Psyllid ID: psy295

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320------
MFNMSSSNSIGGGGRFQDQGPPDQEVEVVADFKIKVPQISPSIASFQIQMCNVLGLLILKYMLISRHNFCFSLQVIKMGYFTHTSQDDLVLKVTLDDVPFFNAPIYLQNKQQIGKIDEIFGSLKDYYVSVKVGDEVKSKSFKPNDLIPVLLVFKFKCVMYLLRLFILKYMLISRHNLCFSLQVIKMGYFTHTSQDDLVLKVTLDDVLVFCFQIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPENVFALNGEAKNREFAHKVIEETNHQWSKLIKGEVNAEGVAE
cccccccccccccccccccccccccEEEEEEEEEEcccccccccEEHHHHHHHHHHHHHHHHHHHcccccccccEEEccccccccccEEEEEEcccccccccccccccccccccccccccccccEEEEEEEcccccccccccccccccEEEEccccccccHHHHEEEEEEEEccccEEccccccccccccccccccccccccccEEEEEcccccccccEEEEEEEEEEEEEEccccccEEEEEEcccccccccccccccccccccHHHHHHHHHHHccccccccccEEccccccccHHHHHHHHHHHHHHHHHHHccccccccccc
ccccccccccccccccccccccccEEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHEEHEEEEcccEEccccccEEEEEEccccccccccEEEccccccccHHHHHcccccEEEEEEEcccccccccccccccEEEEEEHHHHHHHHHHHHHHHHHHHHccccccccEEEccccccccccccccccccccEEEEccccccccccEEEEEEEEEEEEccccEcEEEEEEEEcccccHHHcccHHHHHHHcccHHHHHHHHHHHccHHHccccccEcHHHccEcHHHHHHHHHHHHHHHHHHHccccccccccc
mfnmsssnsiggggrfqdqgppdqevEVVADFkikvpqispsiASFQIQMCNVLGLLILKYMLISRHNFCFSLQVIKMgyfthtsqddLVLKVtlddvpffnapiylqnkqqigKIDEIFGSLKDYYVSVKVgdevksksfkpndlipVLLVFKFKCVMYLLRLFILKYMLISRHNLCFSLQVIKMgyfthtsqddLVLKVTLDDVLVFCFQIAKRGEIIQVKALGViglidegqtdWKIIAINvndpnaaklndvadiethfpgylkaTNEWFkiykipdgkpenvfalngeaknREFAHKVIEETNHQWSKLIKGevnaegvae
mfnmsssnsiggggrfqdqgpPDQEVEVVADFKIKVPQISPSIASFQIQMCNVLGLLILKYMLISRHNFCFSLQVIKMGYFTHTSQDDLVLKVTLDDVPFFNapiylqnkqqiGKIDEIFGSLKDYYVSVKVGdevksksfkpndlipvLLVFKFKCVMYLLRLFILKYMLISRHNLCFSLQVIKMGYFTHTSQDDLVLKVTLDDVLVFCFQIakrgeiiqvKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPENVFALNGEAKNREFAHKVIEEtnhqwsklikgevnaegvae
MFNMsssnsiggggRFQDQGPPDQEVEVVADFKIKVPQISPSIASFQIQMCNVLGLLILKYMLISRHNFCFSLQVIKMGYFTHTSQddlvlkvtlddvPFFNAPIYLQNKQQIGKIDEIFGSLKDYYVSVKVGDEVKSKSFKPNDLIPVLLVFKFKCVMYLLRLFILKYMLISRHNLCFSLQVIKMGYFTHTSQddlvlkvtlddvlvFCFQIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPENVFALNGEAKNREFAHKVIEETNHQWSKLIKGEVNAEGVAE
**************************EVVADFKIKVPQISPSIASFQIQMCNVLGLLILKYMLISRHNFCFSLQVIKMGYFTHTSQDDLVLKVTLDDVPFFNAPIYLQNKQQIGKIDEIFGSLKDYYVSVKVGDEVKSKSFKPNDLIPVLLVFKFKCVMYLLRLFILKYMLISRHNLCFSLQVIKMGYFTHTSQDDLVLKVTLDDVLVFCFQIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPENVFALNGEAKNREFAHKVIEETNHQWSKLI***********
**********************DQEVEVVADFKIKVPQISPSIASFQIQMCNVLGLLIL***************VIKMGYFTHTSQDDLVLKVTLDDVPFFNAPIYLQNKQQIGKIDEIFGSLKDYYVSVKVGDEVKSKSFKPNDLIPVLLVFKFKCVMYLLRLFILKYMLISRHNLCFSLQVIKMGYFTHTSQDDLVLKVTLDDVLVFCFQIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPENVFALNGEAKNREFAHKVIEETNHQWSK*************
**********************DQEVEVVADFKIKVPQISPSIASFQIQMCNVLGLLILKYMLISRHNFCFSLQVIKMGYFTHTSQDDLVLKVTLDDVPFFNAPIYLQNKQQIGKIDEIFGSLKDYYVSVKVGDEVKSKSFKPNDLIPVLLVFKFKCVMYLLRLFILKYMLISRHNLCFSLQVIKMGYFTHTSQDDLVLKVTLDDVLVFCFQIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPENVFALNGEAKNREFAHKVIEETNHQWSKLIKGEVNAEGVAE
*****************DQGPPDQEVEVVADFKIKVPQISPSIASFQIQMCNVLGLLILKYMLISRHNFCFSLQVIKMGYFTHTSQDDLVLKVTLDDVPFFNAPIYLQNKQQIGKIDEIFGSLKDYYVSVKVGDEVKSKSFKPNDLIPVLLVFKFKCVMYLLRLFILKYMLISRHNLCFSLQVIKMGYFTHTSQDDLVLKVTLDDVLVFCFQIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPENVFALNGEAKNREFAHKVIEETNHQWSKLIKGE********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MFNMSSSNSIGGGGRFQDQGPPDQEVEVVADFKIKVPQISPSIASFQIQMCNVLGLLILKYMLISRHNFCFSLQVIKMGYFTHTSQDDLVLKVTLDDVPFFNAPIYLQNKQQIGKIDEIFGSLKDYYVSVKVGDEVKSKSFKPNDLIPVLLVFKFKCVMYLLRLFILKYMLISRHNLCFSLQVIKMGYFTHTSQDDLVLKVTLDDVLVFCFQIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPENVFALNGEAKNREFAHKVIEETNHQWSKLIKGEVNAEGVAE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query326 2.2.26 [Sep-21-2011]
P83777288 Inorganic pyrophosphatase N/A N/A 0.368 0.416 0.603 2e-37
Q6BWA5287 Inorganic pyrophosphatase yes N/A 0.371 0.421 0.581 3e-37
O77460338 Inorganic pyrophosphatase yes N/A 0.340 0.328 0.621 3e-37
P13998287 Inorganic pyrophosphatase no N/A 0.349 0.397 0.614 6e-37
P00817287 Inorganic pyrophosphatase yes N/A 0.349 0.397 0.605 8e-37
Q6FRB7287 Inorganic pyrophosphatase yes N/A 0.349 0.397 0.596 3e-36
Q9C0T9287 Inorganic pyrophosphatase N/A N/A 0.371 0.421 0.565 5e-36
P19117289 Inorganic pyrophosphatase yes N/A 0.444 0.501 0.483 6e-36
Q757J8287 Inorganic pyrophosphatase yes N/A 0.352 0.400 0.6 3e-35
O13505285 Inorganic pyrophosphatase yes N/A 0.407 0.466 0.514 7e-35
>sp|P83777|IPYR_CANAL Inorganic pyrophosphatase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=IPP1 PE=1 SV=2 Back     alignment and function desciption
 Score =  156 bits (395), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 73/121 (60%), Positives = 94/121 (77%), Gaps = 1/121 (0%)

Query: 205 DVLVFCFQIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFP 264
           DV     ++A  GE+ QVK LGV+ L+DEG+TDWK+I I+VNDP A KLND+ D+ETH P
Sbjct: 122 DVCEIGEKVATVGEVKQVKVLGVMALLDEGETDWKVIVIDVNDPLAPKLNDIEDVETHLP 181

Query: 265 GYLKATNEWFKIYKIPDGKPENVFALNGEAKNREFAHKVIEETNHQWSKLIKGE-VNAEG 323
           G L+ATNEWF+IYKIPDGKPEN FA +GE KN+++A +VI E    W KLIKGE V+++G
Sbjct: 182 GLLRATNEWFRIYKIPDGKPENQFAFSGECKNKKYAEEVIGECAEAWEKLIKGESVDSKG 241

Query: 324 V 324
           +
Sbjct: 242 I 242

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: 1
>sp|Q6BWA5|IPYR_DEBHA Inorganic pyrophosphatase OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=IPP1 PE=3 SV=1 Back     alignment and function description
>sp|O77460|IPYR_DROME Inorganic pyrophosphatase OS=Drosophila melanogaster GN=Nurf-38 PE=1 SV=3 Back     alignment and function description
>sp|P13998|IPYR_KLULA Inorganic pyrophosphatase OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=IPP1 PE=3 SV=2 Back     alignment and function description
>sp|P00817|IPYR_YEAST Inorganic pyrophosphatase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IPP1 PE=1 SV=4 Back     alignment and function description
>sp|Q6FRB7|IPYR_CANGA Inorganic pyrophosphatase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=IPP1 PE=3 SV=1 Back     alignment and function description
>sp|Q9C0T9|IPYR_ZYGBA Inorganic pyrophosphatase OS=Zygosaccharomyces bailii GN=IPP1 PE=3 SV=1 Back     alignment and function description
>sp|P19117|IPYR_SCHPO Inorganic pyrophosphatase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ppa1 PE=3 SV=2 Back     alignment and function description
>sp|Q757J8|IPYR_ASHGO Inorganic pyrophosphatase OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=IPP1 PE=3 SV=1 Back     alignment and function description
>sp|O13505|IPYR_PICPA Inorganic pyrophosphatase OS=Komagataella pastoris GN=IPP1 PE=3 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query326
332373982329 unknown [Dendroctonus ponderosae] 0.371 0.367 0.636 7e-40
383855060332 PREDICTED: inorganic pyrophosphatase-lik 0.371 0.364 0.628 2e-39
328777671332 PREDICTED: inorganic pyrophosphatase-lik 0.371 0.364 0.636 3e-39
380015525332 PREDICTED: LOW QUALITY PROTEIN: inorgani 0.371 0.364 0.636 7e-39
156550600342 PREDICTED: inorganic pyrophosphatase [Na 0.371 0.353 0.619 3e-38
340713101332 PREDICTED: inorganic pyrophosphatase-lik 0.371 0.364 0.644 4e-38
346468831342 hypothetical protein [Amblyomma maculatu 0.343 0.327 0.660 8e-38
401882865328 inorganic diphosphatase [Trichosporon as 0.662 0.658 0.394 1e-37
350417065332 PREDICTED: inorganic pyrophosphatase-lik 0.371 0.364 0.636 1e-37
321458041288 hypothetical protein DAPPUDRAFT_93571 [D 0.368 0.416 0.608 1e-37
>gi|332373982|gb|AEE62132.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
 Score =  170 bits (431), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 77/121 (63%), Positives = 100/121 (82%)

Query: 205 DVLVFCFQIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFP 264
           DVL   +++AKRGE++QVK LG I LIDEG+TDWK+IAI++NDP+A ++NDV+D+E HFP
Sbjct: 162 DVLEIGYRVAKRGEVLQVKVLGTIALIDEGETDWKLIAIDINDPSADQINDVSDVEKHFP 221

Query: 265 GYLKATNEWFKIYKIPDGKPENVFALNGEAKNREFAHKVIEETNHQWSKLIKGEVNAEGV 324
           G LKA+ EWFKIYKIPDGKPEN FA NGEAK+  FAHK+I+E +  W  LI  EV+A+G+
Sbjct: 222 GLLKASVEWFKIYKIPDGKPENHFAFNGEAKSAAFAHKIIDEVHAFWKTLIDKEVDAKGI 281

Query: 325 A 325
           +
Sbjct: 282 S 282

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|383855060|ref|XP_003703037.1| PREDICTED: inorganic pyrophosphatase-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|328777671|ref|XP_003249382.1| PREDICTED: inorganic pyrophosphatase-like [Apis mellifera] Back     alignment and taxonomy information
>gi|380015525|ref|XP_003691751.1| PREDICTED: LOW QUALITY PROTEIN: inorganic pyrophosphatase-like [Apis florea] Back     alignment and taxonomy information
>gi|156550600|ref|XP_001604166.1| PREDICTED: inorganic pyrophosphatase [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|340713101|ref|XP_003395087.1| PREDICTED: inorganic pyrophosphatase-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|346468831|gb|AEO34260.1| hypothetical protein [Amblyomma maculatum] Back     alignment and taxonomy information
>gi|401882865|gb|EJT47106.1| inorganic diphosphatase [Trichosporon asahii var. asahii CBS 2479] Back     alignment and taxonomy information
>gi|350417065|ref|XP_003491239.1| PREDICTED: inorganic pyrophosphatase-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|321458041|gb|EFX69116.1| hypothetical protein DAPPUDRAFT_93571 [Daphnia pulex] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query326
CGD|CAL0006016288 IPP1 [Candida albicans (taxid: 0.346 0.392 0.622 8e-37
UNIPROTKB|P83777288 IPP1 "Inorganic pyrophosphatas 0.346 0.392 0.622 8e-37
FB|FBgn0016687338 Nurf-38 "Nucleosome remodeling 0.322 0.310 0.638 4.4e-36
SGD|S000000215287 IPP1 "Cytoplasmic inorganic py 0.343 0.390 0.592 1.5e-35
POMBASE|SPAC23C11.05289 ipp1 "inorganic pyrophosphatas 0.325 0.366 0.603 5.1e-35
ASPGD|ASPL0000034810287 ippA [Emericella nidulans (tax 0.312 0.355 0.617 2.5e-33
WB|WBGene00008149407 pyp-1 [Caenorhabditis elegans 0.331 0.265 0.614 4.1e-33
RGD|1589773331 Ppa1 "pyrophosphatase (inorgan 0.349 0.344 0.526 1.8e-32
MGI|MGI:97831289 Ppa1 "pyrophosphatase (inorgan 0.349 0.394 0.517 4.7e-32
UNIPROTKB|F1PIJ6284 PPA1 "Uncharacterized protein" 0.349 0.401 0.508 7.7e-32
CGD|CAL0006016 IPP1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 71/114 (62%), Positives = 92/114 (80%)

Query:   212 QIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATN 271
             ++A  GE+ QVK LGV+ L+DEG+TDWK+I I+VNDP A KLND+ D+ETH PG L+ATN
Sbjct:   129 KVATVGEVKQVKVLGVMALLDEGETDWKVIVIDVNDPLAPKLNDIEDVETHLPGLLRATN 188

Query:   272 EWFKIYKIPDGKPENVFALNGEAKNREFAHKVIEETNHQWSKLIKGE-VNAEGV 324
             EWF+IYKIPDGKPEN FA +GE KN+++A +VI E    W KLIKGE V+++G+
Sbjct:   189 EWFRIYKIPDGKPENQFAFSGECKNKKYAEEVIGECAEAWEKLIKGESVDSKGI 242
GO:0030446 "hyphal cell wall" evidence=IDA
GO:0005634 "nucleus" evidence=IEA
GO:0005829 "cytosol" evidence=IEA
GO:0004427 "inorganic diphosphatase activity" evidence=IEA
GO:0042803 "protein homodimerization activity" evidence=IEA
UNIPROTKB|P83777 IPP1 "Inorganic pyrophosphatase" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
FB|FBgn0016687 Nurf-38 "Nucleosome remodeling factor - 38kD" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
SGD|S000000215 IPP1 "Cytoplasmic inorganic pyrophosphatase (PPase)" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
POMBASE|SPAC23C11.05 ipp1 "inorganic pyrophosphatase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ASPGD|ASPL0000034810 ippA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
WB|WBGene00008149 pyp-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
RGD|1589773 Ppa1 "pyrophosphatase (inorganic) 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:97831 Ppa1 "pyrophosphatase (inorganic) 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1PIJ6 PPA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6BWA5IPYR_DEBHA3, ., 6, ., 1, ., 10.58190.37110.4216yesN/A
Q757J8IPYR_ASHGO3, ., 6, ., 1, ., 10.60.35270.4006yesN/A
P37980IPYR_BOVIN3, ., 6, ., 1, ., 10.50410.37110.4186yesN/A
Q15181IPYR_HUMAN3, ., 6, ., 1, ., 10.50410.37110.4186yesN/A
Q9D819IPYR_MOUSE3, ., 6, ., 1, ., 10.50410.37110.4186yesN/A
O13505IPYR_PICPA3, ., 6, ., 1, ., 10.51400.40790.4666yesN/A
Q6C1T4IPYR_YARLI3, ., 6, ., 1, ., 10.56030.35580.4041yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.1.1LOW CONFIDENCE prediction!
3rd Layer3.6.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query326
PLN02707267 PLN02707, PLN02707, Soluble inorganic pyrophosphat 7e-48
cd00412155 cd00412, pyrophosphatase, Inorganic pyrophosphatas 1e-34
pfam00719156 pfam00719, Pyrophosphatase, Inorganic pyrophosphat 6e-30
COG0221171 COG0221, Ppa, Inorganic pyrophosphatase [Energy pr 2e-20
pfam04410154 pfam04410, Gar1, Gar1/Naf1 RNA binding region 6e-18
COG327798 COG3277, GAR1, RNA-binding protein involved in rRN 1e-13
PRK02230184 PRK02230, PRK02230, inorganic pyrophosphatase; Pro 1e-06
PRK00642205 PRK00642, PRK00642, inorganic pyrophosphatase; Pro 7e-06
PLN02373188 PLN02373, PLN02373, soluble inorganic pyrophosphat 4e-05
PRK1314973 PRK13149, PRK13149, H/ACA RNA-protein complex comp 0.003
>gnl|CDD|178309 PLN02707, PLN02707, Soluble inorganic pyrophosphatase Back     alignment and domain information 
 Score =  161 bits (409), Expect = 7e-48
 Identities = 58/111 (52%), Positives = 82/111 (73%)

Query: 213 IAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNE 272
            AK GE+++VK LGV+ +IDEG+ DWK++AI+ +DP A+ +NDV D+E HFPG L A  +
Sbjct: 153 AAKIGEVLKVKPLGVLAMIDEGELDWKVVAISADDPKASLVNDVDDVEKHFPGTLTAIRD 212

Query: 273 WFKIYKIPDGKPENVFALNGEAKNREFAHKVIEETNHQWSKLIKGEVNAEG 323
           WF+ YKIPDGKP N F L+ +  ++++A KVIEETN  W+KL+K  + A  
Sbjct: 213 WFRDYKIPDGKPANKFGLDNKPMDKDYALKVIEETNEAWAKLVKRSIPAGE 263

Length = 267
>gnl|CDD|238239 cd00412, pyrophosphatase, Inorganic pyrophosphatase Back     alignment and domain information
>gnl|CDD|189686 pfam00719, Pyrophosphatase, Inorganic pyrophosphatase Back     alignment and domain information
>gnl|CDD|223299 COG0221, Ppa, Inorganic pyrophosphatase [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|190975 pfam04410, Gar1, Gar1/Naf1 RNA binding region Back     alignment and domain information
>gnl|CDD|225816 COG3277, GAR1, RNA-binding protein involved in rRNA processing [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|179388 PRK02230, PRK02230, inorganic pyrophosphatase; Provisional Back     alignment and domain information
>gnl|CDD|179080 PRK00642, PRK00642, inorganic pyrophosphatase; Provisional Back     alignment and domain information
>gnl|CDD|178001 PLN02373, PLN02373, soluble inorganic pyrophosphatase Back     alignment and domain information
>gnl|CDD|183872 PRK13149, PRK13149, H/ACA RNA-protein complex component Gar1; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 326
PLN02707267 Soluble inorganic pyrophosphatase 100.0
PLN02373188 soluble inorganic pyrophosphatase 100.0
PRK00642205 inorganic pyrophosphatase; Provisional 100.0
PRK01250176 inorganic pyrophosphatase; Provisional 100.0
PRK02230184 inorganic pyrophosphatase; Provisional 100.0
cd00412155 pyrophosphatase Inorganic pyrophosphatase. These e 100.0
PF00719156 Pyrophosphatase: Inorganic pyrophosphatase; InterP 100.0
COG0221171 Ppa Inorganic pyrophosphatase [Energy production a 100.0
KOG1626|consensus279 100.0
KOG3262|consensus215 99.97
PRK1314973 H/ACA RNA-protein complex component Gar1; Reviewed 99.89
COG327798 GAR1 RNA-binding protein involved in rRNA processi 99.76
PF04410154 Gar1: Gar1/Naf1 RNA binding region; InterPro: IPR0 99.74
KOG2236|consensus483 97.89
PF0523979 PRC: PRC-barrel domain; InterPro: IPR007903 The PR 82.57
>PLN02707 Soluble inorganic pyrophosphatase Back     alignment and domain information 
Probab=100.00  E-value=9.3e-59  Score=436.72  Aligned_cols=181  Identities=36%  Similarity=0.578  Sum_probs=169.7

Q ss_pred             CCCccceEEecCCCceeeeEE------EEEEeccc-ccccccccCCCcccccccccCCCCC---------CCCCCCcceE
Q psy295          143 PNDLIPVLLVFKFKCVMYLLR------LFILKYML-ISRHNLCFSLQVIKMGYFTHTSQDD---------LVLKVTLDDV  206 (326)
Q Consensus       143 ~GDkI~vIEIp~gs~vKyE~d------~~~vDR~l-~s~~y~~~~~~P~nYGFIP~Tl~dD---------~~gDGDPLDV  206 (326)
                      ++..++|||||+||++|||+|      .|++||.+ ..++| .+ .+|+|||||||||+++         +.||||||||
T Consensus        69 ~~~vn~VVEIPrgs~~KyEidk~~~~npi~qD~~~g~lr~y-P~-~~~~NYGfIPqTwedp~~~~~~~~~l~gDgDPLDV  146 (267)
T PLN02707         69 DGTFNFVVEIPKETSAKMEVATDEPFTPIKQDTKKGKLRDY-PY-NINWNYGLLPQTWEDPTHANPEVEGAFGDNDPVDV  146 (267)
T ss_pred             CCEEEEEEEECCCCceeEEECccCCCCCEEEeeecCceEEC-CC-cCccccccccccccCcccccccccccCCCCCccEE
Confidence            688999999999999999998      69999999 77666 22 3455999999999864         3579999999


Q ss_pred             EEeccccccceeEEEEEEEEEEEeeeCCccceEEEEEecCCCCcCCCCCcccccccCcchHHHHHHHHhHccCCCCCCcc
Q psy295          207 LVFCFQIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPEN  286 (326)
Q Consensus       207 lVl~~~p~~pG~vv~vR~IGvL~MiDeGE~D~KIIaVp~~DP~~~~i~di~Dlp~~~P~~l~~I~~FF~~YK~leGK~vn  286 (326)
                      |||++.++.|||+++|||||+|+|+|+||+|||||||+++||+|++|+|++||++++|+++++|+|||++||.+|||++|
T Consensus       147 lvi~~~~~~pG~Vv~vR~IGvL~miDeGE~D~KIIaV~~~Dp~~~~i~di~Dv~~~~pg~l~~I~~fF~~YK~~eGK~~n  226 (267)
T PLN02707        147 VEIGERAAKIGEVLKVKPLGVLAMIDEGELDWKVVAISADDPKASLVNDVDDVEKHFPGTLTAIRDWFRDYKIPDGKPAN  226 (267)
T ss_pred             EEecCCCcCCccEEEEEEeEEEEEEeCCCCCCEEEEEECCCCcccccCChhHhhhhhhhHHHHHHHHHHHhcCCCCCcee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecccCcccCHHHHHHHHHHHHHHHHHhhcCccCCCCCC
Q psy295          287 VFALNGEAKNREFAHKVIEETNHQWSKLIKGEVNAEGVA  325 (326)
Q Consensus       287 ~f~~~~g~~~~e~A~~vI~~a~~~y~~l~~~~~~~~~~~  325 (326)
                      +|+++++|.|+++|+++|++||++|++++.++++.++++
T Consensus       227 ~~~~~~~~~~~~~A~~vI~e~~~~y~~l~~~~~~~~~~~  265 (267)
T PLN02707        227 KFGLDNKPMDKDYALKVIEETNEAWAKLVKRSIPAGELS  265 (267)
T ss_pred             eccccCCcCCHHHHHHHHHHHHHHHHHHhccCCCCCCcc
Confidence            999999999999999999999999999999999988876

>PLN02373 soluble inorganic pyrophosphatase Back     alignment and domain information
>PRK00642 inorganic pyrophosphatase; Provisional Back     alignment and domain information
>PRK01250 inorganic pyrophosphatase; Provisional Back     alignment and domain information
>PRK02230 inorganic pyrophosphatase; Provisional Back     alignment and domain information
>cd00412 pyrophosphatase Inorganic pyrophosphatase Back     alignment and domain information
>PF00719 Pyrophosphatase: Inorganic pyrophosphatase; InterPro: IPR008162 Inorganic pyrophosphatase (3 Back     alignment and domain information
>COG0221 Ppa Inorganic pyrophosphatase [Energy production and conversion] Back     alignment and domain information
>KOG1626|consensus Back     alignment and domain information
>KOG3262|consensus Back     alignment and domain information
>PRK13149 H/ACA RNA-protein complex component Gar1; Reviewed Back     alignment and domain information
>COG3277 GAR1 RNA-binding protein involved in rRNA processing [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF04410 Gar1: Gar1/Naf1 RNA binding region; InterPro: IPR007504 H/ACA ribonucleoprotein particles (RNPs) are a family of RNA pseudouridine synthases that specify modification sites through guide RNAs Back     alignment and domain information
>KOG2236|consensus Back     alignment and domain information
>PF05239 PRC: PRC-barrel domain; InterPro: IPR007903 The PRC-barrel is an all beta barrel domain found in photosynthetic reaction centre subunit H of the purple bacteria Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query326
2ik0_A286 Yeast Inorganic Pyrophosphatase Variant E48d With M 6e-37
8prk_A287 The R78k And D117e Active Site Variants Of Saccharo 6e-37
1wgi_A286 Structure Of Inorganic Pyrophosphatase Length = 286 6e-37
1m38_A287 Structure Of Inorganic Pyrophosphatase Length = 287 6e-37
117e_A286 The R78k And D117e Active Site Variants Of Saccharo 6e-37
2ik6_A286 Yeast Inorganic Pyrophosphatase Variant D120e With 6e-37
2ik2_A286 Yeast Inorganic Pyrophosphatase Variant D115e With 6e-37
1ypp_A286 Acid Anhydride Hydrolase Length = 286 6e-37
2ik7_A286 Yeast Inorganic Pyrophosphatase Variant D120n With 6e-37
2ik1_A286 Yeast Inorganic Pyrophosphatase Variant Y93f With M 6e-37
1huk_A281 Refined Structure Of Yeast Inorganic Pyrophosphatas 7e-37
1huj_A281 Refined Structure Of Yeast Inorganic Pyrophosphatas 7e-37
2ik9_A286 Yeast Inorganic Pyrophosphatase Variant D152e With 2e-36
1pyp_A285 X-Ray Diffraction Study Of Inorganic Pyrophosphatas 3e-36
3u28_C114 Crystal Structure Of A Cbf5-Nop10-Gar1 Complex From 1e-12
1ude_A195 Crystal Structure Of The Inorganic Pyrophosphatase 7e-05
3i98_A178 X-Ray Crystallographic Structure Of Inorganic Pyrop 1e-04
3q46_A178 Magnesium Activated Inorganic Pyrophosphatase From 1e-04
1twl_A186 Inorganic Pyrophosphatase From Pyrococcus Furiosus 4e-04
3r6e_A178 The Structure Of Thermococcus Thioreducens' Inorgan 8e-04
>pdb|2IK0|A Chain A, Yeast Inorganic Pyrophosphatase Variant E48d With Magnesium And Phosphate Length = 286 Back     alignment and structure 
Iteration: 1

 Score =  151 bits (381), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 66/106 (62%), Positives = 89/106 (83%)
Query: 213 IAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNE 272
           IA  G++ QVKALG++ L+DEG+TDWK+IAI++NDP A KLND+ D+E +FPG L+ATNE
Sbjct: 128 IAYTGQVKQVKALGIMALLDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNE 187
Query: 273 WFKIYKIPDGKPENVFALNGEAKNREFAHKVIEETNHQWSKLIKGE 318
           WF+IYKIPDGKPEN FA +GEAKN+++A  +I+ET+  W +LI G+
Sbjct: 188 WFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIAGK 233
>pdb|8PRK|A Chain A, The R78k And D117e Active Site Variants Of Saccharomyces Cerevisiae Soluble Inorganic Pyrophosphatase: Structural Studies And Mechanistic Implications Length = 287 Back     alignment and structure
>pdb|1WGI|A Chain A, Structure Of Inorganic Pyrophosphatase Length = 286 Back     alignment and structure
>pdb|1M38|A Chain A, Structure Of Inorganic Pyrophosphatase Length = 287 Back     alignment and structure
>pdb|117E|A Chain A, The R78k And D117e Active Site Variants Of Saccharomyces Cerevisiae Soluble Inorganic Pyrophosphatase: Structural Studies And Mechanistic Implications Length = 286 Back     alignment and structure
>pdb|2IK6|A Chain A, Yeast Inorganic Pyrophosphatase Variant D120e With Magnesium And Phosphate Length = 286 Back     alignment and structure
>pdb|2IK2|A Chain A, Yeast Inorganic Pyrophosphatase Variant D115e With Magnesium And Phosphate Length = 286 Back     alignment and structure
>pdb|1YPP|A Chain A, Acid Anhydride Hydrolase Length = 286 Back     alignment and structure
>pdb|2IK7|A Chain A, Yeast Inorganic Pyrophosphatase Variant D120n With Magnesium And Phosphate Length = 286 Back     alignment and structure
>pdb|2IK1|A Chain A, Yeast Inorganic Pyrophosphatase Variant Y93f With Magnesium And Phosphate Length = 286 Back     alignment and structure
>pdb|1HUK|A Chain A, Refined Structure Of Yeast Inorganic Pyrophosphatase And Its K61r Mutant Length = 281 Back     alignment and structure
>pdb|1HUJ|A Chain A, Refined Structure Of Yeast Inorganic Pyrophosphatase And Its K61r Mutant Length = 281 Back     alignment and structure
>pdb|2IK9|A Chain A, Yeast Inorganic Pyrophosphatase Variant D152e With Magnesium And Phosphate Length = 286 Back     alignment and structure
>pdb|1PYP|A Chain A, X-Ray Diffraction Study Of Inorganic Pyrophosphatase From Baker,S Yeast At The 3 Angstroms Resolution (Russian) Length = 285 Back     alignment and structure
>pdb|3U28|C Chain C, Crystal Structure Of A Cbf5-Nop10-Gar1 Complex From Saccharomyces Cerevisiae Length = 114 Back     alignment and structure
>pdb|1UDE|A Chain A, Crystal Structure Of The Inorganic Pyrophosphatase From The Hyperthermophilic Archaeon Pyrococcus Horikoshii Ot3 Length = 195 Back     alignment and structure
>pdb|3I98|A Chain A, X-Ray Crystallographic Structure Of Inorganic Pyrophosphatase At 298k From Archaeon Thermococcus Thioreducens Length = 178 Back     alignment and structure
>pdb|3Q46|A Chain A, Magnesium Activated Inorganic Pyrophosphatase From Thermococcus Thioreducens Bound To Hydrolyzed Product At 0.99 Angstrom Resolution Length = 178 Back     alignment and structure
>pdb|1TWL|A Chain A, Inorganic Pyrophosphatase From Pyrococcus Furiosus Pfu-264096-001 Length = 186 Back     alignment and structure
>pdb|3R6E|A Chain A, The Structure Of Thermococcus Thioreducens' Inorganic Pyrophosphatase Bound To Sulfate Length = 178 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query326
1e9g_A286 Ppase, inorganic pyrophosphatase; pyrophosphate ph 2e-42
3u28_C114 H/ACA ribonucleoprotein complex subunit 1; pseudou 9e-27
3q46_A178 TT-ippase; inorganic pyrophosphatase, hydrolase; H 1e-13
2prd_A174 Pyrophosphate phosphohydrolase; 2.00A {Thermus the 2e-13
1sxv_A172 Inorganic pyrophosphatase; structural genomics, pp 8e-13
3ld3_A199 Inorganic pyrophosphatase; structural genomics, se 7e-12
3d53_A173 Inorganic pyrophosphatase; seattle structural G ce 1e-11
2au7_A175 Inorganic pyrophosphatase; hydrolase, mutant; 1.05 1e-11
3gvf_A196 Inorganic pyrophosphatase; structural genomics, hy 2e-11
2bqx_A173 Inorganic pyrophosphatase; hydrolase; 1.90A {Helic 2e-11
3tr4_A178 Inorganic pyrophosphatase; central intermediary me 3e-11
3fq3_A197 Inorganic pyrophosphatase:bacterial/archaeal INOR 4e-11
1qez_A173 Ppase, S-ppase, protein (inorganic pyrophosphatase 4e-11
2hvy_B104 GAR1, small nucleolar RNP similar to GAR1; H/ACA R 5e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
2ey4_C82 Small nucleolar RNP similar to GAR1; trimeric comp 6e-06
>1e9g_A Ppase, inorganic pyrophosphatase; pyrophosphate phosphohydrolase, hydrolase, manganese; HET: PO4; 1.15A {Saccharomyces cerevisiae} SCOP: b.40.5.1 PDB: 1e6a_A* 1wgi_A 1wgj_A 2ihp_A* 8prk_A 2ik6_A 2ik2_A 2ik4_A 117e_A 2ik1_A* 2ik9_A 2ik0_A 2ik7_A 1m38_A 1ypp_A 1huk_A 1huj_A 1pyp_A Length = 286 Back     alignment and structure
 Score =  147 bits (372), Expect = 2e-42
 Identities = 74/145 (51%), Positives = 99/145 (68%), Gaps = 8/145 (5%)

Query: 187 GYFTHT----SQDDLVLKVTLD----DVLVFCFQIAKRGEIIQVKALGVIGLIDEGQTDW 238
           G F  T    +      K   D    DVL     IA  G++ QVKALG++ L+DEG+TDW
Sbjct: 94  GAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDW 153

Query: 239 KIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPENVFALNGEAKNRE 298
           K+IAI++NDP A KLND+ D+E +FPG L+ATNEWF+IYKIPDGKPEN FA +GEAKN++
Sbjct: 154 KVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGEAKNKK 213

Query: 299 FAHKVIEETNHQWSKLIKGEVNAEG 323
           +A  +I+ET+  W +LI G+ +   
Sbjct: 214 YALDIIKETHDSWKQLIAGKSSDSK 238
>3u28_C H/ACA ribonucleoprotein complex subunit 1; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_C Length = 114 Back     alignment and structure
>3q46_A TT-ippase; inorganic pyrophosphatase, hydrolase; HET: EPE; 0.99A {Thermococcus thioreducens} PDB: 3r6e_A* 3q3l_A 3i98_A 3q4w_A 3q9m_A* 3r5u_A 3r5v_A* 3q5v_A* 1ude_A 1twl_A Length = 178 Back     alignment and structure
>2prd_A Pyrophosphate phosphohydrolase; 2.00A {Thermus thermophilus} SCOP: b.40.5.1 Length = 174 Back     alignment and structure
>1sxv_A Inorganic pyrophosphatase; structural genomics, ppase,, hydrolase; 1.30A {Mycobacterium tuberculosis} PDB: 1wcf_A 2uxs_A 4ecp_A Length = 172 Back     alignment and structure
>3ld3_A Inorganic pyrophosphatase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.75A {Anaplasma phagocytophilum} PDB: 3lo0_A Length = 199 Back     alignment and structure
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A* Length = 173 Back     alignment and structure
>2au7_A Inorganic pyrophosphatase; hydrolase, mutant; 1.05A {Escherichia coli} PDB: 1i40_A 1i6t_A 1igp_A 1obw_A 2au6_A 2au8_A 2au9_A 2auu_A 1mjy_A 1faj_A 1ino_A 1ipw_A 1jfd_A 2eip_A 1mjz_A 1mjx_A 1mjw_A 3i4q_A* Length = 175 Back     alignment and structure
>3gvf_A Inorganic pyrophosphatase; structural genomics, hydrolase, S structural genomics center for infectious disease, ssgcid; HET: PGE; 1.75A {Burkholderia pseudomallei 1710B} PDB: 3d63_A* 3eiy_A 3ej0_A* 3ej2_A* 3eiz_A* Length = 196 Back     alignment and structure
>2bqx_A Inorganic pyrophosphatase; hydrolase; 1.90A {Helicobacter pylori} PDB: 1ygz_A 2bqy_A Length = 173 Back     alignment and structure
>3tr4_A Inorganic pyrophosphatase; central intermediary metabolism, hydrolase; HET: MSE; 2.00A {Coxiella burnetii} Length = 178 Back     alignment and structure
>3fq3_A Inorganic pyrophosphatase:bacterial/archaeal INOR pyrophosphatase; ssgcid, inorganic phosphatase; 1.90A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3sw5_A Length = 197 Back     alignment and structure
>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase); thermostability, magnesium, hydrolase; 2.70A {Sulfolobus acidocaldarius} SCOP: b.40.5.1 Length = 173 Back     alignment and structure
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP, pseudouridine synthase, guide RNA, isomerase biosynthetic protein-RNA complex; HET: ATP; 2.30A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B* Length = 104 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2ey4_C Small nucleolar RNP similar to GAR1; trimeric complex, structural genomics, PSI, protein structur initiative; 2.11A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3mqk_C 2rfk_C Length = 82 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query326
3q46_A178 TT-ippase; inorganic pyrophosphatase, hydrolase; H 100.0
3gvf_A196 Inorganic pyrophosphatase; structural genomics, hy 100.0
3fq3_A197 Inorganic pyrophosphatase:bacterial/archaeal INOR 100.0
1qez_A173 Ppase, S-ppase, protein (inorganic pyrophosphatase 100.0
3tr4_A178 Inorganic pyrophosphatase; central intermediary me 100.0
2prd_A174 Pyrophosphate phosphohydrolase; 2.00A {Thermus the 100.0
1sxv_A172 Inorganic pyrophosphatase; structural genomics, pp 100.0
1e9g_A286 Ppase, inorganic pyrophosphatase; pyrophosphate ph 100.0
2au7_A175 Inorganic pyrophosphatase; hydrolase, mutant; 1.05 100.0
3ld3_A199 Inorganic pyrophosphatase; structural genomics, se 100.0
2bqx_A173 Inorganic pyrophosphatase; hydrolase; 1.90A {Helic 100.0
3d53_A173 Inorganic pyrophosphatase; seattle structural G ce 100.0
3u28_C114 H/ACA ribonucleoprotein complex subunit 1; pseudou 99.98
2ey4_C82 Small nucleolar RNP similar to GAR1; trimeric comp 99.91
2hvy_B104 GAR1, small nucleolar RNP similar to GAR1; H/ACA R 99.89
2eqn_A103 Hypothetical protein LOC92345; NAF1 domain, hypoth 99.85
2v3m_A131 NAF1; ribosomal protein, GAR1, snoRNP, phosphoryla 99.83
>3q46_A TT-ippase; inorganic pyrophosphatase, hydrolase; HET: EPE; 0.99A {Thermococcus thioreducens} SCOP: b.40.5.1 PDB: 3r6e_A* 3q3l_A 3i98_A 3q4w_A 3q9m_A* 3r5u_A 3r5v_A* 3q5v_A* 1ude_A 1twl_A Back     alignment and structure
Probab=100.00  E-value=1.2e-59  Score=419.86  Aligned_cols=162  Identities=23%  Similarity=0.342  Sum_probs=152.2

Q ss_pred             ccCCCCccceEEecCCCceeeeEE----EEEEeccc-ccccccccCCCcccccccccCCCCCCCCCCCcceEEEeccccc
Q psy295          140 SFKPNDLIPVLLVFKFKCVMYLLR----LFILKYML-ISRHNLCFSLQVIKMGYFTHTSQDDLVLKVTLDDVLVFCFQIA  214 (326)
Q Consensus       140 SFk~GDkI~vIEIp~gs~vKyE~d----~~~vDR~l-~s~~y~~~~~~P~nYGFIP~Tl~dD~~gDGDPLDVlVl~~~p~  214 (326)
                      .-.++..++|||||+||++|||+|    .+++||++ ++++|      |+|||||||||++|    |||||||||++.|+
T Consensus        11 ~~~p~~~nvvIEIP~gs~~KyE~dk~~g~i~~DR~l~~~~~Y------P~NYGfIP~Tl~~D----gDPlDvlvl~~~~~   80 (178)
T 3q46_A           11 PEVPEVVYALIEIPKGSRNKYELDKATGLLKLDRVLYSPFFY------PVDYGIIPQTWYDD----GDPFDIMVIMREPV   80 (178)
T ss_dssp             SBTTTBCCCEEEECTTCCEEEEECTTTSCEEEEEECSSSCCC------SSEEEECTTCCBTT----TBCCEEEECCSSCC
T ss_pred             CCCCCEEEEEEEECCCCCeeEEECCCCCCEEEeecccCCCCC------CcccccCCCccCCC----CCeeEEEEEcCCCC
Confidence            335788999999999999999999    99999999 99999      99999999999998    99999999999999


Q ss_pred             cceeEEEEEEEEEEEeeeCCccceEEEEEecCCCCcCCCCCcccccccCcchHHHHHHHHhHccCCCCCCcceecccCcc
Q psy295          215 KRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPENVFALNGEA  294 (326)
Q Consensus       215 ~pG~vv~vR~IGvL~MiDeGE~D~KIIaVp~~DP~~~~i~di~Dlp~~~P~~l~~I~~FF~~YK~leGK~vn~f~~~~g~  294 (326)
                      +|||+++|||||+|+|+|+||+||||||||++||+|++++|++||++   +++++|+|||++||.||||+++.    .+|
T Consensus        81 ~pG~vi~~r~iGvl~m~Dege~D~KiiaV~~~Dp~~~~i~di~Dl~~---~~l~~i~~fF~~YK~legK~v~~----~g~  153 (178)
T 3q46_A           81 YPLTIIEARPIGIMKMEDSGDKDWKVLAVPVEDPYFNDWKDISDVPK---AFLDEIAHFFQRYKELQGKTTKI----EGW  153 (178)
T ss_dssp             CTTCBC-CEEEEEEEEEETTEECCEEEEECTTCGGGTTCCSGGGSCH---HHHHHHHHHHHHTTGGGTCCEEE----EEE
T ss_pred             CCceEEEEEEEEEEEeecCCCccceEEEeeCCCccccccCChHHCCH---HHHHHHHHHHHHhcCcCCCceEe----ccc
Confidence            99999999999999999999999999999999999999999999995   59999999999999999999965    469


Q ss_pred             cCHHHHHHHHHHHHHHHHHhhcCc
Q psy295          295 KNREFAHKVIEETNHQWSKLIKGE  318 (326)
Q Consensus       295 ~~~e~A~~vI~~a~~~y~~l~~~~  318 (326)
                      .|+++|+++|++||++|++++..+
T Consensus       154 ~~~~~A~~~I~~~~~~~~~~~~~~  177 (178)
T 3q46_A          154 GNAEEAKREILRAIEMYKEKFGKE  177 (178)
T ss_dssp             EEHHHHHHHHHHHHHHHHHC-CCC
T ss_pred             cCHHHHHHHHHHHHHHHHHHhccC
Confidence            999999999999999999998643
>3gvf_A Inorganic pyrophosphatase; structural genomics, hydrolase, S structural genomics center for infectious disease, ssgcid; HET: PGE; 1.75A {Burkholderia pseudomallei 1710B} PDB: 3d63_A* 3eiy_A 3ej0_A* 3ej2_A* 3eiz_A* Back     alignment and structure
>3fq3_A Inorganic pyrophosphatase:bacterial/archaeal INOR pyrophosphatase; ssgcid, inorganic phosphatase; 1.90A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3sw5_A Back     alignment and structure
>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase); thermostability, magnesium, hydrolase; 2.70A {Sulfolobus acidocaldarius} SCOP: b.40.5.1 Back     alignment and structure
>3tr4_A Inorganic pyrophosphatase; central intermediary metabolism, hydrolase; HET: MSE; 2.00A {Coxiella burnetii} SCOP: b.40.5.0 Back     alignment and structure
>2prd_A Pyrophosphate phosphohydrolase; 2.00A {Thermus thermophilus} SCOP: b.40.5.1 Back     alignment and structure
>1sxv_A Inorganic pyrophosphatase; structural genomics, ppase,, hydrolase; 1.30A {Mycobacterium tuberculosis} PDB: 1wcf_A 2uxs_A 4ecp_A Back     alignment and structure
>1e9g_A Ppase, inorganic pyrophosphatase; pyrophosphate phosphohydrolase, hydrolase, manganese; HET: PO4; 1.15A {Saccharomyces cerevisiae} SCOP: b.40.5.1 PDB: 1e6a_A* 1wgi_A 1wgj_A 2ihp_A* 8prk_A 2ik6_A 2ik2_A 2ik4_A 117e_A 2ik1_A* 2ik9_A 2ik0_A 2ik7_A 1m38_A 1ypp_A 1huk_A 1huj_A 1pyp_A Back     alignment and structure
>2au7_A Inorganic pyrophosphatase; hydrolase, mutant; 1.05A {Escherichia coli} PDB: 1i40_A 1i6t_A 1igp_A 1obw_A 2au6_A 2au8_A 2au9_A 2auu_A 1mjy_A 1faj_A 1ino_A 1ipw_A 1jfd_A 2eip_A 1mjz_A 1mjx_A 1mjw_A 3i4q_A* Back     alignment and structure
>3ld3_A Inorganic pyrophosphatase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.75A {Anaplasma phagocytophilum} PDB: 3lo0_A Back     alignment and structure
>2bqx_A Inorganic pyrophosphatase; hydrolase; 1.90A {Helicobacter pylori} PDB: 1ygz_A 2bqy_A Back     alignment and structure
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A* Back     alignment and structure
>3u28_C H/ACA ribonucleoprotein complex subunit 1; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_C Back     alignment and structure
>2ey4_C Small nucleolar RNP similar to GAR1; trimeric complex, structural genomics, PSI, protein structur initiative; 2.11A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3mqk_C 2rfk_C Back     alignment and structure
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP, pseudouridine synthase, guide RNA, isomerase biosynthetic protein-RNA complex; HET: ATP; 2.30A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B* Back     alignment and structure
>2eqn_A Hypothetical protein LOC92345; NAF1 domain, hypothetical protein BC008207 [HOMO sapiens], structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2v3m_A NAF1; ribosomal protein, GAR1, snoRNP, phosphorylation, hypothetical protein; 2.74A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 326
d1e9ga_284 b.40.5.1 (A:) Inorganic pyrophosphatase {Baker's y 2e-36
d2prda_174 b.40.5.1 (A:) Inorganic pyrophosphatase {Thermus t 4e-24
d1twla_173 b.40.5.1 (A:) Inorganic pyrophosphatase {Pyrococcu 8e-24
d1i40a_175 b.40.5.1 (A:) Inorganic pyrophosphatase {Escherich 4e-20
d1qeza_170 b.40.5.1 (A:) Inorganic pyrophosphatase {Archaeon 2e-17
d2ey4c173 b.43.3.5 (C:1-73) Gar1 homolog PF1791 {Archaeon Py 1e-14
>d1e9ga_ b.40.5.1 (A:) Inorganic pyrophosphatase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 284 Back     information, alignment and structure

class: All beta proteins
fold: OB-fold
superfamily: Inorganic pyrophosphatase
family: Inorganic pyrophosphatase
domain: Inorganic pyrophosphatase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  130 bits (329), Expect = 2e-36
 Identities = 75/146 (51%), Positives = 100/146 (68%), Gaps = 8/146 (5%)

Query: 186 MGYFTHTSQD----DLVLKVTLD----DVLVFCFQIAKRGEIIQVKALGVIGLIDEGQTD 237
            G F  T +D        K   D    DVL     IA  G++ QVKALG++ L+DEG+TD
Sbjct: 93  YGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETD 152

Query: 238 WKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPENVFALNGEAKNR 297
           WK+IAI++NDP A KLND+ D+E +FPG L+ATNEWF+IYKIPDGKPEN FA +GEAKN+
Sbjct: 153 WKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGEAKNK 212

Query: 298 EFAHKVIEETNHQWSKLIKGEVNAEG 323
           ++A  +I+ET+  W +LI G+ +   
Sbjct: 213 KYALDIIKETHDSWKQLIAGKSSDSK 238
>d2prda_ b.40.5.1 (A:) Inorganic pyrophosphatase {Thermus thermophilus [TaxId: 274]} Length = 174 Back     information, alignment and structure
>d1twla_ b.40.5.1 (A:) Inorganic pyrophosphatase {Pyrococcus furiosus [TaxId: 2261]} Length = 173 Back     information, alignment and structure
>d1i40a_ b.40.5.1 (A:) Inorganic pyrophosphatase {Escherichia coli [TaxId: 562]} Length = 175 Back     information, alignment and structure
>d1qeza_ b.40.5.1 (A:) Inorganic pyrophosphatase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 170 Back     information, alignment and structure
>d2ey4c1 b.43.3.5 (C:1-73) Gar1 homolog PF1791 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 73 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query326
d1e9ga_284 Inorganic pyrophosphatase {Baker's yeast (Saccharo 100.0
d2prda_174 Inorganic pyrophosphatase {Thermus thermophilus [T 100.0
d1twla_173 Inorganic pyrophosphatase {Pyrococcus furiosus [Ta 100.0
d1qeza_170 Inorganic pyrophosphatase {Archaeon Sulfolobus aci 100.0
d1i40a_175 Inorganic pyrophosphatase {Escherichia coli [TaxId 100.0
d2ey4c173 Gar1 homolog PF1791 {Archaeon Pyrococcus furiosus 99.67
>d1e9ga_ b.40.5.1 (A:) Inorganic pyrophosphatase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All beta proteins
fold: OB-fold
superfamily: Inorganic pyrophosphatase
family: Inorganic pyrophosphatase
domain: Inorganic pyrophosphatase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3e-57  Score=425.76  Aligned_cols=177  Identities=44%  Similarity=0.698  Sum_probs=165.8

Q ss_pred             CCCccceEEecCCCceeeeEE---------------EEEEeccc-ccccccccCCCcccccccccCCCCCC--------C
Q psy295          143 PNDLIPVLLVFKFKCVMYLLR---------------LFILKYML-ISRHNLCFSLQVIKMGYFTHTSQDDL--------V  198 (326)
Q Consensus       143 ~GDkI~vIEIp~gs~vKyE~d---------------~~~vDR~l-~s~~y~~~~~~P~nYGFIP~Tl~dD~--------~  198 (326)
                      ++..++|||||+||++|||++               .+++||.+ +++.|      |+|||||||||+++.        +
T Consensus        40 ~~~~nvVVEIPrgsn~KyEi~ke~~~npIkqD~k~G~lr~~r~l~~~~~Y------P~NYGfIPqTwedp~~~~~~~~~~  113 (284)
T d1e9ga_          40 NNIFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGY------IHNYGAFPQTWEDPNVSHPETKAV  113 (284)
T ss_dssp             TTEEEEEEEECTTCCBCEEECTTSTTCCEEECEETTEECBCCEETTCCSC------SSEEEECSSCCCCTTSEETTTTEE
T ss_pred             CCEEEEEEEeCCCCCeeEEECcCCCCCceeeeccCCCEEEEeccCCCCCC------CcccccCcccccCccccccccccc
Confidence            345678999999999999994               68999999 88888      999999999999853        4


Q ss_pred             CCCCcceEEEeccccccceeEEEEEEEEEEEeeeCCccceEEEEEecCCCCcCCCCCcccccccCcchHHHHHHHHhHcc
Q psy295          199 LKVTLDDVLVFCFQIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYK  278 (326)
Q Consensus       199 gDGDPLDVlVl~~~p~~pG~vv~vR~IGvL~MiDeGE~D~KIIaVp~~DP~~~~i~di~Dlp~~~P~~l~~I~~FF~~YK  278 (326)
                      |||||||||||++.++.||++++|||||+|+|+|+||+|||||||+++||++++++|++||++++|++|++|+|||++||
T Consensus       114 GDgDPLDVlvi~~~~~~~G~Vv~vk~lGvL~miDeGE~D~KIIaV~~~Dp~~~~~ndI~Dv~~~~p~~l~~i~~fF~~YK  193 (284)
T d1e9ga_         114 GDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYK  193 (284)
T ss_dssp             BCSSCCEEEECCSSCCCTTCEEEEEEEEEECEEETTEECCEEEEEETTSTTGGGCCSHHHHHHHSTTHHHHHHHHHHHTT
T ss_pred             CCCCCeeEEEecccccccceEEEEEEEEEEEeccCCCccceEEEeecCCccccccCChhhhhhhCHHHHHHHHHHHHHhc
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcceecccCcccCHHHHHHHHHHHHHHHHHhhcCccCCC-CCC
Q psy295          279 IPDGKPENVFALNGEAKNREFAHKVIEETNHQWSKLIKGEVNAE-GVA  325 (326)
Q Consensus       279 ~leGK~vn~f~~~~g~~~~e~A~~vI~~a~~~y~~l~~~~~~~~-~~~  325 (326)
                      .++||++|.|+++++|.++++|+++|++||++|++|++|+..++ +++
T Consensus       194 ~~eGK~~n~~~~~g~~~~k~~A~~iI~e~h~~wk~li~g~~~~~~~~~  241 (284)
T d1e9ga_         194 IPDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIAGKSSDSKGID  241 (284)
T ss_dssp             GGGTCCCCEEGGGGCCBCHHHHHHHHHHHHHHHHHHHTTCCSCCTTCC
T ss_pred             CCCCCceeEeeccCcccCHHHHHHHHHHHHHHHHHHhcCcCCCCCccc
Confidence            99999999999999999999999999999999999999886544 443
>d2prda_ b.40.5.1 (A:) Inorganic pyrophosphatase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1twla_ b.40.5.1 (A:) Inorganic pyrophosphatase {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1qeza_ b.40.5.1 (A:) Inorganic pyrophosphatase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1i40a_ b.40.5.1 (A:) Inorganic pyrophosphatase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ey4c1 b.43.3.5 (C:1-73) Gar1 homolog PF1791 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure