human E-Cadherin (1-2 1e-05
3q2w_A 559 Crystal Structure Of Mouse N-Cadherin Ectodomain Le 2e-05
3k5s_A217 Crystal Structure Of Chicken T-Cadherin Ec1 Ec2 Len 4e-05
3lni_A213 Crystal Structure Of E-Cadherin Ec12 E89a Length = 6e-05
3q2v_A 550 Crystal Structure Of Mouse E-Cadherin Ectodomain Le 2e-04
2qvf_B213 Mouse E-cadherin Domains 1,2 Length = 213 2e-04
1edh_A226 E-Cadherin Domains 1 And 2 In Complex With Calcium 2e-04
3lne_A213 Crystal Structure Of E-Cadherin Ec12 K14e Length = 2e-04
1ff5_A219 Structure Of E-Cadherin Double Domain Length = 219 2e-04
3qrb_A213 Crystal Structure Of E-Cadherin Ec1-2 P5a P6a Lengt 2e-04
3lng_A215 Crystal Structure Of E-Cadherin Ec12 Aa Extension L 2e-04
1q1p_A212 E-Cadherin Activation Length = 212 3e-04
3k5r_A218 Crystal Structure Of Mouse T-Cadherin Ec1 Ec2 Lengt 3e-04
3lnh_A213 Crystal Structure Of E-Cadherin Ec12 W2a Length = 2 3e-04
3lnf_A213 Crystal Structure Of E-Cadherin Ec12 K14ew2a Length 3e-04
3q2l_A213 Mouse E-Cadherin Ec1-2 V81d Mutant Length = 213 4e-04
3q2n_A213 Mouse E-Cadherin Ec1-2 L175d Mutant Length = 213 5e-04
>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4 Length = 419 Back     alignment and structure 
Iteration: 1

 Score =  141 bits (356), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 63/87 (72%), Positives = 74/87 (85%)
Query: 238 RRVTRAVRPTKRIDFSETDGEMEGRIVFALEKETEREKFKIRDENPWITVDENGDVRVKK 297
           RRVTRAVRPTKRI+F+E DG+ EG+ VF LEKET++E FKIRD+NPW+TV+ NG VRVKK
Sbjct: 2   RRVTRAVRPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKK 61
Query: 298 RWDFEELGPEKTIDFWVTINNQATNGG 324
           +WD+EELGPEKTIDFWV I N   N G
Sbjct: 62  KWDYEELGPEKTIDFWVIITNMGHNAG 88
>pdb|3UBF|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, I Length = 316 Back     alignment and structure
>pdb|1L3W|A Chain A, C-Cadherin Ectodomain Length = 546 Back     alignment and structure
>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes Obtained By Electron Tomography Length = 880 Back     alignment and structure
>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213) Length = 213 Back     alignment and structure
>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain Length = 559 Back     alignment and structure
>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2 Length = 217 Back     alignment and structure
>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a Length = 213 Back     alignment and structure
>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain Length = 550 Back     alignment and structure
>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2 Length = 213 Back     alignment and structure
>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium Length = 226 Back     alignment and structure
>pdb|3LNE|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14e Length = 213 Back     alignment and structure
>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain Length = 219 Back     alignment and structure
>pdb|3QRB|A Chain A, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a Length = 213 Back     alignment and structure
>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension Length = 215 Back     alignment and structure
>pdb|1Q1P|A Chain A, E-Cadherin Activation Length = 212 Back     alignment and structure
>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2 Length = 218 Back     alignment and structure
>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a Length = 213 Back     alignment and structure
>pdb|3LNF|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14ew2a Length = 213 Back     alignment and structure
>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant Length = 213 Back     alignment and structure
>pdb|3Q2N|A Chain A, Mouse E-Cadherin Ec1-2 L175d Mutant Length = 213 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query325
3mvs_A210 Cadherin-23, otocadherin; adhesion, extracellular 4e-27
3mvs_A210 Cadherin-23, otocadherin; adhesion, extracellular 2e-12
3mvs_A210 Cadherin-23, otocadherin; adhesion, extracellular 2e-10
2a4e_A215 Cadherin-11; dimer, calcium binding, cell adhesion 7e-27
2a4e_A215 Cadherin-11; dimer, calcium binding, cell adhesion 3e-13
3lnd_A207 CDH6 protein, cadherin 6; cell adhesion, cell memb 2e-26
3ppe_A203 Vascular endothelial cadherin; extracellular cadhe 3e-25
3ppe_A203 Vascular endothelial cadherin; extracellular cadhe 4e-09
2a62_A322 Cadherin-8; extracellular domain, homodimer, calci 2e-24
2a62_A322 Cadherin-8; extracellular domain, homodimer, calci 1e-22
3k5r_A218 Cadherin 13; mouse, structural protein; 2.00A {Mus 3e-24
3ubf_A316 Neural-cadherin; cell adhesion; 2.50A {Drosophila 3e-24
3ubf_A316 Neural-cadherin; cell adhesion; 2.50A {Drosophila 7e-19
3ubf_A 316 Neural-cadherin; cell adhesion; 2.50A {Drosophila 3e-11
3ubf_A316 Neural-cadherin; cell adhesion; 2.50A {Drosophila 1e-09
3q2w_A559 Cadherin-2; cell adhesion, calcium binding; HET: M 2e-23
3q2w_A 559 Cadherin-2; cell adhesion, calcium binding; HET: M 7e-19
3q2w_A 559 Cadherin-2; cell adhesion, calcium binding; HET: M 4e-17
3q2w_A559 Cadherin-2; cell adhesion, calcium binding; HET: M 8e-11
3q2w_A559 Cadherin-2; cell adhesion, calcium binding; HET: M 4e-09
3q2v_A550 Cadherin-1; cell adhesion, calcium binding; HET: M 5e-23
3q2v_A 550 Cadherin-1; cell adhesion, calcium binding; HET: M 3e-18
3q2v_A 550 Cadherin-1; cell adhesion, calcium binding; HET: M 3e-17
3q2v_A550 Cadherin-1; cell adhesion, calcium binding; HET: M 4e-12
3q2v_A550 Cadherin-1; cell adhesion, calcium binding; HET: M 3e-08
3qrb_A213 Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu 1e-22
1l3w_A546 EP-cadherin, C-cadherin; cell adhesion, calcium bi 5e-22
1l3w_A 546 EP-cadherin, C-cadherin; cell adhesion, calcium bi 2e-19
1l3w_A 546 EP-cadherin, C-cadherin; cell adhesion, calcium bi 4e-16
1l3w_A546 EP-cadherin, C-cadherin; cell adhesion, calcium bi 2e-13
1l3w_A546 EP-cadherin, C-cadherin; cell adhesion, calcium bi 5e-04
1q55_A 880 EP-cadherin, C-cadherin; trans interaction, desmos 1e-21
1q55_A 880 EP-cadherin, C-cadherin; trans interaction, desmos 4e-20
1q55_A 880 EP-cadherin, C-cadherin; trans interaction, desmos 4e-16
1q55_A880 EP-cadherin, C-cadherin; trans interaction, desmos 3e-13
1q55_A 880 EP-cadherin, C-cadherin; trans interaction, desmos 9e-10
1q55_A 880 EP-cadherin, C-cadherin; trans interaction, desmos 3e-08
2qvi_A215 Cadherin-2; beta barrel, strand SWAP, domain SWAP, 2e-21
2qvi_A215 Cadherin-2; beta barrel, strand SWAP, domain SWAP, 1e-08
3ubh_A419 Neural-cadherin; cell adhesion; 2.70A {Drosophila 8e-21
3ubh_A419 Neural-cadherin; cell adhesion; 2.70A {Drosophila 7e-20
3ubh_A419 Neural-cadherin; cell adhesion; 2.70A {Drosophila 9e-20
3ubh_A 419 Neural-cadherin; cell adhesion; 2.70A {Drosophila 7e-09
2x2u_A246 Proto-oncogene tyrosine-protein kinase receptor RE 8e-15
2x2u_A246 Proto-oncogene tyrosine-protein kinase receptor RE 3e-11
2yqg_A123 Desmoglein-2, HDGC; cadherin, structural genomics, 2e-12
1ncg_A110 N-cadherin; cell adhesion protein; 2.10A {Mus musc 4e-12
2yst_A119 Protocadherin-7; BH-PCDH, beta-sandwich, structura 2e-11
2yst_A119 Protocadherin-7; BH-PCDH, beta-sandwich, structura 5e-10
2ee0_A114 Protocadherin-9; Ca domain, structural genomics, N 5e-10
2ee0_A114 Protocadherin-9; Ca domain, structural genomics, N 3e-07
1zvn_A99 Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal 2e-08
1zxk_A98 Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu 3e-07
2omz_B105 Epithelial-cadherin; leucine-rich-repeat, nvasion 1e-06
3k6f_A100 T-cadherin; cell adhesion, calcium, cell membrane, 2e-06
3k6d_A99 T-cadherin; cell adhesion; 1.80A {Xenopus laevis} 6e-06
3k6i_A99 T-cadherin; cell adhesion, alternative splicing, c 2e-05
1wyj_A125 Protocadherin beta 14; SS bond, structural genomic 2e-04
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210 Back     alignment and structure
 Score =  104 bits (262), Expect = 4e-27
 Identities = 40/178 (22%), Positives = 66/178 (37%), Gaps = 33/178 (18%)

Query: 28  VRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVK 87
           + + ++    +  FA+            E  +GV+      +DRE  +++++  + +D  
Sbjct: 42  LVFGVSGEEASRFFAV------------EPDTGVV-WLRQPLDRETKSEFTVEFSVSD-- 86

Query: 88  GINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDA 147
                   V + V D NDN+P F  + Y   +       N+ V      + I  V+ATD 
Sbjct: 87  HQGVITRKVNIQVGDVNDNAPTFHNQPYSVRI-----PENTPVG-----TPIFIVNATDP 136

Query: 148 D-GD--KVAYKLAVPSNLVVIVPQTGELLLTGDPPSD---DVEYELTVEAHDLQSPSR 199
           D G    V Y    PS    I    G + +      D      Y+LTV A D      
Sbjct: 137 DLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQ--ELDYEVTQAYQLTVNATDQDKTRP 192
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210 Back     alignment and structure
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210 Back     alignment and structure
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215 Back     alignment and structure
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215 Back     alignment and structure
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207 Back     alignment and structure
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203 Back     alignment and structure
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203 Back     alignment and structure
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322 Back     alignment and structure
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322 Back     alignment and structure
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218 Back     alignment and structure
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316 Back     alignment and structure
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316 Back     alignment and structure
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316 Back     alignment and structure
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316 Back     alignment and structure
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559 Back     alignment and structure
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559 Back     alignment and structure
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559 Back     alignment and structure
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559 Back     alignment and structure
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559 Back     alignment and structure
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550 Back     alignment and structure
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550 Back     alignment and structure
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550 Back     alignment and structure
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550 Back     alignment and structure
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550 Back     alignment and structure
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213 Back     alignment and structure
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546 Back     alignment and structure
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546 Back     alignment and structure
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546 Back     alignment and structure
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546 Back     alignment and structure
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546 Back     alignment and structure
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880 Back     alignment and structure
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880 Back     alignment and structure
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880 Back     alignment and structure
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880 Back     alignment and structure
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880 Back     alignment and structure
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880 Back     alignment and structure
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215 Back     alignment and structure
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215 Back     alignment and structure
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419 Back     alignment and structure
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419 Back     alignment and structure
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419 Back     alignment and structure
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419 Back     alignment and structure
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246 Back     alignment and structure
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246 Back     alignment and structure
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123 Back     alignment and structure
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Length = 110 Back     alignment and structure
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119 Back     alignment and structure
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119 Back     alignment and structure
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114 Back     alignment and structure
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114 Back     alignment and structure
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus} Length = 99 Back     alignment and structure
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A Length = 98 Back     alignment and structure
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B Length = 105 Back     alignment and structure
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus} Length = 100 Back     alignment and structure
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A Length = 99 Back     alignment and structure
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus} Length = 99 Back     alignment and structure
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus} Length = 125 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query325
2a62_A322 Cadherin-8; extracellular domain, homodimer, calci 100.0
3q2w_A 559 Cadherin-2; cell adhesion, calcium binding; HET: M 100.0
3q2v_A 550 Cadherin-1; cell adhesion, calcium binding; HET: M 100.0
3q2w_A 559 Cadherin-2; cell adhesion, calcium binding; HET: M 100.0
3q2v_A 550 Cadherin-1; cell adhesion, calcium binding; HET: M 100.0
1l3w_A 546 EP-cadherin, C-cadherin; cell adhesion, calcium bi 100.0
3ubh_A419 Neural-cadherin; cell adhesion; 2.70A {Drosophila 100.0
1l3w_A 546 EP-cadherin, C-cadherin; cell adhesion, calcium bi 100.0
3ubf_A316 Neural-cadherin; cell adhesion; 2.50A {Drosophila 100.0
1q55_A 880 EP-cadherin, C-cadherin; trans interaction, desmos 100.0
1q55_A 880 EP-cadherin, C-cadherin; trans interaction, desmos 100.0
3ubh_A 419 Neural-cadherin; cell adhesion; 2.70A {Drosophila 100.0
2a4e_A215 Cadherin-11; dimer, calcium binding, cell adhesion 100.0
3mvs_A210 Cadherin-23, otocadherin; adhesion, extracellular 100.0
2x2u_A246 Proto-oncogene tyrosine-protein kinase receptor RE 100.0
2qvi_A215 Cadherin-2; beta barrel, strand SWAP, domain SWAP, 100.0
3ppe_A203 Vascular endothelial cadherin; extracellular cadhe 100.0
3qrb_A213 Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu 100.0
3lnd_A207 CDH6 protein, cadherin 6; cell adhesion, cell memb 100.0
3k5r_A218 Cadherin 13; mouse, structural protein; 2.00A {Mus 100.0
3ubf_A316 Neural-cadherin; cell adhesion; 2.50A {Drosophila 100.0
2a62_A322 Cadherin-8; extracellular domain, homodimer, calci 100.0
3mvs_A210 Cadherin-23, otocadherin; adhesion, extracellular 99.97
4apx_B242 Protocadherin-15, otocadherin; cell adhesion, hear 99.97
2a4e_A215 Cadherin-11; dimer, calcium binding, cell adhesion 99.96
3qrb_A213 Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu 99.96
2x2u_A246 Proto-oncogene tyrosine-protein kinase receptor RE 99.96
2qvi_A215 Cadherin-2; beta barrel, strand SWAP, domain SWAP, 99.96
3k5r_A218 Cadherin 13; mouse, structural protein; 2.00A {Mus 99.95
3lnd_A207 CDH6 protein, cadherin 6; cell adhesion, cell memb 99.95
3ppe_A203 Vascular endothelial cadherin; extracellular cadhe 99.95
2yst_A119 Protocadherin-7; BH-PCDH, beta-sandwich, structura 99.92
4apx_B242 Protocadherin-15, otocadherin; cell adhesion, hear 99.91
2ee0_A114 Protocadherin-9; Ca domain, structural genomics, N 99.9
2yqg_A123 Desmoglein-2, HDGC; cadherin, structural genomics, 99.81
2yst_A119 Protocadherin-7; BH-PCDH, beta-sandwich, structura 99.8
1ncg_A110 N-cadherin; cell adhesion protein; 2.10A {Mus musc 99.8
1wyj_A125 Protocadherin beta 14; SS bond, structural genomic 99.77
2yqg_A123 Desmoglein-2, HDGC; cadherin, structural genomics, 99.76
2ee0_A114 Protocadherin-9; Ca domain, structural genomics, N 99.71
1ncg_A110 N-cadherin; cell adhesion protein; 2.10A {Mus musc 99.7
1zvn_A99 Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal 99.68
3k6d_A99 T-cadherin; cell adhesion; 1.80A {Xenopus laevis} 99.68
3k6f_A100 T-cadherin; cell adhesion, calcium, cell membrane, 99.67
1zxk_A98 Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu 99.67
3k6d_A99 T-cadherin; cell adhesion; 1.80A {Xenopus laevis} 99.66
3k6i_A99 T-cadherin; cell adhesion, alternative splicing, c 99.64
3k6f_A100 T-cadherin; cell adhesion, calcium, cell membrane, 99.64
3k6i_A99 T-cadherin; cell adhesion, alternative splicing, c 99.64
1zvn_A99 Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal 99.63
1zxk_A98 Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu 99.63
2omz_B105 Epithelial-cadherin; leucine-rich-repeat, nvasion 99.61
2omz_B105 Epithelial-cadherin; leucine-rich-repeat, nvasion 99.6
1wyj_A125 Protocadherin beta 14; SS bond, structural genomic 99.49
1wuz_A103 Pcdha4 protein, CNR-EC1; cadherin, heteronuclear p 99.48
1wuz_A103 Pcdha4 protein, CNR-EC1; cadherin, heteronuclear p 99.02
3pdd_A190 Glycoside hydrolase, family 9; CBHA, beta-sandwich 95.86
2yhg_A437 SDE_182CT, cellulose-binding protein; hydrolase, g 93.34
3pdd_A190 Glycoside hydrolase, family 9; CBHA, beta-sandwich 82.57
3rb5_A298 Na/Ca exchange protein; CBD12, calcium binding and 80.12
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Back     alignment and structure
Probab=100.00  E-value=4.6e-49  Score=363.10  Aligned_cols=276  Identities=21%  Similarity=0.268  Sum_probs=236.6

Q ss_pred             CCC--CCCCceEEeeEEEecCCCCCCCceEEEEEeeCCCCceEEEeCCCCccccccccCCcceEEEecccCCcccccEEE
Q psy2920           1 MEN--SKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYS   78 (325)
Q Consensus         1 ~En--~~~Gt~v~~~~a~d~D~~~~~~~~i~y~i~~~~~~~~F~i~~~~g~~~~~~~~~~~~~~l~~~~~LDrE~~~~~~   78 (325)
                      +||  .+.|+.|+++. +|.|.+   ++.++|+|.+++....|.|++.+|             .|.+.++||||....|.
T Consensus        10 ~E~~~~~~~~~v~~va-~D~D~g---~~~i~Y~l~~~~~~~~F~Id~~tG-------------~i~~~~~LDrE~~~~y~   72 (322)
T 2a62_A           10 LEEFSGPEPILVGRLH-TDLDPG---SKKIKYILSGDGAGTIFQINDITG-------------DIHAIKRLDREEKAEYT   72 (322)
T ss_dssp             CCSCCCSSCEECCCCC-CCCCCS---SCCCEEEEEETTBTTTEEEETTTT-------------EEEECSCCCTTTCSBCC
T ss_pred             ccccCCCCCEEEEEEE-EcCCCC---CCEEEEEEECCCCCCcEEEeCCcC-------------EEEEeccCCcccccEEE
Confidence            588  88999999996 677765   378999999865557899999999             99999999999999999


Q ss_pred             EEEEEEeCCCC-C-eeEEEEEEEEecCCCCCCccCcceeEEEEeccCCCCCCCcccccceeEEEEEEEEeCCC------C
Q psy2920          79 LVITATDVKGI-N-KAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADG------D  150 (325)
Q Consensus        79 l~v~a~D~~~~-~-~~~~~v~v~V~DvNdn~P~f~~~~~~~~v~E~~~~g~~~~~~~~~~~~v~~v~A~D~D~------~  150 (325)
                      |+|.|+|.++. + ++.+.+.|.|+|+|||+|.|....|.+.|+|+.++|          +.|+++.|+|+|.      +
T Consensus        73 l~v~a~D~~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~g----------t~v~~v~A~D~D~~~~G~n~  142 (322)
T 2a62_A           73 LTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILG----------TSVTNVTATDADDPVYGNSA  142 (322)
T ss_dssp             EEEEEECTTTCSEEEEEEEECEECCCCSCSCBCCSSSEEEEEECSSCCTT----------CBCCCCCCCBCSCSSSTTSS
T ss_pred             EEEEEEECCCCCcccceEEEEEEEEecCCCCCccCCCceEEEEeCCCCCC----------CEEEEEEEEeCCCCCCCccE
Confidence            99999998753 2 678899999999999999999999999999999999          9999999999994      4


Q ss_pred             eEEEEEecCCCcEEEeCCceEEEEc-cC-CCCCCceEEEEEEEEeCCCCC--CcceecEEEEEEEecCCCCCceeeeccc
Q psy2920         151 KVAYKLAVPSNLVVIVPQTGELLLT-GD-PPSDDVEYELTVEAHDLQSPS--RYAREPAQVWLQFNSPVLQDEQLLQMID  226 (325)
Q Consensus       151 ~v~Y~i~~~~~~F~i~~~tG~i~l~-~~-d~e~~~~y~l~V~a~D~g~p~--~~s~~t~~v~I~v~d~~~~P~~~~~~~~  226 (325)
                      .++|+|.++.++|.|++.+|.|++. +. |||....|.|.|+|+|+|.|+  +++  +++|+|+|.|+|++||.|.+.  
T Consensus       143 ~i~Y~i~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~a~D~g~p~~~~s~--~~~v~I~V~DvNDn~P~F~~~--  218 (322)
T 2a62_A          143 KLVYSILEGQPYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSG--TTTLTVTLTDVNDNPPKFAQS--  218 (322)
T ss_dssp             CEEEEEEECTTTEEECTTTCCEEECSSCCCGGGCSEEEEEEEEEESCSSSSCCBC--CEEEEEEECCCCCCCCCCSCS--
T ss_pred             EEEEEEccCCCCEEEecCCCEEEecccCCCcccCCeEEEEEEEEECCCCCCCcee--EEEEEEEEEecCCCCCeecCC--
Confidence            8999999988999999999999998 66 999999999999999999875  555  899999999988877766653  


Q ss_pred             cCCCCccceeeeeEeeccCC---ceEEEEEeCCCCccceEEEEEEeCCcccceEeeCCCCceEeCCCeeEEEceeCcccc
Q psy2920         227 RKSEAPHRIEKRRVTRAVRP---TKRIDFSETDGEMEGRIVFALEKETEREKFKIRDENPWITVDENGDVRVKKRWDFEE  303 (325)
Q Consensus       227 ~~~~~~~~~~~~~v~~~~~~---~~~v~a~d~D~~~~~~i~y~i~~~~~~~~F~i~~~~~~f~i~~tG~i~~~~~lD~E~  303 (325)
                       .|       ...+.|+.++   +.++.|+|.|.+.|+.++|+|..++..+.|.|+.+..    ..+|.|++.++||||.
T Consensus       219 -~y-------~~~v~En~~~gt~v~~v~A~D~D~g~n~~i~Y~i~~g~~~~~F~I~~d~~----~~tG~i~~~~~LD~E~  286 (322)
T 2a62_A          219 -LY-------HFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQ----AQDGVIRLRKPLDFET  286 (322)
T ss_dssp             -EE-------EEEECSCCSSCCEEEEEECCCSSCGGGTCCEEEEC---CCSSBCCBCCTT----TSEEEEEBCSCCCCSS
T ss_pred             -Cc-------eeEeECCCCCCcEEEEEEEEeCCCCCCceEEEEEECCCCCCcEEEeccCC----CceEEEEECCcCCccc
Confidence             23       3455555543   5678999999999999999999988888899984210    0489999999999999


Q ss_pred             CCCCceEEEEEEEecCCCC
Q psy2920         304 LGPEKTIDFWVTINNQATN  322 (325)
Q Consensus       304 ~~~~~~~~l~V~a~D~~~~  322 (325)
                      .   +.|.|+|+|+|.|.+
T Consensus       287 ~---~~y~l~V~A~D~g~p  302 (322)
T 2a62_A          287 K---KSYTLKVEAANIHID  302 (322)
T ss_dssp             C---CEEEEEEEEECCCSS
T ss_pred             C---CeEEEEEEEEECCCC
Confidence            8   899999999999854
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Back     alignment and structure
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Back     alignment and structure
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Back     alignment and structure
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Back     alignment and structure
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Back     alignment and structure
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Back     alignment and structure
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Back     alignment and structure
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Back     alignment and structure
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Back     alignment and structure
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Back     alignment and structure
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Back     alignment and structure
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Back     alignment and structure
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A Back     alignment and structure
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Back     alignment and structure
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Back     alignment and structure
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Back     alignment and structure
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Back     alignment and structure
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Back     alignment and structure
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Back     alignment and structure
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Back     alignment and structure
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Back     alignment and structure
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A Back     alignment and structure
>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B* Back     alignment and structure
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Back     alignment and structure
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Back     alignment and structure
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Back     alignment and structure
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Back     alignment and structure
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Back     alignment and structure
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Back     alignment and structure
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Back     alignment and structure
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B* Back     alignment and structure
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Back     alignment and structure
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Back     alignment and structure
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus} Back     alignment and structure
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A Back     alignment and structure
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus} Back     alignment and structure
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A Back     alignment and structure
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A Back     alignment and structure
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus} Back     alignment and structure
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus} Back     alignment and structure
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus} Back     alignment and structure
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus} Back     alignment and structure
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A Back     alignment and structure
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B Back     alignment and structure
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B Back     alignment and structure
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus} Back     alignment and structure
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus} Back     alignment and structure
>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A Back     alignment and structure
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans} Back     alignment and structure
>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A Back     alignment and structure
>3rb5_A Na/Ca exchange protein; CBD12, calcium binding and regulation, metal binding protein; 2.35A {Drosophila melanogaster} PDB: 3rb7_A 3e9u_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 325
d1l3wa2113 b.1.6.1 (A:101-213) C-cadherin ectodomain {African 1e-04
d1l3wa2113 b.1.6.1 (A:101-213) C-cadherin ectodomain {African 6e-04
d1op4a_136 b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu 0.002
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113 Back     information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 38.5 bits (88), Expect = 1e-04
 Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 12/113 (10%)

Query: 103 ENDNSPVFSQKVYRFIV------GDLKSSLNSNVSHWKKFSSIGSVSATDADGDKVAYKL 156
           +NDN P F+Q V+R  V      G    ++++        S  G +S +           
Sbjct: 1   QNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQ----DPE 56

Query: 157 AVPSNLVVIVPQTGELLLTGDPPSDDV--EYELTVEAHDLQSPSRYAREPAQV 207
               NL  I  +TG + L G     +   EY LTV+A DL+         A +
Sbjct: 57  EPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAII 109
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113 Back     information, alignment and structure
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 136 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query325
d1edha2112 E-cadherin (epithelial) {Mouse (Mus musculus) [Tax 99.81
d1l3wa2113 C-cadherin ectodomain {African clawed frog (Xenopu 99.81
d1l3wa4107 C-cadherin ectodomain {African clawed frog (Xenopu 99.76
d1ncja2114 N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 99.75
d1l3wa3113 C-cadherin ectodomain {African clawed frog (Xenopu 99.68
d1op4a_136 N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 99.66
d1l3wa4107 C-cadherin ectodomain {African clawed frog (Xenopu 99.57
d1l3wa2113 C-cadherin ectodomain {African clawed frog (Xenopu 99.55
d1edha2112 E-cadherin (epithelial) {Mouse (Mus musculus) [Tax 99.55
d1ncja2114 N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 99.54
d1op4a_136 N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 99.53
d1ncia_102 N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 99.46
d1l3wa1100 C-cadherin ectodomain {African clawed frog (Xenopu 99.46
d1l3wa1100 C-cadherin ectodomain {African clawed frog (Xenopu 99.43
d2omzb1104 E-cadherin (epithelial) {Human (Homo sapiens) [Tax 99.43
d2omzb1104 E-cadherin (epithelial) {Human (Homo sapiens) [Tax 99.42
d1ncia_102 N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 99.41
d1l3wa5107 C-cadherin ectodomain {African clawed frog (Xenopu 99.37
d1l3wa3113 C-cadherin ectodomain {African clawed frog (Xenopu 99.23
d1l3wa5107 C-cadherin ectodomain {African clawed frog (Xenopu 99.22
d1u2ca1103 Dystroglycan, N-terminal domain {Mouse (Mus muscul 92.02
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=6.2e-20  Score=140.86  Aligned_cols=98  Identities=30%  Similarity=0.379  Sum_probs=88.3

Q ss_pred             CCCCCccCcceeEEEEeccCCCCCCCcccccceeEEEEEEEEeCCC------CeEEEEEecC------CCcEEEeCCceE
Q psy2920         104 NDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADG------DKVAYKLAVP------SNLVVIVPQTGE  171 (325)
Q Consensus       104 Ndn~P~f~~~~~~~~v~E~~~~g~~~~~~~~~~~~v~~v~A~D~D~------~~v~Y~i~~~------~~~F~i~~~tG~  171 (325)
                      |||+|+|.+..|.+.|+|+.++|          +.|+++.|+|+|.      +++.|+|..+      ..+|.|++.+|.
T Consensus         1 NDn~P~F~~~~y~~~V~E~~~~g----------t~v~~v~A~D~D~g~~~~n~~v~y~i~~~~~~~~~~~~F~i~~~tG~   70 (112)
T d1edha2           1 NDNRPEFTQEVFEGSVAEGAVPG----------TSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGV   70 (112)
T ss_dssp             SCCCCEESCSEEEEEEETTCCTT----------CEEEECCEECCSCTTTCSTTCCEEEEEEEESCCSCSCSEEECTTTCE
T ss_pred             CCCCCccCCCEEEEEEECCCCCC----------CEEEEEEEEecccCCccccceEEEEEecCCccccceeEEEEecccce
Confidence            89999999999999999999999          9999999999996      3699999752      368999999999


Q ss_pred             EEEcc-C-CCCCCceEEEEEEEEeCCCCCCcceecEEEEEEEec
Q psy2920         172 LLLTG-D-PPSDDVEYELTVEAHDLQSPSRYAREPAQVWLQFNS  213 (325)
Q Consensus       172 i~l~~-~-d~e~~~~y~l~V~a~D~g~p~~~s~~t~~v~I~v~d  213 (325)
                      |++.. . |||....|.|.|+|+|.|.|++++  +++|+|.|.|
T Consensus        71 i~~~~~~lD~E~~~~y~l~V~a~D~g~~~~~~--~~~v~I~V~D  112 (112)
T d1edha2          71 ISVLTSGLDRESYPTYTLVVQAADLQGEGLST--TAKAVITVKD  112 (112)
T ss_dssp             EEECSSCCCTTTCCEEEEEEEEETGGGTSCEE--EEEEEEEEEC
T ss_pred             EEEEecccccccCcEEEEEEEEEECCCCccEE--EEEEEEEEEC
Confidence            98654 4 999999999999999999998887  8888888876
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1u2ca1 b.1.6.2 (A:58-160) Dystroglycan, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure