Psyllid ID: psy294

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410------
MDGTRLLQLRNPWGHFSWKGDWSDDSNLWTPELRATLMPRGASDGVFWISFEDVLKHAYSVLDVRDMDGTRLLQLRNPWGHFSWKGDWSDDSNLWTPELRATLMPRGASDGVFWISFEDVLKYFDCIDICKVHCAGWNEGHFTGWNEVRLSGTLPPLCSVRHLSCVLLTVLEPTEAEFTLFQEGQRNWEKSKRSPLDLCVVILRNKLSSTSVRGFVGCHKMLERDIYLVVCLAFNHWHTGISDTAQYPEYLLAIHSSKPVLVEQIEPSEYILADTIISLTLAKGQRHEGRERMTAYYLTTGWAGLVVMVENRYENRWIHVRCDCGIFWVFCDCHQSYNVVSTRGQLKTLDCVPPLHRQVIIVLTQLEGSGGFSVSHHLTHRLASRGGLHDWGPSGVSHLPPLDPGVEGLHSPRLIT
cccEEEEEEEccccccccccccccccccccHHHHHHHcccccccccEEEEccccccEEEEEEEEEEEccEEEEEEEccccccccccccccccccccHHHHHHccccccccccEEEEHHHHHHcccEEEEEEEccccccccccccEEEEEEEcccccccccccccEEEEEEccccEEEEEEEEcccccccccccccccEEEEEEEEccccccccEEEEEEEEcccccEEEEEEccccEEEEEccccccccEEEEEEccccEEEEEEcccHHHHHHHHHHHHHHcccccccccccEEEEEcccccEEEEEEEccccccEEEEEEEEccEEEEEcccccEEEEEccccEEEEEcccccccEEEEEEEEEcccccEEEEEEEHHHHHHcccccccccccccccccccccccccccccccc
ccccEEEEEEccccccccccccccccHHHcHHccccccccccccccEEHHcccccccEEEEEcEEEcccEEEEEEEccccccccccccccccHHHcHHHHHHHHHcccccccEEEEHHHHHHHccEEEEEEcccccccccccccEEEEEEccccccccccccEEEEEEEcccccccccEEEEcccEEEEccccccccEEEEEEEccccHHHHccccccEEEEccEEEEEcHHHccccccccccccccccEEEEEEcccEEEEEcEccccccccccEEEEEEcccccccccccEEEEEEcccccEEEEEEEccccccEEEEEEEEEcccccccccccEEEEEccccEEEEccccccccEEEEEEEcccccccccHHHHHHHHHHHHccccccccccccccccccHcHcccccccccc
mdgtrllqlrnpwghfswkgdwsddsnlwtpelratlmprgasdgvFWISFEDVLKHAYSVldvrdmdgtrllqlrnpwghfswkgdwsddsnlwtpelratlmprgasdgvFWISFEDVLkyfdcidickvhcagwneghftgwnevrlsgtlpplcsvrhLSCVLLTVLEPTEAEFTLFQEGqrnwekskrspldLCVVILRNKlsstsvrgfvgCHKMLERDIYLVVCLAFnhwhtgisdtaqypEYLLAIhsskpvlveqiepseyILADTIISLTLakgqrhegrerMTAYYLTTGWAGLVVMVENRYENRwihvrcdcgifwvfcdchqsynvvstrgqlktldcvpplHRQVIIVLTQlegsggfsvshHLTHRLasrgglhdwgpsgvshlppldpgveglhsprlit
mdgtrllqlrnpwghfswkgdwsddSNLWTPELRATLMPRGASDGVFWISFEDVLKHAYSVLDVRDMDGTRLLQLRnpwghfswkgdwsddsNLWTPELRATLMPRGASDGVFWISFEDVLKYFDCIDICKVHCAGWNEGHFTGWNEVRLSGTLPPLCSVRHLSCVLLTVLEPTEAEFTLFqegqrnwekskrsplDLCVVILRnklsstsvrgfVGCHKMLERDIYLVVCLAFNHWHTGISDTAQYPEYLLAIHSSKPVLVEQIEPSEYILADTIISLTlakgqrhegrERMTAYYLTTGWAGLVVMVENRYENRWIHVRCDCGIFWVFCDCHQSYNVVSTRGQLKTLDCVPPLHRQVIIVLTQLEGSGGFSVSHHLTHRLASRGGLHDWGPSGVSHlppldpgveglhsprlit
MDGTRLLQLRNPWGHFSWKGDWSDDSNLWTPELRATLMPRGASDGVFWISFEDVLKHAYSVLDVRDMDGTRLLQLRNPWGHFSWKGDWSDDSNLWTPELRATLMPRGASDGVFWISFEDVLKYFDCIDICKVHCAGWNEGHFTGWNEVRLSGTLPPLCSVRHLSCVLLTVLEPTEAEFTLFQEGQRNWEKSKRSPLDLCVVILRNKLSSTSVRGFVGCHKMLERDIYLVVCLAFNHWHTGISDTAQYPEYLLAIHSSKPVLVEQIEPSEYILADTIISLTLAKGQRHEGRERMTAYYLTTGWAGLVVMVENRYENRWIHVRCDCGIFWVFCDCHQSYNVVSTRGQLKTLDCVPPLHRQVIIVLTQLEGSGGFSVSHHLTHRLASRGGLHDWGPSGVSHLPPLDPGVEGLHSPRLIT
*****LLQLRNPWGHFSWKGDWSDDSNLWTPELRATLMPRGASDGVFWISFEDVLKHAYSVLDVRDMDGTRLLQLRNPWGHFSWKGDWSDDSNLWTPELRATLMPRGASDGVFWISFEDVLKYFDCIDICKVHCAGWNEGHFTGWNEVRLSGTLPPLCSVRHLSCVLLTVLEPTEAEFTLFQEGQRNWEKSKRSPLDLCVVILRNKLSSTSVRGFVGCHKMLERDIYLVVCLAFNHWHTGISDTAQYPEYLLAIHSSKPVLVEQIEPSEYILADTIISLTLAKGQRHEGRERMTAYYLTTGWAGLVVMVENRYENRWIHVRCDCGIFWVFCDCHQSYNVVSTRGQLKTLDCVPPLHRQVIIVLTQLEGSGGFSVSHHLTHRLASRGGLHDW*************************
*DGTRLLQLRNPWGHFSWKGDWSDDSNLWTPELRATLMPRGASDGVFWISFEDVLKHAYSVLDVRDMDGTRLLQLRNPWGHFSWKGDWSDDSNLWTPELRATLMPRGASDGVFWISFEDVLKYFDCIDICKVHCAGWNEGHFTGWNEVRLSGTLPPLCSVRHLSCVLLTVLEPTEAEFTLFQEGQRNWEKSKRSPLDLCVVILRNKLS*****GFVGCHKMLERDIYLVVCLAFNHWHTGISDTAQYPEYLLAIHSSKPVLVEQIEPSEYILADTIISLTLA*G****GRERMTAYYLTTGWAGLVVMVENRYENRWIHVRCDCGIFWVFCDCHQSYNVVSTRGQLKTLDCVPPLHRQVIIVLTQLEGSGGFSVSHHLTHRLASRGGLHDWG*****************HSPR***
MDGTRLLQLRNPWGHFSWKGDWSDDSNLWTPELRATLMPRGASDGVFWISFEDVLKHAYSVLDVRDMDGTRLLQLRNPWGHFSWKGDWSDDSNLWTPELRATLMPRGASDGVFWISFEDVLKYFDCIDICKVHCAGWNEGHFTGWNEVRLSGTLPPLCSVRHLSCVLLTVLEPTEAEFTLFQEGQRNWEKSKRSPLDLCVVILRNKLSSTSVRGFVGCHKMLERDIYLVVCLAFNHWHTGISDTAQYPEYLLAIHSSKPVLVEQIEPSEYILADTIISLTLAKGQRHEGRERMTAYYLTTGWAGLVVMVENRYENRWIHVRCDCGIFWVFCDCHQSYNVVSTRGQLKTLDCVPPLHRQVIIVLTQLEGSGGFSVSHHLTHRLASRGGLHDWGPSGVSHLPPLDPGVEGLHSPRLIT
*DGTRLLQLRNPWGHFSWKGDWSDDSNLWTPELRATLMPRGASDGVFWISFEDVLKHAYSVLDVRDMDGTRLLQLRNPWGHFSWKGDWSDDSNLWTPELRATLMPRGASDGVFWISFEDVLKYFDCIDICKVHCAGWNEGHFTGWNEVRLSGTLPPLCSVRHLSCVLLTVLEPTEAEFTLFQEGQRNWEKSKRSPLDLCVVILRNKLSSTSVRGFVGCHKMLERDIYLVVCLAFNHWHTGISDTAQYPEYLLAIHSSKPVLVEQIEPSEYILADTIISLTLAKGQRHEGRERMTAYYLTTGWAGLVVMVENRYENRWIHVRCDCGIFWVFCDCHQSYNVVSTRGQLKTLDCVPPLHRQVIIVLTQLEGSGGFSVSHHLTHRLASRGGLHDWGPSGVSHLPPLDPGVEGLHSP****
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MDGTRLLQLRNPWGHFSWKGDWSDDSNLWTPELRATLMPRGASDGVFWISFEDVLKHAYSVLDVRDMDGTRLLQLRNPWGHFSWKGDWSDDSNLWTPELRATLMPRGASDGVFWISFEDVLKYFDCIDICKVHCAGWNEGHFTGWNEVRLSGTLPPLCSVRHLSCVLLTVLEPTEAEFTLFQEGQRNWEKSKRSPLDLCVVILRNKLSSTSVRGFVGCHKMLERDIYLVVCLAFNHWHTGISDTAQYPEYLLAIHSSKPVLVEQIEPSEYILADTIISLTLAKGQRHEGRERMTAYYLTTGWAGLVVMVENRYENRWIHVRCDCGIFWVFCDCHQSYNVVSTRGQLKTLDCVPPLHRQVIIVLTQLEGSGGFSVSHHLTHRLASRGGLHDWGPSGVSHLPPLDPGVEGLHSPRLIT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query416 2.2.26 [Sep-21-2011]
P273981594 Calpain-D OS=Drosophila m yes N/A 0.814 0.212 0.715 1e-153
O758081086 Calpain-15 OS=Homo sapien yes N/A 0.819 0.313 0.466 5e-94
Q9JLG81095 Calpain-15 OS=Mus musculu yes N/A 0.814 0.309 0.472 7e-94
Q9Y6W3813 Calpain-7 OS=Homo sapiens no N/A 0.199 0.102 0.452 4e-15
A0FKG7813 Calpain-7 OS=Sus scrofa G no N/A 0.194 0.099 0.430 5e-15
Q9R1S8813 Calpain-7 OS=Mus musculus no N/A 0.199 0.102 0.431 2e-14
Q91VA3703 Calpain-8 OS=Mus musculus no N/A 0.235 0.139 0.386 5e-12
Q27971700 Calpain-2 catalytic subun no N/A 0.25 0.148 0.327 9e-12
P97571713 Calpain-1 catalytic subun no N/A 0.25 0.145 0.362 2e-11
Q07009700 Calpain-2 catalytic subun no N/A 0.25 0.148 0.309 2e-11
>sp|P27398|CAND_DROME Calpain-D OS=Drosophila melanogaster GN=sol PE=1 SV=2 Back     alignment and function desciption
 Score =  540 bits (1392), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 267/373 (71%), Positives = 299/373 (80%), Gaps = 34/373 (9%)

Query: 56   KHAYSVLDVRDMDGTRLLQLRNPWGHFSWKGDWSDDSNLWTPELRATLMPRGASDGVFWI 115
            +HAYSVLDV+D+ G RLL+LRNPWGH+SW+GDWSDDS+LWT +LR  LMP GAS+GVFWI
Sbjct: 1244 RHAYSVLDVKDIQGHRLLKLRNPWGHYSWRGDWSDDSSLWTDDLRDALMPHGASEGVFWI 1303

Query: 116  SFEDVLKYFDCIDICKVHCAGWNEGHFTGWNEVRLSGTLPPLCSVRHLSCVLLTVLEPTE 175
            SFEDVL YFDCIDICKV          +GWNEVRL GTL PLCS+   SCVLLTVLEPTE
Sbjct: 1304 SFEDVLNYFDCIDICKVR---------SGWNEVRLQGTLQPLCSI---SCVLLTVLEPTE 1351

Query: 176  AEFTLFQEGQRNWEKSKRSPLDLCVVILRNKL------------SSTSVRGFVGCHKMLE 223
            AEFTLFQEGQRN EKS+RS LDLCVVI R +             S   VRGFVGCHKMLE
Sbjct: 1352 AEFTLFQEGQRNSEKSQRSQLDLCVVIFRTRSPAAPEIGRLVEHSKRQVRGFVGCHKMLE 1411

Query: 224  RDIYLVVCLAFNHWHTGISDTAQYPEYLLAIHSSKPVLVEQIEPSEYILADTIISLTLAK 283
            RDIYL+VCLAFNHWHTGI D  QYP+ +LAIHSSK +LVEQI PS ++LAD IISLTL K
Sbjct: 1412 RDIYLLVCLAFNHWHTGIEDPHQYPQCILAIHSSKRLLVEQISPSPHLLADAIISLTLTK 1471

Query: 284  GQRHEGRERMTAYYLTTGWAGLVVMVENRYENRWIHVRCDCGIFWVFCDCHQSYNVVSTR 343
            GQRHEGRE MTAYYLT GWAGLVVMVENR+EN+WIHV+         CDC +SYNVVSTR
Sbjct: 1472 GQRHEGREGMTAYYLTKGWAGLVVMVENRHENKWIHVK---------CDCQESYNVVSTR 1522

Query: 344  GQLKTLDCVPPLHRQVIIVLTQLEGSGGFSVSHHLTHRLASRGGLHDWGPSGVSHLPPLD 403
            G+LKT+D VPPL RQVIIVLTQLEGSGGFS++H LTHRLA+  GLHDWGP G +H PP++
Sbjct: 1523 GELKTVDSVPPLQRQVIIVLTQLEGSGGFSIAHRLTHRLANSRGLHDWGPPGATHCPPIE 1582

Query: 404  PGVEGLHSPRLIT 416
              V GLH+PRLIT
Sbjct: 1583 -NVHGLHAPRLIT 1594
Calcium-regulated non-lysosomal thiol-protease.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: -
>sp|O75808|CAN15_HUMAN Calpain-15 OS=Homo sapiens GN=SOLH PE=2 SV=1 Back     alignment and function description
>sp|Q9JLG8|CAN15_MOUSE Calpain-15 OS=Mus musculus GN=Solh PE=1 SV=1 Back     alignment and function description
>sp|Q9Y6W3|CAN7_HUMAN Calpain-7 OS=Homo sapiens GN=CAPN7 PE=1 SV=1 Back     alignment and function description
>sp|A0FKG7|CAN7_PIG Calpain-7 OS=Sus scrofa GN=CAPN7 PE=2 SV=1 Back     alignment and function description
>sp|Q9R1S8|CAN7_MOUSE Calpain-7 OS=Mus musculus GN=Capn7 PE=2 SV=1 Back     alignment and function description
>sp|Q91VA3|CAN8_MOUSE Calpain-8 OS=Mus musculus GN=Capn8 PE=1 SV=1 Back     alignment and function description
>sp|Q27971|CAN2_BOVIN Calpain-2 catalytic subunit OS=Bos taurus GN=CAPN2 PE=2 SV=2 Back     alignment and function description
>sp|P97571|CAN1_RAT Calpain-1 catalytic subunit OS=Rattus norvegicus GN=Capn1 PE=1 SV=1 Back     alignment and function description
>sp|Q07009|CAN2_RAT Calpain-2 catalytic subunit OS=Rattus norvegicus GN=Capn2 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query416
307197682 1381 Calpain-D [Harpegnathos saltator] 0.824 0.248 0.726 1e-156
332017348 1370 Calpain-D [Acromyrmex echinatior] 0.824 0.250 0.726 1e-156
350420844 1350 PREDICTED: calpain-D-like [Bombus impati 0.824 0.254 0.726 1e-156
340724076 1350 PREDICTED: LOW QUALITY PROTEIN: calpain- 0.824 0.254 0.726 1e-156
383863286 1349 PREDICTED: calpain-D-like [Megachile rot 0.824 0.254 0.723 1e-156
380011082 1343 PREDICTED: calpain-D-like [Apis florea] 0.824 0.255 0.723 1e-156
345480933 1174 PREDICTED: calpain-D-like [Nasonia vitri 0.824 0.292 0.723 1e-155
307186108 1386 Calpain-D [Camponotus floridanus] 0.824 0.247 0.723 1e-155
66547724 1343 PREDICTED: calpain-D [Apis mellifera] 0.824 0.255 0.718 1e-154
45549036 1594 small optic lobes, isoform B [Drosophila 0.814 0.212 0.715 1e-151
>gi|307197682|gb|EFN78849.1| Calpain-D [Harpegnathos saltator] Back     alignment and taxonomy information
 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 271/373 (72%), Positives = 300/373 (80%), Gaps = 30/373 (8%)

Query: 56   KHAYSVLDVRDMDGTRLLQLRNPWGHFSWKGDWSDDSNLWTPELRATLMPRGASDGVFWI 115
            +HAYSVLDVRD+ G RLL+LRNPWGH+SWKGDWSDDS +WTP+LR  LMP GASDGVFWI
Sbjct: 1027 RHAYSVLDVRDVQGIRLLRLRNPWGHYSWKGDWSDDSPIWTPQLREMLMPHGASDGVFWI 1086

Query: 116  SFEDVLKYFDCIDICKVHCAGWNEGHFTGWNEVRLSGTLPPLCSVRHLSCVLLTVLEPTE 175
            SF+DVLKYFDCIDICK            GW+EVRL GTLPPL S+RHLSCVLLTVLEPTE
Sbjct: 1087 SFDDVLKYFDCIDICKTR---------VGWSEVRLRGTLPPLSSLRHLSCVLLTVLEPTE 1137

Query: 176  AEFTLFQEGQRNWEKSKRSPLDLCVVILRNKL------------SSTSVRGFVGCHKMLE 223
             EFTLFQEGQRN EKS+RS LDLCVV+ R +             S   VRGFVGCHKMLE
Sbjct: 1138 TEFTLFQEGQRNSEKSQRSQLDLCVVVFRTRSPAAPEVGRLVEHSKRQVRGFVGCHKMLE 1197

Query: 224  RDIYLVVCLAFNHWHTGISDTAQYPEYLLAIHSSKPVLVEQIEPSEYILADTIISLTLAK 283
            RD+Y+VVCLAFNHWHTG+ DT+ YPEY+LAIHSSK +LVEQI P  ++LAD IISLTLAK
Sbjct: 1198 RDLYIVVCLAFNHWHTGMEDTSSYPEYVLAIHSSKRLLVEQISPPAFVLADAIISLTLAK 1257

Query: 284  GQRHEGRERMTAYYLTTGWAGLVVMVENRYENRWIHVRCDCGIFWVFCDCHQSYNVVSTR 343
            GQRHEGRE MTAYYLT GWAGLVVMVENR+ N+WIHV+         CDCH+SYNVVSTR
Sbjct: 1258 GQRHEGREGMTAYYLTKGWAGLVVMVENRHVNKWIHVK---------CDCHESYNVVSTR 1308

Query: 344  GQLKTLDCVPPLHRQVIIVLTQLEGSGGFSVSHHLTHRLASRGGLHDWGPSGVSHLPPLD 403
            GQL+T D VPPLHRQVIIVLTQLEGSGGFS++H LTHRLA+ G LHDWGP    H P +D
Sbjct: 1309 GQLRTADSVPPLHRQVIIVLTQLEGSGGFSIAHRLTHRLANSGNLHDWGPPDTQHCPQID 1368

Query: 404  PGVEGLHSPRLIT 416
              VEGLHSPRLIT
Sbjct: 1369 TQVEGLHSPRLIT 1381

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|332017348|gb|EGI58092.1| Calpain-D [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|350420844|ref|XP_003492644.1| PREDICTED: calpain-D-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340724076|ref|XP_003400411.1| PREDICTED: LOW QUALITY PROTEIN: calpain-D-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|383863286|ref|XP_003707112.1| PREDICTED: calpain-D-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|380011082|ref|XP_003689642.1| PREDICTED: calpain-D-like [Apis florea] Back     alignment and taxonomy information
>gi|345480933|ref|XP_001606848.2| PREDICTED: calpain-D-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|307186108|gb|EFN71833.1| Calpain-D [Camponotus floridanus] Back     alignment and taxonomy information
>gi|66547724|ref|XP_624008.1| PREDICTED: calpain-D [Apis mellifera] Back     alignment and taxonomy information
>gi|45549036|ref|NP_476738.3| small optic lobes, isoform B [Drosophila melanogaster] gi|55584090|sp|P27398.2|CAND_DROME RecName: Full=Calpain-D; AltName: Full=Calcium-activated neutral proteinase D; Short=CANP D; AltName: Full=Small optic lobes protein gi|45447065|gb|AAF50826.4| small optic lobes, isoform B [Drosophila melanogaster] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query416
FB|FBgn00034641594 sol "small optic lobes" [Droso 0.814 0.212 0.715 3.4e-141
UNIPROTKB|G3N349994 SOLH "Uncharacterized protein" 0.473 0.198 0.502 9.2e-94
UNIPROTKB|E1B6Y01071 SOLH "Uncharacterized protein" 0.473 0.183 0.502 1.5e-93
UNIPROTKB|E1BTA8574 SOLH "Uncharacterized protein" 0.723 0.524 0.492 3.8e-78
UNIPROTKB|F1RGT71057 SOLH "Uncharacterized protein" 0.822 0.323 0.424 9.3e-66
UNIPROTKB|F1RGT81064 SOLH "Uncharacterized protein" 0.822 0.321 0.424 9.8e-66
UNIPROTKB|O758081086 SOLH "Calpain-15" [Homo sapien 0.826 0.316 0.417 2.4e-65
MGI|MGI:13550751095 Solh "small optic lobes homolo 0.822 0.312 0.416 5.3e-65
UNIPROTKB|J9NVT71072 SOLH "Uncharacterized protein" 0.824 0.319 0.412 1.6e-63
UNIPROTKB|E2R1S31085 SOLH "Uncharacterized protein" 0.824 0.316 0.412 1.7e-63
FB|FBgn0003464 sol "small optic lobes" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1381 (491.2 bits), Expect = 3.4e-141, P = 3.4e-141
 Identities = 267/373 (71%), Positives = 299/373 (80%)

Query:    56 KHAYSVLDVRDMDGTRLLQLRNPWGHFSWKGDWSDDSNLWTPELRATLMPRGASDGVFWI 115
             +HAYSVLDV+D+ G RLL+LRNPWGH+SW+GDWSDDS+LWT +LR  LMP GAS+GVFWI
Sbjct:  1244 RHAYSVLDVKDIQGHRLLKLRNPWGHYSWRGDWSDDSSLWTDDLRDALMPHGASEGVFWI 1303

Query:   116 SFEDVLKYFDCIDICKVHCAGWNEGHFTGWNEVRLSGTLPPLCSVRHLSCVLLTVLEPTE 175
             SFEDVL YFDCIDICKV          +GWNEVRL GTL PLCS+   SCVLLTVLEPTE
Sbjct:  1304 SFEDVLNYFDCIDICKVR---------SGWNEVRLQGTLQPLCSI---SCVLLTVLEPTE 1351

Query:   176 AEFTLFQEGQRNWEKSKRSPLDLCVVILRNKL------------SSTSVRGFVGCHKMLE 223
             AEFTLFQEGQRN EKS+RS LDLCVVI R +             S   VRGFVGCHKMLE
Sbjct:  1352 AEFTLFQEGQRNSEKSQRSQLDLCVVIFRTRSPAAPEIGRLVEHSKRQVRGFVGCHKMLE 1411

Query:   224 RDIYLVVCLAFNHWHTGISDTAQYPEYLLAIHSSKPVLVEQIEPSEYILADTIISLTLAK 283
             RDIYL+VCLAFNHWHTGI D  QYP+ +LAIHSSK +LVEQI PS ++LAD IISLTL K
Sbjct:  1412 RDIYLLVCLAFNHWHTGIEDPHQYPQCILAIHSSKRLLVEQISPSPHLLADAIISLTLTK 1471

Query:   284 GQRHEGRERMTAYYLTTGWAGLVVMVENRYENRWIHVRCDCGIFWVFCDCHQSYNVVSTR 343
             GQRHEGRE MTAYYLT GWAGLVVMVENR+EN+WIHV+CDC          +SYNVVSTR
Sbjct:  1472 GQRHEGREGMTAYYLTKGWAGLVVMVENRHENKWIHVKCDC---------QESYNVVSTR 1522

Query:   344 GQLKTLDCVPPLHRQVIIVLTQLEGSGGFSVSHHLTHRLASRGGLHDWGPSGVSHLPPLD 403
             G+LKT+D VPPL RQVIIVLTQLEGSGGFS++H LTHRLA+  GLHDWGP G +H PP++
Sbjct:  1523 GELKTVDSVPPLQRQVIIVLTQLEGSGGFSIAHRLTHRLANSRGLHDWGPPGATHCPPIE 1582

Query:   404 PGVEGLHSPRLIT 416
               V GLH+PRLIT
Sbjct:  1583 -NVHGLHAPRLIT 1594
GO:0007399 "nervous system development" evidence=IMP
GO:0007632 "visual behavior" evidence=NAS
GO:0004198 "calcium-dependent cysteine-type endopeptidase activity" evidence=ISS
GO:0005622 "intracellular" evidence=IEA
GO:0006508 "proteolysis" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=NAS
UNIPROTKB|G3N349 SOLH "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E1B6Y0 SOLH "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E1BTA8 SOLH "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1RGT7 SOLH "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1RGT8 SOLH "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|O75808 SOLH "Calpain-15" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1355075 Solh "small optic lobes homolog (Drosophila)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|J9NVT7 SOLH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2R1S3 SOLH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P27398CAND_DROME3, ., 4, ., 2, 2, ., -0.71580.81490.2126yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.22LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query416
pfam00648302 pfam00648, Peptidase_C2, Calpain family cysteine p 9e-30
smart00230318 smart00230, CysPc, Calpain-like thiol protease fam 2e-29
cd00044315 cd00044, CysPc, Calpains, domains IIa, IIb; calciu 3e-26
pfam00648302 pfam00648, Peptidase_C2, Calpain family cysteine p 6e-20
smart00230318 smart00230, CysPc, Calpain-like thiol protease fam 2e-17
cd00044315 cd00044, CysPc, Calpains, domains IIa, IIb; calciu 4e-16
>gnl|CDD|216041 pfam00648, Peptidase_C2, Calpain family cysteine protease Back     alignment and domain information 
 Score =  116 bits (293), Expect = 9e-30
 Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 7/83 (8%)

Query: 57  HAYSVLDVRDMDGT----RLLQLRNPWGHFSWKGDWSDDSNLWT---PELRATLMPRGAS 109
           HAYSV  V++++      +L++LRNPWG   W G WSD S  W    P+ RA L  +   
Sbjct: 220 HAYSVTGVKEVNYRGEKQKLIRLRNPWGQVEWTGAWSDGSPEWRFIDPDERARLQLQFEE 279

Query: 110 DGVFWISFEDVLKYFDCIDICKV 132
           DG FW+SFED L++F  ++IC +
Sbjct: 280 DGEFWMSFEDFLRHFSRLEICNL 302

Length = 302
>gnl|CDD|128526 smart00230, CysPc, Calpain-like thiol protease family Back     alignment and domain information
>gnl|CDD|238004 cd00044, CysPc, Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like Back     alignment and domain information
>gnl|CDD|216041 pfam00648, Peptidase_C2, Calpain family cysteine protease Back     alignment and domain information
>gnl|CDD|128526 smart00230, CysPc, Calpain-like thiol protease family Back     alignment and domain information
>gnl|CDD|238004 cd00044, CysPc, Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 416
KOG0045|consensus612 99.97
smart00230318 CysPc Calpain-like thiol protease family. Calpain- 99.77
PF00648298 Peptidase_C2: Calpain family cysteine protease Thi 99.72
cd00214150 Calpain_III Calpain, subdomain III. Calpains are c 99.69
cd00044315 CysPc Calpains, domains IIa, IIb; calcium-dependen 99.64
smart00720143 calpain_III calpain_III. 99.63
smart00230318 CysPc Calpain-like thiol protease family. Calpain- 99.56
PF01067147 Calpain_III: Calpain large subunit, domain III; In 99.52
PF00648298 Peptidase_C2: Calpain family cysteine protease Thi 99.52
cd00044315 CysPc Calpains, domains IIa, IIb; calcium-dependen 99.43
KOG0045|consensus612 99.38
>KOG0045|consensus Back     alignment and domain information 
Probab=99.97  E-value=5e-31  Score=278.05  Aligned_cols=334  Identities=21%  Similarity=0.268  Sum_probs=236.8

Q ss_pred             eeeeeeeeeeceeeeeeeecCc----eeeecccCCCCcceecCcCCCCCCCCCH---HHHHhhCCCCCCCCceeeehhhh
Q psy294           48 WISFEDVLKHAYSVLDVRDMDG----TRLLQLRNPWGHFSWKGDWSDDSNLWTP---ELRATLMPRGASDGVFWISFEDV  120 (416)
Q Consensus        48 Wms~~df~~haYsvl~v~~~~~----~~Ll~lrnpWg~~~w~G~Ws~~s~~W~~---~~~~~l~~~~~~dG~FWMs~~Df  120 (416)
                      -+..++..+|||++++++.+.+    ++|+++|||||..+|+|.|++++++|..   ..+..+..+..+||+|||+++||
T Consensus       239 ~~~~gL~~~HaYsit~~~~~~~~~~~~~lirlrNPwg~~~W~G~wsd~~~~W~~v~~~~~~~~~~~~~~dGeFWms~~dF  318 (612)
T KOG0045|consen  239 KLRNGLVKGHAYAITDVREVQGRGGKHRLIRLRNPWGESEWNGPWSDGSEEWHLVDKSKLSELGRQPLDDGEFWMSFDDF  318 (612)
T ss_pred             HhhcCccccccEEEEEEEEeecccccceeEEecCCcCCceeccccccCCcchhhhCHHHHhhcccccccCCCeeeeHHHH
Confidence            4566889999999999999999    9999999999999999999999999984   44444444457899999999999


Q ss_pred             hcccceEEEEeeecCCCCCCCcceeeeEeeeccC--CCCC----------CCCcceeEEEEEecCCc----eeEeeeecc
Q psy294          121 LKYFDCIDICKVHCAGWNEGHFTGWNEVRLSGTL--PPLC----------SVRHLSCVLLTVLEPTE----AEFTLFQEG  184 (416)
Q Consensus       121 ~~~F~~l~ic~~~p~~~~~~~~~~W~e~~~~g~~--~~~~----------~~~~~~~~~l~v~ep~e----~~~~L~Q~~  184 (416)
                      +++|+.++||+++++.........|......|.|  ..+.          +...|+++.+.+.++++    +.+.|+|++
T Consensus       319 ~~~F~~~~vC~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~t~ggc~~~~~tF~~npq~~~~~~~~~~~~~~~v~~~~q~~  398 (612)
T KOG0045|consen  319 LREFDSLTVCRLRPDWLESRNQLQWVKLSLDGEWELARGVTAGGCRNSVDTFDRNPQYILAVRKPTKSLCAVVLALFQKT  398 (612)
T ss_pred             HhhCCeEeecCCCcchhhhhheeeeeeeecCCccceeecccCCCCccCcccccCCceEEEEecCCCccceEEEEEeeccc
Confidence            9999999999999876544443478888888888  3222          23468999999998874    456789999


Q ss_pred             cccccccCCCCCceEEEEEecCCC-CCc--------------cccEEeeeEeecCCcEEEEEeeecccccCcCCCCCCCC
Q psy294          185 QRNWEKSKRSPLDLCVVILRNKLS-STS--------------VRGFVGCHKMLERDIYLVVCLAFNHWHTGISDTAQYPE  249 (416)
Q Consensus       185 ~r~~~~~~~~~~~ig~~v~r~~~~-~~~--------------v~~~v~~~~~LepG~YvVVp~tf~~~~~~~~~p~~~~~  249 (416)
                      .+....-+.+..+||+.+|++... +.+              ..+.|..++.++||.|+++|+||+        |+++++
T Consensus       399 ~~~~~~~~~~~~~ig~~i~~v~~~~~~~~~~~~~~~~~~~~i~~r~v~~~~~~P~~~y~~~pst~~--------~~~~~~  470 (612)
T KOG0045|consen  399 RRGERSFGANILDIGFHIYEVPLEGKYFVLDNAPIASSSSFINNREVSVRFRLPPGTYVIVPSTFE--------PGEEGE  470 (612)
T ss_pred             ccccccccceeeecceEEEEecCCCCceEecccchhcccccccceeEEEEecCCCcceeecccCCC--------CCCCcc
Confidence            887655455778999999998733 111              236788899999999999999998        788999


Q ss_pred             eEEEEEeCCCceeEEeCCchhHHHHHHHHHhHhcceeeecccCeEEEEEecCeeEEEEEEEcCCCCceEEEEeecCceee
Q psy294          250 YLLAIHSSKPVLVEQIEPSEYILADTIISLTLAKGQRHEGRERMTAYYLTTGWAGLVVMVENRYENRWIHVRCDCGIFWV  329 (416)
Q Consensus       250 f~LrI~S~~~v~~~~v~~~~~~l~~sl~~~~~~~G~~~e~r~g~~~~y~~~~~~~~~vm~eN~~~~~~~~v~~~~~~~~~  329 (416)
                      |+|||||...+..+.        ...|.....+....+..++|.+..+..+.+..+.++++.+....+.++.+       
T Consensus       471 f~lrvfs~~~~~~~~--------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~s~~~~~~~~-------  535 (612)
T KOG0045|consen  471 FLLRVFSNVKVKSEE--------DMEISLDETKRSTNIIVMKGFSLGECGDKWKLSSTLVNTKVSRSSEFILT-------  535 (612)
T ss_pred             EEEEEeecccccCcc--------ceEEeecccccceeeeeecceehhhhchhhhccccccccccchhhceeee-------
Confidence            999999999888775        00111111122222223345555444455555555555555555544444       


Q ss_pred             eeccCceeeeEeccCceeeeeecCCCCceEEEEEEeEeCCCceEEEEeeeeeeeccCCccCCCCCCCccCCCCCCCCcCC
Q psy294          330 FCDCHQSYNVVSTRGQLKTLDCVPPLHRQVIIVLTQLEGSGGFSVSHHLTHRLASRGGLHDWGPSGVSHLPPLDPGVEGL  409 (416)
Q Consensus       330 ~~d~~~~~nv~s~rg~l~~~d~vPp~~rqv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~p~~~~~~~~~  409 (416)
                        .+-... +     .+....++.. .+++.+..............+++.+.........++.....+|.|.+......+
T Consensus       536 --~~~~~~-~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  606 (612)
T KOG0045|consen  536 --VEVVSP-L-----DIEGESTLVV-DIPIAIESKGSGDVAPLLNVIRLRIADPEIAYSFDSTSCCATEGPLVLDELFDL  606 (612)
T ss_pred             --eccccc-E-----EEeccccccc-cccceeeccCCcccccceeeeeeeccChhheeeccccccccccCcchhhhhhcC
Confidence              111111 1     2223334444 666666666666666666666666766666667888999999999987766666


Q ss_pred             CCCc
Q psy294          410 HSPR  413 (416)
Q Consensus       410 ~~~~  413 (416)
                      +.+.
T Consensus       607 ~~~~  610 (612)
T KOG0045|consen  607 SSKK  610 (612)
T ss_pred             CCCC
Confidence            6553

>smart00230 CysPc Calpain-like thiol protease family Back     alignment and domain information
>PF00648 Peptidase_C2: Calpain family cysteine protease This is family C2 in the peptidase classification Back     alignment and domain information
>cd00214 Calpain_III Calpain, subdomain III Back     alignment and domain information
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like Back     alignment and domain information
>smart00720 calpain_III calpain_III Back     alignment and domain information
>smart00230 CysPc Calpain-like thiol protease family Back     alignment and domain information
>PF01067 Calpain_III: Calpain large subunit, domain III; InterPro: IPR022682 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF00648 Peptidase_C2: Calpain family cysteine protease This is family C2 in the peptidase classification Back     alignment and domain information
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like Back     alignment and domain information
>KOG0045|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query416
1qxp_A 900 Crystal Structure Of A Mu-Like Calpain Length = 900 1e-12
3df0_A714 Calcium-Dependent Complex Between M-Calpain And Cal 1e-12
1u5i_A700 Crystal Structure Analysis Of Rat M-Calpain Mutant 1e-12
1df0_A700 Crystal Structure Of M-Calpain Length = 700 1e-12
1mdw_A328 Crystal Structure Of Calcium-bound Protease Core Of 2e-12
1kfx_L699 Crystal Structure Of Human M-Calpain Form I Length 1e-11
1kxr_A339 Crystal Structure Of Calcium-Bound Protease Core Of 2e-11
1tl9_A339 High Resolution Crystal Structure Of Calpain I Prot 2e-11
2p0r_A333 Structure Of Human Calpain 9 In Complex With Leupep 2e-10
1ziv_A339 Catalytic Domain Of Human Calpain-9 Length = 339 2e-10
2nqa_A326 Catalytic Domain Of Human Calpain 8 Length = 326 3e-10
2ary_A351 Catalytic Domain Of Human Calpain-1 Length = 351 7e-10
1zcm_A321 Human Calpain Protease Core Inhibited By Zllych2f L 8e-10
>pdb|1QXP|A Chain A, Crystal Structure Of A Mu-Like Calpain Length = 900 Back     alignment and structure 
Iteration: 1

 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 60/113 (53%), Gaps = 9/113 (7%)
Query: 49  ISFEDVLK-HAYSVLDVRDM--DGTR--LLQLRNPWGHFSWKGDWSDDSNLWT---PELR 100
           I+F+++++ HAYSV D + +   G R  L+++RNPWG   WKG WSD+S  W    P  R
Sbjct: 253 ITFKNLVRGHAYSVTDAKQVTYQGQRVNLIRMRNPWGEVEWKGPWSDNSYEWNKVDPYER 312
Query: 101 ATLMPRGASDGVFWISFEDVLKYFDCIDICKVHCAGWNEGHFTGWNEVRLSGT 153
             L  +   DG FW+SF D ++ F  ++IC +            WN     GT
Sbjct: 313 EQLRVK-MEDGEFWMSFRDFIREFTKLEICNLTPDALKSRTLRNWNTTFYEGT 364
>pdb|3DF0|A Chain A, Calcium-Dependent Complex Between M-Calpain And Calpastatin Length = 714 Back     alignment and structure
>pdb|1U5I|A Chain A, Crystal Structure Analysis Of Rat M-Calpain Mutant Lys10 Thr Length = 700 Back     alignment and structure
>pdb|1DF0|A Chain A, Crystal Structure Of M-Calpain Length = 700 Back     alignment and structure
>pdb|1MDW|A Chain A, Crystal Structure Of Calcium-bound Protease Core Of Calpain Ii Reveals The Basis For Intrinsic Inactivation Length = 328 Back     alignment and structure
>pdb|1KFX|L Chain L, Crystal Structure Of Human M-Calpain Form I Length = 699 Back     alignment and structure
>pdb|1KXR|A Chain A, Crystal Structure Of Calcium-Bound Protease Core Of Calpain I Length = 339 Back     alignment and structure
>pdb|1TL9|A Chain A, High Resolution Crystal Structure Of Calpain I Protease Core In Complex With Leupeptin Length = 339 Back     alignment and structure
>pdb|2P0R|A Chain A, Structure Of Human Calpain 9 In Complex With Leupeptin Length = 333 Back     alignment and structure
>pdb|1ZIV|A Chain A, Catalytic Domain Of Human Calpain-9 Length = 339 Back     alignment and structure
>pdb|2NQA|A Chain A, Catalytic Domain Of Human Calpain 8 Length = 326 Back     alignment and structure
>pdb|2ARY|A Chain A, Catalytic Domain Of Human Calpain-1 Length = 351 Back     alignment and structure
>pdb|1ZCM|A Chain A, Human Calpain Protease Core Inhibited By Zllych2f Length = 321 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query416
2nqa_A326 Calpain 8; calpain, calcium-dependent cytoplasmic 1e-27
2nqa_A326 Calpain 8; calpain, calcium-dependent cytoplasmic 2e-17
1ziv_A339 Calpain 9; cysteine protease, papain, calcium-depe 1e-22
1ziv_A339 Calpain 9; cysteine protease, papain, calcium-depe 8e-13
1qxp_A 900 MU-like calpain; M-calpain, MU-calpain, catalytic 9e-22
1qxp_A 900 MU-like calpain; M-calpain, MU-calpain, catalytic 6e-13
2r9f_A339 Calpain-1 catalytic subunit; protease, peptidase, 1e-19
2r9f_A339 Calpain-1 catalytic subunit; protease, peptidase, 1e-10
3bow_A714 Calpain-2 catalytic subunit; cysteine protease, in 4e-19
3bow_A714 Calpain-2 catalytic subunit; cysteine protease, in 3e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>2nqa_A Calpain 8; calpain, calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC; HET: AR7; 2.20A {Homo sapiens} Length = 326 Back     alignment and structure
 Score =  110 bits (277), Expect = 1e-27
 Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 15/127 (11%)

Query: 22  WSDDSNLWTPELRA---------TLMPRGASDGVFWISFEDVLKHAYSVLDVRDMD---- 68
               +NL+    +A         ++    A++     S + V  HAYSV  V +++    
Sbjct: 198 KKPPANLYQIIRKALCAGSLLGCSIDVYSAAEAEAITSQKLVKSHAYSVTGVEEVNFQGH 257

Query: 69  GTRLLQLRNPWGHFSWKGDWSDDSNLWT--PELRATLMPRGASDGVFWISFEDVLKYFDC 126
             +L++LRNPWG   W G WSDD+  W      R   + +   DG FW+S  D ++ F  
Sbjct: 258 PEKLIRLRNPWGEVEWSGAWSDDAPEWNHIDPRRKEELDKKVEDGEFWMSLSDFVRQFSR 317

Query: 127 IDICKVH 133
           ++IC + 
Sbjct: 318 LEICNLS 324
>2nqa_A Calpain 8; calpain, calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC; HET: AR7; 2.20A {Homo sapiens} Length = 326 Back     alignment and structure
>1ziv_A Calpain 9; cysteine protease, papain, calcium-dependent, thiol protease, structural genomics consortium, SGC, hydrolase; 2.31A {Homo sapiens} SCOP: d.3.1.3 PDB: 2p0r_A* Length = 339 Back     alignment and structure
>1ziv_A Calpain 9; cysteine protease, papain, calcium-dependent, thiol protease, structural genomics consortium, SGC, hydrolase; 2.31A {Homo sapiens} SCOP: d.3.1.3 PDB: 2p0r_A* Length = 339 Back     alignment and structure
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3 Length = 900 Back     alignment and structure
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3 Length = 900 Back     alignment and structure
>2r9f_A Calpain-1 catalytic subunit; protease, peptidase, inhibitor, alpha-ketoamide, hydrolase, thiol protease; HET: K2Z; 1.60A {Rattus norvegicus} SCOP: d.3.1.3 PDB: 1tlo_A* 2g8e_A* 1tl9_A* 2nqg_A* 2nqi_A* 2r9c_A* 2g8j_A* 1kxr_A 2ary_A 1zcm_A* 1mdw_A Length = 339 Back     alignment and structure
>2r9f_A Calpain-1 catalytic subunit; protease, peptidase, inhibitor, alpha-ketoamide, hydrolase, thiol protease; HET: K2Z; 1.60A {Rattus norvegicus} SCOP: d.3.1.3 PDB: 1tlo_A* 2g8e_A* 1tl9_A* 2nqg_A* 2nqi_A* 2r9c_A* 2g8j_A* 1kxr_A 2ary_A 1zcm_A* 1mdw_A Length = 339 Back     alignment and structure
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L Length = 714 Back     alignment and structure
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L Length = 714 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query416
3bow_A714 Calpain-2 catalytic subunit; cysteine protease, in 100.0
1qxp_A 900 MU-like calpain; M-calpain, MU-calpain, catalytic 100.0
2nqa_A326 Calpain 8; calpain, calcium-dependent cytoplasmic 99.75
1ziv_A339 Calpain 9; cysteine protease, papain, calcium-depe 99.74
2r9f_A339 Calpain-1 catalytic subunit; protease, peptidase, 99.74
1qxp_A 900 MU-like calpain; M-calpain, MU-calpain, catalytic 99.67
2r9f_A339 Calpain-1 catalytic subunit; protease, peptidase, 99.61
2nqa_A326 Calpain 8; calpain, calcium-dependent cytoplasmic 99.6
1ziv_A339 Calpain 9; cysteine protease, papain, calcium-depe 99.58
3bow_A714 Calpain-2 catalytic subunit; cysteine protease, in 99.57
2qfe_A148 Calpain-7; C2-like domain, hydrolase, nuclear prot 99.48
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L Back     alignment and structure
Probab=100.00  E-value=3e-34  Score=311.13  Aligned_cols=214  Identities=23%  Similarity=0.395  Sum_probs=177.5

Q ss_pred             ceeeeeeeeeeeceeeeeeeecC----ceeeecccCCCCcceecCcCCCCCCCCC---HHHHHhhCCCCCCCCceeeehh
Q psy294           46 VFWISFEDVLKHAYSVLDVRDMD----GTRLLQLRNPWGHFSWKGDWSDDSNLWT---PELRATLMPRGASDGVFWISFE  118 (416)
Q Consensus        46 ~FWms~~df~~haYsvl~v~~~~----~~~Ll~lrnpWg~~~w~G~Ws~~s~~W~---~~~~~~l~~~~~~dG~FWMs~~  118 (416)
                      +--...+++.+|||+|+++.++.    +.+|++||||||..+|+|+|++++++|+   |+.+.+|.... +||+|||+|+
T Consensus       251 ~~~~~~GL~~~HaYsvl~~~~v~~~~~~~~lv~lrNPWg~~ew~G~wsd~s~~W~~~~~~~~~~l~~~~-~dg~FWm~~~  329 (714)
T 3bow_A          251 EAVTYQKLVKGHAYSVTGAEEVESSGSLQKLIRIRNPWGQVEWTGKWNDNCPSWNTVDPEVRANLTERQ-EDGEFWMSFS  329 (714)
T ss_dssp             CCBCTTSCBTTSCEEEEEEEEEEETTEEEEEEEEECTTSCCCCCSTTSTTCGGGGGSCHHHHHHHCCCC-CSSEEEEEHH
T ss_pred             cchhcCCCcCCceEEEeeeEEeecCCCceEEEEEECCCCCcccCCCCCCCCccccccCHHHHHHhCCCC-CCCeEEEEhH
Confidence            33455678899999999999874    4799999999999999999999999998   78999997654 8999999999


Q ss_pred             hhhcccceEEEEeeecCCCCCCCcceeeeEeeeccCCCCCCC----------CcceeEEEEEecCC----------ceeE
Q psy294          119 DVLKYFDCIDICKVHCAGWNEGHFTGWNEVRLSGTLPPLCSV----------RHLSCVLLTVLEPT----------EAEF  178 (416)
Q Consensus       119 Df~~~F~~l~ic~~~p~~~~~~~~~~W~e~~~~g~~~~~~~~----------~~~~~~~l~v~ep~----------e~~~  178 (416)
                      ||+++|+.++||++.|+.+.......|+...+.|.|.+|.++          ..||||.|+|.+++          .+.|
T Consensus       330 df~~~F~~~~ic~~~~~~~~~~~~~~w~~~~~~g~W~~g~taGG~~~~~~tf~~NPqf~l~v~~~~~~~~~~~~~~~v~v  409 (714)
T 3bow_A          330 DFLRHYSRLEICNLTPDTLTCDSYKKWKLTKMDGNWRRGSTAGGCRNYPNTFWMNPQYLIKLEEEDEDDEDGERGCTFLV  409 (714)
T ss_dssp             HHHHHCCEEEEEESSSSCTTCSSCCEEEEEEEEEEECTTTTCCCCTTCHHHHTTSCCEEEEECGGGCBCGGGCCBEEEEE
T ss_pred             HHHhhCCeEEEEEecccccccccCcceEEEEEeceeccCCCCCCCCCccccccCCceEEEEEccCCccccccCCccEEEE
Confidence            999999999999999987755444689999999999876543          24899999998763          4788


Q ss_pred             eeeecccccccccCCCCCceEEEEEecCC---C---CC------------------ccccEEeeeEeecCCcEEEEEeee
Q psy294          179 TLFQEGQRNWEKSKRSPLDLCVVILRNKL---S---ST------------------SVRGFVGCHKMLERDIYLVVCLAF  234 (416)
Q Consensus       179 ~L~Q~~~r~~~~~~~~~~~ig~~v~r~~~---~---~~------------------~v~~~v~~~~~LepG~YvVVp~tf  234 (416)
                      +|+|+++|.....+.....|||.||+++.   +   .+                  ...|+|++++.|+||+|+|||+||
T Consensus       410 ~L~Q~~~r~~~~~g~~~~~Igf~v~~~~~~~~~~~~~~l~~~ff~~~~~~~~s~~f~~~Rev~~~~~L~pG~Y~IVPstf  489 (714)
T 3bow_A          410 GLIQKHRRRQRKMGEDMHTIGFGIYEVPEELTGQTNIHLSKNFFLTTRARERSDTFINLREVLNRFKLPPGEYVLVPSTF  489 (714)
T ss_dssp             EEEEESCGGGGGGTCCCCCEEEEEEECCGGGSSCTTCCCCHHHHHHCCCSEECSCEESSSEEEEEEEECSEEEEEEEEES
T ss_pred             EeeeeccccccccCCCcceEEEEEEEecccccCccccccchhhccccCCccccCCcccccceEEEEEeCCCCeEEEEecC
Confidence            99999998766555667899999999742   0   00                  124678999999999999999999


Q ss_pred             cccccCcCCCCCCCCeEEEEEeCCCceeEEeCCc
Q psy294          235 NHWHTGISDTAQYPEYLLAIHSSKPVLVEQIEPS  268 (416)
Q Consensus       235 ~~~~~~~~~p~~~~~f~LrI~S~~~v~~~~v~~~  268 (416)
                      +        |+++++|+|||||.++..+++++..
T Consensus       490 ~--------p~~e~~F~Lrv~s~~~~~~~el~~~  515 (714)
T 3bow_A          490 E--------PHKNGDFCIRVFSEKKADYQTVDDE  515 (714)
T ss_dssp             S--------TTCCEEEEEEEEEEESSCC--CCCS
T ss_pred             C--------CCCccceeEEEeccCCcceeecccc
Confidence            8        6788999999999998876655443
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3 Back     alignment and structure
>2nqa_A Calpain 8; calpain, calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC; HET: AR7; 2.20A {Homo sapiens} Back     alignment and structure
>1ziv_A Calpain 9; cysteine protease, papain, calcium-dependent, thiol protease, structural genomics consortium, SGC, hydrolase; 2.31A {Homo sapiens} SCOP: d.3.1.3 PDB: 2p0r_A* Back     alignment and structure
>2r9f_A Calpain-1 catalytic subunit; protease, peptidase, inhibitor, alpha-ketoamide, hydrolase, thiol protease; HET: K2Z; 1.60A {Rattus norvegicus} SCOP: d.3.1.3 PDB: 1tlo_A* 2g8e_A* 1tl9_A* 2nqg_A* 2nqi_A* 2r9c_A* 2g8j_A* 1kxr_A 2ary_A 1zcm_A* 1mdw_A Back     alignment and structure
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3 Back     alignment and structure
>2r9f_A Calpain-1 catalytic subunit; protease, peptidase, inhibitor, alpha-ketoamide, hydrolase, thiol protease; HET: K2Z; 1.60A {Rattus norvegicus} SCOP: d.3.1.3 PDB: 1tlo_A* 2g8e_A* 1tl9_A* 2nqg_A* 2nqi_A* 2r9c_A* 2g8j_A* 1kxr_A 2ary_A 1zcm_A* 1mdw_A Back     alignment and structure
>2nqa_A Calpain 8; calpain, calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC; HET: AR7; 2.20A {Homo sapiens} Back     alignment and structure
>1ziv_A Calpain 9; cysteine protease, papain, calcium-dependent, thiol protease, structural genomics consortium, SGC, hydrolase; 2.31A {Homo sapiens} SCOP: d.3.1.3 PDB: 2p0r_A* Back     alignment and structure
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L Back     alignment and structure
>2qfe_A Calpain-7; C2-like domain, hydrolase, nuclear protein, protease, thiol protease; 1.45A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 416
d2r9fa1322 d.3.1.3 (A:33-354) Calpain large subunit, catalyti 6e-25
d2r9fa1322 d.3.1.3 (A:33-354) Calpain large subunit, catalyti 3e-16
d1ziva1310 d.3.1.3 (A:28-337) Calpain large subunit, catalyti 8e-25
d1ziva1310 d.3.1.3 (A:28-337) Calpain large subunit, catalyti 1e-15
d1mdwa_323 d.3.1.3 (A:) Calpain large subunit, catalytic doma 5e-24
d1mdwa_323 d.3.1.3 (A:) Calpain large subunit, catalytic doma 4e-16
>d2r9fa1 d.3.1.3 (A:33-354) Calpain large subunit, catalytic domain (domain II) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]} Length = 322 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Calpain large subunit, catalytic domain (domain II)
domain: Calpain large subunit, catalytic domain (domain II)
species: Rat (Rattus norvegicus), mu-type [TaxId: 10116]

 Score =  102 bits (254), Expect = 6e-25
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 6/82 (7%)

Query: 57  HAYSVLDVRDMDG----TRLLQLRNPWGHFSWKGDWSDDSNLWT--PELRATLMPRGASD 110
           HAYSV D + +        L+++RNPWG   WKG WSD+S  W          +     D
Sbjct: 240 HAYSVTDAKQVTYQGQRVNLIRMRNPWGEVEWKGPWSDNSYEWNKVDPYEREQLRVKMED 299

Query: 111 GVFWISFEDVLKYFDCIDICKV 132
           G FW+SF D ++ F  ++IC +
Sbjct: 300 GEFWMSFRDFIREFTKLEICNL 321
>d2r9fa1 d.3.1.3 (A:33-354) Calpain large subunit, catalytic domain (domain II) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]} Length = 322 Back     information, alignment and structure
>d1ziva1 d.3.1.3 (A:28-337) Calpain large subunit, catalytic domain (domain II) {Human (Homo sapiens), calpain 9 [TaxId: 9606]} Length = 310 Back     information, alignment and structure
>d1ziva1 d.3.1.3 (A:28-337) Calpain large subunit, catalytic domain (domain II) {Human (Homo sapiens), calpain 9 [TaxId: 9606]} Length = 310 Back     information, alignment and structure
>d1mdwa_ d.3.1.3 (A:) Calpain large subunit, catalytic domain (domain II) {Rat (Rattus norvegicus), M-type [TaxId: 10116]} Length = 323 Back     information, alignment and structure
>d1mdwa_ d.3.1.3 (A:) Calpain large subunit, catalytic domain (domain II) {Rat (Rattus norvegicus), M-type [TaxId: 10116]} Length = 323 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query416
d1df0a2159 Calpain large subunit, middle domain (domain III) 99.68
d1ziva1310 Calpain large subunit, catalytic domain (domain II 99.65
d1mdwa_323 Calpain large subunit, catalytic domain (domain II 99.65
d2r9fa1322 Calpain large subunit, catalytic domain (domain II 99.64
d1qxpa3159 Calpain large subunit, middle domain (domain III) 99.63
d2r9fa1322 Calpain large subunit, catalytic domain (domain II 99.49
d1ziva1310 Calpain large subunit, catalytic domain (domain II 99.47
d1mdwa_323 Calpain large subunit, catalytic domain (domain II 99.44
>d1df0a2 b.14.1.1 (A:356-514) Calpain large subunit, middle domain (domain III) {Rat (Rattus norvegicus), M-type [TaxId: 10116]} Back     information, alignment and structure
class: All beta proteins
fold: Calpain large subunit, middle domain (domain III)
superfamily: Calpain large subunit, middle domain (domain III)
family: Calpain large subunit, middle domain (domain III)
domain: Calpain large subunit, middle domain (domain III)
species: Rat (Rattus norvegicus), M-type [TaxId: 10116]

Probab=99.68  E-value=1.2e-16  Score=139.56  Aligned_cols=114  Identities=15%  Similarity=0.114  Sum_probs=90.7

Q ss_pred             eeeEeeeccCCCCCCC----------CcceeEEEEEecCCc----------eeEeeeecccccccccCCCCCceEEEEEe
Q psy294          145 WNEVRLSGTLPPLCSV----------RHLSCVLLTVLEPTE----------AEFTLFQEGQRNWEKSKRSPLDLCVVILR  204 (416)
Q Consensus       145 W~e~~~~g~~~~~~~~----------~~~~~~~l~v~ep~e----------~~~~L~Q~~~r~~~~~~~~~~~ig~~v~r  204 (416)
                      |+...+.|.|..|.++          ..||||.|+|.++++          +.|+|.|+++|...+.+.....|||.|++
T Consensus         1 W~~~~~~G~W~~g~tAGG~~~~~~tf~~NPQy~l~v~~~~~~~~~~~~~~~v~v~L~q~~~r~~~~~~~~~~~IGf~v~~   80 (159)
T d1df0a2           1 WKLTKMDGNWRRGSTAGGCRNYPNTFWMNPQYLIKLEEEDEDDEDGERGCTFLVGLIQKHRRRQRKMGEDMHTIGFGIYE   80 (159)
T ss_dssp             CEEEEEEEEECTTTTCCCSTTCHHHHTTSCCEEEEECSCCCCSSSC-CCEEEEEEEEECCCTTCCSTTCSCCCEEEEEEE
T ss_pred             CcEEEEeCEEeCCCCccCCCCCccccccCCEEEEEecCCCcccccCccceEEEEEeeccCchhccccCccccceEEEEEE
Confidence            6777788888665433          248999999988753          67899999998765555567789999999


Q ss_pred             cCCC-----------------------C-CccccEEeeeEeecCCcEEEEEeeecccccCcCCCCCCCCeEEEEEeCCCc
Q psy294          205 NKLS-----------------------S-TSVRGFVGCHKMLERDIYLVVCLAFNHWHTGISDTAQYPEYLLAIHSSKPV  260 (416)
Q Consensus       205 ~~~~-----------------------~-~~v~~~v~~~~~LepG~YvVVp~tf~~~~~~~~~p~~~~~f~LrI~S~~~v  260 (416)
                      +...                       . ....++|+.++.|+||.|+|||+||+        |+++++|+|||||++++
T Consensus        81 ~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~rev~~~~~L~pG~Y~IVPsT~~--------p~~~g~F~Lrvfs~~~~  152 (159)
T d1df0a2          81 VPEELTGQTNIHLSKNFFLTTRARERSDTFINLREVLNRFKLPPGEYVLVPSTFE--------PHKNGDFCIRVFSEKKA  152 (159)
T ss_dssp             C------------CCCCSCC----CCCCCCBCSSEEEEEEEECSEEEEEEEEESS--------SSCCEEEEEEEEESSCE
T ss_pred             eecccCcccccccChhhccccCceeccCCeecccEEEEEEEeCCCCEEEEeEecC--------CCCEeeEEEEEEECCCC
Confidence            7521                       0 11246789999999999999999998        78999999999999999


Q ss_pred             eeEEeC
Q psy294          261 LVEQIE  266 (416)
Q Consensus       261 ~~~~v~  266 (416)
                      .+++++
T Consensus       153 ~~~el~  158 (159)
T d1df0a2         153 DYQTVD  158 (159)
T ss_dssp             EEEECC
T ss_pred             CeEeCC
Confidence            999876
>d1ziva1 d.3.1.3 (A:28-337) Calpain large subunit, catalytic domain (domain II) {Human (Homo sapiens), calpain 9 [TaxId: 9606]} Back     information, alignment and structure
>d1mdwa_ d.3.1.3 (A:) Calpain large subunit, catalytic domain (domain II) {Rat (Rattus norvegicus), M-type [TaxId: 10116]} Back     information, alignment and structure
>d2r9fa1 d.3.1.3 (A:33-354) Calpain large subunit, catalytic domain (domain II) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]} Back     information, alignment and structure
>d1qxpa3 b.14.1.1 (A:356-514) Calpain large subunit, middle domain (domain III) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]} Back     information, alignment and structure
>d2r9fa1 d.3.1.3 (A:33-354) Calpain large subunit, catalytic domain (domain II) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]} Back     information, alignment and structure
>d1ziva1 d.3.1.3 (A:28-337) Calpain large subunit, catalytic domain (domain II) {Human (Homo sapiens), calpain 9 [TaxId: 9606]} Back     information, alignment and structure
>d1mdwa_ d.3.1.3 (A:) Calpain large subunit, catalytic domain (domain II) {Rat (Rattus norvegicus), M-type [TaxId: 10116]} Back     information, alignment and structure