Psyllid ID: psy292

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450--
MADQDGGTGRIVKMEVDYAPTCDEKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINKEQMIHQRVAA
cccccccccccEEccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHcccEEEEEcccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
ccccccccccEEEccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccEEEEHHHHHHHHHHHHHHHHcccHHHHHHHHHHccEHccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccHHHcHHHHHHHHHHccHHHHccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccHHHHHHHHHHHHHccEEEEEEcccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
madqdggtgrivkmevdyaptcdekiPAAIKMAAEGKFHDAIDSLLALEKQtrtgsdmvsTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTyvdktpskEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMkedegdvtEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKintkffddekdDVQELKLKYYRLMIELDQHEGSYLATCKHYRAilttpciqsdpiqrHAVLQNVVLYLMLapydneqsdLTHRVLEDKllneiplykgllqwftnpelikwSGLRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDllglpieeTEEFLSSMVVSKTitakidrpagiinfarnkdpgeILNEWSASLNELMKLVNNTTHLINKEQMIHQRVAA
madqdggtgrivkmevdyapTCDEKIPAAIKMAAEGKFHDAIDSLLALEKQTrtgsdmvsTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECvtyvdktpskeikvklietlrtvtegkiyvevERARLTHILAKmkedegdvtEAANIIQElqvetygsmeKKEKVTLILEQMRLCLAKKDYIRTQIiskkintkffddekdDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTitakidrpagiinfarnkdpgEILNEWSASLNELMKLVNNTTHLINKEQMIHQRVAA
MADQDGGTGRIVKMEVDYAPTCDEKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINKEQMIHQRVAA
**********IVKMEVDYAPTCDEKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLIN***********
************KMEVDYAPTCDEKIPAAIKMAAEGKFHDAIDSLLA***************RILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNE**********DKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINKEQMIHQR***
MADQDGGTGRIVKMEVDYAPTCDEKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINKEQMIHQRVAA
*********RIVKMEVDYAPTCDEKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINKEQMIHQRVAA
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MADQDGGTGRIVKMEVDYAPTCDEKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINKEQMIHQRVAA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query452 2.2.26 [Sep-21-2011]
Q5RBI3456 26S proteasome non-ATPase yes N/A 0.973 0.964 0.649 1e-167
O00232456 26S proteasome non-ATPase yes N/A 0.973 0.964 0.647 1e-167
Q9D8W5456 26S proteasome non-ATPase yes N/A 0.973 0.964 0.643 1e-166
Q2KJ25456 26S proteasome non-ATPase yes N/A 0.973 0.964 0.647 1e-166
Q54UJ0447 26S proteasome non-ATPase yes N/A 0.951 0.961 0.435 1e-103
Q9UTM3443 26S proteasome regulatory yes N/A 0.902 0.920 0.438 2e-96
Q12250445 26S proteasome regulatory yes N/A 0.944 0.959 0.392 1e-83
Q9V345407 COP9 signalosome complex no N/A 0.769 0.855 0.210 3e-09
Q68FS2406 COP9 signalosome complex no N/A 0.730 0.812 0.199 3e-06
O88544406 COP9 signalosome complex no N/A 0.730 0.812 0.196 5e-06
>sp|Q5RBI3|PSD12_PONAB 26S proteasome non-ATPase regulatory subunit 12 OS=Pongo abelii GN=PSMD12 PE=2 SV=3 Back     alignment and function desciption
 Score =  589 bits (1519), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 295/454 (64%), Positives = 360/454 (79%), Gaps = 14/454 (3%)

Query: 5   DGGT----GRIVKMEVDYAPTCDEKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVS 60
           DGG+    GRIVKMEVDY+PT D+++P   K+A EG+  + I++LL+LEKQTRT SDMVS
Sbjct: 3   DGGSERADGRIVKMEVDYSPTVDQRLPECAKLAKEGRLQEVIETLLSLEKQTRTASDMVS 62

Query: 61  TGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKV 120
           T RILVA+V++C+EAK W  LNE+I +L+KRRSQLKQAV KM+Q+C TYV++     IK+
Sbjct: 63  TSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKL 122

Query: 121 KLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEK 180
           +LI+TLR VTEGKIYVE+ERARLT  LA +KE  GDV EAA+I+QELQVETYGSMEKKE+
Sbjct: 123 RLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKER 182

Query: 181 VTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSY 240
           V  ILEQMRLCLA KDYIRTQIISKKINTKFF +E  + ++LKLKYY LMI+LDQHEGSY
Sbjct: 183 VEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEE--NTEKLKLKYYNLMIQLDQHEGSY 240

Query: 241 LATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIP 300
           L+ CKHYRAI  TPCIQ++  +    L++VVLY++LAP+DNEQSDL HR+  DK L EIP
Sbjct: 241 LSICKHYRAIYDTPCIQAESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIP 300

Query: 301 LYKGLLQWFTNPELIKWSGLRQLYEEELFK-------TSVFNQSTEEGQKCFKMLKHRVV 353
            YK LL+ FT  EL++WS L + Y  EL K       T VF  STEEG+K +K LK+RVV
Sbjct: 301 KYKDLLKLFTTMELMRWSTLVEDYGMELRKGSLESPATDVFG-STEEGEKRWKDLKNRVV 359

Query: 354 EHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNK 413
           EHNIR+MAKYYTRIT++RM  LL L ++E+E FLS++VV+KTI AK+DR AGIINF R K
Sbjct: 360 EHNIRIMAKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPK 419

Query: 414 DPGEILNEWSASLNELMKLVNNTTHLINKEQMIH 447
           DP  +LN+WS  LN LM LVN TTHLI KE+MIH
Sbjct: 420 DPNNLLNDWSQKLNSLMSLVNKTTHLIAKEEMIH 453
Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.
Pongo abelii (taxid: 9601)
>sp|O00232|PSD12_HUMAN 26S proteasome non-ATPase regulatory subunit 12 OS=Homo sapiens GN=PSMD12 PE=1 SV=3 Back     alignment and function description
>sp|Q9D8W5|PSD12_MOUSE 26S proteasome non-ATPase regulatory subunit 12 OS=Mus musculus GN=Psmd12 PE=1 SV=4 Back     alignment and function description
>sp|Q2KJ25|PSD12_BOVIN 26S proteasome non-ATPase regulatory subunit 12 OS=Bos taurus GN=PSMD12 PE=2 SV=3 Back     alignment and function description
>sp|Q54UJ0|PSD12_DICDI 26S proteasome non-ATPase regulatory subunit 12 OS=Dictyostelium discoideum GN=psmD12 PE=2 SV=1 Back     alignment and function description
>sp|Q9UTM3|RPN5_SCHPO 26S proteasome regulatory subunit rpn5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpn5a PE=1 SV=1 Back     alignment and function description
>sp|Q12250|RPN5_YEAST 26S proteasome regulatory subunit RPN5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPN5 PE=1 SV=3 Back     alignment and function description
>sp|Q9V345|CSN4_DROME COP9 signalosome complex subunit 4 OS=Drosophila melanogaster GN=CSN4 PE=1 SV=1 Back     alignment and function description
>sp|Q68FS2|CSN4_RAT COP9 signalosome complex subunit 4 OS=Rattus norvegicus GN=Cops4 PE=2 SV=1 Back     alignment and function description
>sp|O88544|CSN4_MOUSE COP9 signalosome complex subunit 4 OS=Mus musculus GN=Cops4 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query452
242014164463 26S proteasome non-ATPase regulatory sub 0.977 0.954 0.758 0.0
91088257451 PREDICTED: similar to proteasome 26S non 0.977 0.980 0.710 0.0
193594276461 PREDICTED: 26S proteasome non-ATPase reg 0.982 0.963 0.664 1e-173
307178085453 26S proteasome non-ATPase regulatory sub 0.986 0.984 0.651 1e-171
156536949453 PREDICTED: 26S proteasome non-ATPase reg 0.982 0.980 0.637 1e-170
307199457453 26S proteasome non-ATPase regulatory sub 0.973 0.971 0.655 1e-170
340725123499 PREDICTED: 26S proteasome non-ATPase reg 0.980 0.887 0.646 1e-168
350416931461 PREDICTED: 26S proteasome non-ATPase reg 0.980 0.960 0.644 1e-168
383848330452 PREDICTED: 26S proteasome non-ATPase reg 0.986 0.986 0.633 1e-167
348541765456 PREDICTED: 26S proteasome non-ATPase reg 0.964 0.956 0.663 1e-166
>gi|242014164|ref|XP_002427765.1| 26S proteasome non-ATPase regulatory subunit, putative [Pediculus humanus corporis] gi|212512219|gb|EEB15027.1| 26S proteasome non-ATPase regulatory subunit, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  704 bits (1816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/451 (75%), Positives = 391/451 (86%), Gaps = 9/451 (1%)

Query: 9   GRIVKMEVDYAPTCDEKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAI 68
           G+IVKMEVDY+ TCDEKIP   K+A  GK HDA+D+LL+LEKQTRTG+DMVSTGR+LVAI
Sbjct: 12  GKIVKMEVDYSATCDEKIPECQKLAKSGKIHDALDNLLSLEKQTRTGADMVSTGRVLVAI 71

Query: 69  VQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRT 128
           VQICFEAKNW+ LNEHIT+L KRRSQLKQAV KM+QEC TYVD+TPSK+IK+KLIETLR+
Sbjct: 72  VQICFEAKNWSMLNEHITLLAKRRSQLKQAVAKMVQECCTYVDQTPSKDIKLKLIETLRS 131

Query: 129 VTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQM 188
           VTEGK+YVEVERARLTH LAKMKE+EG++TEAANIIQELQVETYGSME+ EKV LILEQM
Sbjct: 132 VTEGKMYVEVERARLTHKLAKMKEEEGNITEAANIIQELQVETYGSMERTEKVELILEQM 191

Query: 189 RLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYR 248
           RLCLAKKDYIRTQIISKKINTKFFDDEK   QELKLKYY LMIELDQHEGS+LATCKHYR
Sbjct: 192 RLCLAKKDYIRTQIISKKINTKFFDDEK--TQELKLKYYLLMIELDQHEGSFLATCKHYR 249

Query: 249 AILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQW 308
           A+L+TP IQ+DP QRH +LQNV+LYL+LAPYDNEQ+DLTHRV+EDKL++E+P YK LL+ 
Sbjct: 250 AVLSTPSIQNDPKQRHVILQNVILYLILAPYDNEQADLTHRVMEDKLIDELPAYKELLKM 309

Query: 309 FTNPELIKWSGLRQLYEEEL-------FKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMA 361
           F NPELI+WSGL  +YE  L         T VFN +TEEGQ  +K LK++VVEHNIRVMA
Sbjct: 310 FINPELIQWSGLVSVYENVLKHGTDDSPPTDVFNPNTEEGQARWKELKNKVVEHNIRVMA 369

Query: 362 KYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNE 421
           KYYTRITL RM  LL LPIEETEEFLS++VV KTI AK DRP GI+ F R+KDP +ILNE
Sbjct: 370 KYYTRITLGRMAQLLDLPIEETEEFLSNLVVKKTIEAKTDRPDGIVCFTRSKDPDDILNE 429

Query: 422 WSASLNELMKLVNNTTHLINKEQMIHQRVAA 452
           WS  LN LM+LVN TTHLINKE+MIH+ + +
Sbjct: 430 WSNHLNSLMQLVNKTTHLINKEEMIHKHLLS 460

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|91088257|ref|XP_966746.1| PREDICTED: similar to proteasome 26S non-ATPase subunit 12 [Tribolium castaneum] gi|270012153|gb|EFA08601.1| hypothetical protein TcasGA2_TC006260 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|193594276|ref|XP_001945478.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 12-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|307178085|gb|EFN66912.1| 26S proteasome non-ATPase regulatory subunit 12 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|156536949|ref|XP_001608241.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 12-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|307199457|gb|EFN80070.1| 26S proteasome non-ATPase regulatory subunit 12 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|340725123|ref|XP_003400923.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 12-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350416931|ref|XP_003491174.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 12-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|383848330|ref|XP_003699804.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 12-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|348541765|ref|XP_003458357.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 12-like isoform 1 [Oreochromis niloticus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query452
UNIPROTKB|Q5RBI3456 PSMD12 "26S proteasome non-ATP 0.973 0.964 0.649 9.8e-151
UNIPROTKB|F1NPQ0456 LOC100859465 "Uncharacterized 0.964 0.956 0.650 6.9e-150
UNIPROTKB|O00232456 PSMD12 "26S proteasome non-ATP 0.973 0.964 0.647 6.9e-150
RGD|1359305456 Psmd12 "proteasome (prosome, m 0.973 0.964 0.643 8.8e-150
MGI|MGI:1914247456 Psmd12 "proteasome (prosome, m 0.973 0.964 0.643 1.8e-149
UNIPROTKB|Q2KJ25456 PSMD12 "26S proteasome non-ATP 0.973 0.964 0.647 3e-149
UNIPROTKB|F1RSM2456 PSMD12 "Uncharacterized protei 0.973 0.964 0.643 4.8e-149
ZFIN|ZDB-GENE-030131-617456 psmd12 "proteasome (prosome, m 0.964 0.956 0.654 7.9e-149
FB|FBgn0028690502 Rpn5 "Regulatory particle non- 0.542 0.488 0.658 8e-127
ASPGD|ASPL0000076235487 AN4775 [Emericella nidulans (t 0.508 0.472 0.468 4.5e-105
UNIPROTKB|Q5RBI3 PSMD12 "26S proteasome non-ATPase regulatory subunit 12" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
 Score = 1471 (522.9 bits), Expect = 9.8e-151, P = 9.8e-151
 Identities = 295/454 (64%), Positives = 360/454 (79%)

Query:     5 DGGT----GRIVKMEVDYAPTCDEKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVS 60
             DGG+    GRIVKMEVDY+PT D+++P   K+A EG+  + I++LL+LEKQTRT SDMVS
Sbjct:     3 DGGSERADGRIVKMEVDYSPTVDQRLPECAKLAKEGRLQEVIETLLSLEKQTRTASDMVS 62

Query:    61 TGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKV 120
             T RILVA+V++C+EAK W  LNE+I +L+KRRSQLKQAV KM+Q+C TYV++     IK+
Sbjct:    63 TSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKL 122

Query:   121 KLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEK 180
             +LI+TLR VTEGKIYVE+ERARLT  LA +KE  GDV EAA+I+QELQVETYGSMEKKE+
Sbjct:   123 RLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKER 182

Query:   181 VTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSY 240
             V  ILEQMRLCLA KDYIRTQIISKKINTKFF +E  + ++LKLKYY LMI+LDQHEGSY
Sbjct:   183 VEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEE--NTEKLKLKYYNLMIQLDQHEGSY 240

Query:   241 LATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIP 300
             L+ CKHYRAI  TPCIQ++  +    L++VVLY++LAP+DNEQSDL HR+  DK L EIP
Sbjct:   241 LSICKHYRAIYDTPCIQAESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIP 300

Query:   301 LYKGLLQWFTNPELIKWSGLRQLYEEELFK-------TSVFNQSTEEGQKCFKMLKHRVV 353
              YK LL+ FT  EL++WS L + Y  EL K       T VF  STEEG+K +K LK+RVV
Sbjct:   301 KYKDLLKLFTTMELMRWSTLVEDYGMELRKGSLESPATDVFG-STEEGEKRWKDLKNRVV 359

Query:   354 EHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNK 413
             EHNIR+MAKYYTRIT++RM  LL L ++E+E FLS++VV+KTI AK+DR AGIINF R K
Sbjct:   360 EHNIRIMAKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPK 419

Query:   414 DPGEILNEWSASLNELMKLVNNTTHLINKEQMIH 447
             DP  +LN+WS  LN LM LVN TTHLI KE+MIH
Sbjct:   420 DPNNLLNDWSQKLNSLMSLVNKTTHLIAKEEMIH 453
GO:0022624 "proteasome accessory complex" evidence=ISS
UNIPROTKB|F1NPQ0 LOC100859465 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|O00232 PSMD12 "26S proteasome non-ATPase regulatory subunit 12" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1359305 Psmd12 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 12" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1914247 Psmd12 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 12" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KJ25 PSMD12 "26S proteasome non-ATPase regulatory subunit 12" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1RSM2 PSMD12 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-617 psmd12 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 12" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0028690 Rpn5 "Regulatory particle non-ATPase 5" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ASPGD|ASPL0000076235 AN4775 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9UTM3RPN5_SCHPONo assigned EC number0.43820.90260.9209yesN/A
O00232PSD12_HUMANNo assigned EC number0.64750.97340.9649yesN/A
Q54UJ0PSD12_DICDINo assigned EC number0.43570.95130.9619yesN/A
Q9D8W5PSD12_MOUSENo assigned EC number0.64310.97340.9649yesN/A
Q12250RPN5_YEASTNo assigned EC number0.39270.94460.9595yesN/A
Q5RBI3PSD12_PONABNo assigned EC number0.64970.97340.9649yesN/A
Q2KJ25PSD12_BOVINNo assigned EC number0.64750.97340.9649yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query452
COG5071439 COG5071, RPN5, 26S proteasome regulatory complex c 1e-118
pfam01399100 pfam01399, PCI, PCI domain 6e-15
smart0075388 smart00753, PAM, PCI/PINT associated module 7e-14
smart0008888 smart00088, PINT, motif in proteasome subunits, In 7e-14
>gnl|CDD|227403 COG5071, RPN5, 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
 Score =  353 bits (906), Expect = e-118
 Identities = 186/436 (42%), Positives = 274/436 (62%), Gaps = 4/436 (0%)

Query: 12  VKMEVDYAPTCDEKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQI 71
            K EVDY+    E   + +           ++ LL  EK+ R  SD  +  ++L+ I  +
Sbjct: 3   QKPEVDYSEKFAELQKS-LNNLNTIDIDANLEKLLIFEKKVRQASDTSTNTKVLIYIADL 61

Query: 72  CFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTE 131
            F A ++  LNE +  L K+  QLKQ++  MIQ  + Y+      + K+ LIETLRTVTE
Sbjct: 62  LFSAGDFQGLNEQLVSLFKKHGQLKQSITSMIQHVMEYLKGIDDLKTKINLIETLRTVTE 121

Query: 132 GKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLC 191
           GKI+VEVERARLT +L+++KE++GD+  A +I+    VETYGS +  EKV  ILEQ+RL 
Sbjct: 122 GKIFVEVERARLTQLLSQIKEEQGDIKSAQDILCNEPVETYGSFDLSEKVAFILEQVRLF 181

Query: 192 LAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAIL 251
           L + DY      +KKIN KFF  EK+DVQ LKLKYY L + +  H+ +YL  CK+YRA+ 
Sbjct: 182 LLRSDYYMASTYTKKINKKFF--EKEDVQSLKLKYYELKVRIGLHDRAYLDVCKYYRAVY 239

Query: 252 TTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTN 311
            T  +Q DP +   VL NVV + +L PYDNEQ+DL H++  D  LN +PL + L++ F  
Sbjct: 240 DTAVVQEDPAKWKEVLSNVVCFALLTPYDNEQADLLHKINADHKLNSLPLLQQLVKCFIV 299

Query: 312 PELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQR 371
            EL++W  + ++Y   L +++VF  + E+G+K +  L+ RV+EHNIRV+A YY+RI   R
Sbjct: 300 NELMRWPKVAEIYGSAL-RSNVFAFNDEKGEKRWSDLRKRVIEHNIRVIANYYSRIHCSR 358

Query: 372 MCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMK 431
           +  LL +   ETE+F+S +V      AKI+RPA II+F ++++  E LNEW +++ EL+ 
Sbjct: 359 LGVLLDMSPSETEQFISDLVNKGHFYAKINRPAQIISFEKSQNVQEQLNEWGSNVTELLG 418

Query: 432 LVNNTTHLINKEQMIH 447
            +    HLI KE+M++
Sbjct: 419 KLEKVRHLIIKEEMMN 434

Length = 439
>gnl|CDD|216479 pfam01399, PCI, PCI domain Back     alignment and domain information
>gnl|CDD|214803 smart00753, PAM, PCI/PINT associated module Back     alignment and domain information
>gnl|CDD|214509 smart00088, PINT, motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 452
KOG1498|consensus439 100.0
COG5071439 RPN5 26S proteasome regulatory complex component [ 100.0
KOG1497|consensus399 100.0
KOG1463|consensus411 100.0
KOG1464|consensus440 100.0
COG5159421 RPN6 26S proteasome regulatory complex component [ 100.0
KOG0687|consensus393 100.0
COG5187412 RPN7 26S proteasome regulatory complex component, 99.96
KOG2908|consensus380 99.76
PF01399105 PCI: PCI domain; InterPro: IPR000717 A homology do 99.66
smart0075388 PAM PCI/PINT associated module. 99.5
smart0008888 PINT motif in proteasome subunits, Int-6, Nip-1 an 99.5
KOG2581|consensus493 99.46
PF10602177 RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 99.43
KOG0686|consensus466 99.35
KOG2582|consensus422 99.1
KOG2758|consensus432 98.69
KOG1076|consensus843 98.62
KOG2753|consensus378 97.98
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 97.53
KOG2688|consensus394 97.3
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 97.17
PF10255404 Paf67: RNA polymerase I-associated factor PAF67; I 97.04
COG5600413 Transcription-associated recombination protein [DN 97.03
KOG1840|consensus508 96.76
TIGR03302235 OM_YfiO outer membrane assembly lipoprotein YfiO. 96.74
PRK11788389 tetratricopeptide repeat protein; Provisional 96.66
KOG2003|consensus840 96.66
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 96.64
TIGR02917 899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 96.6
PRK11788389 tetratricopeptide repeat protein; Provisional 96.53
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 96.51
KOG2072|consensus 988 96.39
TIGR02917899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 96.15
PF10075143 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro 95.98
PRK10747398 putative protoheme IX biogenesis protein; Provisio 95.95
COG3071400 HemY Uncharacterized enzyme of heme biosynthesis [ 95.92
TIGR00540409 hemY_coli hemY protein. This is an uncharacterized 95.77
PF13525203 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M 95.5
COG4105254 ComL DNA uptake lipoprotein [General function pred 95.34
PRK10866243 outer membrane biogenesis protein BamD; Provisiona 94.74
PRK11447 1157 cellulose synthase subunit BcsC; Provisional 94.58
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 94.56
COG3063250 PilF Tfp pilus assembly protein PilF [Cell motilit 94.54
COG2956389 Predicted N-acetylglucosaminyl transferase [Carboh 94.45
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 94.35
KOG2003|consensus840 94.19
PF0901269 FeoC: FeoC like transcriptional regulator; InterPr 94.13
KOG1840|consensus508 94.02
TIGR00990615 3a0801s09 mitochondrial precursor proteins import 93.61
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 93.45
TIGR00990615 3a0801s09 mitochondrial precursor proteins import 93.34
PRK10049 765 pgaA outer membrane protein PgaA; Provisional 93.06
PLN03218 1060 maturation of RBCL 1; Provisional 93.0
PLN03218 1060 maturation of RBCL 1; Provisional 92.61
PRK11447 1157 cellulose synthase subunit BcsC; Provisional 92.3
KOG1586|consensus288 92.12
PF09756188 DDRGK: DDRGK domain; InterPro: IPR019153 This is a 92.06
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 91.78
PF08784102 RPA_C: Replication protein A C terminal; InterPro: 91.77
PRK14574 822 hmsH outer membrane protein; Provisional 91.69
PF12569517 NARP1: NMDA receptor-regulated protein 1 ; InterPr 91.51
KOG1941|consensus518 91.45
cd00189100 TPR Tetratricopeptide repeat domain; typically con 91.23
PRK10049 765 pgaA outer membrane protein PgaA; Provisional 91.14
PRK02603172 photosystem I assembly protein Ycf3; Provisional 90.94
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 90.67
PF09295395 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter 90.19
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 90.11
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 90.07
COG3107 604 LppC Putative lipoprotein [General function predic 89.76
TIGR02552135 LcrH_SycD type III secretion low calcium response 89.44
PRK14720 906 transcript cleavage factor/unknown domain fusion p 89.25
PLN03081697 pentatricopeptide (PPR) repeat-containing protein; 89.11
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 88.29
PF04733290 Coatomer_E: Coatomer epsilon subunit; InterPro: IP 87.52
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 87.12
KOG2376|consensus 652 86.85
PF04348 536 LppC: LppC putative lipoprotein; InterPro: IPR0074 86.69
PRK15174656 Vi polysaccharide export protein VexE; Provisional 86.59
PF10345 608 Cohesin_load: Cohesin loading factor; InterPro: IP 86.09
PLN03081697 pentatricopeptide (PPR) repeat-containing protein; 86.03
TIGR0350444 FimV_Cterm FimV C-terminal domain. This protein is 85.63
KOG1070|consensus1710 84.39
PF1455968 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN 84.29
KOG2076|consensus 895 84.17
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 83.54
CHL00033168 ycf3 photosystem I assembly protein Ycf3 83.23
TIGR03302235 OM_YfiO outer membrane assembly lipoprotein YfiO. 82.85
PF1280262 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP 82.62
KOG1156|consensus 700 82.61
PF13512142 TPR_18: Tetratricopeptide repeat 82.49
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 82.48
PF0822057 HTH_DeoR: DeoR-like helix-turn-helix domain; Inter 81.96
PLN03088356 SGT1, suppressor of G2 allele of SKP1; Provisional 81.65
PF03399204 SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; I 81.4
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 80.74
>KOG1498|consensus Back     alignment and domain information 
Probab=100.00  E-value=4e-104  Score=770.75  Aligned_cols=439  Identities=56%  Similarity=0.897  Sum_probs=428.1

Q ss_pred             cccccccccchhhhhhhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q psy292           10 RIVKMEVDYAPTCDEKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLT   89 (452)
Q Consensus        10 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~   89 (452)
                      +++||++|||+.+++.+|++.+++ .+++++|++.|+.+||++|+++|..++.+++..|+++||..++|+.|++++..|+
T Consensus         1 ~~~k~e~dys~~~~e~~~~~~~la-~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Ls   79 (439)
T KOG1498|consen    1 RIQKMEVDYSEKVDELLPKANNLA-QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLS   79 (439)
T ss_pred             CCcccccchHHHHHHhhHhhhhhh-hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            367999999999999999999999 5569999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy292           90 KRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQV  169 (452)
Q Consensus        90 ~~~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~  169 (452)
                      +||||+|+||++||+++|.|++++||.++++++|+||+.+|+||||+|+||+|++..||+++|++||+.+|+++++++||
T Consensus        80 kkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li~tLr~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~V  159 (439)
T KOG1498|consen   80 KKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLIETLRTVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQV  159 (439)
T ss_pred             HHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy292          170 ETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRA  249 (452)
Q Consensus       170 Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e  249 (452)
                      ||||+|+..+|++|+|||||||+..+||++|.++++||+.++|++++.  +++|+.||.+|++++.|.+.|+++|++|++
T Consensus       160 ETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~--~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yra  237 (439)
T KOG1498|consen  160 ETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDV--QELKLKYYELMIRLGLHDRAYLNVCRSYRA  237 (439)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccH--HHHHHHHHHHHHHhcccccchhhHHHHHHH
Confidence            999999999999999999999999999999999999999999998886  999999999999999999999999999999


Q ss_pred             HHcCCCCCCCHHHHHHHHHHHHHHHHhCCCChhhhHhHHhhhhhhccCCchHHHHHHHHhcCCcccCchhHHHHHHHHhc
Q psy292          250 ILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELF  329 (452)
Q Consensus       250 ~~~t~~~~~d~~~~~~~Lk~~vl~~ILa~~~~~~~~ll~~~~~~~~~~~ip~~~~L~~~f~~~~Li~~~~~~~~~~~~L~  329 (452)
                      +|+++.+++||++|...|..+|+|++|||++++++++++++..|+.+.++|.+..+++.|.+++|++|+.+.+.|+..|.
T Consensus       238 iy~t~~vk~d~~kw~~vL~~iv~f~~LAp~dneQsdll~~is~dKkL~e~p~~k~lLklfv~~EL~rw~s~~~~yg~~l~  317 (439)
T KOG1498|consen  238 IYDTGNVKEDPEKWIEVLRSIVSFCVLAPHDNEQSDLLARISNDKKLSELPDYKELLKLFVTMELIRWVSLVESYGDELR  317 (439)
T ss_pred             HhcccccccChhhhhhhhhhheeEEeecCCCcHHHHHHHHHhcccccccCccHHHHHHHHHhcceeeehhHhhhhHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988899999998


Q ss_pred             cCCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEe
Q psy292          330 KTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINF  409 (452)
Q Consensus       330 ~~~~~~~~~~~g~~~~~~L~~~viEhNi~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f  409 (452)
                      ...+|. ....|+.||++|+.||+||||+++++||+||++.|+|+++|+|+++.|.+||.||..|.++||||||+|||.|
T Consensus       318 ~~~~~~-~~~~gek~~~dL~~RIiEHNiRiiA~yYSrIt~~rl~eLLdl~~ee~E~~LS~lv~t~ti~aKidrpsgII~F  396 (439)
T KOG1498|consen  318 TNDFFD-GGEEGEKRWSDLKLRIIEHNIRIIAKYYSRITLKRLAELLDLPVEEMEKFLSDLVVTGTIYAKIDRPSGIINF  396 (439)
T ss_pred             hccccc-ccchhhhHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHhCCCHHHHHHHHHHHHhccceEEEecCCCceEEE
Confidence            886664 5678899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCChhHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhchhhhC
Q psy292          410 ARNKDPGEILNEWSASLNELMKLVNNTTHLINKEQMIHQRVAA  452 (452)
Q Consensus       410 ~~~~~~~~~l~~W~~~i~~ll~~v~k~~~lI~ke~~~~~~~~~  452 (452)
                      ..++++++.||.|+.|+++|+++++|+||+|+||+|||++.++
T Consensus       397 ~k~K~~~~~LneW~~nve~L~~ll~K~~HLI~KEemmhsi~~~  439 (439)
T KOG1498|consen  397 QKVKDSNEILNEWASNVEKLLGLLEKVSHLIHKEEMMHSIQKA  439 (439)
T ss_pred             EecccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999998764

>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1497|consensus Back     alignment and domain information
>KOG1463|consensus Back     alignment and domain information
>KOG1464|consensus Back     alignment and domain information
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0687|consensus Back     alignment and domain information
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2908|consensus Back     alignment and domain information
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins Back     alignment and domain information
>smart00753 PAM PCI/PINT associated module Back     alignment and domain information
>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 Back     alignment and domain information
>KOG2581|consensus Back     alignment and domain information
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome Back     alignment and domain information
>KOG0686|consensus Back     alignment and domain information
>KOG2582|consensus Back     alignment and domain information
>KOG2758|consensus Back     alignment and domain information
>KOG1076|consensus Back     alignment and domain information
>KOG2753|consensus Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>KOG2688|consensus Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] Back     alignment and domain information
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1840|consensus Back     alignment and domain information
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>KOG2003|consensus Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>KOG2072|consensus Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8 Back     alignment and domain information
>PRK10747 putative protoheme IX biogenesis protein; Provisional Back     alignment and domain information
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>TIGR00540 hemY_coli hemY protein Back     alignment and domain information
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A Back     alignment and domain information
>COG4105 ComL DNA uptake lipoprotein [General function prediction only] Back     alignment and domain information
>PRK10866 outer membrane biogenesis protein BamD; Provisional Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>KOG2003|consensus Back     alignment and domain information
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif Back     alignment and domain information
>KOG1840|consensus Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>PRK10049 pgaA outer membrane protein PgaA; Provisional Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>KOG1586|consensus Back     alignment and domain information
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A) Back     alignment and domain information
>PRK14574 hmsH outer membrane protein; Provisional Back     alignment and domain information
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala Back     alignment and domain information
>KOG1941|consensus Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>PRK10049 pgaA outer membrane protein PgaA; Provisional Back     alignment and domain information
>PRK02603 photosystem I assembly protein Ycf3; Provisional Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>COG3107 LppC Putative lipoprotein [General function prediction only] Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>KOG2376|consensus Back     alignment and domain information
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown Back     alignment and domain information
>PRK15174 Vi polysaccharide export protein VexE; Provisional Back     alignment and domain information
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>TIGR03504 FimV_Cterm FimV C-terminal domain Back     alignment and domain information
>KOG1070|consensus Back     alignment and domain information
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A Back     alignment and domain information
>KOG2076|consensus Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>CHL00033 ycf3 photosystem I assembly protein Ycf3 Back     alignment and domain information
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO Back     alignment and domain information
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B Back     alignment and domain information
>KOG1156|consensus Back     alignment and domain information
>PF13512 TPR_18: Tetratricopeptide repeat Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>PF03399 SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; InterPro: IPR005062 This large family includes diverse proteins involved in large complexes [, , ] Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query452
4b4t_P445 Near-Atomic Resolution Structural Model Of The Yeas 7e-85
1ufm_A84 Solution Structure Of The Pci Domain Length = 84 5e-04
4b4t_S523 Near-Atomic Resolution Structural Model Of The Yeas 8e-04
>pdb|4B4T|P Chain P, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 445 Back     alignment and structure 
Iteration: 1

 Score =  310 bits (795), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 174/443 (39%), Positives = 281/443 (63%), Gaps = 16/443 (3%)
Query: 12  VKMEVDYAPTCDEKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQI 71
           +K + DY+    E+ P  I   A+   + A+D LL LEK+TR  SD+ S+  +L  IV +
Sbjct: 7   IKADKDYSQILKEEFPK-IDSLAQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDL 65
Query: 72  CFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEI--KVKLIETLRTV 129
                 W  LNE +T+L+K+  QLK ++  MIQ+ + Y+  + S ++  ++ +IET+R V
Sbjct: 66  LASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVV 125
Query: 130 TEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMR 189
           TE KI+VEVERAR+T  L ++K++EG + EAA+I+ ELQVETYGSME  EK+  ILEQM 
Sbjct: 126 TENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185
Query: 190 LCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRA 249
           L + K DY +  ++S+KI  K F + K   + LKL+YY L++++  H+  YL   ++ + 
Sbjct: 186 LSILKGDYSQATVLSRKILKKTFKNPK--YESLKLEYYNLLVKISLHKREYLEVAQYLQE 243
Query: 250 ILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWF 309
           I  T  I+SD  +   VL ++V +L+L+PY N Q+DL H++  D  L ++   + L++ F
Sbjct: 244 IYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLF 303
Query: 310 TNPELIKWSGLRQLYEEELFKTSVFNQ-----STEEGQKCFKMLKHRVVEHNIRVMAKYY 364
           T  EL++W  +++ YE       V N+       E  +  ++ L+ RV+EHN+RV+++YY
Sbjct: 304 TTNELMRWPIVQKTYE------PVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYY 357
Query: 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSA 424
           +RITL R+ +LL L   +TE ++S +V    I AK++RPA I+NF + K+  ++LNEWS 
Sbjct: 358 SRITLLRLNELLDLTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSH 417
Query: 425 SLNELMKLVNNTTHLINKEQMIH 447
           +++EL++ +    HLI KE+++H
Sbjct: 418 NVDELLEHIETIGHLITKEEIMH 440
>pdb|1UFM|A Chain A, Solution Structure Of The Pci Domain Length = 84 Back     alignment and structure
>pdb|4B4T|S Chain S, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 523 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query452
3txn_A394 26S proteasome regulatory complex subunit P42B; PC 6e-36
1ufm_A84 COP9 complex subunit 4; helix-turn-helix, structur 3e-27
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-14
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Length = 394 Back     alignment and structure
 Score =  136 bits (342), Expect = 6e-36
 Identities = 53/384 (13%), Positives = 134/384 (34%), Gaps = 14/384 (3%)

Query: 65  LVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVV-KMIQECVTYVDKTP-SKEIKVKL 122
           ++   ++  +      L + I +     S + +A   K+++  V           I+V+L
Sbjct: 22  ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQL 81

Query: 123 IETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVT 182
            +      + +      R  L   L  +  D    TEA  +  +L  E     +K   V 
Sbjct: 82  CKDCIEWAK-QEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVE 140

Query: 183 LILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLA 242
           + L + +   A  +  + +       T           +  L     ++     E  +  
Sbjct: 141 VQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHA-ADERDFKT 199

Query: 243 TCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLY 302
              ++                 ++   ++  +ML   D+    ++ ++       +I   
Sbjct: 200 AFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAM 259

Query: 303 KGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAK 362
           K + +      L  +    + Y++EL +  +        Q     L   ++E N+  + +
Sbjct: 260 KSVAEASHKRSLADFQAALKEYKKELAEDVIV-------QAHLGTLYDTMLEQNLCRIIE 312

Query: 363 YYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEW 422
            Y+R+ +  + + + LP+ + E+ LS M++ K  +  +D+  G++         +     
Sbjct: 313 PYSRVQVAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEETPVDKTYERV 372

Query: 423 SASLNELMKLVNNTTHLINKEQMI 446
             ++  + K+V+    L  K + +
Sbjct: 373 LETIQSMGKVVDT---LYQKAKKL 393
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47 Length = 84 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query452
4b4t_P445 26S proteasome regulatory subunit RPN5; hydrolase, 100.0
3txn_A394 26S proteasome regulatory complex subunit P42B; PC 100.0
4b4t_Q434 26S proteasome regulatory subunit RPN6; hydrolase, 100.0
4b4t_R429 RPN7, 26S proteasome regulatory subunit RPN7; hydr 100.0
4b4t_O393 26S proteasome regulatory subunit RPN9; hydrolase, 99.9
4b4t_S523 RPN3, 26S proteasome regulatory subunit RPN3; hydr 99.85
1ufm_A84 COP9 complex subunit 4; helix-turn-helix, structur 99.83
3t5x_A203 PCI domain-containing protein 2; PCI, mRNA nuclear 99.54
3t5v_B455 Nuclear mRNA export protein THP1; PCI, mRNA nuclea 99.39
3chm_A169 COP9 signalosome complex subunit 7; heat/ARM repea 98.45
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 98.29
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 98.21
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 98.15
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 98.13
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 98.08
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 98.04
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 98.0
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 97.97
4b0z_A229 RPN12, 26S proteasome regulatory subunit RPN12; pr 97.97
3q15_A378 PSP28, response regulator aspartate phosphatase H; 97.82
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 97.82
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 97.78
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 97.54
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 97.49
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 97.48
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 97.42
3u3w_A293 Transcriptional activator PLCR protein; ternary co 97.38
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 97.28
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 97.22
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 97.17
3q15_A378 PSP28, response regulator aspartate phosphatase H; 97.14
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 97.09
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 97.08
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 97.0
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 97.0
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 96.99
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 96.99
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 96.95
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 96.82
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 96.81
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 96.81
4eqf_A365 PEX5-related protein; accessory protein, tetratric 96.77
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 96.72
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 96.72
3u3w_A293 Transcriptional activator PLCR protein; ternary co 96.7
4eqf_A365 PEX5-related protein; accessory protein, tetratric 96.69
3u4t_A272 TPR repeat-containing protein; structural genomics 96.67
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 96.62
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 96.61
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 96.61
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 96.54
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 96.51
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 96.48
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 96.39
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 96.32
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 96.31
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 96.27
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 96.24
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 96.23
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 96.18
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 96.17
2gw1_A514 Mitochondrial precursor proteins import receptor; 96.08
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 96.01
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 96.0
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 95.8
1hz4_A373 MALT regulatory protein; two-helix bundles, helix 95.67
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 95.65
2gw1_A514 Mitochondrial precursor proteins import receptor; 95.63
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 95.6
4b4t_Q434 26S proteasome regulatory subunit RPN6; hydrolase, 95.57
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 95.5
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 95.46
1hz4_A373 MALT regulatory protein; two-helix bundles, helix 95.33
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 95.22
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 95.18
4i17_A228 Hypothetical protein; TPR repeats protein, structu 95.15
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 95.14
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 95.05
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 95.0
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 94.86
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 94.84
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 94.8
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 94.77
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 94.77
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 94.73
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 94.65
3u4t_A272 TPR repeat-containing protein; structural genomics 94.52
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 94.47
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 94.33
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 94.13
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 94.06
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 94.02
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 94.02
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 93.66
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 93.59
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 93.56
4abn_A474 Tetratricopeptide repeat protein 5; P53 cofactor, 93.45
3mv2_B310 Coatomer subunit epsilon; vesicular membrane coat 93.4
3q49_B137 STIP1 homology and U box-containing protein 1; E3 93.34
4i17_A228 Hypothetical protein; TPR repeats protein, structu 93.24
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 93.11
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 93.11
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 92.86
3qww_A433 SET and MYND domain-containing protein 2; methyltr 92.8
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 92.79
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 92.77
3lpz_A336 GET4 (YOR164C homolog); protein targeting, tail-an 92.69
2r5s_A176 Uncharacterized protein VP0806; APC090868.1, vibri 92.65
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 92.59
2fbn_A198 70 kDa peptidylprolyl isomerase, putative; sulfur 92.57
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 92.57
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 92.57
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 92.52
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 92.45
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 92.26
4abn_A474 Tetratricopeptide repeat protein 5; P53 cofactor, 92.24
3qou_A287 Protein YBBN; thioredoxin-like fold, tetratricopep 92.03
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 92.01
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 91.86
1wi9_A72 Protein C20ORF116 homolog; helix-turn-helix motif, 91.76
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 91.73
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 91.64
1ihg_A370 Cyclophilin 40; ppiase immunophilin tetratricopept 91.48
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 91.35
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 91.2
4gyw_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 90.63
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 89.99
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 89.89
1p5q_A336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 89.64
3qww_A433 SET and MYND domain-containing protein 2; methyltr 89.3
4gyw_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 89.22
1kt0_A457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 89.01
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 88.69
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 88.44
2wpv_A312 GET4, UPF0363 protein YOR164C; golgi-ER traffickin 88.14
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 87.89
1sfx_A109 Conserved hypothetical protein AF2008; structural 87.29
1qgp_A77 Protein (double stranded RNA adenosine deaminase); 86.81
4g1t_A 472 Interferon-induced protein with tetratricopeptide 86.75
3k9i_A117 BH0479 protein; putative protein binding protein, 86.69
1rz4_A226 Eukaryotic translation initiation factor 3 subuni; 85.89
2l6j_A111 TPR repeat-containing protein associated with HSP; 85.67
3qou_A287 Protein YBBN; thioredoxin-like fold, tetratricopep 85.43
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 85.38
4f3v_A282 ESX-1 secretion system protein ECCA1; tetratricope 84.82
1xn7_A78 Hypothetical protein YHGG; alpha+beta, GFT structu 84.69
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 84.25
3ffl_A167 Anaphase-promoting complex subunit 7; tetratricope 84.2
2k02_A87 Ferrous iron transport protein C; FEOC, iron-sulfu 84.2
1ihg_A370 Cyclophilin 40; ppiase immunophilin tetratricopept 83.8
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 83.44
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 83.44
1ub9_A100 Hypothetical protein PH1061; helix-turn-helix moti 82.87
2pzi_A681 Probable serine/threonine-protein kinase PKNG; ATP 82.63
1qbj_A81 Protein (double-stranded RNA specific adenosine D 82.36
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 81.94
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 81.91
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 81.42
2pzi_A681 Probable serine/threonine-protein kinase PKNG; ATP 80.98
2if4_A338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 80.56
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 80.12
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=6.1e-97  Score=771.46  Aligned_cols=442  Identities=39%  Similarity=0.662  Sum_probs=358.4

Q ss_pred             CCCCcccccccccchhhhhhhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHH
Q psy292            6 GGTGRIVKMEVDYAPTCDEKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHI   85 (452)
Q Consensus         6 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~   85 (452)
                      ||++.|+|||+|||+++++++++|+.+++ |++++|++.|+.+||++|+++|+.|+++++.+|+++|++.|+|+.|++++
T Consensus         1 ms~~~~~k~e~D~s~~~~~~~~~~~~l~~-~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i   79 (445)
T 4b4t_P            1 MSRDAPIKADKDYSQILKEEFPKIDSLAQ-NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQL   79 (445)
T ss_dssp             ---------------------------CH-HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             CCCCCccccccchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            89999999999999999999999999987 56999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHhhhcCCCCH--HHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q psy292           86 TMLTKRRSQLKQAVVKMIQECVTYVDKTPSK--EIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANI  163 (452)
Q Consensus        86 ~~l~~~~~q~k~av~~~v~~~~~~~~~~~~~--~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~i  163 (452)
                      ..|+++|||+|+++++||+.+++|++++|+.  +.+..++++|+.+++||||||+||+|++.+||++|++.|++.+|+++
T Consensus        80 ~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~i  159 (445)
T 4b4t_P           80 TLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADI  159 (445)
T ss_dssp             HHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence            9999999999999999999999999988864  67889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHH
Q psy292          164 IQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLAT  243 (452)
Q Consensus       164 L~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea  243 (452)
                      |+++++||+++|++.+|++++|+|+|+|++.+||++|..+++|++++++..+++  ++++++||.|+|+++.++++|++|
T Consensus       160 L~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~--~~lk~~~~~~~~~~~~~e~~y~~a  237 (445)
T 4b4t_P          160 LCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKY--ESLKLEYYNLLVKISLHKREYLEV  237 (445)
T ss_dssp             HHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCC--HHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCc--HHHHHHHHHHHHHHHHHhhhHHHH
Confidence            999999999999999999999999999999999999999999999988776666  999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCCChhhhHhHHhhhhhhccCCchHHHHHHHHhcCCcccCchhHHHH
Q psy292          244 CKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQL  323 (452)
Q Consensus       244 ~~~y~e~~~t~~~~~d~~~~~~~Lk~~vl~~ILa~~~~~~~~ll~~~~~~~~~~~ip~~~~L~~~f~~~~Li~~~~~~~~  323 (452)
                      |++|+++|++|.+.+|+.++..+|+++|+|.||+|++|++++++++++.+++++++|.|+.|+++|.+++|++|+.+...
T Consensus       238 ~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~  317 (445)
T 4b4t_P          238 AQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKT  317 (445)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHH
T ss_pred             HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHH
Confidence            99999999999998888888999999999999999999999999999999999999999999999999999999999899


Q ss_pred             HHHHhccCCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccC
Q psy292          324 YEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRP  403 (452)
Q Consensus       324 ~~~~L~~~~~~~~~~~~g~~~~~~L~~~viEhNi~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~  403 (452)
                      |+..|.+|+++. ..+.+..||+.|+++++||||+++++||++|+|++||++||+|++++|..+++||.+|+|+|+||||
T Consensus       318 ~~~~L~~~~~~~-~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l~~~evE~~ls~mI~~g~i~akIDq~  396 (445)
T 4b4t_P          318 YEPVLNEDDLAF-GGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLTESQTETYISDLVNQGIIYAKVNRP  396 (445)
T ss_dssp             TCSSTTTCCSSC-CCSCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCEEETT
T ss_pred             HHHHhcccchhh-hcchhhHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEcCC
Confidence            999999999874 3344567999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEeccCCChhHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhchhhh
Q psy292          404 AGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINKEQMIHQRVA  451 (452)
Q Consensus       404 ~giV~f~~~~~~~~~l~~W~~~i~~ll~~v~k~~~lI~ke~~~~~~~~  451 (452)
                      +|+|+|++++++++.|++|+++|++||+.|++++|+|+||+|||++.+
T Consensus       397 ~giV~F~~~~~~~~~l~~W~~~i~~l~~~v~k~~~lI~kE~m~~~~~~  444 (445)
T 4b4t_P          397 AKIVNFEKPKNSSQLLNEWSHNVDELLEHIETIGHLITKEEIMHGLQA  444 (445)
T ss_dssp             TTEEEC------------------------------------------
T ss_pred             CCEEEECCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999999999999999999864
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47 Back     alignment and structure
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens} Back     alignment and structure
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana} Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe} Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Back     alignment and structure
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} Back     alignment and structure
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Back     alignment and structure
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47 Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50 Back     alignment and structure
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19 Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Back     alignment and structure
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18 Back     alignment and structure
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62 Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} Back     alignment and structure
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp} Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28 Back     alignment and structure
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 452
d1ufma_84 a.4.5.47 (A:) COP9 signalosome complex subunit 4, 4e-22
>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 84 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PCI domain (PINT motif)
domain: COP9 signalosome complex subunit 4, GSN4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 87.9 bits (218), Expect = 4e-22
 Identities = 20/68 (29%), Positives = 35/68 (51%)

Query: 347 MLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 406
           +L   V+EHN+   +K Y  IT + +  LL +P  + E+  S M+    +   ID+  GI
Sbjct: 11  ILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGI 70

Query: 407 INFARNKD 414
           ++F   + 
Sbjct: 71  VHFETREA 78

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query452
d1ufma_84 COP9 signalosome complex subunit 4, GSN4 {Mouse (M 99.78
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 97.67
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 97.53
d1hz4a_366 Transcription factor MalT domain III {Escherichia 97.46
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 96.87
d1hz4a_366 Transcription factor MalT domain III {Escherichia 96.64
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 96.24
d1elra_128 Hop {Human (Homo sapiens) [TaxId: 9606]} 95.77
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 95.36
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 94.35
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 92.63
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 92.61
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 92.33
d1wi9a_72 Hypothetical protein C20orf116 homolog {Mouse (Mus 91.8
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 91.35
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 90.96
d1sfxa_109 Hypothetical protein AF2008 {Archaeoglobus fulgidu 89.92
d1ub9a_100 Hypothetical protein PH1061 {Archaeon Pyrococcus h 89.85
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 89.17
d1kt1a1168 FKBP51, C-terminal domain {Monkey (Saimiri bolivie 88.58
d1dpua_69 C-terminal domain of RPA32 {Human (Homo sapiens) [ 88.54
d1kt1a1168 FKBP51, C-terminal domain {Monkey (Saimiri bolivie 87.79
d2cfxa163 Transcriptional regulator LrpC {Bacillus subtilis 87.32
d1z05a171 Transcriptional regulator VC2007 N-terminal domain 87.01
d2hr2a1156 Hypothetical protein CT2138 {Chlorobium tepidum [T 86.27
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 86.24
d1z6ra170 Mlc protein N-terminal domain {Escherichia coli [T 85.61
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 84.67
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 84.41
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 84.22
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 83.08
d2cg4a163 Regulatory protein AsnC {Escherichia coli [TaxId: 82.77
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 81.13
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 80.87
d1i1ga160 LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} 80.8
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 80.49
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 80.38
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 80.35
>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PCI domain (PINT motif)
domain: COP9 signalosome complex subunit 4, GSN4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=7e-20  Score=144.12  Aligned_cols=69  Identities=29%  Similarity=0.543  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHHHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEeccCCC
Q psy292          346 KMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKD  414 (452)
Q Consensus       346 ~~L~~~viEhNi~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~~~~~  414 (452)
                      +.|+++++||||+++++||++|+|++||++|++|++++|..|++||.+|+|+|+|||++|+|+|+.++.
T Consensus        10 t~L~~~i~Ehni~~is~~Y~~Isl~~la~~l~l~~~evE~~l~~mI~~~~i~akIDq~~g~V~F~~~e~   78 (84)
T d1ufma_          10 SILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREA   78 (84)
T ss_dssp             CCCCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCSSC
T ss_pred             HHHHHHHHHHHHHHHHHhhceeeHHHHHHHHCCCHHHHHHHHHHHHhcCeEEEEEeCCCCEEEECCCCc
Confidence            578999999999999999999999999999999999999999999999999999999999999998864
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure