Psyllid ID: psy2967

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-
Protein Sequence
MELTLSGQFSQDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSIYMVDAADTDKLEASRNELHALIEKL
Secondary Structure (PSIPRED)
cccEEcccccccEEEEEEcccccccccccEEEEccccccccccccccccEEEEEEEEccEEEEEEEEcccccccEEEEEEcccHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccEEHHHHHHHHHHHHHHHHHHHHHccccEHHHEEccccEEEccEEEccEEEEEEEEccEEEEEEEEcccHHHHHHHEEEcccHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
meltlsgqfsqdmiptvgfnmrkitkgnvtiwpvplsgqfsqdmiptvgfnmrkitkgnVTIKVwdiggqprfrsiymvdaadtdkLEASRNELHALIEKL
Flexible Loop (DISEMBL)
meltlsgqfsqdmipTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSIYMVDAADTDKLEASRNELHALIEKL
Low Complexity Region (SEG)
MELTLSGQFSQDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSIYMVDAADTDKLEASRNELHALIEKL
Disordered region (IsUnstruct)
************MIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSIYMVDAA*******************
Disordered Region (DISOPRED)
*E*T***QFSQDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSIYMVDAADTDKLEASRNELHALIEKL
Disordered Region (DISEMBL)
MELTLSGQFSQDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSIYMVDAADTDKLEASRNELHALIEKL
Disordered Region (DISPRO)
*ELTLSGQFSQDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSIYMVDAADTDKLEASRNELHALIEKL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELTLSGQFSQDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSIYMVDAADTDKLEASRNELHALIEKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	101	2.2.26 [Sep-21-2011]
Q9VHV5	186	ADP-ribosylation factor-l	yes	N/A	0.831	0.451	0.601	2e-27
Q6NZW8	186	ADP-ribosylation factor-l	yes	N/A	0.831	0.451	0.575	3e-26
Q66HA6	186	ADP-ribosylation factor-l	yes	N/A	0.831	0.451	0.566	3e-26
Q9CQW2	186	ADP-ribosylation factor-l	yes	N/A	0.831	0.451	0.566	3e-26
Q9NVJ2	186	ADP-ribosylation factor-l	yes	N/A	0.831	0.451	0.566	3e-26
Q6P8C8	186	ADP-ribosylation factor-l	no	N/A	0.831	0.451	0.575	4e-26
Q4R4S4	186	ADP-ribosylation factor-l	N/A	N/A	0.831	0.451	0.557	5e-26
Q8VEH3	186	ADP-ribosylation factor-l	no	N/A	0.831	0.451	0.566	1e-25
Q2KI07	186	ADP-ribosylation factor-l	yes	N/A	0.831	0.451	0.557	1e-25
Q5ZKQ8	186	ADP-ribosylation factor-l	no	N/A	0.831	0.451	0.566	2e-25

>sp|Q9VHV5|ARL8_DROME ADP-ribosylation factor-like protein 8 OS=Drosophila melanogaster GN=Gie PE=1 SV=1

 Score =  121 bits (303), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/113 (60%), Positives = 75/113 (66%), Gaps = 29/113 (25%)

Query: 1   MELTLSG-QFSQDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGN 59
           MELTL G QFS                G  T   V  SGQF++DMIPTVGFNMRKIT+GN
Sbjct: 21  MELTLVGLQFS----------------GKTTFVNVIASGQFAEDMIPTVGFNMRKITRGN 64

Query: 60  VTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNELHALIEK 100
           VTIKVWDIGGQPRFRS            +YMVDAAD DKLEASRNELH+L++K
Sbjct: 65  VTIKVWDIGGQPRFRSMWERYCRGVNAIVYMVDAADLDKLEASRNELHSLLDK 117

May play a role in lysosome motility (PubMed:16537643). Essential role in chromosome segregation (PubMed:15331635).
Drosophila melanogaster (taxid: 7227)

>sp|Q6NZW8|AR8BA_DANRE ADP-ribosylation factor-like protein 8B-A OS=Danio rerio GN=arl8ba PE=2 SV=1

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 65/113 (57%), Positives = 74/113 (65%), Gaps = 29/113 (25%)

Query: 1   MELTLSG-QFSQDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGN 59
           MELTL G Q+S                G  T   V  SGQFS+DMIPTVGFNMRK+TKGN
Sbjct: 21  MELTLVGLQYS----------------GKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGN 64

Query: 60  VTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNELHALIEK 100
           VTIK+WDIGGQPRFRS            +YMVDAAD +K+EASRNELH L++K
Sbjct: 65  VTIKIWDIGGQPRFRSMWERYCRGVNAIVYMVDAADREKVEASRNELHNLLDK 117

May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation.

Danio rerio (taxid: 7955)

>sp|Q66HA6|ARL8B_RAT ADP-ribosylation factor-like protein 8B OS=Rattus norvegicus GN=Arl8b PE=2 SV=1

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 64/113 (56%), Positives = 74/113 (65%), Gaps = 29/113 (25%)

Query: 1   MELTLSG-QFSQDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGN 59
           MELTL G Q+S                G  T   V  SGQFS+DMIPTVGFNMRK+TKGN
Sbjct: 21  MELTLVGLQYS----------------GKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGN 64

Query: 60  VTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNELHALIEK 100
           VTIK+WDIGGQPRFRS            +YM+DAAD +K+EASRNELH L++K
Sbjct: 65  VTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDK 117

May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation.

Rattus norvegicus (taxid: 10116)

>sp|Q9CQW2|ARL8B_MOUSE ADP-ribosylation factor-like protein 8B OS=Mus musculus GN=Arl8b PE=2 SV=1

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 64/113 (56%), Positives = 74/113 (65%), Gaps = 29/113 (25%)

Query: 1   MELTLSG-QFSQDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGN 59
           MELTL G Q+S                G  T   V  SGQFS+DMIPTVGFNMRK+TKGN
Sbjct: 21  MELTLVGLQYS----------------GKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGN 64

Query: 60  VTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNELHALIEK 100
           VTIK+WDIGGQPRFRS            +YM+DAAD +K+EASRNELH L++K
Sbjct: 65  VTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDK 117

May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation.

Mus musculus (taxid: 10090)

>sp|Q9NVJ2|ARL8B_HUMAN ADP-ribosylation factor-like protein 8B OS=Homo sapiens GN=ARL8B PE=1 SV=1

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 64/113 (56%), Positives = 74/113 (65%), Gaps = 29/113 (25%)

Query: 1   MELTLSG-QFSQDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGN 59
           MELTL G Q+S                G  T   V  SGQFS+DMIPTVGFNMRK+TKGN
Sbjct: 21  MELTLVGLQYS----------------GKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGN 64

Query: 60  VTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNELHALIEK 100
           VTIK+WDIGGQPRFRS            +YM+DAAD +K+EASRNELH L++K
Sbjct: 65  VTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDK 117

May play a role in lysosome motility (PubMed:16537643). May play a role in chromosome segregation (PubMed:15331635).

Homo sapiens (taxid: 9606)

>sp|Q6P8C8|ARL8A_XENTR ADP-ribosylation factor-like protein 8A OS=Xenopus tropicalis GN=arl8a PE=2 SV=1

 Score =  116 bits (291), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 65/113 (57%), Positives = 74/113 (65%), Gaps = 29/113 (25%)

Query: 1   MELTLSG-QFSQDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGN 59
           MELTL G Q+S                G  T   V  SGQF++DMIPTVGFNMRKITKGN
Sbjct: 21  MELTLVGLQYS----------------GKTTFVNVIASGQFNEDMIPTVGFNMRKITKGN 64

Query: 60  VTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNELHALIEK 100
           VTIK+WDIGGQPRFRS            +YMVDAAD DK+EAS+NELH L++K
Sbjct: 65  VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQDKIEASKNELHNLLDK 117

May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation.

Xenopus tropicalis (taxid: 8364)

>sp|Q4R4S4|ARL8B_MACFA ADP-ribosylation factor-like protein 8B OS=Macaca fascicularis GN=ARL8B PE=2 SV=1

 Score =  115 bits (289), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 63/113 (55%), Positives = 74/113 (65%), Gaps = 29/113 (25%)

Query: 1   MELTLSG-QFSQDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGN 59
           MELTL G Q+S                G  T   V  SGQFS+DMIPTVGFNMRK+TKGN
Sbjct: 21  MELTLVGLQYS----------------GKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGN 64

Query: 60  VTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNELHALIEK 100
           VTIK+WDIGGQPR+RS            +YM+DAAD +K+EASRNELH L++K
Sbjct: 65  VTIKIWDIGGQPRYRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDK 117

May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation.

Macaca fascicularis (taxid: 9541)

>sp|Q8VEH3|ARL8A_MOUSE ADP-ribosylation factor-like protein 8A OS=Mus musculus GN=Arl8a PE=2 SV=1

 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 64/113 (56%), Positives = 74/113 (65%), Gaps = 29/113 (25%)

Query: 1   MELTLSG-QFSQDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGN 59
           MELTL G Q+S                G  T   V  SGQF++DMIPTVGFNMRKITKGN
Sbjct: 21  MELTLVGLQYS----------------GKTTFVNVIASGQFNEDMIPTVGFNMRKITKGN 64

Query: 60  VTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNELHALIEK 100
           VTIK+WDIGGQPRFRS            +YMVDAAD +K+EAS+NELH L++K
Sbjct: 65  VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK 117

May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation.

Mus musculus (taxid: 10090)

>sp|Q2KI07|ARL8B_BOVIN ADP-ribosylation factor-like protein 8B OS=Bos taurus GN=ARL8B PE=2 SV=1

 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/113 (55%), Positives = 74/113 (65%), Gaps = 29/113 (25%)

Query: 1   MELTLSG-QFSQDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGN 59
           MELTL G Q+S                G  T   V  SGQFS+DMIPTVGFNMRK+TKGN
Sbjct: 21  MELTLVGLQYS----------------GKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGN 64

Query: 60  VTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNELHALIEK 100
           VTIK+WDIGGQPRF+S            +YM+DAAD +K+EASRNELH L++K
Sbjct: 65  VTIKIWDIGGQPRFQSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDK 117

May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation.

Bos taurus (taxid: 9913)

>sp|Q5ZKQ8|ARL8A_CHICK ADP-ribosylation factor-like protein 8A OS=Gallus gallus GN=ARL8A PE=2 SV=1

 Score =  114 bits (286), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 64/113 (56%), Positives = 74/113 (65%), Gaps = 29/113 (25%)

Query: 1   MELTLSG-QFSQDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGN 59
           MELTL G Q+S                G  T   V  SGQF++DMIPTVGFNMRKITKGN
Sbjct: 21  MELTLVGLQYS----------------GKTTFVNVIASGQFNEDMIPTVGFNMRKITKGN 64

Query: 60  VTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNELHALIEK 100
           VTIK+WDIGGQPRFRS            +YMVDAAD +K+EAS+NELH L++K
Sbjct: 65  VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK 117

May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
114051594	187	ADP-ribosylation factor-like protein [Bo	0.831	0.449	0.601	3e-26
195453767	186	GK14379 [Drosophila willistoni] gi|19417	0.831	0.451	0.610	4e-26
195108875	186	GI23307 [Drosophila mojavensis] gi|19391	0.831	0.451	0.610	4e-26
195330792	256	GM23705 [Drosophila sechellia] gi|194121	0.831	0.328	0.601	4e-26
21355085	186	GTPase indispensable for equal segregati	0.831	0.451	0.601	7e-26
125774813	186	GA20665 [Drosophila pseudoobscura pseudo	0.831	0.451	0.601	7e-26
328712016	189	PREDICTED: ADP-ribosylation factor-like	0.752	0.402	0.681	9e-26
379698853	189	ADP-ribosylation factor-like 8B-like [Ga	0.831	0.444	0.584	1e-25
345307224	155	PREDICTED: ADP-ribosylation factor-like	0.643	0.419	0.740	2e-25
170060995	186	ADP-ribosylation factor [Culex quinquefa	0.831	0.451	0.584	2e-25

>gi|114051594|ref|NP_001040168.1| ADP-ribosylation factor-like protein [Bombyx mori] gi|87248265|gb|ABD36185.1| ADP-ribosylation factor-like protein [Bombyx mori]

 Score =  122 bits (305), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 68/113 (60%), Positives = 75/113 (66%), Gaps = 29/113 (25%)

Query: 1   MELTLSG-QFSQDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGN 59
           MELTL G Q+S                G  T   V  SGQFS+DMIPTVGFNMRK+TKGN
Sbjct: 21  MELTLVGLQYS----------------GKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGN 64

Query: 60  VTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNELHALIEK 100
           VTIKVWDIGGQPRFRS            +YMVDAAD DK+EASRNELH+L+EK
Sbjct: 65  VTIKVWDIGGQPRFRSMWERYCRGVNAIVYMVDAADPDKIEASRNELHSLLEK 117

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195453767|ref|XP_002073933.1| GK14379 [Drosophila willistoni] gi|194170018|gb|EDW84919.1| GK14379 [Drosophila willistoni]

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 69/113 (61%), Positives = 75/113 (66%), Gaps = 29/113 (25%)

Query: 1   MELTLSG-QFSQDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGN 59
           MELTL G QFS                G  T   V  SGQF++DMIPTVGFNMRKITKGN
Sbjct: 21  MELTLVGLQFS----------------GKTTFVNVIASGQFAEDMIPTVGFNMRKITKGN 64

Query: 60  VTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNELHALIEK 100
           VTIKVWDIGGQPRFRS            +YMVDAAD DKLEASRNELH+L++K
Sbjct: 65  VTIKVWDIGGQPRFRSMWERYCRGVNAIVYMVDAADLDKLEASRNELHSLLDK 117

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195108875|ref|XP_001999018.1| GI23307 [Drosophila mojavensis] gi|193915612|gb|EDW14479.1| GI23307 [Drosophila mojavensis]

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 69/113 (61%), Positives = 75/113 (66%), Gaps = 29/113 (25%)

Query: 1   MELTLSG-QFSQDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGN 59
           MELTL G QFS                G  T   V  SGQF++DMIPTVGFNMRKITKGN
Sbjct: 21  MELTLVGLQFS----------------GKTTFVNVIASGQFAEDMIPTVGFNMRKITKGN 64

Query: 60  VTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNELHALIEK 100
           VTIKVWDIGGQPRFRS            +YMVDAAD DKLEASRNELH+L++K
Sbjct: 65  VTIKVWDIGGQPRFRSMWERYCRGVNAIVYMVDAADLDKLEASRNELHSLLDK 117

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195330792|ref|XP_002032087.1| GM23705 [Drosophila sechellia] gi|194121030|gb|EDW43073.1| GM23705 [Drosophila sechellia]

 Score =  121 bits (304), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 68/113 (60%), Positives = 75/113 (66%), Gaps = 29/113 (25%)

Query: 1   MELTLSG-QFSQDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGN 59
           MELTL G QFS                G  T   V  SGQF++DMIPTVGFNMRKIT+GN
Sbjct: 21  MELTLVGLQFS----------------GKTTFVNVIASGQFAEDMIPTVGFNMRKITRGN 64

Query: 60  VTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNELHALIEK 100
           VTIKVWDIGGQPRFRS            +YMVDAAD DKLEASRNELH+L++K
Sbjct: 65  VTIKVWDIGGQPRFRSMWERYCRGVNAIVYMVDAADLDKLEASRNELHSLLDK 117

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|21355085|ref|NP_649769.1| GTPase indispensable for equal segregation of chromosomes [Drosophila melanogaster] gi|194904149|ref|XP_001981010.1| GG23372 [Drosophila erecta] gi|195498997|ref|XP_002096761.1| GE25851 [Drosophila yakuba] gi|195572647|ref|XP_002104307.1| GD18515 [Drosophila simulans] gi|75026983|sp|Q9VHV5.1|ARL8_DROME RecName: Full=ADP-ribosylation factor-like protein 8; AltName: Full=Novel small G protein indispensable for equal chromosome segregation; Short=dGie gi|7298991|gb|AAF54194.1| GTPase indispensable for equal segregation of chromosomes [Drosophila melanogaster] gi|20151605|gb|AAM11162.1| LD29185p [Drosophila melanogaster] gi|50508069|dbj|BAD30092.1| novel small G protein indispensable for equal chromosome segregation [Drosophila melanogaster] gi|190652713|gb|EDV49968.1| GG23372 [Drosophila erecta] gi|194182862|gb|EDW96473.1| GE25851 [Drosophila yakuba] gi|194200234|gb|EDX13810.1| GD18515 [Drosophila simulans] gi|220944256|gb|ACL84671.1| CG7891-PA [synthetic construct]

 Score =  121 bits (303), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 68/113 (60%), Positives = 75/113 (66%), Gaps = 29/113 (25%)

Query: 1   MELTLSG-QFSQDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGN 59
           MELTL G QFS                G  T   V  SGQF++DMIPTVGFNMRKIT+GN
Sbjct: 21  MELTLVGLQFS----------------GKTTFVNVIASGQFAEDMIPTVGFNMRKITRGN 64

Query: 60  VTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNELHALIEK 100
           VTIKVWDIGGQPRFRS            +YMVDAAD DKLEASRNELH+L++K
Sbjct: 65  VTIKVWDIGGQPRFRSMWERYCRGVNAIVYMVDAADLDKLEASRNELHSLLDK 117

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125774813|ref|XP_001358658.1| GA20665 [Drosophila pseudoobscura pseudoobscura] gi|194746245|ref|XP_001955591.1| GF18845 [Drosophila ananassae] gi|195145356|ref|XP_002013662.1| GL24258 [Drosophila persimilis] gi|54638397|gb|EAL27799.1| GA20665 [Drosophila pseudoobscura pseudoobscura] gi|190628628|gb|EDV44152.1| GF18845 [Drosophila ananassae] gi|194102605|gb|EDW24648.1| GL24258 [Drosophila persimilis]

 Score =  120 bits (302), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 68/113 (60%), Positives = 75/113 (66%), Gaps = 29/113 (25%)

Query: 1   MELTLSG-QFSQDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGN 59
           MELTL G QFS                G  T   V  SGQF++DMIPTVGFNMRKIT+GN
Sbjct: 21  MELTLVGLQFS----------------GKTTFVNVIASGQFAEDMIPTVGFNMRKITRGN 64

Query: 60  VTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNELHALIEK 100
           VTIKVWDIGGQPRFRS            +YMVDAAD DKLEASRNELH+L++K
Sbjct: 65  VTIKVWDIGGQPRFRSMWERYCRGVNAIVYMVDAADLDKLEASRNELHSLLDK 117

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328712016|ref|XP_003244709.1| PREDICTED: ADP-ribosylation factor-like protein 8B-A-like [Acyrthosiphon pisum]

 Score =  120 bits (301), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 60/88 (68%), Positives = 65/88 (73%), Gaps = 12/88 (13%)

Query: 25  TKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS--------- 75
             G  T   V  SGQF+QDMIPTVGFNMRK+TK NVTIK+WDIGGQPRFRS         
Sbjct: 30  CSGKTTFVHVIASGQFNQDMIPTVGFNMRKVTKNNVTIKIWDIGGQPRFRSMWERYCRGV 89

Query: 76  ---IYMVDAADTDKLEASRNELHALIEK 100
              +YMVDAADTDKLEASRNELH LI+K
Sbjct: 90  NAIVYMVDAADTDKLEASRNELHNLIDK 117

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|379698853|ref|NP_001243899.1| ADP-ribosylation factor-like 8B-like [Gallus gallus] gi|53131232|emb|CAG31802.1| hypothetical protein RCJMB04_11g18 [Gallus gallus]

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/113 (58%), Positives = 76/113 (67%), Gaps = 29/113 (25%)

Query: 1   MELTLSG-QFSQDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGN 59
           MELTL G Q+S                G  T+  V  SGQF++DMIPTVGFNMRKITKGN
Sbjct: 43  MELTLVGLQYS----------------GKTTLLTVLASGQFTEDMIPTVGFNMRKITKGN 86

Query: 60  VTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNELHALIEK 100
           VTIKVWDIGGQPRFRS            +YMVDAAD +K+EAS+NELH+LI+K
Sbjct: 87  VTIKVWDIGGQPRFRSMWERYCRGVNAVVYMVDAADLEKVEASKNELHSLIDK 139

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|345307224|ref|XP_001507970.2| PREDICTED: ADP-ribosylation factor-like protein 8B-like [Ornithorhynchus anatinus]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 64/77 (83%), Gaps = 12/77 (15%)

Query: 36  LSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83
           LSGQF++DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS            +YMVDAAD
Sbjct: 8   LSGQFTEDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAVVYMVDAAD 67

Query: 84  TDKLEASRNELHALIEK 100
            +KLEAS+NELH+L+EK
Sbjct: 68  IEKLEASKNELHSLVEK 84

Source: Ornithorhynchus anatinus

Species: Ornithorhynchus anatinus

Genus: Ornithorhynchus

Family: Ornithorhynchidae

Order: Monotremata

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|170060995|ref|XP_001866047.1| ADP-ribosylation factor [Culex quinquefasciatus] gi|167879284|gb|EDS42667.1| ADP-ribosylation factor [Culex quinquefasciatus]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/113 (58%), Positives = 74/113 (65%), Gaps = 29/113 (25%)

Query: 1   MELTLSG-QFSQDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGN 59
           MELTL G Q+S                G  T   V  SGQF +DMIPTVGFNMRK+TKGN
Sbjct: 21  MELTLVGLQYS----------------GKTTFVNVIASGQFCEDMIPTVGFNMRKVTKGN 64

Query: 60  VTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNELHALIEK 100
           VTIKVWDIGGQPRFRS            +YMVDAAD DK+EASRNELH+L++K
Sbjct: 65  VTIKVWDIGGQPRFRSMWERYCRGVNAIVYMVDAADLDKMEASRNELHSLLDK 117

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
FB|FBgn0037551	186	Gie "GTPase indispensable for	0.732	0.397	0.686	1.2e-24
UNIPROTKB|E1BR92	189	E1BR92 "Uncharacterized protei	0.732	0.391	0.674	1.6e-24
UNIPROTKB|F1NSA1	189	F1NSA1 "Uncharacterized protei	0.732	0.391	0.674	1.6e-24
UNIPROTKB|F1P0Z7	186	ARL8B "Uncharacterized protein	0.732	0.397	0.662	4.2e-24
UNIPROTKB|F2Z4I5	186	ARL8B "ADP-ribosylation factor	0.732	0.397	0.651	5.3e-24
UNIPROTKB|E2RE13	186	ARL8B "Uncharacterized protein	0.732	0.397	0.651	5.3e-24
UNIPROTKB|B4DI85	163	ARL8B "ADP-ribosylation factor	0.732	0.453	0.651	5.3e-24
UNIPROTKB|Q9NVJ2	186	ARL8B "ADP-ribosylation factor	0.732	0.397	0.651	5.3e-24
UNIPROTKB|F1SFL1	191	ARL8B "Uncharacterized protein	0.732	0.387	0.651	5.3e-24
MGI|MGI:1914416	186	Arl8b "ADP-ribosylation factor	0.732	0.397	0.651	5.3e-24

FB|FBgn0037551 Gie "GTPase indispensable for equal segregation of chromosomes" [Drosophila melanogaster (taxid:7227)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 59/86 (68%), Positives = 66/86 (76%)

Query:    27 GNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS----------- 75
             G  T   V  SGQF++DMIPTVGFNMRKIT+GNVTIKVWDIGGQPRFRS           
Sbjct:    32 GKTTFVNVIASGQFAEDMIPTVGFNMRKITRGNVTIKVWDIGGQPRFRSMWERYCRGVNA 91

Query:    76 -IYMVDAADTDKLEASRNELHALIEK 100
              +YMVDAAD DKLEASRNELH+L++K
Sbjct:    92 IVYMVDAADLDKLEASRNELHSLLDK 117

GO:0005525 "GTP binding" evidence=ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0000819 "sister chromatid segregation" evidence=IMP

GO:0005764 "lysosome" evidence=IDA

UNIPROTKB|E1BR92 E1BR92 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 58/86 (67%), Positives = 67/86 (77%)

Query:    27 GNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS----------- 75
             G  T+  V  SGQF++DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS           
Sbjct:    54 GKTTLLTVLASGQFTEDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNA 113

Query:    76 -IYMVDAADTDKLEASRNELHALIEK 100
              +YMVDAAD +K+EAS+NELH+LI+K
Sbjct:   114 VVYMVDAADLEKVEASKNELHSLIDK 139

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|F1NSA1 F1NSA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 58/86 (67%), Positives = 67/86 (77%)

Query:    27 GNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS----------- 75
             G  T+  V  SGQF++DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS           
Sbjct:    54 GKTTLLTVLASGQFTEDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNA 113

Query:    76 -IYMVDAADTDKLEASRNELHALIEK 100
              +YMVDAAD +K+EAS+NELH+LI+K
Sbjct:   114 VVYMVDAADLEKVEASKNELHSLIDK 139

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|F1P0Z7 ARL8B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 57/86 (66%), Positives = 65/86 (75%)

Query:    27 GNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS----------- 75
             G  T   V  SGQFS+DMIPTVGFNMRK+TKGNVTIK+WDIGGQPRFRS           
Sbjct:    32 GKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNA 91

Query:    76 -IYMVDAADTDKLEASRNELHALIEK 100
              +YMVDAAD +K+EASRNELH L++K
Sbjct:    92 IVYMVDAADREKIEASRNELHNLLDK 117

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0019003 "GDP binding" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0043014 "alpha-tubulin binding" evidence=IEA

GO:0048487 "beta-tubulin binding" evidence=IEA

GO:0051233 "spindle midzone" evidence=IEA

UNIPROTKB|F2Z4I5 ARL8B "ADP-ribosylation factor-like protein 8B" [Bos taurus (taxid:9913)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 56/86 (65%), Positives = 65/86 (75%)

Query:    27 GNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS----------- 75
             G  T   V  SGQFS+DMIPTVGFNMRK+TKGNVTIK+WDIGGQPRFRS           
Sbjct:    32 GKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNA 91

Query:    76 -IYMVDAADTDKLEASRNELHALIEK 100
              +YM+DAAD +K+EASRNELH L++K
Sbjct:    92 IVYMIDAADREKIEASRNELHNLLDK 117

GO:0051233 "spindle midzone" evidence=IEA

GO:0048487 "beta-tubulin binding" evidence=IEA

GO:0043014 "alpha-tubulin binding" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0019003 "GDP binding" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|E2RE13 ARL8B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 56/86 (65%), Positives = 65/86 (75%)

Query:    27 GNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS----------- 75
             G  T   V  SGQFS+DMIPTVGFNMRK+TKGNVTIK+WDIGGQPRFRS           
Sbjct:    32 GKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNA 91

Query:    76 -IYMVDAADTDKLEASRNELHALIEK 100
              +YM+DAAD +K+EASRNELH L++K
Sbjct:    92 IVYMIDAADREKIEASRNELHNLLDK 117

GO:0051233 "spindle midzone" evidence=IEA

GO:0048487 "beta-tubulin binding" evidence=IEA

GO:0043014 "alpha-tubulin binding" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0019003 "GDP binding" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|B4DI85 ARL8B "ADP-ribosylation factor-like 8B, isoform CRA_a" [Homo sapiens (taxid:9606)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 56/86 (65%), Positives = 65/86 (75%)

Query:    27 GNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS----------- 75
             G  T   V  SGQFS+DMIPTVGFNMRK+TKGNVTIK+WDIGGQPRFRS           
Sbjct:    32 GKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNA 91

Query:    76 -IYMVDAADTDKLEASRNELHALIEK 100
              +YM+DAAD +K+EASRNELH L++K
Sbjct:    92 IVYMIDAADREKIEASRNELHNLLDK 117

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|Q9NVJ2 ARL8B "ADP-ribosylation factor-like protein 8B" [Homo sapiens (taxid:9606)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 56/86 (65%), Positives = 65/86 (75%)

Query:    27 GNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS----------- 75
             G  T   V  SGQFS+DMIPTVGFNMRK+TKGNVTIK+WDIGGQPRFRS           
Sbjct:    32 GKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNA 91

Query:    76 -IYMVDAADTDKLEASRNELHALIEK 100
              +YM+DAAD +K+EASRNELH L++K
Sbjct:    92 IVYMIDAADREKIEASRNELHNLLDK 117

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

GO:0003924 "GTPase activity" evidence=NAS

GO:0005525 "GTP binding" evidence=IDA

GO:0019003 "GDP binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0051233 "spindle midzone" evidence=IDA

GO:0030496 "midbody" evidence=IDA

GO:0043014 "alpha-tubulin binding" evidence=IDA

GO:0048487 "beta-tubulin binding" evidence=IDA

GO:0007059 "chromosome segregation" evidence=IMP

GO:0006184 "GTP catabolic process" evidence=NAS

UNIPROTKB|F1SFL1 ARL8B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 56/86 (65%), Positives = 65/86 (75%)

Query:    27 GNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS----------- 75
             G  T   V  SGQFS+DMIPTVGFNMRK+TKGNVTIK+WDIGGQPRFRS           
Sbjct:    90 GKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNA 149

Query:    76 -IYMVDAADTDKLEASRNELHALIEK 100
              +YM+DAAD +K+EASRNELH L++K
Sbjct:   150 IVYMIDAADREKIEASRNELHNLLDK 175

GO:0051233 "spindle midzone" evidence=IEA

GO:0048487 "beta-tubulin binding" evidence=IEA

GO:0043014 "alpha-tubulin binding" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0019003 "GDP binding" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

MGI|MGI:1914416 Arl8b "ADP-ribosylation factor-like 8B" [Mus musculus (taxid:10090)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 56/86 (65%), Positives = 65/86 (75%)

Query:    27 GNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS----------- 75
             G  T   V  SGQFS+DMIPTVGFNMRK+TKGNVTIK+WDIGGQPRFRS           
Sbjct:    32 GKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNA 91

Query:    76 -IYMVDAADTDKLEASRNELHALIEK 100
              +YM+DAAD +K+EASRNELH L++K
Sbjct:    92 IVYMIDAADREKIEASRNELHNLLDK 117

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=ISO

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005764 "lysosome" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007059 "chromosome segregation" evidence=ISO

GO:0007067 "mitosis" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0019003 "GDP binding" evidence=ISO

GO:0030496 "midbody" evidence=ISO

GO:0043014 "alpha-tubulin binding" evidence=ISO

GO:0048487 "beta-tubulin binding" evidence=ISO

GO:0051233 "spindle midzone" evidence=ISO

GO:0051301 "cell division" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VHV5	ARL8_DROME	No assigned EC number	0.6017	0.8316	0.4516	yes	N/A
Q5R6E7	ARL8B_PONAB	No assigned EC number	0.5575	0.8316	0.4516	yes	N/A
Q9NVJ2	ARL8B_HUMAN	No assigned EC number	0.5663	0.8316	0.4516	yes	N/A
Q6NZW8	AR8BA_DANRE	No assigned EC number	0.5752	0.8316	0.4516	yes	N/A
Q9CQW2	ARL8B_MOUSE	No assigned EC number	0.5663	0.8316	0.4516	yes	N/A
Q54R04	ARL8_DICDI	No assigned EC number	0.5116	0.7326	0.4	yes	N/A
Q66HA6	ARL8B_RAT	No assigned EC number	0.5663	0.8316	0.4516	yes	N/A
Q2KI07	ARL8B_BOVIN	No assigned EC number	0.5575	0.8316	0.4516	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	101
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	8e-37
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	6e-21
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	9e-17
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	2e-14
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	4e-14
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	2e-11
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	2e-11
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	2e-11
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	8e-11
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	1e-10
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	2e-10
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	2e-10
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	3e-10
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	1e-09
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	2e-09
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	2e-09
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	2e-09
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	3e-08
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	1e-07
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	3e-07
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	2e-06
cd04161	167	cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A	3e-06
pfam00071	162	pfam00071, Ras, Ras family	1e-05
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	6e-05
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	8e-05
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	1e-04
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	2e-04
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	2e-04
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	0.001
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	0.001
smart00178	184	smart00178, SAR, Sar1p-like members of the Ras-fam	0.001
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	0.001
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	0.002
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	0.002
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	0.002
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	0.003

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score =  121 bits (305), Expect = 8e-37
 Identities = 51/76 (67%), Positives = 60/76 (78%), Gaps = 12/76 (15%)

Query: 37  SGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84
           SGQFS+D IPTVGFNMRK+TKGNVTIKVWD+GGQPRFRS            +Y+VDAAD 
Sbjct: 21  SGQFSEDTIPTVGFNMRKVTKGNVTIKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADR 80

Query: 85  DKLEASRNELHALIEK 100
           +KLE ++NELH L+EK
Sbjct: 81  EKLEVAKNELHDLLEK 96

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 81.1 bits (201), Expect = 6e-21
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 12/76 (15%)

Query: 36 LSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83
          L        IPT+GFN+  +   NV   VWD+GGQ + R             I++VD++D
Sbjct: 19 LKLGEVVTTIPTIGFNVETVEYKNVKFTVWDVGGQDKIRPLWKHYYENTDGLIFVVDSSD 78

Query: 84 TDKLEASRNELHALIE 99
           +++E ++NELH L+ 
Sbjct: 79 RERIEEAKNELHKLLN 94

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 70.7 bits (174), Expect = 9e-17
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 12/68 (17%)

Query: 44  MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASR 91
            IPT+GFN+  +T  NV   VWD+GGQ   R             I++VD+AD D++E ++
Sbjct: 42  TIPTIGFNVETVTYKNVKFTVWDVGGQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAK 101

Query: 92  NELHALIE 99
            ELHAL+ 
Sbjct: 102 EELHALLN 109

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 64.0 bits (156), Expect = 2e-14
 Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 12/67 (17%)

Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQ----PRFRS--------IYMVDAADTDKLEASRN 92
          IPT+GFN+  +T  N+  +VWD+GGQ    P +R         IY+VD+ D D+L  S++
Sbjct: 28 IPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGISKS 87

Query: 93 ELHALIE 99
          ELHA++E
Sbjct: 88 ELHAMLE 94

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 63.6 bits (155), Expect = 4e-14
 Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 12/66 (18%)

Query: 45  IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
           IPTVGFN+  +T  NV   VWD+GGQ + R             I++VD+AD D+++ +R 
Sbjct: 38  IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQ 97

Query: 93  ELHALI 98
           ELH +I
Sbjct: 98  ELHRII 103

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 56.9 bits (137), Expect = 2e-11
 Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 12/66 (18%)

Query: 45  IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
           IPT+GFN+  +T  N++  VWD+GGQ + R             I++VD+ D D+++ +R 
Sbjct: 42  IPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEARE 101

Query: 93  ELHALI 98
           ELH ++
Sbjct: 102 ELHRML 107

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 56.6 bits (137), Expect = 2e-11
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 12/76 (15%)

Query: 36  LSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83
           L+ +    + PT GFN++ +      + VWDIGGQ + R             IY++D+AD
Sbjct: 35  LASEDISHITPTQGFNIKNVQADGFKLNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSAD 94

Query: 84  TDKLEASRNELHALIE 99
             + E +  EL  L+E
Sbjct: 95  RKRFEEAGQELVELLE 110

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 56.3 bits (136), Expect = 2e-11
 Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 12/66 (18%)

Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
          IPT+GFN+  +   N++  VWD+GGQ + R             I++VD+ D +++  +R 
Sbjct: 29 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEARE 88

Query: 93 ELHALI 98
          EL  ++
Sbjct: 89 ELQRML 94

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 55.4 bits (134), Expect = 8e-11
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 14/72 (19%)

Query: 44  MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASR 91
            +PT+     ++T GNV    +D+GG  + R             +++VDAAD ++ + S+
Sbjct: 47  HVPTLHPTSEELTIGNVKFTTFDLGGHEQARRVWKDYFPEVDGIVFLVDAADPERFQESK 106

Query: 92  NELHAL--IEKL 101
            EL +L   E+L
Sbjct: 107 EELDSLLNDEEL 118

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 54.6 bits (131), Expect = 1e-10
 Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 12/68 (17%)

Query: 45  IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
           IPT+GFN+  +   N++  VWD+GGQ + R             I++VD+ D D++  +R+
Sbjct: 46  IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD 105

Query: 93  ELHALIEK 100
           ELH ++ +
Sbjct: 106 ELHRMLNE 113

Length = 181

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 54.0 bits (130), Expect = 2e-10
 Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 13/78 (16%)

Query: 36  LSGQFSQD-MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82
           LS + S + ++PT GFN   I   +  +++ +IGG    R             I++VD+A
Sbjct: 19  LSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSA 78

Query: 83  DTDKLEASRNELHALIEK 100
           D+++L  +R ELH L++ 
Sbjct: 79  DSERLPLARQELHQLLQH 96

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 53.9 bits (130), Expect = 2e-10
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 12/65 (18%)

Query: 46  PTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNE 93
           PTVG N+  I  G   +  WD+GGQ   RS            IY++D+ D ++   S++ 
Sbjct: 37  PTVGLNIGTIEVGKARLMFWDLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSA 96

Query: 94  LHALI 98
              +I
Sbjct: 97  FEKVI 101

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 53.7 bits (129), Expect = 3e-10
 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 17/68 (25%)

Query: 45 IPTVGFNMRKI--TKGN---VTIKVWDIGGQPRFRS------------IYMVDAADTDKL 87
          +PT GFN  KI  + GN   VT   WD+GGQ + R             +++VD+ D +++
Sbjct: 32 VPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERM 91

Query: 88 EASRNELH 95
          E ++ ELH
Sbjct: 92 EEAKTELH 99

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 52.0 bits (125), Expect = 1e-09
 Identities = 22/63 (34%), Positives = 39/63 (61%), Gaps = 13/63 (20%)

Query: 45 IPTVGFNMRKI-TKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASR 91
          IPTVGFN+  +  + ++++ VWD+GGQ + R+            +Y+VD++D  +L+ S+
Sbjct: 28 IPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQ 87

Query: 92 NEL 94
           EL
Sbjct: 88 KEL 90

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 51.3 bits (123), Expect = 2e-09
 Identities = 21/71 (29%), Positives = 42/71 (59%), Gaps = 12/71 (16%)

Query: 41 SQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLE 88
          SQ+++PTVGFN+    KGN++   +D+ GQ ++R             I+++D++D  ++ 
Sbjct: 26 SQNIVPTVGFNVESFKKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRMV 85

Query: 89 ASRNELHALIE 99
           +++EL  L+ 
Sbjct: 86 VAKDELELLLN 96

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 51.6 bits (124), Expect = 2e-09
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 14/70 (20%)

Query: 46  PTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNE 93
           PT+GFN++ +      + +WD+GGQ   RS            I++VD++D  +LE  + E
Sbjct: 44  PTLGFNIKTLEYNGYKLNIWDVGGQKSLRSYWRNYFESTDALIWVVDSSDRARLEDCKRE 103

Query: 94  LHALI--EKL 101
           L  L+  E+L
Sbjct: 104 LQKLLVEERL 113

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 51.8 bits (124), Expect = 2e-09
 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 12/66 (18%)

Query: 45  IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
           IPT+GFN+  +   N+   +WD+GGQ + R             I++VD+ D +++  +R 
Sbjct: 46  IPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDARE 105

Query: 93  ELHALI 98
           EL  ++
Sbjct: 106 ELERML 111

Length = 182

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 48.5 bits (116), Expect = 3e-08
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 12/65 (18%)

Query: 46  PTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNE 93
           PT+G N+ +I   N+   +WDIGGQ   RS            I ++D+ D ++L  ++ E
Sbjct: 45  PTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEE 104

Query: 94  LHALI 98
           L+ ++
Sbjct: 105 LYKML 109

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 46.3 bits (111), Expect = 1e-07
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 4/43 (9%)

Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
           +FS++   T+G  F  + I      +K  +WD  GQ RFRSI
Sbjct: 23 NKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQERFRSI 65

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score = 45.2 bits (108), Expect = 3e-07
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)

Query: 37 SGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
           G+FS+    T+G  F  + I      +K  +WD  GQ RFRSI
Sbjct: 22 DGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSI 65

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 43.5 bits (102), Expect = 2e-06
 Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 12/66 (18%)

Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
          IPT+GFN+  +   N+   +WD+GG+ + R             ++++D++  D++  + +
Sbjct: 28 IPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVIDSSHRDRVSEAHS 87

Query: 93 ELHALI 98
          EL  L+
Sbjct: 88 ELAKLL 93

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13

 Score = 42.8 bits (101), Expect = 3e-06
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 12/74 (16%)

Query: 36 LSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSI------------YMVDAAD 83
          L G+  + + PTVGF   K+      + ++D+GG   FR I            ++VD++D
Sbjct: 19 LQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSD 78

Query: 84 TDKLEASRNELHAL 97
           D+++  +  L  L
Sbjct: 79 DDRVQEVKEILREL 92

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 7/51 (13%)

Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI---YMVDA 81
           +F ++ IPT+G  F  + I     T+K  +WD  GQ RFR++   Y   A
Sbjct: 22 NKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQERFRALRPLYYRGA 72

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 39.2 bits (92), Expect = 6e-05
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 19/77 (24%)

Query: 37 SGQFSQDMIPTVG--FNMRKITKGNVTIKV--WDIGGQPRFRS--------------IYM 78
             F +D+  T+G  F ++ +T     +K+  WD  GQ RFR+              +Y 
Sbjct: 22 DDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYD 81

Query: 79 VDAADT-DKLEASRNEL 94
          V   DT D L+   NEL
Sbjct: 82 VTRRDTFDNLDTWLNEL 98

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 38.8 bits (91), Expect = 8e-05
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
            F+   I T+G  F +R I      IK  +WD  GQ RFR+I
Sbjct: 26 DSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTI 68

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 7/54 (12%)

Query: 36 LSGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI---YMVDAA 82
          +  +F QD   T+G  F  R +  G  ++K  +WD  GQ RFRS+   Y   AA
Sbjct: 21 IENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQERFRSVTRSYYRGAA 74

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)

Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
           +F+ D   T+G  F  R I     TIK  +WD  GQ R+R+I
Sbjct: 26 NEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAGQERYRAI 68

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 4/43 (9%)

Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
           +FS++   T+G  F  + +   + T+K  +WD  GQ R+RS+
Sbjct: 24 NEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSL 66

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 35.9 bits (83), Expect = 0.001
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 4/44 (9%)

Query: 37 SGQFSQDMIPTVG--FNMR--KITKGNVTIKVWDIGGQPRFRSI 76
          SG FS+    T+G  F M+  +I    V +++WD  GQ RFR+I
Sbjct: 25 SGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTI 68

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 35.8 bits (83), Expect = 0.001
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 4/41 (9%)

Query: 40 FSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
          +++  I T+G  F +R I     T+K  +WD  GQ RFR+I
Sbjct: 27 YTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERFRTI 67

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases

 Score = 35.7 bits (82), Expect = 0.001
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 12/67 (17%)

Query: 44  MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASR 91
             PT      ++  GN+    +D+GG  + R             +Y+VDA D ++   S+
Sbjct: 45  HQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESK 104

Query: 92  NELHALI 98
            EL AL+
Sbjct: 105 RELDALL 111

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 35.6 bits (82), Expect = 0.001
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 9/59 (15%)

Query: 27 GNVTIWPVPLSGQFSQDMIP-----TVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
          GN  +    L  +F+Q + P     T+G  F ++ +      IK  +WD  GQ RFRSI
Sbjct: 14 GNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSI 72

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 35.5 bits (82), Expect = 0.002
 Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 5/44 (11%)

Query: 38 GQFSQDMIPTVG--FNMRKI-TKGNVTIK--VWDIGGQPRFRSI 76
          G+F++   PTVG  F  R I  +  V IK  +WD  GQ RFRSI
Sbjct: 25 GRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSI 68

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 4/39 (10%)

Query: 42 QDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
          +D+ PT+G  F ++++T G   +K  +WD  GQ RFR++
Sbjct: 40 EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTL 78

Length = 211

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 35.1 bits (81), Expect = 0.002
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%)

Query: 36 LSGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQPRF---RSIYMVDA 81
          L+G+F +  IPT+G  +  +      G +   VWD  GQ +F   R  Y +  
Sbjct: 30 LTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKG 82

Length = 215

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 34.9 bits (80), Expect = 0.003
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 7/53 (13%)

Query: 36 LSGQFSQDMIPTVGFNMRKIT----KGNVTIKVWDIGGQPRFRSI---YMVDA 81
          +  +F +   PT+G      T    + N+ +++WD  GQ  +RS+   Y   A
Sbjct: 26 VGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGA 78

Length = 219

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	101
KOG0084|consensus	205		99.94
KOG0094|consensus	221		99.93
KOG0092|consensus	200		99.93
KOG0079|consensus	198		99.92
KOG0098|consensus	216		99.91
KOG0080|consensus	209		99.9
KOG0078|consensus	207		99.9
KOG0087|consensus	222		99.89
KOG0394|consensus	210		99.88
KOG0086|consensus	214		99.87
KOG0070|consensus	181		99.87
KOG0091|consensus	213		99.87
KOG0081|consensus	219		99.86
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.86
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.86
KOG0095|consensus	213		99.86
KOG0083|consensus	192		99.86
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.86
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.85
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.85
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.85
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.84
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.84
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.83
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.83
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.83
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.82
KOG0088|consensus	218		99.82
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.82
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.81
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.81
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.81
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.81
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.81
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.81
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.8
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.8
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.8
KOG0093|consensus	193		99.8
PTZ00369	189	Ras-like protein; Provisional	99.8
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.8
PLN00023	334	GTP-binding protein; Provisional	99.79
KOG0393|consensus	198		99.79
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.79
PLN00223	181	ADP-ribosylation factor; Provisional	99.79
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.79
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.79
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.79
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.79
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.79
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.79
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.79
PTZ00133	182	ADP-ribosylation factor; Provisional	99.78
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.78
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.78
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.78
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.78
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.78
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.78
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.78
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.78
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.78
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.77
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.77
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.77
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.77
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.77
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.77
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.77
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.76
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.76
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.76
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.76
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.76
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.76
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.76
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.75
PLN03110	216	Rab GTPase; Provisional	99.75
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.75
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.75
KOG0071|consensus	180		99.75
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.75
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.75
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.75
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.74
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.74
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.74
KOG0097|consensus	215		99.74
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.74
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.74
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.73
KOG0073|consensus	185		99.73
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.73
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.72
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.72
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.72
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.72
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.71
PLN03118	211	Rab family protein; Provisional	99.71
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.7
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.7
PLN03108	210	Rab family protein; Provisional	99.7
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.7
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.7
KOG0395|consensus	196		99.7
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.7
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.7
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.69
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.69
KOG0075|consensus	186		99.69
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.68
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.68
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.67
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.67
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.65
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.65
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.65
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.65
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.65
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.65
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.65
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.65
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.64
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.64
KOG1673|consensus	205		99.64
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.63
KOG4252|consensus	246		99.62
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.62
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.62
COG1100	219	GTPase SAR1 and related small G proteins [General	99.61
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.61
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.6
KOG0074|consensus	185		99.58
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.53
KOG0096|consensus	216		99.5
KOG0072|consensus	182		99.47
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.45
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.43
PTZ00099	176	rab6; Provisional	99.39
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.38
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.36
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.35
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.31
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.28
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.27
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.26
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.26
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.25
KOG0076|consensus	197		99.25
KOG4423|consensus	229		99.23
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.22
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.22
PRK12299	335	obgE GTPase CgtA; Reviewed	99.21
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.2
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.19
PRK15494	339	era GTPase Era; Provisional	99.15
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.13
KOG0077|consensus	193		99.13
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.09
PRK04213	201	GTP-binding protein; Provisional	99.08
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.07
PRK11058	426	GTPase HflX; Provisional	99.07
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.05
PRK03003	472	GTP-binding protein Der; Reviewed	99.03
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.0
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.0
PRK12297	424	obgE GTPase CgtA; Reviewed	98.99
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	98.99
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	98.99
KOG3883|consensus	198		98.98
PRK00093	435	GTP-binding protein Der; Reviewed	98.97
PRK03003	472	GTP-binding protein Der; Reviewed	98.94
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	98.93
cd01896	233	DRG The developmentally regulated GTP-binding prot	98.93
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	98.91
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	98.89
cd00881	189	GTP_translation_factor GTP translation factor fami	98.89
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	98.89
PRK05306	787	infB translation initiation factor IF-2; Validated	98.89
PF09439	181	SRPRB: Signal recognition particle receptor beta s	98.89
PRK12296	500	obgE GTPase CgtA; Reviewed	98.83
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	98.82
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	98.82
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	98.81
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	98.8
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.79
PRK04004	586	translation initiation factor IF-2; Validated	98.79
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	98.78
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	98.77
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	98.76
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	98.76
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	98.75
CHL00189	742	infB translation initiation factor 2; Provisional	98.74
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	98.74
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.73
PRK00089	292	era GTPase Era; Reviewed	98.73
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	98.7
COG2229	187	Predicted GTPase [General function prediction only	98.7
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	98.69
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	98.66
PRK13351	687	elongation factor G; Reviewed	98.66
PRK12298	390	obgE GTPase CgtA; Reviewed	98.65
PRK12317	425	elongation factor 1-alpha; Reviewed	98.61
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	98.61
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	98.61
COG0486	454	ThdF Predicted GTPase [General function prediction	98.6
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	98.59
PRK10218	607	GTP-binding protein; Provisional	98.57
PRK00093	435	GTP-binding protein Der; Reviewed	98.56
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	98.56
PRK15467	158	ethanolamine utilization protein EutP; Provisional	98.55
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	98.53
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	98.51
KOG1707|consensus	625		98.5
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	98.5
KOG0090|consensus	238		98.49
PRK05433	600	GTP-binding protein LepA; Provisional	98.49
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	98.46
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	98.45
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	98.45
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	98.4
COG1084	346	Predicted GTPase [General function prediction only	98.37
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	98.37
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	98.31
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	98.29
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	98.28
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.28
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	98.27
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.24
PRK09602	396	translation-associated GTPase; Reviewed	98.2
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	98.17
PRK00741	526	prfC peptide chain release factor 3; Provisional	98.16
COG3596	296	Predicted GTPase [General function prediction only	98.16
COG1159	298	Era GTPase [General function prediction only]	98.15
TIGR00485	394	EF-Tu translation elongation factor TU. This align	98.14
KOG3886|consensus	295		98.1
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	98.09
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	98.08
COG1160	444	Predicted GTPases [General function prediction onl	98.07
KOG1423|consensus	379		98.06
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	98.05
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	98.05
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	98.04
TIGR00503	527	prfC peptide chain release factor 3. This translat	98.03
KOG1489|consensus	366		98.03
PRK04000	411	translation initiation factor IF-2 subunit gamma;	98.02
KOG1191|consensus	531		98.01
PRK12740	668	elongation factor G; Reviewed	98.01
PLN03126	478	Elongation factor Tu; Provisional	97.94
COG1160	444	Predicted GTPases [General function prediction onl	97.94
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	97.93
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	97.92
KOG3905|consensus	473		97.9
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	97.88
COG1163	365	DRG Predicted GTPase [General function prediction	97.86
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	97.86
PRK12736	394	elongation factor Tu; Reviewed	97.82
KOG0705|consensus	749		97.81
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	97.8
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	97.8
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	97.8
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	97.8
PRK12735	396	elongation factor Tu; Reviewed	97.79
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.79
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	97.73
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	97.73
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	97.71
PLN00043	447	elongation factor 1-alpha; Provisional	97.7
PRK09563	287	rbgA GTPase YlqF; Reviewed	97.69
PRK12739	691	elongation factor G; Reviewed	97.57
CHL00071	409	tufA elongation factor Tu	97.57
KOG1707|consensus	625		97.56
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	97.55
PRK12288	347	GTPase RsgA; Reviewed	97.55
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	97.55
PTZ00258	390	GTP-binding protein; Provisional	97.53
COG0218	200	Predicted GTPase [General function prediction only	97.47
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	97.47
PTZ00141	446	elongation factor 1- alpha; Provisional	97.4
PRK12289	352	GTPase RsgA; Reviewed	97.4
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	97.39
COG1161	322	Predicted GTPases [General function prediction onl	97.38
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	97.36
PRK09601	364	GTP-binding protein YchF; Reviewed	97.35
PRK00049	396	elongation factor Tu; Reviewed	97.33
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	97.32
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	97.28
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	97.28
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	97.25
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	97.24
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	97.23
PLN03127	447	Elongation factor Tu; Provisional	97.23
COG5019	373	CDC3 Septin family protein [Cell division and chro	97.16
PRK00007	693	elongation factor G; Reviewed	97.16
COG1162	301	Predicted GTPases [General function prediction onl	97.12
KOG1424|consensus	562		97.09
PRK13796	365	GTPase YqeH; Provisional	97.09
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	96.98
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	96.91
COG0012	372	Predicted GTPase, probable translation factor [Tra	96.9
KOG3887|consensus	347		96.89
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	96.86
PRK00098	298	GTPase RsgA; Reviewed	96.81
COG2262	411	HflX GTPases [General function prediction only]	96.8
PRK14845	1049	translation initiation factor IF-2; Provisional	96.69
COG0536	369	Obg Predicted GTPase [General function prediction	96.64
KOG1486|consensus	364		96.6
KOG2655|consensus	366		96.55
KOG1491|consensus	391		96.52
PLN00116	843	translation elongation factor EF-2 subunit; Provis	96.45
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	96.33
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	96.29
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	96.14
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	96.09
KOG1490|consensus	620		96.06
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	96.05
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	95.96
PTZ00416	836	elongation factor 2; Provisional	95.92
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	95.86
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	95.85
TIGR00235	207	udk uridine kinase. Model contains a number of lon	95.81
KOG0075|consensus	186		95.78
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	95.74
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	95.72
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	95.69
KOG3859|consensus	406		95.66
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	95.62
PRK07560	731	elongation factor EF-2; Reviewed	95.6
PRK14738	206	gmk guanylate kinase; Provisional	95.56
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	95.55
PRK08118	167	topology modulation protein; Reviewed	95.53
PF02456	369	Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR	95.53
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	95.51
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	95.49
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	95.49
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	95.48
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	95.46
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	95.45
KOG1532|consensus	366		95.42
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	95.36
KOG1547|consensus	336		95.29
KOG4273|consensus	418		95.27
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	95.26
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	95.25
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	95.24
PRK06762	166	hypothetical protein; Provisional	95.2
PRK07261	171	topology modulation protein; Provisional	95.18
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	95.12
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	95.11
PF00004	132	AAA: ATPase family associated with various cellula	95.11
PF05729	166	NACHT: NACHT domain	95.11
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	95.11
smart00382	148	AAA ATPases associated with a variety of cellular	95.1
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	95.1
PRK04040	188	adenylate kinase; Provisional	95.1
KOG0462|consensus	650		95.06
COG1217	603	TypA Predicted membrane GTPase involved in stress	95.02
cd03116	159	MobB Molybdenum is an essential trace element in t	95.01
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	94.97
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	94.95
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	94.95
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	94.94
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	94.91
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	94.9
PRK14737	186	gmk guanylate kinase; Provisional	94.87
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	94.82
PF00005	137	ABC_tran: ABC transporter This structure is on hol	94.81
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	94.79
PF13173	128	AAA_14: AAA domain	94.79
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	94.78
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	94.75
KOG0468|consensus	971		94.75
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	94.73
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	94.72
COG4525	259	TauB ABC-type taurine transport system, ATPase com	94.68
PF13555	62	AAA_29: P-loop containing region of AAA domain	94.68
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	94.67
PF07726	131	AAA_3: ATPase family associated with various cellu	94.66
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	94.62
PRK08233	182	hypothetical protein; Provisional	94.58
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	94.4
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	94.39
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	94.38
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	94.38
PLN02200	234	adenylate kinase family protein	94.22
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	94.18
PRK11545	163	gntK gluconate kinase 1; Provisional	94.14
PRK14495	452	putative molybdopterin-guanine dinucleotide biosyn	94.14
PTZ00301	210	uridine kinase; Provisional	94.13
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	94.1
PF02263	260	GBP: Guanylate-binding protein, N-terminal domain;	94.08
PRK07667	193	uridine kinase; Provisional	94.05
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	94.04
PHA02530	300	pseT polynucleotide kinase; Provisional	94.0
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	93.91
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	93.9
PTZ00088	229	adenylate kinase 1; Provisional	93.89
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	93.84
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	93.82
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	93.82
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	93.82
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	93.81
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	93.81
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	93.78
PRK14493	274	putative bifunctional molybdopterin-guanine dinucl	93.78
PRK06547	172	hypothetical protein; Provisional	93.75
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	93.74
PRK00300	205	gmk guanylate kinase; Provisional	93.74
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	93.73
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	93.72
PRK05480	209	uridine/cytidine kinase; Provisional	93.7
PRK10646	153	ADP-binding protein; Provisional	93.65
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	93.63
PRK14530	215	adenylate kinase; Provisional	93.62
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	93.61
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	93.57
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	93.56
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	93.54
cd03269	210	ABC_putative_ATPase This subfamily is involved in	93.52
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	93.52
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	93.52
cd03112	158	CobW_like The function of this protein family is u	93.49
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	93.47
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	93.46
PRK14527	191	adenylate kinase; Provisional	93.44
KOG0733|consensus	802		93.42
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	93.39
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	93.38
PRK14532	188	adenylate kinase; Provisional	93.38
TIGR00101	199	ureG urease accessory protein UreG. This model rep	93.37
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	93.37
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	93.35
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	93.34
COG2884	223	FtsE Predicted ATPase involved in cell division [C	93.32
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	93.29
PF13476	202	AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V	93.29
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	93.28
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	93.26
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	93.26
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	93.25
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	93.24
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	93.23
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	93.21
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	93.2
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	93.18
PRK06217	183	hypothetical protein; Validated	93.18
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	93.18
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	93.17
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	93.16
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	93.16
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	93.15
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	93.13
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	93.13
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	93.11
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	93.11
KOG2485|consensus	335		93.07
COG3638	258	ABC-type phosphate/phosphonate transport system, A	93.07
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	93.05
PRK03839	180	putative kinase; Provisional	93.04
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	93.02
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	93.01
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	92.99
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	92.99
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	92.98
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	92.97
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	92.95
KOG0458|consensus	603		92.94
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	92.94
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	92.94
KOG1533|consensus	290		92.84
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	92.84
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	92.83
KOG0082|consensus	354		92.83
COG0411	250	LivG ABC-type branched-chain amino acid transport	92.83
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	92.83
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	92.77
cd03216	163	ABC_Carb_Monos_I This family represents the domain	92.77
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	92.74
PF13479	213	AAA_24: AAA domain	92.73
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	92.73
cd03215	182	ABC_Carb_Monos_II This family represents domain II	92.73
PRK14531	183	adenylate kinase; Provisional	92.71
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	92.7
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	92.68
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	92.65
PRK15453	290	phosphoribulokinase; Provisional	92.65
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	92.65
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	92.64
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	92.61
PRK06696	223	uridine kinase; Validated	92.6
PRK10908	222	cell division protein FtsE; Provisional	92.58
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	92.58
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	92.58
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	92.58
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	92.56
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	92.56
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	92.56
COG0802	149	Predicted ATPase or kinase [General function predi	92.55
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	92.55
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	92.51

>KOG0084|consensus

Probab=99.94  E-value=2e-27  Score=151.77  Aligned_cols=82  Identities=17%  Similarity=0.418  Sum_probs=76.2

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|++|||||+|+.||..+.|.+.|..|+|++++.    ++++.++++||||+||+||+.            |+|||++
T Consensus        13 iliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT   92 (205)
T KOG0084|consen   13 ILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDIT   92 (205)
T ss_pred             EEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcc
Confidence            446999999999999999999999999999999853    678899999999999999998            9999999


Q ss_pred             ChhhHHHHHHHHHHHHHh
Q psy2967          83 DTDKLEASRNELHALIEK  100 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~~  100 (101)
                      +++||++++.|+.|+.++
T Consensus        93 ~~~SF~~v~~Wi~Ei~~~  110 (205)
T KOG0084|consen   93 KQESFNNVKRWIQEIDRY  110 (205)
T ss_pred             cHHHhhhHHHHHHHhhhh
Confidence            999999999999998764

>KOG0094|consensus

Probab=99.93  E-value=1.7e-26  Score=147.62  Aligned_cols=80  Identities=20%  Similarity=0.449  Sum_probs=74.7

Q ss_pred             eccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      +|+.+||||||++||+.+.|...|.+|||+++..    +.+..+.+++|||+|||+|+.            |+|||++|+
T Consensus        28 lGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~  107 (221)
T KOG0094|consen   28 LGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDR  107 (221)
T ss_pred             EccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEecccc
Confidence            4999999999999999999999999999999853    678889999999999999999            999999999


Q ss_pred             hhHHHHHHHHHHHHHh
Q psy2967          85 DKLEASRNELHALIEK  100 (101)
Q Consensus        85 ~sf~~~~~~~~~i~~~  100 (101)
                      .||++..+|++.++.+
T Consensus       108 ~Sfe~t~kWi~dv~~e  123 (221)
T KOG0094|consen  108 NSFENTSKWIEDVRRE  123 (221)
T ss_pred             chHHHHHHHHHHHHhc
Confidence            9999999999998753

>KOG0092|consensus

Probab=99.93  E-value=1.3e-25  Score=143.05  Aligned_cols=86  Identities=21%  Similarity=0.423  Sum_probs=76.0

Q ss_pred             ceeeeE-eccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EE
Q psy2967          15 PTVGFN-MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IY   77 (101)
Q Consensus        15 ~~~g~~-vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~   77 (101)
                      +.+.++ +|+.+||||||+.||..++|.+...||+|.-+.+    +....+++.||||+||++|++            |+
T Consensus         4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAiv   83 (200)
T KOG0092|consen    4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIV   83 (200)
T ss_pred             ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEE
Confidence            444555 4999999999999999999999899999977643    455679999999999999988            99


Q ss_pred             EEECCChhhHHHHHHHHHHHHHh
Q psy2967          78 MVDAADTDKLEASRNELHALIEK  100 (101)
Q Consensus        78 v~d~~~~~sf~~~~~~~~~i~~~  100 (101)
                      |||+++.+||..++.|++++.++
T Consensus        84 vYDit~~~SF~~aK~WvkeL~~~  106 (200)
T KOG0092|consen   84 VYDITDEESFEKAKNWVKELQRQ  106 (200)
T ss_pred             EEecccHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999865

>KOG0079|consensus

Probab=99.92  E-value=1.4e-25  Score=138.37  Aligned_cols=83  Identities=22%  Similarity=0.433  Sum_probs=75.9

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|++|||||||+.+|..+.|..+|..|+|+++.  +  +.+..++++|||++||++|+.            ++|||++
T Consensus        12 lIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVT   91 (198)
T KOG0079|consen   12 LIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVT   91 (198)
T ss_pred             HeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECc
Confidence            34699999999999999999999999999998885  2  668889999999999999988            8999999


Q ss_pred             ChhhHHHHHHHHHHHHHhC
Q psy2967          83 DTDKLEASRNELHALIEKL  101 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~~l  101 (101)
                      +.+||.++++|++++.+.+
T Consensus        92 n~ESF~Nv~rWLeei~~nc  110 (198)
T KOG0079|consen   92 NGESFNNVKRWLEEIRNNC  110 (198)
T ss_pred             chhhhHhHHHHHHHHHhcC
Confidence            9999999999999998753

>KOG0098|consensus

Probab=99.91  E-value=2.3e-24  Score=137.03  Aligned_cols=87  Identities=16%  Similarity=0.264  Sum_probs=78.9

Q ss_pred             cceeeeE-eccCCCcceeeeeccccCcCCCCCCCccceEEE----EEecCcEEEEEEeeCCCCccce------------E
Q psy2967          14 IPTVGFN-MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRS------------I   76 (101)
Q Consensus        14 ~~~~g~~-vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~D~~G~~~~~~------------i   76 (101)
                      .+.+.+. +|+.|||||+|+.||+.+.|.+.+..|+|+++-    .++.+.++++||||+||++|++            |
T Consensus         4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal   83 (216)
T KOG0098|consen    4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL   83 (216)
T ss_pred             cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence            4555554 599999999999999999999999999998873    4789999999999999999988            9


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHh
Q psy2967          77 YMVDAADTDKLEASRNELHALIEK  100 (101)
Q Consensus        77 ~v~d~~~~~sf~~~~~~~~~i~~~  100 (101)
                      +|||+++++||+++..|+.++.++
T Consensus        84 LVydit~r~sF~hL~~wL~D~rq~  107 (216)
T KOG0098|consen   84 LVYDITRRESFNHLTSWLEDARQH  107 (216)
T ss_pred             EEEEccchhhHHHHHHHHHHHHHh
Confidence            999999999999999999999876

>KOG0080|consensus

Probab=99.90  E-value=3.6e-24  Score=133.65  Aligned_cols=88  Identities=19%  Similarity=0.265  Sum_probs=78.7

Q ss_pred             ccccceeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce-----------
Q psy2967          11 QDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS-----------   75 (101)
Q Consensus        11 ~~~~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~-----------   75 (101)
                      .+.....-+.+|++|||||||+.||+.+.|.+....|+|++++.    ++++.+++.||||+||++||.           
T Consensus         7 ~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqG   86 (209)
T KOG0080|consen    7 GYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQG   86 (209)
T ss_pred             CcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCce
Confidence            34445566778999999999999999999998888889999863    788999999999999999998           


Q ss_pred             -EEEEECCChhhHHHHHHHHHHHH
Q psy2967          76 -IYMVDAADTDKLEASRNELHALI   98 (101)
Q Consensus        76 -i~v~d~~~~~sf~~~~~~~~~i~   98 (101)
                       |+|||++.|++|.++..|++|+-
T Consensus        87 iIlVYDVT~Rdtf~kLd~W~~Eld  110 (209)
T KOG0080|consen   87 IILVYDVTSRDTFVKLDIWLKELD  110 (209)
T ss_pred             eEEEEEccchhhHHhHHHHHHHHH
Confidence             99999999999999999999874

>KOG0078|consensus

Probab=99.90  E-value=1.5e-23  Score=135.25  Aligned_cols=85  Identities=20%  Similarity=0.400  Sum_probs=77.0

Q ss_pred             eeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEE
Q psy2967          16 TVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMV   79 (101)
Q Consensus        16 ~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~   79 (101)
                      .+-+.+|+++||||+++.||.++.|...+..|+|++++.    +++..+.+++|||+||++|+.            ++||
T Consensus        13 ~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~Lvy   92 (207)
T KOG0078|consen   13 FKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   92 (207)
T ss_pred             EEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEE
Confidence            344557999999999999999999999999999999853    577889999999999999988            9999


Q ss_pred             ECCChhhHHHHHHHHHHHHHh
Q psy2967          80 DAADTDKLEASRNELHALIEK  100 (101)
Q Consensus        80 d~~~~~sf~~~~~~~~~i~~~  100 (101)
                      |+++..||+++..|++.|-++
T Consensus        93 Ditne~Sfeni~~W~~~I~e~  113 (207)
T KOG0078|consen   93 DITNEKSFENIRNWIKNIDEH  113 (207)
T ss_pred             EccchHHHHHHHHHHHHHHhh
Confidence            999999999999999988764

>KOG0087|consensus

Probab=99.89  E-value=1.8e-23  Score=134.92  Aligned_cols=81  Identities=20%  Similarity=0.381  Sum_probs=76.3

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      .+|+++||||-|+.||..++|..+..+|+|+++.+    ++++.++.+||||+||+||+.            ++|||++.
T Consensus        19 liGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr   98 (222)
T KOG0087|consen   19 LIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITR   98 (222)
T ss_pred             EeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEEEEechh
Confidence            46999999999999999999999999999999864    778899999999999999988            99999999


Q ss_pred             hhhHHHHHHHHHHHHHh
Q psy2967          84 TDKLEASRNELHALIEK  100 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~~  100 (101)
                      +.+|+++.+|+.|++.|
T Consensus        99 ~~Tfenv~rWL~ELRdh  115 (222)
T KOG0087|consen   99 RQTFENVERWLKELRDH  115 (222)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999999876

>KOG0394|consensus

Probab=99.88  E-value=9e-24  Score=134.06  Aligned_cols=87  Identities=21%  Similarity=0.359  Sum_probs=77.7

Q ss_pred             cceeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EE
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IY   77 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~   77 (101)
                      .++.-+..|++|||||||+++|..++|.++|..|||.++.+    ++.+.+.++||||+||++|++            ++
T Consensus         8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvl   87 (210)
T KOG0394|consen    8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVL   87 (210)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEE
Confidence            44555556999999999999999999999999999988743    677789999999999999998            99


Q ss_pred             EEECCChhhHHHHHHHHHHHHHh
Q psy2967          78 MVDAADTDKLEASRNELHALIEK  100 (101)
Q Consensus        78 v~d~~~~~sf~~~~~~~~~i~~~  100 (101)
                      |||+++++||+++..|.+|++.+
T Consensus        88 vydv~~~~Sfe~L~~Wr~EFl~q  110 (210)
T KOG0394|consen   88 VYDVNNPKSFENLENWRKEFLIQ  110 (210)
T ss_pred             EeecCChhhhccHHHHHHHHHHh
Confidence            99999999999999999998753

>KOG0086|consensus

Probab=99.87  E-value=7.1e-23  Score=127.18  Aligned_cols=83  Identities=23%  Similarity=0.370  Sum_probs=74.8

Q ss_pred             eeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEE
Q psy2967          16 TVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMV   79 (101)
Q Consensus        16 ~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~   79 (101)
                      ...+.+|+.|.|||+|+++|+.++|.++...|+|+++-.    +.++.++++||||+||++|++            ++||
T Consensus        10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVY   89 (214)
T KOG0086|consen   10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   89 (214)
T ss_pred             heeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEE
Confidence            344567999999999999999999999999999988842    557889999999999999998            9999


Q ss_pred             ECCChhhHHHHHHHHHHHH
Q psy2967          80 DAADTDKLEASRNELHALI   98 (101)
Q Consensus        80 d~~~~~sf~~~~~~~~~i~   98 (101)
                      |+++++||+++..|+..+.
T Consensus        90 D~TsrdsfnaLtnWL~DaR  108 (214)
T KOG0086|consen   90 DITSRDSFNALTNWLTDAR  108 (214)
T ss_pred             eccchhhHHHHHHHHHHHH
Confidence            9999999999999998764

>KOG0070|consensus

Probab=99.87  E-value=6.2e-22  Score=125.52  Aligned_cols=95  Identities=35%  Similarity=0.692  Sum_probs=82.5

Q ss_pred             CCcccccccc------ccccceeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccc
Q psy2967           1 MELTLSGQFS------QDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR   74 (101)
Q Consensus         1 m~~~~~~~~~------~~~~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~   74 (101)
                      |++..+..++      +..|.++|+.    ++||||+++++..+++.+ +.||+|++++.+..+++++.+||.+||+++|
T Consensus         1 MG~~~s~~~~~~~~~~e~~IlmlGLD----~AGKTTILykLk~~E~vt-tvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R   75 (181)
T KOG0070|consen    1 MGLIFSKLFSGLFGKKEMRILMVGLD----AAGKTTILYKLKLGEIVT-TVPTIGFNVETVEYKNISFTVWDVGGQEKLR   75 (181)
T ss_pred             CcchhhhhhhhccCcceEEEEEEecc----CCCceeeeEeeccCCccc-CCCccccceeEEEEcceEEEEEecCCCcccc
Confidence            6666655544      4456666665    999999999999999985 5999999999999999999999999999888


Q ss_pred             e------------EEEEECCChhhHHHHHHHHHHHHHh
Q psy2967          75 S------------IYMVDAADTDKLEASRNELHALIEK  100 (101)
Q Consensus        75 ~------------i~v~d~~~~~sf~~~~~~~~~i~~~  100 (101)
                      .            |||+|.+|++++.++++.+..++.+
T Consensus        76 ~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~  113 (181)
T KOG0070|consen   76 PLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAE  113 (181)
T ss_pred             cchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcC
Confidence            7            9999999999999999999988764

>KOG0091|consensus

Probab=99.87  E-value=6.4e-23  Score=128.39  Aligned_cols=81  Identities=23%  Similarity=0.399  Sum_probs=72.7

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE----E-EecCcEEEEEEeeCCCCccce------------EEEEEC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR----K-ITKGNVTIKVWDIGGQPRFRS------------IYMVDA   81 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~----~-~~~~~~~~~i~D~~G~~~~~~------------i~v~d~   81 (101)
                      +.+||+.||||||+++|.+++|.+-..||+|+++-    + -.+..+++++|||+||++|++            ++|||+
T Consensus        12 ivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvllvydi   91 (213)
T KOG0091|consen   12 IVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDI   91 (213)
T ss_pred             EEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEec
Confidence            45699999999999999999999989999998873    2 246789999999999999998            889999


Q ss_pred             CChhhHHHHHHHHHHHHH
Q psy2967          82 ADTDKLEASRNELHALIE   99 (101)
Q Consensus        82 ~~~~sf~~~~~~~~~i~~   99 (101)
                      +|++||+++..|+++..-
T Consensus        92 tnr~sfehv~~w~~ea~m  109 (213)
T KOG0091|consen   92 TNRESFEHVENWVKEAAM  109 (213)
T ss_pred             cchhhHHHHHHHHHHHHH
Confidence            999999999999998653

>KOG0081|consensus

Probab=99.86  E-value=1.6e-22  Score=126.23  Aligned_cols=86  Identities=24%  Similarity=0.434  Sum_probs=75.3

Q ss_pred             ceeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEE--E-----------ecCcEEEEEEeeCCCCccce------
Q psy2967          15 PTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK--I-----------TKGNVTIKVWDIGGQPRFRS------   75 (101)
Q Consensus        15 ~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~--~-----------~~~~~~~~i~D~~G~~~~~~------   75 (101)
                      .+..+.+|++||||||+++++..+.|..+...|+|+++++  +           ....+.+++|||+||++|++      
T Consensus         9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFf   88 (219)
T KOG0081|consen    9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFF   88 (219)
T ss_pred             HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHH
Confidence            3445677999999999999999999999999999999853  1           12348999999999999999      


Q ss_pred             ------EEEEECCChhhHHHHHHHHHHHHHh
Q psy2967          76 ------IYMVDAADTDKLEASRNELHALIEK  100 (101)
Q Consensus        76 ------i~v~d~~~~~sf~~~~~~~~~i~~~  100 (101)
                            +++||+++.+||-++.+|+.++..|
T Consensus        89 RDAMGFlLiFDlT~eqSFLnvrnWlSQL~~h  119 (219)
T KOG0081|consen   89 RDAMGFLLIFDLTSEQSFLNVRNWLSQLQTH  119 (219)
T ss_pred             HhhccceEEEeccchHHHHHHHHHHHHHHHh
Confidence                  9999999999999999999998754

>cd04120 Rab12 Rab12 subfamily

Probab=99.86  E-value=5.3e-22  Score=129.41  Aligned_cols=80  Identities=16%  Similarity=0.355  Sum_probs=69.7

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      .+|++|||||||++||..+.|.+.+.||++.++.  .  ++++.+.+++||++|+++|+.            |+|||++|
T Consensus         5 vlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd   84 (202)
T cd04120           5 IIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITK   84 (202)
T ss_pred             EECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcC
Confidence            4699999999999999999999999999986653  3  345569999999999998876            99999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      ++||++++.|++.+.+
T Consensus        85 ~~Sf~~l~~w~~~i~~  100 (202)
T cd04120          85 KETFDDLPKWMKMIDK  100 (202)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999987653

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04133 Rop_like Rop subfamily

Probab=99.86  E-value=1.1e-21  Score=125.54  Aligned_cols=80  Identities=20%  Similarity=0.312  Sum_probs=70.8

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      .+|+++||||||+.+|..+.|.+++.||++..+..   +++..+.+.+||++|+++++.            |+|||++++
T Consensus         6 v~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~   85 (176)
T cd04133           6 TVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISR   85 (176)
T ss_pred             EECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCH
Confidence            46999999999999999999999999999866642   456679999999999999876            999999999


Q ss_pred             hhHHHH-HHHHHHHHH
Q psy2967          85 DKLEAS-RNELHALIE   99 (101)
Q Consensus        85 ~sf~~~-~~~~~~i~~   99 (101)
                      +||+++ ..|+.++.+
T Consensus        86 ~Sf~~~~~~w~~~i~~  101 (176)
T cd04133          86 ASYENVLKKWVPELRH  101 (176)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            999999 689998864

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>KOG0095|consensus

Probab=99.86  E-value=1.3e-21  Score=121.19  Aligned_cols=81  Identities=20%  Similarity=0.373  Sum_probs=73.7

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEE--EE--EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM--RK--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~--~~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +-||..|||||+|++||.++-|++....|+|+++  ++  +.+..++++||||+||++||+            |++||++
T Consensus        11 vlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydis   90 (213)
T KOG0095|consen   11 VLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDIS   90 (213)
T ss_pred             EEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecc
Confidence            3469999999999999999999999999999876  33  678889999999999999998            9999999


Q ss_pred             ChhhHHHHHHHHHHHHH
Q psy2967          83 DTDKLEASRNELHALIE   99 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~   99 (101)
                      ...||.-+.+|+.+|.+
T Consensus        91 cqpsfdclpewlreie~  107 (213)
T KOG0095|consen   91 CQPSFDCLPEWLREIEQ  107 (213)
T ss_pred             cCcchhhhHHHHHHHHH
Confidence            99999999999999864

>KOG0083|consensus

Probab=99.86  E-value=8e-22  Score=120.22  Aligned_cols=79  Identities=27%  Similarity=0.521  Sum_probs=71.5

Q ss_pred             eccCCCcceeeeeccccCcCCC-CCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQ-DMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~-~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      +|++++|||+|+.||..+.|.. +..+|+|++++.    .+.+.+++++|||+||++|++            +++||+.|
T Consensus         3 lgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydian   82 (192)
T KOG0083|consen    3 LGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIAN   82 (192)
T ss_pred             cccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeeccc
Confidence            5999999999999999999875 467899999864    567789999999999999998            88999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      +.||++.+.|+.+|.+
T Consensus        83 kasfdn~~~wlsei~e   98 (192)
T KOG0083|consen   83 KASFDNCQAWLSEIHE   98 (192)
T ss_pred             chhHHHHHHHHHHHHH
Confidence            9999999999999875

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.86  E-value=1.5e-21  Score=125.42  Aligned_cols=83  Identities=18%  Similarity=0.319  Sum_probs=72.1

Q ss_pred             eeEeccCCCcceeeeeccccCcCCCCCCCccceEEE---EEecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          18 GFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        18 g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      -+.+|+++||||||+.+|..+.|.++|.||++..+.   .+++..+.+++|||+|+++|+.            |+|||++
T Consensus         8 ivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit   87 (182)
T cd04172           8 IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDIS   87 (182)
T ss_pred             EEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECC
Confidence            344699999999999999999999999999987764   2556779999999999988765            8999999


Q ss_pred             ChhhHHHH-HHHHHHHHHh
Q psy2967          83 DTDKLEAS-RNELHALIEK  100 (101)
Q Consensus        83 ~~~sf~~~-~~~~~~i~~~  100 (101)
                      ++.||+++ ..|+.++.+.
T Consensus        88 ~~~Sf~~~~~~w~~~i~~~  106 (182)
T cd04172          88 RPETLDSVLKKWKGEIQEF  106 (182)
T ss_pred             CHHHHHHHHHHHHHHHHHH
Confidence            99999998 7899888653

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd01875 RhoG RhoG subfamily

Probab=99.85  E-value=2e-21  Score=125.33  Aligned_cols=81  Identities=20%  Similarity=0.294  Sum_probs=70.8

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE---EEecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      +.+|+++||||||+.||..+.|.+.+.||++.++.   .++++.+.+++||++|+++|+.            |+|||++|
T Consensus         7 ~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~   86 (191)
T cd01875           7 VVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIAS   86 (191)
T ss_pred             EEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCC
Confidence            44699999999999999999999999999997664   2566779999999999999876            89999999


Q ss_pred             hhhHHHHH-HHHHHHHH
Q psy2967          84 TDKLEASR-NELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~-~~~~~i~~   99 (101)
                      ++||+++. .|+.++.+
T Consensus        87 ~~Sf~~~~~~w~~~i~~  103 (191)
T cd01875          87 PSSYENVRHKWHPEVCH  103 (191)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999997 58877654

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.85  E-value=3.5e-21  Score=125.59  Aligned_cols=81  Identities=16%  Similarity=0.225  Sum_probs=70.9

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--EEe-------cCcEEEEEEeeCCCCccce------------EE
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KIT-------KGNVTIKVWDIGGQPRFRS------------IY   77 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~~-------~~~~~~~i~D~~G~~~~~~------------i~   77 (101)
                      +.+|+++||||||+++|+.+.|.+.+.||+|.++.  .+.       .+.+.+++||++|+++++.            |+
T Consensus         4 vlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIl   83 (202)
T cd04102           4 LVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNGIIL   83 (202)
T ss_pred             EEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCEEEE
Confidence            45799999999999999999999999999996653  222       3568999999999998876            99


Q ss_pred             EEECCChhhHHHHHHHHHHHHH
Q psy2967          78 MVDAADTDKLEASRNELHALIE   99 (101)
Q Consensus        78 v~d~~~~~sf~~~~~~~~~i~~   99 (101)
                      |||+++++||+++..|+.++++
T Consensus        84 VyDvtn~~Sf~~l~~W~~ei~~  105 (202)
T cd04102          84 VHDLTNRKSSQNLQRWSLEALN  105 (202)
T ss_pred             EEECcChHHHHHHHHHHHHHHH
Confidence            9999999999999999999875

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04131 Rnd Rnd subfamily

Probab=99.85  E-value=3.9e-21  Score=122.96  Aligned_cols=81  Identities=17%  Similarity=0.356  Sum_probs=70.6

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEE---EEecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      .+|+++||||||+++|..+.|...+.||++..+.   .+++..+.+.+||++|+++++.            |+|||++++
T Consensus         6 ~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~   85 (178)
T cd04131           6 VVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRP   85 (178)
T ss_pred             EECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCCh
Confidence            4699999999999999999999999999987664   2556779999999999988765            899999999


Q ss_pred             hhHHHH-HHHHHHHHHh
Q psy2967          85 DKLEAS-RNELHALIEK  100 (101)
Q Consensus        85 ~sf~~~-~~~~~~i~~~  100 (101)
                      +||+++ ..|+.++.+.
T Consensus        86 ~Sf~~~~~~w~~~i~~~  102 (178)
T cd04131          86 ETLDSVLKKWRGEIQEF  102 (178)
T ss_pred             hhHHHHHHHHHHHHHHH
Confidence            999996 7899888653

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04128 Spg1 Spg1p

Probab=99.84  E-value=5.7e-21  Score=122.53  Aligned_cols=81  Identities=23%  Similarity=0.450  Sum_probs=70.8

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|+++||||||++||..+.|.++|.||+|.++.  .  +++..+.+.+||++|+++++.            ++|||++
T Consensus         4 ~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t   83 (182)
T cd04128           4 GLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLT   83 (182)
T ss_pred             EEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECc
Confidence            34699999999999999999999999999997763  3  345568999999999998766            8899999


Q ss_pred             ChhhHHHHHHHHHHHHH
Q psy2967          83 DTDKLEASRNELHALIE   99 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~   99 (101)
                      +++||+++..|+.++.+
T Consensus        84 ~~~s~~~i~~~~~~~~~  100 (182)
T cd04128          84 RKSTLNSIKEWYRQARG  100 (182)
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999999999998865

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04121 Rab40 Rab40 subfamily

Probab=99.84  E-value=7e-21  Score=122.97  Aligned_cols=82  Identities=17%  Similarity=0.288  Sum_probs=71.3

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|+++||||||+.+|..++|.+.+.||++.++.  .  +++..+.+++||++|+++|+.            |+|||++
T Consensus        10 vviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t   89 (189)
T cd04121          10 LLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDIT   89 (189)
T ss_pred             EEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECc
Confidence            34699999999999999999999888899887763  2  345569999999999998776            9999999


Q ss_pred             ChhhHHHHHHHHHHHHHh
Q psy2967          83 DTDKLEASRNELHALIEK  100 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~~  100 (101)
                      +++||+++..|++++.++
T Consensus        90 ~~~Sf~~~~~w~~~i~~~  107 (189)
T cd04121          90 NRWSFDGIDRWIKEIDEH  107 (189)
T ss_pred             CHHHHHHHHHHHHHHHHh
Confidence            999999999999998654

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.83  E-value=9.7e-21  Score=125.75  Aligned_cols=82  Identities=15%  Similarity=0.353  Sum_probs=71.6

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      +.+|+++||||||+.+|..+.|.+.|.||++.++..   +++..+.+.+|||+|+++|+.            |+|||+++
T Consensus        17 vvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~   96 (232)
T cd04174          17 VLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISR   96 (232)
T ss_pred             EEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCC
Confidence            346999999999999999999999999999877642   456779999999999998775            99999999


Q ss_pred             hhhHHHH-HHHHHHHHHh
Q psy2967          84 TDKLEAS-RNELHALIEK  100 (101)
Q Consensus        84 ~~sf~~~-~~~~~~i~~~  100 (101)
                      ++||+++ ..|+.++.+.
T Consensus        97 ~~Sf~~~~~~w~~~i~~~  114 (232)
T cd04174          97 PETVDSALKKWKAEIMDY  114 (232)
T ss_pred             hHHHHHHHHHHHHHHHHh
Confidence            9999985 8899988753

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.83  E-value=6.6e-21  Score=124.07  Aligned_cols=80  Identities=24%  Similarity=0.441  Sum_probs=71.1

Q ss_pred             eccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      +|+++||||||+++|+.+.|.+.+.||+|.++..    ++++.+.+.+||++|+++|+.            |+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            5899999999999999999998899999977743    345679999999999998865            899999999


Q ss_pred             hhHHHHHHHHHHHHHh
Q psy2967          85 DKLEASRNELHALIEK  100 (101)
Q Consensus        85 ~sf~~~~~~~~~i~~~  100 (101)
                      .||+++..|+.++.+.
T Consensus        81 ~S~~~i~~w~~~i~~~   96 (200)
T smart00176       81 VTYKNVPNWHRDLVRV   96 (200)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999998753

Ran is involved in the active transport of proteins through nuclear pores.

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.83  E-value=1.9e-20  Score=119.35  Aligned_cols=81  Identities=15%  Similarity=0.223  Sum_probs=69.3

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE-E--EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR-K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      +.+|++|||||||+++|..+.|.+.|.||++..+. .  +.+..+.+.+||++|+++++.            |+|||+++
T Consensus         5 ~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~   84 (175)
T cd01874           5 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS   84 (175)
T ss_pred             EEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCC
Confidence            34699999999999999999999899999987764 3  345568999999999998754            99999999


Q ss_pred             hhhHHHHH-HHHHHHHH
Q psy2967          84 TDKLEASR-NELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~-~~~~~i~~   99 (101)
                      ++||+++. .|+.++.+
T Consensus        85 ~~s~~~~~~~w~~~i~~  101 (175)
T cd01874          85 PSSFENVKEKWVPEITH  101 (175)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999997 58887754

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.82  E-value=7.2e-20  Score=120.49  Aligned_cols=85  Identities=21%  Similarity=0.316  Sum_probs=72.5

Q ss_pred             eeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEE--E--ecCcEEEEEEeeCCCCccce------------EEEE
Q psy2967          16 TVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK--I--TKGNVTIKVWDIGGQPRFRS------------IYMV   79 (101)
Q Consensus        16 ~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~i~D~~G~~~~~~------------i~v~   79 (101)
                      +.-+.+|++|||||||++++..++|...+.||++.++..  +  ....+.+.+||++|+++++.            |+||
T Consensus        14 ~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvf   93 (219)
T PLN03071         14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (219)
T ss_pred             eEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEE
Confidence            333446999999999999999999999999999987654  2  34568999999999988755            8999


Q ss_pred             ECCChhhHHHHHHHHHHHHHh
Q psy2967          80 DAADTDKLEASRNELHALIEK  100 (101)
Q Consensus        80 d~~~~~sf~~~~~~~~~i~~~  100 (101)
                      |+++++||+++..|+.++.+.
T Consensus        94 D~~~~~s~~~i~~w~~~i~~~  114 (219)
T PLN03071         94 DVTARLTYKNVPTWHRDLCRV  114 (219)
T ss_pred             eCCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999988653

>KOG0088|consensus

Probab=99.82  E-value=3.2e-21  Score=120.40  Aligned_cols=79  Identities=19%  Similarity=0.383  Sum_probs=70.9

Q ss_pred             eccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      +|...||||||+.||++++|...+..|+-..+.  .  +......+.||||+||++|..            ++|||++|+
T Consensus        19 LGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDr   98 (218)
T KOG0088|consen   19 LGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDR   98 (218)
T ss_pred             EcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccch
Confidence            499999999999999999999988888875553  2  566789999999999999988            999999999


Q ss_pred             hhHHHHHHHHHHHHH
Q psy2967          85 DKLEASRNELHALIE   99 (101)
Q Consensus        85 ~sf~~~~~~~~~i~~   99 (101)
                      +||+.++.|..++..
T Consensus        99 dSFqKVKnWV~Elr~  113 (218)
T KOG0088|consen   99 DSFQKVKNWVLELRT  113 (218)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999875

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.82  E-value=5.2e-20  Score=119.35  Aligned_cols=80  Identities=26%  Similarity=0.390  Sum_probs=69.9

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--Ee-cCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--IT-KGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~-~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      .+|++|||||||+++|..+.+...+.||++.++.  .  +. +..+.+.+||++|+++++.            |+|||++
T Consensus         5 ivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t   84 (201)
T cd04107           5 VIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVT   84 (201)
T ss_pred             EECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECC
Confidence            4699999999999999999999899999997653  2  33 5678999999999998765            8999999


Q ss_pred             ChhhHHHHHHHHHHHHH
Q psy2967          83 DTDKLEASRNELHALIE   99 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~   99 (101)
                      +++||+++..|+.++.+
T Consensus        85 ~~~s~~~~~~~~~~i~~  101 (201)
T cd04107          85 RPSTFEAVLKWKADLDS  101 (201)
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999999999988764

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.81  E-value=3.4e-20  Score=117.56  Aligned_cols=81  Identities=22%  Similarity=0.440  Sum_probs=70.8

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      .+|+++||||||+++|..+.|.+.|.||++.++.  .  +.+..+.+++||++|++++..            ++|||+++
T Consensus         5 ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~   84 (170)
T cd04108           5 VVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTD   84 (170)
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcC
Confidence            4699999999999999999999999999987764  2  345568999999999998765            99999999


Q ss_pred             hhhHHHHHHHHHHHHHh
Q psy2967          84 TDKLEASRNELHALIEK  100 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~~  100 (101)
                      +++|+++..|+.+++++
T Consensus        85 ~~s~~~~~~~~~~~~~~  101 (170)
T cd04108          85 VASLEHTRQWLEDALKE  101 (170)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999988653

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.81  E-value=5.3e-20  Score=116.05  Aligned_cols=80  Identities=29%  Similarity=0.528  Sum_probs=72.7

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKL   87 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf   87 (101)
                      .+|++|||||||+++|..+.+.+.+.||++++...+..+++.+.+||++|+++++.            |+|||.+++.+|
T Consensus         4 ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~   83 (164)
T cd04162           4 VLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERL   83 (164)
T ss_pred             EECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHH
Confidence            36899999999999999998888899999988777888899999999999998765            999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2967          88 EASRNELHALIE   99 (101)
Q Consensus        88 ~~~~~~~~~i~~   99 (101)
                      .+++.|+.+++.
T Consensus        84 ~~~~~~l~~~~~   95 (164)
T cd04162          84 PLARQELHQLLQ   95 (164)
T ss_pred             HHHHHHHHHHHh
Confidence            999999988864

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.81  E-value=4.6e-20  Score=121.82  Aligned_cols=81  Identities=17%  Similarity=0.300  Sum_probs=69.3

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE---EEecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      +.+|+++||||||+.+|..++|.+.|.||++.++.   .+++..+.+.+||++|++.|..            |+|||+++
T Consensus         5 vvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~   84 (222)
T cd04173           5 VVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISR   84 (222)
T ss_pred             EEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCC
Confidence            34699999999999999999999999999987764   2566779999999999987765            99999999


Q ss_pred             hhhHHHHH-HHHHHHHH
Q psy2967          84 TDKLEASR-NELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~-~~~~~i~~   99 (101)
                      ++||+++. .|..++..
T Consensus        85 ~~Sf~~i~~~w~~~~~~  101 (222)
T cd04173          85 PETLDSVLKKWQGETQE  101 (222)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999994 67766543

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04117 Rab15 Rab15 subfamily

Probab=99.81  E-value=5e-20  Score=115.64  Aligned_cols=80  Identities=18%  Similarity=0.332  Sum_probs=69.5

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      .+|++|||||||++++..+.|.+.+.||++.++.  .  +.+..+.+.+||++|+++++.            ++|||+++
T Consensus         5 vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   84 (161)
T cd04117           5 LIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISS   84 (161)
T ss_pred             EECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCC
Confidence            4699999999999999999999889999997663  3  344468899999999988765            89999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      ++||+++..|++++.+
T Consensus        85 ~~sf~~~~~~~~~~~~  100 (161)
T cd04117          85 ERSYQHIMKWVSDVDE  100 (161)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998764

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.81  E-value=4.9e-20  Score=115.06  Aligned_cols=82  Identities=26%  Similarity=0.504  Sum_probs=71.9

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|+++||||||+++|.++.|.+++.||+|.+...    ++...+.+.+||++|++++..            |+|||++
T Consensus         3 ~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~   82 (162)
T PF00071_consen    3 VVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVT   82 (162)
T ss_dssp             EEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETT
T ss_pred             EEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            347999999999999999999999999999877643    345678999999999998765            9999999


Q ss_pred             ChhhHHHHHHHHHHHHHh
Q psy2967          83 DTDKLEASRNELHALIEK  100 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~~  100 (101)
                      +++||+++..|++++.+.
T Consensus        83 ~~~S~~~~~~~~~~i~~~  100 (162)
T PF00071_consen   83 DEESFENLKKWLEEIQKY  100 (162)
T ss_dssp             BHHHHHTHHHHHHHHHHH
T ss_pred             cccccccccccccccccc
Confidence            999999999999998764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04122 Rab14 Rab14 subfamily

Probab=99.81  E-value=7.3e-20  Score=115.06  Aligned_cols=80  Identities=18%  Similarity=0.335  Sum_probs=69.6

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      .+|+++||||||++++..+.|.+.+.||++.++..    +++..+.+.+||++|+++++.            |+|||+++
T Consensus         7 iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~   86 (166)
T cd04122           7 IIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR   86 (166)
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCC
Confidence            46999999999999999999998999999877642    445568999999999988765            99999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      ++||+++..|+.++..
T Consensus        87 ~~s~~~~~~~~~~~~~  102 (166)
T cd04122          87 RSTYNHLSSWLTDARN  102 (166)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.80  E-value=1.4e-19  Score=115.16  Aligned_cols=82  Identities=34%  Similarity=0.631  Sum_probs=71.5

Q ss_pred             eeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          17 VGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        17 ~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      .-+.+|+++||||||++++..+.+. .+.||++.++..+..+.+.+.+||++|+++++.            |+|||++++
T Consensus        15 ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~   93 (175)
T smart00177       15 RILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDR   93 (175)
T ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCH
Confidence            3344699999999999999988885 588999988877777889999999999988765            999999999


Q ss_pred             hhHHHHHHHHHHHHH
Q psy2967          85 DKLEASRNELHALIE   99 (101)
Q Consensus        85 ~sf~~~~~~~~~i~~   99 (101)
                      ++|+++.+|+.++++
T Consensus        94 ~s~~~~~~~l~~~~~  108 (175)
T smart00177       94 DRIDEAREELHRMLN  108 (175)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999988764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.80  E-value=1.2e-19  Score=115.20  Aligned_cols=81  Identities=15%  Similarity=0.195  Sum_probs=69.6

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE---EEecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      +.+|++|||||||+++|..++|.+.+.||++..+.   .+++..+.+.+||++|+++++.            |+|||+++
T Consensus         6 ~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~   85 (172)
T cd04141           6 VMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTD   85 (172)
T ss_pred             EEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCc
Confidence            34699999999999999999999899999986664   2456668999999999988766            99999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      +.||+++..|+..+.+
T Consensus        86 ~~Sf~~~~~~~~~i~~  101 (172)
T cd04141          86 RHSFQEASEFKKLITR  101 (172)
T ss_pred             hhHHHHHHHHHHHHHH
Confidence            9999999988776643

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04136 Rap_like Rap-like subfamily

Probab=99.80  E-value=1.2e-19  Score=113.12  Aligned_cols=80  Identities=11%  Similarity=0.232  Sum_probs=68.5

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEE-E--EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR-K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      .+|++|||||||++++..+.+.+.+.||++..+. .  +++..+.+.+||++|+++++.            ++|||++++
T Consensus         6 i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~   85 (163)
T cd04136           6 VLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQ   85 (163)
T ss_pred             EECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCH
Confidence            4699999999999999999999889999874433 2  345568899999999998766            899999999


Q ss_pred             hhHHHHHHHHHHHHH
Q psy2967          85 DKLEASRNELHALIE   99 (101)
Q Consensus        85 ~sf~~~~~~~~~i~~   99 (101)
                      ++|+++..|+.++.+
T Consensus        86 ~s~~~~~~~~~~i~~  100 (163)
T cd04136          86 SSFNDLQDLREQILR  100 (163)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988865

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>KOG0093|consensus

Probab=99.80  E-value=1.5e-19  Score=111.63  Aligned_cols=80  Identities=18%  Similarity=0.466  Sum_probs=71.9

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE--E--ecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK--I--TKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|++.||||||+.|+.+..|...+..|+|++++.  +  ..+.++++||||+|+|+++.            |+|||++
T Consensus        25 liiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDit  104 (193)
T KOG0093|consen   25 LIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDIT  104 (193)
T ss_pred             EEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecC
Confidence            446999999999999999999999999999988853  2  34679999999999999988            9999999


Q ss_pred             ChhhHHHHHHHHHHHH
Q psy2967          83 DTDKLEASRNELHALI   98 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~   98 (101)
                      |.+||+.+..|..+|.
T Consensus       105 NeeSf~svqdw~tqIk  120 (193)
T KOG0093|consen  105 NEESFNSVQDWITQIK  120 (193)
T ss_pred             CHHHHHHHHHHHHHhe
Confidence            9999999999998875

>PTZ00369 Ras-like protein; Provisional

Probab=99.80  E-value=2e-19  Score=115.60  Aligned_cols=80  Identities=14%  Similarity=0.217  Sum_probs=70.5

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      .+|++|||||||+++|..+.+.+.+.||++..+..   +++..+.+.+||++|+++++.            ++|||++++
T Consensus        10 iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~   89 (189)
T PTZ00369         10 VVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSR   89 (189)
T ss_pred             EECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCH
Confidence            35999999999999999999998999999877642   566678999999999998866            899999999


Q ss_pred             hhHHHHHHHHHHHHH
Q psy2967          85 DKLEASRNELHALIE   99 (101)
Q Consensus        85 ~sf~~~~~~~~~i~~   99 (101)
                      ++|+++..|+.++.+
T Consensus        90 ~s~~~~~~~~~~i~~  104 (189)
T PTZ00369         90 SSFEEIASFREQILR  104 (189)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988765

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.80  E-value=2.5e-19  Score=114.04  Aligned_cols=81  Identities=17%  Similarity=0.246  Sum_probs=68.4

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE---EEecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      +.+|++|||||||+.+|..+.|.+++.||++..+.   .++++.+.+.+||++|+++++.            |+|||+++
T Consensus         5 ~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~   84 (174)
T cd01871           5 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVS   84 (174)
T ss_pred             EEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCC
Confidence            34699999999999999999999999999975543   2455668999999999987755            89999999


Q ss_pred             hhhHHHHH-HHHHHHHH
Q psy2967          84 TDKLEASR-NELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~-~~~~~i~~   99 (101)
                      ++||+++. .|+..+..
T Consensus        85 ~~sf~~~~~~~~~~~~~  101 (174)
T cd01871          85 PASFENVRAKWYPEVRH  101 (174)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999996 58877654

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>PLN00023 GTP-binding protein; Provisional

Probab=99.79  E-value=2.4e-19  Score=123.54  Aligned_cols=82  Identities=15%  Similarity=0.318  Sum_probs=70.8

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--EEe---------------cCcEEEEEEeeCCCCccce------
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KIT---------------KGNVTIKVWDIGGQPRFRS------   75 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~~---------------~~~~~~~i~D~~G~~~~~~------   75 (101)
                      +.+|+.|||||||+++|+.+.|...+.||+|.++.  .+.               .+.+.++|||++|+++|+.      
T Consensus        25 VLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yy  104 (334)
T PLN00023         25 LVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFY  104 (334)
T ss_pred             EEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhhhHHhc
Confidence            44699999999999999999999899999997753  222               1458899999999999886      


Q ss_pred             ------EEEEECCChhhHHHHHHHHHHHHHh
Q psy2967          76 ------IYMVDAADTDKLEASRNELHALIEK  100 (101)
Q Consensus        76 ------i~v~d~~~~~sf~~~~~~~~~i~~~  100 (101)
                            |+|||+++++||+++..|++++.++
T Consensus       105 r~AdgiILVyDITdr~SFenL~kWl~eI~~~  135 (334)
T PLN00023        105 SQINGVIFVHDLSQRRTKTSLQKWASEVAAT  135 (334)
T ss_pred             cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence                  8999999999999999999998753

>KOG0393|consensus

Probab=99.79  E-value=6.7e-19  Score=113.75  Aligned_cols=86  Identities=14%  Similarity=0.239  Sum_probs=74.7

Q ss_pred             eeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEE---EEe-cCcEEEEEEeeCCCCccce------------EEEE
Q psy2967          16 TVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR---KIT-KGNVTIKVWDIGGQPRFRS------------IYMV   79 (101)
Q Consensus        16 ~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~---~~~-~~~~~~~i~D~~G~~~~~~------------i~v~   79 (101)
                      +.-..|||.+||||+|+..|..+.|++.|.||+-.++.   .++ ++.+.+.+|||+||+.|..            ++||
T Consensus         5 ~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cf   84 (198)
T KOG0393|consen    5 IKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCF   84 (198)
T ss_pred             eEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEE
Confidence            34455799999999999999999999999999986663   364 8889999999999998766            7889


Q ss_pred             ECCChhhHHHH-HHHHHHHHHhC
Q psy2967          80 DAADTDKLEAS-RNELHALIEKL  101 (101)
Q Consensus        80 d~~~~~sf~~~-~~~~~~i~~~l  101 (101)
                      ++.+++||+++ .+|+.|+..++
T Consensus        85 sv~~p~S~~nv~~kW~pEi~~~c  107 (198)
T KOG0393|consen   85 SVVSPESFENVKSKWIPEIKHHC  107 (198)
T ss_pred             EcCChhhHHHHHhhhhHHHHhhC
Confidence            99999999998 57999998764

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.79  E-value=2.2e-19  Score=112.06  Aligned_cols=81  Identities=22%  Similarity=0.452  Sum_probs=70.3

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      .+|+++||||||++++.++++...+.||++.++.  .  +.+..+.+.+||++|++++..            |+|||+++
T Consensus         5 ~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~   84 (168)
T cd04119           5 SMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTD   84 (168)
T ss_pred             EECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCC
Confidence            4699999999999999999999999999997763  2  345678999999999986554            99999999


Q ss_pred             hhhHHHHHHHHHHHHHh
Q psy2967          84 TDKLEASRNELHALIEK  100 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~~  100 (101)
                      +++|+++..|+.++.+.
T Consensus        85 ~~s~~~~~~~~~~~~~~  101 (168)
T cd04119          85 RQSFEALDSWLKEMKQE  101 (168)
T ss_pred             HHHHHhHHHHHHHHHHh
Confidence            99999999999988653

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.79  E-value=1.3e-19  Score=116.03  Aligned_cols=81  Identities=33%  Similarity=0.635  Sum_probs=71.5

Q ss_pred             eeEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChh
Q psy2967          18 GFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTD   85 (101)
Q Consensus        18 g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~   85 (101)
                      -+.+|+++||||||++++..+++. .+.||++.++..++..++.+++||++|+++++.            |+|||+++++
T Consensus        20 i~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~   98 (181)
T PLN00223         20 ILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD   98 (181)
T ss_pred             EEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHH
Confidence            344699999999999999988887 578999998888888899999999999988765            9999999999


Q ss_pred             hHHHHHHHHHHHHH
Q psy2967          86 KLEASRNELHALIE   99 (101)
Q Consensus        86 sf~~~~~~~~~i~~   99 (101)
                      +|+++..|+.++++
T Consensus        99 s~~~~~~~l~~~l~  112 (181)
T PLN00223         99 RVVEARDELHRMLN  112 (181)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999988887754

>cd04175 Rap1 Rap1 subgroup

Probab=99.79  E-value=2.3e-19  Score=112.37  Aligned_cols=81  Identities=11%  Similarity=0.226  Sum_probs=69.8

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE-E--EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR-K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      +.+|++|||||||++++..+.+.+.+.||++..+. .  +.+..+.+.+||++|+++++.            ++|||+++
T Consensus         5 ~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~   84 (164)
T cd04175           5 VVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITA   84 (164)
T ss_pred             EEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCC
Confidence            34699999999999999999998889999986553 2  445578899999999998776            99999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      +++|+++.+|+.++.+
T Consensus        85 ~~s~~~~~~~~~~i~~  100 (164)
T cd04175          85 QSTFNDLQDLREQILR  100 (164)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998875

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04134 Rho3 Rho3 subfamily

Probab=99.79  E-value=3.1e-19  Score=114.81  Aligned_cols=81  Identities=23%  Similarity=0.315  Sum_probs=69.2

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      .+|++|||||||+++|..+.|...+.||++.++..   +++..+.+.+||++|+++++.            ++|||++++
T Consensus         5 ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~   84 (189)
T cd04134           5 VLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSP   84 (189)
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEECCCH
Confidence            46999999999999999999998899999876642   455668999999999988755            889999999


Q ss_pred             hhHHHHH-HHHHHHHHh
Q psy2967          85 DKLEASR-NELHALIEK  100 (101)
Q Consensus        85 ~sf~~~~-~~~~~i~~~  100 (101)
                      +||+++. .|+.++..+
T Consensus        85 ~sf~~~~~~~~~~i~~~  101 (189)
T cd04134          85 DSLENVESKWLGEIREH  101 (189)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            9999996 598887653

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01865 Rab3 Rab3 subfamily

Probab=99.79  E-value=2.3e-19  Score=112.77  Aligned_cols=80  Identities=20%  Similarity=0.447  Sum_probs=68.8

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEE--EE--ecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KI--TKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      .+|++|||||||++++.+++|...+.||++.++.  .+  .+..+.+.+||++|+++++.            ++|||+++
T Consensus         6 i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~   85 (165)
T cd01865           6 IIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN   85 (165)
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCC
Confidence            3699999999999999999998889999986653  33  34568999999999987765            89999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      +++|+++..|+.++.+
T Consensus        86 ~~s~~~~~~~~~~i~~  101 (165)
T cd01865          86 EESFNAVQDWSTQIKT  101 (165)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998764

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04144 Ras2 Ras2 subfamily

Probab=99.79  E-value=1.9e-19  Score=115.86  Aligned_cols=80  Identities=15%  Similarity=0.184  Sum_probs=69.0

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      .+|++|||||||+++|..+.|...+.||++..+..   +++..+.+++||++|+++++.            |+|||++++
T Consensus         4 ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~   83 (190)
T cd04144           4 VLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSR   83 (190)
T ss_pred             EECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCH
Confidence            46999999999999999999998899999865532   445568899999999998775            899999999


Q ss_pred             hhHHHHHHHHHHHHH
Q psy2967          85 DKLEASRNELHALIE   99 (101)
Q Consensus        85 ~sf~~~~~~~~~i~~   99 (101)
                      +||+++..|+.++.+
T Consensus        84 ~s~~~~~~~~~~i~~   98 (190)
T cd04144          84 STFERVERFREQIQR   98 (190)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988764

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.79  E-value=5.1e-19  Score=111.17  Aligned_cols=80  Identities=18%  Similarity=0.264  Sum_probs=65.4

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE--EecCcEEEEEEeeCCCCccce-------EEEEECCChhhHHHH
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK--ITKGNVTIKVWDIGGQPRFRS-------IYMVDAADTDKLEAS   90 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~i~D~~G~~~~~~-------i~v~d~~~~~sf~~~   90 (101)
                      .+|++|||||||+.+|..+.|.+.+.|+.+.....  +++..+.+.+||++|++....       ++|||++|++||+++
T Consensus         5 vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~~~~~~~~~~~ilv~d~~~~~sf~~~   84 (158)
T cd04103           5 IVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPDAQFASWVDAVIFVFSLENEASFQTV   84 (158)
T ss_pred             EECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCchhHHhcCCEEEEEEECCCHHHHHHH
Confidence            46999999999999999999987777765543333  445568899999999975322       999999999999999


Q ss_pred             HHHHHHHHH
Q psy2967          91 RNELHALIE   99 (101)
Q Consensus        91 ~~~~~~i~~   99 (101)
                      ..|+.++..
T Consensus        85 ~~~~~~i~~   93 (158)
T cd04103          85 YNLYHQLSS   93 (158)
T ss_pred             HHHHHHHHH
Confidence            999998864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.79  E-value=4.3e-19  Score=112.04  Aligned_cols=82  Identities=23%  Similarity=0.442  Sum_probs=70.7

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEEE----ecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|++|||||||++++..+.+...+.||++.++...    ..+.+.+.+||++|++++..            |+|||++
T Consensus         4 ~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~   83 (166)
T cd00877           4 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVT   83 (166)
T ss_pred             EEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECC
Confidence            3469999999999999999999888999999776542    34568999999999987665            8999999


Q ss_pred             ChhhHHHHHHHHHHHHHh
Q psy2967          83 DTDKLEASRNELHALIEK  100 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~~  100 (101)
                      +++||+++..|++++.+.
T Consensus        84 ~~~s~~~~~~~~~~i~~~  101 (166)
T cd00877          84 SRVTYKNVPNWHRDLVRV  101 (166)
T ss_pred             CHHHHHHHHHHHHHHHHh
Confidence            999999999999988653

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.79  E-value=3.3e-19  Score=111.84  Aligned_cols=79  Identities=32%  Similarity=0.636  Sum_probs=70.1

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKL   87 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf   87 (101)
                      .+|+++||||||++++..+++. .+.||+|+++..+....+.+.+||++|+++++.            |+|||++++.+|
T Consensus         5 ~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~   83 (159)
T cd04150           5 MVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERI   83 (159)
T ss_pred             EECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHH
Confidence            3599999999999999988887 589999988877777889999999999987664            999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2967          88 EASRNELHALIE   99 (101)
Q Consensus        88 ~~~~~~~~~i~~   99 (101)
                      +++.+|+.+++.
T Consensus        84 ~~~~~~~~~~~~   95 (159)
T cd04150          84 GEAREELQRMLN   95 (159)
T ss_pred             HHHHHHHHHHHh
Confidence            999998887764

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.78  E-value=1.9e-19  Score=115.43  Aligned_cols=80  Identities=30%  Similarity=0.611  Sum_probs=70.3

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhh
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDK   86 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~s   86 (101)
                      +.+|+++||||||++++..+.+.. +.||++.++..++..++.+.+||++|+++++.            |+|||++++++
T Consensus        21 ~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s   99 (182)
T PTZ00133         21 LMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRER   99 (182)
T ss_pred             EEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHH
Confidence            335999999999999999888874 78999988877888889999999999987765            99999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy2967          87 LEASRNELHALIE   99 (101)
Q Consensus        87 f~~~~~~~~~i~~   99 (101)
                      |+++..|+.++++
T Consensus       100 ~~~~~~~l~~~~~  112 (182)
T PTZ00133        100 IGDAREELERMLS  112 (182)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999988887754

>cd04110 Rab35 Rab35 subfamily

Probab=99.78  E-value=3.7e-19  Score=115.30  Aligned_cols=81  Identities=21%  Similarity=0.434  Sum_probs=69.5

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--EE--ecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KI--TKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|++|||||||+++|..+.+...+.||++.++.  .+  .+..+.+.+||++|+++++.            ++|||++
T Consensus        10 vvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~   89 (199)
T cd04110          10 LIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVT   89 (199)
T ss_pred             EEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECC
Confidence            34699999999999999999998889999987653  33  34568899999999988765            9999999


Q ss_pred             ChhhHHHHHHHHHHHHH
Q psy2967          83 DTDKLEASRNELHALIE   99 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~   99 (101)
                      +++||+++..|+.++..
T Consensus        90 ~~~s~~~~~~~~~~i~~  106 (199)
T cd04110          90 NGESFVNVKRWLQEIEQ  106 (199)
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999999999998765

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.78  E-value=5.2e-19  Score=110.99  Aligned_cols=80  Identities=20%  Similarity=0.443  Sum_probs=68.5

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEE--EE--ecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KI--TKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      .+|++|||||||++++..+.+...+.||++.++.  .+  .+..+.+.+||++|++++..            |+|||+++
T Consensus         7 i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   86 (166)
T cd01869           7 LIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTD   86 (166)
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcC
Confidence            3699999999999999999998888999986653  23  34568899999999988765            99999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      ++||+++..|+.++.+
T Consensus        87 ~~s~~~l~~~~~~~~~  102 (166)
T cd01869          87 QESFNNVKQWLQEIDR  102 (166)
T ss_pred             HHHHHhHHHHHHHHHH
Confidence            9999999999988754

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04127 Rab27A Rab27a subfamily

Probab=99.78  E-value=5.6e-19  Score=112.13  Aligned_cols=80  Identities=24%  Similarity=0.470  Sum_probs=69.4

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE--Ee------------cCcEEEEEEeeCCCCccce----------
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK--IT------------KGNVTIKVWDIGGQPRFRS----------   75 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~--~~------------~~~~~~~i~D~~G~~~~~~----------   75 (101)
                      .+|++|||||||++++..+.+...+.||++.++..  +.            ...+.+.+||++|+++++.          
T Consensus         9 ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   88 (180)
T cd04127           9 ALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAFFRDAM   88 (180)
T ss_pred             EECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHHhCCCC
Confidence            46999999999999999999999999999977642  22            3458999999999998765          


Q ss_pred             --EEEEECCChhhHHHHHHHHHHHHH
Q psy2967          76 --IYMVDAADTDKLEASRNELHALIE   99 (101)
Q Consensus        76 --i~v~d~~~~~sf~~~~~~~~~i~~   99 (101)
                        ++|||+++++||.++..|+.++..
T Consensus        89 ~~i~v~d~~~~~s~~~~~~~~~~i~~  114 (180)
T cd04127          89 GFLLIFDLTNEQSFLNVRNWMSQLQT  114 (180)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHH
Confidence              999999999999999999998865

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.78  E-value=6.2e-19  Score=111.26  Aligned_cols=80  Identities=16%  Similarity=0.265  Sum_probs=68.3

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      .+|++|||||||+++|..+.|...+.||++..+..   +++..+.+.+||++|+++++.            |+|||++++
T Consensus         3 i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~   82 (174)
T smart00174        3 VVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSP   82 (174)
T ss_pred             EECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCH
Confidence            46999999999999999999998899998766532   445568899999999998754            899999999


Q ss_pred             hhHHHHH-HHHHHHHH
Q psy2967          85 DKLEASR-NELHALIE   99 (101)
Q Consensus        85 ~sf~~~~-~~~~~i~~   99 (101)
                      +||+++. .|+..+.+
T Consensus        83 ~s~~~~~~~~~~~i~~   98 (174)
T smart00174       83 ASFENVKEKWYPEVKH   98 (174)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999996 59888765

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04149 Arf6 Arf6 subfamily

Probab=99.78  E-value=4.7e-19  Score=112.14  Aligned_cols=80  Identities=41%  Similarity=0.698  Sum_probs=70.2

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhh
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDK   86 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~s   86 (101)
                      +.+|+++||||||++++..+++. .+.||++.++..+....+.+++||++|+++++.            |+|||++++.+
T Consensus        13 ~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s   91 (168)
T cd04149          13 LMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDR   91 (168)
T ss_pred             EEECcCCCCHHHHHHHHccCCCc-cccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhh
Confidence            34699999999999999988886 578999988877777889999999999988765            99999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy2967          87 LEASRNELHALIE   99 (101)
Q Consensus        87 f~~~~~~~~~i~~   99 (101)
                      |+++..|+.++++
T Consensus        92 ~~~~~~~~~~~~~  104 (168)
T cd04149          92 IDEARQELHRIIN  104 (168)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999887764

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04176 Rap2 Rap2 subgroup

Probab=99.78  E-value=6.6e-19  Score=110.12  Aligned_cols=80  Identities=14%  Similarity=0.230  Sum_probs=68.0

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEE-EE--EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM-RK--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~-~~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      .+|++|||||||++++..+.+.+.+.||++..+ ..  +++..+.+++||++|+++++.            ++|||++++
T Consensus         6 i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~   85 (163)
T cd04176           6 VLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQ   85 (163)
T ss_pred             EECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCH
Confidence            359999999999999999999988889886333 22  455568899999999998877            889999999


Q ss_pred             hhHHHHHHHHHHHHH
Q psy2967          85 DKLEASRNELHALIE   99 (101)
Q Consensus        85 ~sf~~~~~~~~~i~~   99 (101)
                      +||+++..|+.++.+
T Consensus        86 ~s~~~~~~~~~~~~~  100 (163)
T cd04176          86 QTFQDIKPMRDQIVR  100 (163)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999888764

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04124 RabL2 RabL2 subfamily

Probab=99.78  E-value=7.5e-19  Score=110.21  Aligned_cols=80  Identities=18%  Similarity=0.294  Sum_probs=69.0

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEE----EEecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      .+|++|||||||++++..+.+.+.+.+|.+..+.    .+++..+.+.+||++|+++++.            |+|||+++
T Consensus         5 vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~   84 (161)
T cd04124           5 LLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTR   84 (161)
T ss_pred             EECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCC
Confidence            4699999999999999999998888888776543    2456678999999999998766            99999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      +.+|+++..|+.++.+
T Consensus        85 ~~s~~~~~~~~~~i~~  100 (161)
T cd04124          85 KITYKNLSKWYEELRE  100 (161)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988865

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04109 Rab28 Rab28 subfamily

Probab=99.78  E-value=6.6e-19  Score=115.38  Aligned_cols=81  Identities=21%  Similarity=0.328  Sum_probs=69.4

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEE--EEe--c-CcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KIT--K-GNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~~--~-~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      .+|++|||||||+++|.++.|...+.||++.++.  .+.  . ..+.+.+||++|++.++.            |+|||++
T Consensus         5 ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t   84 (215)
T cd04109           5 VLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVT   84 (215)
T ss_pred             EECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECC
Confidence            4699999999999999999999999999997763  232  2 468999999999986554            8999999


Q ss_pred             ChhhHHHHHHHHHHHHHh
Q psy2967          83 DTDKLEASRNELHALIEK  100 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~~  100 (101)
                      +++||+++..|+.++.+.
T Consensus        85 ~~~s~~~~~~w~~~l~~~  102 (215)
T cd04109          85 NSQSFENLEDWYSMVRKV  102 (215)
T ss_pred             CHHHHHHHHHHHHHHHHh
Confidence            999999999999988653

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04126 Rab20 Rab20 subfamily

Probab=99.78  E-value=9.4e-19  Score=115.47  Aligned_cols=79  Identities=20%  Similarity=0.397  Sum_probs=69.6

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKL   87 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf   87 (101)
                      .+|+++||||||+++|..++|.+ +.||++..+.......+.+.+||++|+++++.            |+|||+++++||
T Consensus         5 ivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf   83 (220)
T cd04126           5 LLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSL   83 (220)
T ss_pred             EECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHH
Confidence            46999999999999999999974 78999987766556778999999999998876            999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2967          88 EASRNELHALIE   99 (101)
Q Consensus        88 ~~~~~~~~~i~~   99 (101)
                      +++..|+..+.+
T Consensus        84 ~~l~~~~~~l~~   95 (220)
T cd04126          84 EELEDRFLGLTD   95 (220)
T ss_pred             HHHHHHHHHHHH
Confidence            999998887764

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04158 ARD1 ARD1 subfamily

Probab=99.77  E-value=9.1e-19  Score=110.67  Aligned_cols=79  Identities=28%  Similarity=0.598  Sum_probs=70.6

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKL   87 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf   87 (101)
                      .+|+++||||||++++..+.+. .+.||++.++..++..++.+.+||++|+++++.            ++|||++++++|
T Consensus         4 lvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~   82 (169)
T cd04158           4 TLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRV   82 (169)
T ss_pred             EECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHH
Confidence            4689999999999999998876 489999988877888899999999999987654            999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2967          88 EASRNELHALIE   99 (101)
Q Consensus        88 ~~~~~~~~~i~~   99 (101)
                      +++..|+.++++
T Consensus        83 ~~~~~~~~~~~~   94 (169)
T cd04158          83 SEAHSELAKLLT   94 (169)
T ss_pred             HHHHHHHHHHhc
Confidence            999999988864

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.77  E-value=5.1e-19  Score=118.45  Aligned_cols=80  Identities=18%  Similarity=0.265  Sum_probs=68.1

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEE-EE--EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM-RK--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~-~~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      .+|++|||||||+++|+.++|...+.||++..+ ..  +.+..+.++|||++|++.|+.            |+|||++++
T Consensus         5 vlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~   84 (247)
T cd04143           5 VLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNR   84 (247)
T ss_pred             EECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCH
Confidence            469999999999999999999988999997322 22  445568999999999987654            899999999


Q ss_pred             hhHHHHHHHHHHHHH
Q psy2967          85 DKLEASRNELHALIE   99 (101)
Q Consensus        85 ~sf~~~~~~~~~i~~   99 (101)
                      +||+++..|+.++.+
T Consensus        85 ~Sf~~i~~~~~~I~~   99 (247)
T cd04143          85 ESFEEVCRLREQILE   99 (247)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998864

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04116 Rab9 Rab9 subfamily

Probab=99.77  E-value=8.9e-19  Score=110.28  Aligned_cols=82  Identities=21%  Similarity=0.372  Sum_probs=70.4

Q ss_pred             eeEeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEEC
Q psy2967          18 GFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDA   81 (101)
Q Consensus        18 g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~   81 (101)
                      -+.+|+++||||||++++..+.+.+.+.+|++.++.  .  +++..+.+.+||++|+++++.            ++|||+
T Consensus         8 i~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   87 (170)
T cd04116           8 VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAV   87 (170)
T ss_pred             EEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEEC
Confidence            344699999999999999999999888899987653  2  456678999999999998755            889999


Q ss_pred             CChhhHHHHHHHHHHHHH
Q psy2967          82 ADTDKLEASRNELHALIE   99 (101)
Q Consensus        82 ~~~~sf~~~~~~~~~i~~   99 (101)
                      ++++||+.+..|+.++++
T Consensus        88 ~~~~s~~~~~~~~~~~~~  105 (170)
T cd04116          88 DDSQSFQNLSNWKKEFIY  105 (170)
T ss_pred             CCHHHHHhHHHHHHHHHH
Confidence            999999999999988765

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.77  E-value=8.2e-19  Score=108.93  Aligned_cols=80  Identities=14%  Similarity=0.204  Sum_probs=68.7

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      .+|++|||||||++++..+.+...+.||.+..+..   +++..+.+.+||++|+++++.            ++|||++++
T Consensus         6 iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~   85 (162)
T cd04138           6 VVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSR   85 (162)
T ss_pred             EECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCH
Confidence            46999999999999999999988899998865532   445567899999999998765            899999999


Q ss_pred             hhHHHHHHHHHHHHH
Q psy2967          85 DKLEASRNELHALIE   99 (101)
Q Consensus        85 ~sf~~~~~~~~~i~~   99 (101)
                      .+|+++..|+.++.+
T Consensus        86 ~s~~~~~~~~~~i~~  100 (162)
T cd04138          86 KSFEDIHTYREQIKR  100 (162)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988765

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.77  E-value=8.7e-19  Score=110.32  Aligned_cols=80  Identities=25%  Similarity=0.476  Sum_probs=69.4

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEE--EE--ecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KI--TKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      .+|++|||||||++++..+.|...+.||++.++.  .+  .+..+.+.+||++|++++..            ++|||+++
T Consensus         8 vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~   87 (167)
T cd01867           8 LIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITD   87 (167)
T ss_pred             EECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcC
Confidence            4699999999999999999999999999987653  23  44558999999999987665            99999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      +++|+++..|+.++.+
T Consensus        88 ~~s~~~~~~~~~~i~~  103 (167)
T cd01867          88 EKSFENIRNWMRNIEE  103 (167)
T ss_pred             HHHHHhHHHHHHHHHH
Confidence            9999999999998765

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04111 Rab39 Rab39 subfamily

Probab=99.77  E-value=1.6e-18  Score=113.43  Aligned_cols=82  Identities=24%  Similarity=0.433  Sum_probs=70.0

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE--E---ecCcEEEEEEeeCCCCccce------------EEEEEC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK--I---TKGNVTIKVWDIGGQPRFRS------------IYMVDA   81 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~--~---~~~~~~~~i~D~~G~~~~~~------------i~v~d~   81 (101)
                      +.+|++|||||||++++..+.+...+.||++.++..  +   .+..+.+++||++|++++..            ++|||+
T Consensus         6 vvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~   85 (211)
T cd04111           6 IVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDI   85 (211)
T ss_pred             EEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEEC
Confidence            346999999999999999999988889999876632  3   24468999999999988765            899999


Q ss_pred             CChhhHHHHHHHHHHHHHh
Q psy2967          82 ADTDKLEASRNELHALIEK  100 (101)
Q Consensus        82 ~~~~sf~~~~~~~~~i~~~  100 (101)
                      ++++||+++..|+.++.+.
T Consensus        86 ~~~~Sf~~l~~~~~~i~~~  104 (211)
T cd04111          86 TNRESFEHVHDWLEEARSH  104 (211)
T ss_pred             CCHHHHHHHHHHHHHHHHh
Confidence            9999999999999988753

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.77  E-value=1.7e-18  Score=107.97  Aligned_cols=80  Identities=20%  Similarity=0.381  Sum_probs=69.6

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE----Ee--cCcEEEEEEeeCCCCccce------------EEEEEC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----IT--KGNVTIKVWDIGGQPRFRS------------IYMVDA   81 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~--~~~~~~~i~D~~G~~~~~~------------i~v~d~   81 (101)
                      .+|++++|||||++++..+.+.+.+.||++.++..    +.  ...+.+++||++|+++++.            ++|||+
T Consensus         5 ~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~   84 (162)
T cd04106           5 VVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFST   84 (162)
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEEC
Confidence            46999999999999999999998999999987632    33  5578999999999987766            999999


Q ss_pred             CChhhHHHHHHHHHHHHH
Q psy2967          82 ADTDKLEASRNELHALIE   99 (101)
Q Consensus        82 ~~~~sf~~~~~~~~~i~~   99 (101)
                      +++++|+++..|+.++.+
T Consensus        85 ~~~~s~~~l~~~~~~~~~  102 (162)
T cd04106          85 TDRESFEAIESWKEKVEA  102 (162)
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            999999999999988754

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.76  E-value=1.5e-18  Score=109.59  Aligned_cols=81  Identities=19%  Similarity=0.411  Sum_probs=69.7

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce-------------EEEEECC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS-------------IYMVDAA   82 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~-------------i~v~d~~   82 (101)
                      .+|++|||||||++++..+.+...+.+|++.++..    +.+..+.+.+||++|+++++.             ++|||++
T Consensus         7 vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~   86 (170)
T cd04115           7 VIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVT   86 (170)
T ss_pred             EECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECC
Confidence            36999999999999999999998899999876642    445668999999999987752             9999999


Q ss_pred             ChhhHHHHHHHHHHHHHh
Q psy2967          83 DTDKLEASRNELHALIEK  100 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~~  100 (101)
                      ++++|+.+..|+.++...
T Consensus        87 ~~~s~~~~~~~~~~~~~~  104 (170)
T cd04115          87 NMASFHSLPSWIEECEQH  104 (170)
T ss_pred             CHHHHHhHHHHHHHHHHh
Confidence            999999999999887653

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.76  E-value=1.1e-18  Score=110.31  Aligned_cols=79  Identities=24%  Similarity=0.517  Sum_probs=70.2

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKL   87 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf   87 (101)
                      .+|+++||||||++++.++ +...+.||+|.....+..+++.+.+||++|+++++.            |+|||.+++.+|
T Consensus         4 ~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~   82 (167)
T cd04161           4 TVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRV   82 (167)
T ss_pred             EECCCCCCHHHHHHHHhCC-CCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHH
Confidence            4689999999999999966 777899999988777888899999999999987664            899999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2967          88 EASRNELHALIE   99 (101)
Q Consensus        88 ~~~~~~~~~i~~   99 (101)
                      ++++.|+.++++
T Consensus        83 ~~~~~~l~~l~~   94 (167)
T cd04161          83 QEVKEILRELLQ   94 (167)
T ss_pred             HHHHHHHHHHHc
Confidence            999999998864

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04125 RabA_like RabA-like subfamily

Probab=99.76  E-value=1.3e-18  Score=111.47  Aligned_cols=80  Identities=21%  Similarity=0.437  Sum_probs=69.0

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      .+|+++||||||+++|..+.|...+.||++.++.  .  +.+..+.+.+||++|+++++.            ++|||+++
T Consensus         5 v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~   84 (188)
T cd04125           5 IIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTD   84 (188)
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcC
Confidence            4699999999999999999998889999986653  2  345568999999999988764            99999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      +++|+++..|+.++..
T Consensus        85 ~~s~~~i~~~~~~i~~  100 (188)
T cd04125          85 QESFENLKFWINEINR  100 (188)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988764

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01866 Rab2 Rab2 subfamily

Probab=99.76  E-value=1.6e-18  Score=109.30  Aligned_cols=80  Identities=18%  Similarity=0.289  Sum_probs=68.7

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      .+|+++||||||++++..+.+...+.+|.+.++..    +.+..+.+.+||++|++++..            ++|||+++
T Consensus         9 vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~   88 (168)
T cd01866           9 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR   88 (168)
T ss_pred             EECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCC
Confidence            46999999999999999999988888888876532    445568999999999987655            99999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      ++||+++..|+.++.+
T Consensus        89 ~~s~~~~~~~~~~~~~  104 (168)
T cd01866          89 RETFNHLTSWLEDARQ  104 (168)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998865

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04140 ARHI_like ARHI subfamily

Probab=99.76  E-value=2.2e-18  Score=108.29  Aligned_cols=80  Identities=20%  Similarity=0.284  Sum_probs=68.4

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      .+|++|||||||++++..+.|...+.||++..+..   ...+.+.+.+||++|+++++.            |+|||++++
T Consensus         6 ~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~   85 (165)
T cd04140           6 VFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSK   85 (165)
T ss_pred             EECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCH
Confidence            46999999999999999999988889998865543   345668999999999988765            999999999


Q ss_pred             hhHHHHHHHHHHHHH
Q psy2967          85 DKLEASRNELHALIE   99 (101)
Q Consensus        85 ~sf~~~~~~~~~i~~   99 (101)
                      ++|++++.|+..+.+
T Consensus        86 ~s~~~~~~~~~~i~~  100 (165)
T cd04140          86 QSLEELKPIYELICE  100 (165)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999876654

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.76  E-value=2.4e-18  Score=107.33  Aligned_cols=83  Identities=16%  Similarity=0.197  Sum_probs=70.0

Q ss_pred             eeeE-eccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEE
Q psy2967          17 VGFN-MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVD   80 (101)
Q Consensus        17 ~g~~-vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d   80 (101)
                      +.+. +|++|||||||++++..+.+...+.||.+..+..   +++..+.+.+||++|++++..            ++|||
T Consensus         3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d   82 (164)
T cd04145           3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFS   82 (164)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence            3444 5999999999999999999988888998855432   455568899999999988766            99999


Q ss_pred             CCChhhHHHHHHHHHHHHH
Q psy2967          81 AADTDKLEASRNELHALIE   99 (101)
Q Consensus        81 ~~~~~sf~~~~~~~~~i~~   99 (101)
                      ++++++|+++..|+.++.+
T Consensus        83 ~~~~~s~~~~~~~~~~~~~  101 (164)
T cd04145          83 VTDRGSFEEVDKFHTQILR  101 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHH
Confidence            9999999999999988764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd01868 Rab11_like Rab11-like

Probab=99.76  E-value=2.1e-18  Score=108.05  Aligned_cols=81  Identities=20%  Similarity=0.384  Sum_probs=69.1

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE--E--ecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK--I--TKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      .+|+++||||||++++..+.+...+.||.+.++..  +  .+..+.+.+||++|++++..            |+|||+++
T Consensus         8 vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   87 (165)
T cd01868           8 LIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK   87 (165)
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcC
Confidence            46999999999999999999988889999876532  3  34457899999999987655            89999999


Q ss_pred             hhhHHHHHHHHHHHHHh
Q psy2967          84 TDKLEASRNELHALIEK  100 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~~  100 (101)
                      +++|+++.+|+.++.+.
T Consensus        88 ~~s~~~~~~~~~~~~~~  104 (165)
T cd01868          88 KQTFENVERWLKELRDH  104 (165)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999988653

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd01864 Rab19 Rab19 subfamily

Probab=99.75  E-value=1.7e-18  Score=108.63  Aligned_cols=80  Identities=23%  Similarity=0.400  Sum_probs=67.9

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEE--EEEe--cCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM--RKIT--KGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~--~~~~--~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      .+|++|||||||++++..+.+.+.+.+|.+.++  ..+.  +..+.+.+||++|+++++.            ++|||+++
T Consensus         8 vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~   87 (165)
T cd01864           8 LIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITR   87 (165)
T ss_pred             EECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcC
Confidence            359999999999999999999988889988654  3333  4447899999999987655            89999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      +++|+++..|+.++..
T Consensus        88 ~~s~~~~~~~~~~i~~  103 (165)
T cd01864          88 RSSFESVPHWIEEVEK  103 (165)
T ss_pred             HHHHHhHHHHHHHHHH
Confidence            9999999999998865

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PLN03110 Rab GTPase; Provisional

Probab=99.75  E-value=3.4e-18  Score=112.25  Aligned_cols=82  Identities=18%  Similarity=0.349  Sum_probs=70.6

Q ss_pred             eeEeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEEC
Q psy2967          18 GFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDA   81 (101)
Q Consensus        18 g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~   81 (101)
                      -+.+|++|||||||+++|..+.+...+.||++.++.  .  +.+..+.+++||++|+++++.            |+|||+
T Consensus        15 i~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~   94 (216)
T PLN03110         15 IVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI   94 (216)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEEC
Confidence            334699999999999999999998889999997763  2  445568999999999998766            899999


Q ss_pred             CChhhHHHHHHHHHHHHH
Q psy2967          82 ADTDKLEASRNELHALIE   99 (101)
Q Consensus        82 ~~~~sf~~~~~~~~~i~~   99 (101)
                      +++++|+++..|+..+.+
T Consensus        95 ~~~~s~~~~~~~~~~~~~  112 (216)
T PLN03110         95 TKRQTFDNVQRWLRELRD  112 (216)
T ss_pred             CChHHHHHHHHHHHHHHH
Confidence            999999999999988765

>cd04157 Arl6 Arl6 subfamily

Probab=99.75  E-value=2.4e-18  Score=107.16  Aligned_cols=80  Identities=31%  Similarity=0.547  Sum_probs=69.6

Q ss_pred             EeccCCCcceeeeeccccCc-CCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhh
Q psy2967          20 NMRKITKGNVTIWPVPLSGQ-FSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDK   86 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~s   86 (101)
                      .+|+++||||||++++..+. +...+.||++.....+...++.+.+||++|+++++.            |+|+|.+++.+
T Consensus         4 ~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~   83 (162)
T cd04157           4 VVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLR   83 (162)
T ss_pred             EECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHH
Confidence            46999999999999999876 466788999987777777889999999999988765            89999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy2967          87 LEASRNELHALIE   99 (101)
Q Consensus        87 f~~~~~~~~~i~~   99 (101)
                      |..+..|+.++++
T Consensus        84 ~~~~~~~~~~~~~   96 (162)
T cd04157          84 LVVVKDELELLLN   96 (162)
T ss_pred             HHHHHHHHHHHHc
Confidence            9999999887754

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04118 Rab24 Rab24 subfamily

Probab=99.75  E-value=3.1e-18  Score=110.05  Aligned_cols=80  Identities=20%  Similarity=0.345  Sum_probs=67.8

Q ss_pred             EeccCCCcceeeeeccccCcCCC-CCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQ-DMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~-~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      .+|+++||||||+++|..+.|.. .+.||++..+.  .  +.+..+.+.+||++|+++++.            ++|||++
T Consensus         5 vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~   84 (193)
T cd04118           5 MLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLT   84 (193)
T ss_pred             EECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECC
Confidence            46999999999999999999875 68899986652  2  445568899999999987754            9999999


Q ss_pred             ChhhHHHHHHHHHHHHH
Q psy2967          83 DTDKLEASRNELHALIE   99 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~   99 (101)
                      ++.+|+++..|+.++.+
T Consensus        85 ~~~s~~~~~~~~~~i~~  101 (193)
T cd04118          85 DSSSFERAKFWVKELQN  101 (193)
T ss_pred             CHHHHHHHHHHHHHHHh
Confidence            99999999999988764

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>KOG0071|consensus

Probab=99.75  E-value=4.8e-18  Score=104.22  Aligned_cols=85  Identities=44%  Similarity=0.733  Sum_probs=75.5

Q ss_pred             ccccceeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEE
Q psy2967          11 QDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYM   78 (101)
Q Consensus        11 ~~~~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v   78 (101)
                      ++.+.++|+.    ++||||+++++.-++.. ...||+|++++.+.++++++.+||.+||++.|.            |||
T Consensus        17 E~~ilmlGLd----~aGKTtiLyKLkl~~~~-~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV   91 (180)
T KOG0071|consen   17 EMRILMLGLD----AAGKTTILYKLKLGQSV-TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   91 (180)
T ss_pred             cceEEEEecc----cCCceehhhHHhcCCCc-ccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence            3456666665    99999999999988866 789999999999999999999999999999887            999


Q ss_pred             EECCChhhHHHHHHHHHHHHHh
Q psy2967          79 VDAADTDKLEASRNELHALIEK  100 (101)
Q Consensus        79 ~d~~~~~sf~~~~~~~~~i~~~  100 (101)
                      .|..+++..++++..+..++++
T Consensus        92 ~Dsa~~dr~eeAr~ELh~ii~~  113 (180)
T KOG0071|consen   92 VDSADRDRIEEARNELHRIIND  113 (180)
T ss_pred             EeccchhhHHHHHHHHHHHhCC
Confidence            9999999999999999888753

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.75  E-value=4.1e-18  Score=108.90  Aligned_cols=80  Identities=18%  Similarity=0.282  Sum_probs=67.3

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE-E--e-cCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK-I--T-KGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~-~--~-~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|++|||||||+++|..+.+.+.+.||++.++.. +  . +..+.+.+||++|++++..            ++|||++
T Consensus         4 ~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~   83 (187)
T cd04132           4 VVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVD   83 (187)
T ss_pred             EEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECC
Confidence            346999999999999999999998999999877642 2  2 4568999999999987654            8999999


Q ss_pred             ChhhHHHHH-HHHHHHH
Q psy2967          83 DTDKLEASR-NELHALI   98 (101)
Q Consensus        83 ~~~sf~~~~-~~~~~i~   98 (101)
                      +++||+++. .|+.++.
T Consensus        84 ~~~s~~~~~~~~~~~~~  100 (187)
T cd04132          84 NPTSLDNVEDKWFPEVN  100 (187)
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            999999996 5887765

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.75  E-value=3.4e-18  Score=106.89  Aligned_cols=80  Identities=19%  Similarity=0.282  Sum_probs=68.2

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      .+|++|||||||++++.++.+...+.||++..+..   +.+..+.+.+||++|++++..            ++|||++++
T Consensus         5 v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~   84 (164)
T smart00173        5 VLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDR   84 (164)
T ss_pred             EECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCH
Confidence            36999999999999999999998888988744432   445568999999999998766            899999999


Q ss_pred             hhHHHHHHHHHHHHH
Q psy2967          85 DKLEASRNELHALIE   99 (101)
Q Consensus        85 ~sf~~~~~~~~~i~~   99 (101)
                      ++|+++..|...+.+
T Consensus        85 ~s~~~~~~~~~~i~~   99 (164)
T smart00173       85 QSFEEIKKFREQILR   99 (164)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999887764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd01892 Miro2 Miro2 subfamily

Probab=99.75  E-value=5.6e-18  Score=107.28  Aligned_cols=77  Identities=12%  Similarity=0.144  Sum_probs=66.2

Q ss_pred             eccCCCcceeeeeccccCcCC-CCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          21 MRKITKGNVTIWPVPLSGQFS-QDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~-~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      +|++|||||||+++|..+.|. ..|.||++..+.  .  +.+..+.+.+||++|++.++.            ++|||.++
T Consensus        10 vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~   89 (169)
T cd01892          10 LGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSD   89 (169)
T ss_pred             ECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCC
Confidence            599999999999999999998 889999986653  2  445568899999999987654            89999999


Q ss_pred             hhhHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHAL   97 (101)
Q Consensus        84 ~~sf~~~~~~~~~i   97 (101)
                      +++|+++..|+.++
T Consensus        90 ~~s~~~~~~~~~~~  103 (169)
T cd01892          90 PKSFSYCAEVYKKY  103 (169)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04112 Rab26 Rab26 subfamily

Probab=99.74  E-value=3.5e-18  Score=109.98  Aligned_cols=81  Identities=26%  Similarity=0.469  Sum_probs=68.5

Q ss_pred             EeccCCCcceeeeeccccCcCCC-CCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQ-DMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~-~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      .+|++|||||||++++..+.+.. .+.+|++.++..    +++..+.+.+||++|++++..            |+|||++
T Consensus         5 vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~   84 (191)
T cd04112           5 LLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDIT   84 (191)
T ss_pred             EECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECC
Confidence            46999999999999999998864 678888866532    445678999999999988765            9999999


Q ss_pred             ChhhHHHHHHHHHHHHHh
Q psy2967          83 DTDKLEASRNELHALIEK  100 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~~  100 (101)
                      ++++|+++..|+.++.+.
T Consensus        85 ~~~s~~~~~~~~~~i~~~  102 (191)
T cd04112          85 NKASFDNIRAWLTEIKEY  102 (191)
T ss_pred             CHHHHHHHHHHHHHHHHh
Confidence            999999999999888653

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04113 Rab4 Rab4 subfamily

Probab=99.74  E-value=3.9e-18  Score=106.44  Aligned_cols=80  Identities=23%  Similarity=0.386  Sum_probs=68.2

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      .+|+++||||||++++..+.+...+.+|.+.++..    +.+..+.+.+||++|++++..            ++|||+++
T Consensus         5 v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~   84 (161)
T cd04113           5 IIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITN   84 (161)
T ss_pred             EECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCC
Confidence            46999999999999999999988888888866542    445568999999999987655            99999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      +++|+++..|+.++..
T Consensus        85 ~~s~~~~~~~~~~~~~  100 (161)
T cd04113          85 RTSFEALPTWLSDARA  100 (161)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999987753

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.74  E-value=4.4e-18  Score=106.36  Aligned_cols=80  Identities=16%  Similarity=0.275  Sum_probs=67.8

Q ss_pred             EeccCCCcceeeeeccccC--cCCCCCCCccceEEEE--E---ecCcEEEEEEeeCCCCccce------------EEEEE
Q psy2967          20 NMRKITKGNVTIWPVPLSG--QFSQDMIPTVGFNMRK--I---TKGNVTIKVWDIGGQPRFRS------------IYMVD   80 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~--~~~~~~~~t~~~~~~~--~---~~~~~~~~i~D~~G~~~~~~------------i~v~d   80 (101)
                      .+|+++||||||++++..+  .+.+++.||+|.++..  +   ....+.+.+||++|++.++.            ++|||
T Consensus         5 vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d   84 (164)
T cd04101           5 VVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFILVYD   84 (164)
T ss_pred             EECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEE
Confidence            4699999999999999865  6888999999977632  2   24569999999999987655            99999


Q ss_pred             CCChhhHHHHHHHHHHHHH
Q psy2967          81 AADTDKLEASRNELHALIE   99 (101)
Q Consensus        81 ~~~~~sf~~~~~~~~~i~~   99 (101)
                      ++++++|+++..|+.++.+
T Consensus        85 ~~~~~s~~~~~~~~~~~~~  103 (164)
T cd04101          85 VSNKASFENCSRWVNKVRT  103 (164)
T ss_pred             CcCHHHHHHHHHHHHHHHH
Confidence            9999999999999988764

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>KOG0097|consensus

Probab=99.74  E-value=1.4e-18  Score=107.08  Aligned_cols=79  Identities=18%  Similarity=0.344  Sum_probs=71.9

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEE----EEecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      .+|+-|||||+|+++|.+.+|..+.+.|+|+.+-    ++.+..++++|||++||++|+.            +.|||++.
T Consensus        16 iigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditr   95 (215)
T KOG0097|consen   16 IIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR   95 (215)
T ss_pred             EEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehh
Confidence            3599999999999999999999999999998873    3678899999999999999988            99999999


Q ss_pred             hhhHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALI   98 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~   98 (101)
                      +.+++++..|+....
T Consensus        96 rstynhlsswl~dar  110 (215)
T KOG0097|consen   96 RSTYNHLSSWLTDAR  110 (215)
T ss_pred             hhhhhhHHHHHhhhh
Confidence            999999999997654

>cd04142 RRP22 RRP22 subfamily

Probab=99.74  E-value=5.4e-18  Score=110.13  Aligned_cols=80  Identities=18%  Similarity=0.280  Sum_probs=66.0

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCcc----------------ce----
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRF----------------RS----   75 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~----------------~~----   75 (101)
                      .+|++|||||||+++|..++|...+.||++.++.  .  +++..+.+.+||++|.+++                +.    
T Consensus         5 ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~i   84 (198)
T cd04142           5 VLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAF   84 (198)
T ss_pred             EECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEE
Confidence            4699999999999999999999889999875542  2  3455589999999886432                11    


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHH
Q psy2967          76 IYMVDAADTDKLEASRNELHALIE   99 (101)
Q Consensus        76 i~v~d~~~~~sf~~~~~~~~~i~~   99 (101)
                      |+|||+++++||+++..|++++.+
T Consensus        85 ilv~D~~~~~S~~~~~~~~~~i~~  108 (198)
T cd04142          85 ILVYDICSPDSFHYVKLLRQQILE  108 (198)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999988765

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.74  E-value=8.5e-18  Score=106.42  Aligned_cols=80  Identities=11%  Similarity=0.195  Sum_probs=66.5

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEE---EEecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      .+|++|||||||++++..+.|..++.||....+.   .+++..+.+.+||++|++++..            |+|||++++
T Consensus         5 i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~   84 (173)
T cd04130           5 LVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNP   84 (173)
T ss_pred             EECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCCH
Confidence            3699999999999999999999999998753332   2455568999999999987765            999999999


Q ss_pred             hhHHHHH-HHHHHHHH
Q psy2967          85 DKLEASR-NELHALIE   99 (101)
Q Consensus        85 ~sf~~~~-~~~~~i~~   99 (101)
                      +||+++. .|+.++..
T Consensus        85 ~sf~~~~~~~~~~~~~  100 (173)
T cd04130          85 SSFQNISEKWIPEIRK  100 (173)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999985 68887764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd01861 Rab6 Rab6 subfamily

Probab=99.73  E-value=6.4e-18  Score=105.24  Aligned_cols=80  Identities=19%  Similarity=0.420  Sum_probs=68.0

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE--E--ecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK--I--TKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      .+|+++||||||++++.+.++...+.|+.+.++..  +  .+..+.+.+||++|+++++.            ++|||+++
T Consensus         5 liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   84 (161)
T cd01861           5 FLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITN   84 (161)
T ss_pred             EECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcC
Confidence            46999999999999999999888888888876532  3  34457899999999988765            89999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      +++|+++..|+.++..
T Consensus        85 ~~s~~~~~~~~~~~~~  100 (161)
T cd01861          85 RQSFDNTDKWIDDVRD  100 (161)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998764

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>KOG0073|consensus

Probab=99.73  E-value=1.2e-17  Score=104.58  Aligned_cols=84  Identities=30%  Similarity=0.618  Sum_probs=74.5

Q ss_pred             ccccceeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEE
Q psy2967          11 QDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYM   78 (101)
Q Consensus        11 ~~~~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v   78 (101)
                      +.+++++|++    |+|||+++++|...+ .+...||.|++++++..+.+.+++||.+||...++            |+|
T Consensus        16 E~riLiLGLd----NsGKTti~~kl~~~~-~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwv   90 (185)
T KOG0073|consen   16 EVRILILGLD----NSGKTTIVKKLLGED-TDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWV   90 (185)
T ss_pred             eeEEEEEecC----CCCchhHHHHhcCCC-ccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEE
Confidence            4557777776    999999999999665 56899999999999999999999999999987766            999


Q ss_pred             EECCChhhHHHHHHHHHHHHH
Q psy2967          79 VDAADTDKLEASRNELHALIE   99 (101)
Q Consensus        79 ~d~~~~~sf~~~~~~~~~i~~   99 (101)
                      +|.+|+.+|++.+..+++++.
T Consensus        91 vDssD~~r~~e~~~~L~~lL~  111 (185)
T KOG0073|consen   91 VDSSDRMRMQECKQELTELLV  111 (185)
T ss_pred             EECchHHHHHHHHHHHHHHHh
Confidence            999999999999988888764

>cd04177 RSR1 RSR1 subgroup

Probab=99.73  E-value=9.8e-18  Score=105.61  Aligned_cols=80  Identities=14%  Similarity=0.204  Sum_probs=68.9

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      -+|++|||||||++++.++.+...+.||++..+..   +....+.+++||++|+++|+.            ++|||++++
T Consensus         6 liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~   85 (168)
T cd04177           6 VLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSE   85 (168)
T ss_pred             EECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCH
Confidence            36999999999999999999988899999865532   445568999999999998776            899999999


Q ss_pred             hhHHHHHHHHHHHHH
Q psy2967          85 DKLEASRNELHALIE   99 (101)
Q Consensus        85 ~sf~~~~~~~~~i~~   99 (101)
                      ++|+.+..|..++.+
T Consensus        86 ~s~~~~~~~~~~i~~  100 (168)
T cd04177          86 ASLNELGELREQVLR  100 (168)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999888764

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.72  E-value=9.6e-18  Score=105.21  Aligned_cols=80  Identities=14%  Similarity=0.187  Sum_probs=66.0

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEE---EEecCcEEEEEEeeCCCCcc-ce------------EEEEECCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRF-RS------------IYMVDAAD   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~-~~------------i~v~d~~~   83 (101)
                      .+|+++||||||++++..+.+...+.||.+..+.   .++++.+.+++||++|++++ ..            |+|||+++
T Consensus         4 vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~   83 (165)
T cd04146           4 VLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITD   83 (165)
T ss_pred             EECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCC
Confidence            4699999999999999999998888888764432   35666789999999999852 11            99999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      ++||+++..|+..+.+
T Consensus        84 ~~s~~~~~~~~~~~~~   99 (165)
T cd04146          84 RSSFDEISQLKQLIRE   99 (165)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999877654

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.72  E-value=2.4e-17  Score=107.80  Aligned_cols=80  Identities=25%  Similarity=0.432  Sum_probs=70.0

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      .+|++|||||||+++++.+.+...+.||++.++..    .+.+.+.+.+||++|+++++.            ++|||+++
T Consensus        14 liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~   93 (215)
T PTZ00132         14 LVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTS   93 (215)
T ss_pred             EECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcC
Confidence            35999999999999999999998999999988754    245679999999999987654            88999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      +.+|.++..|+.++.+
T Consensus        94 ~~s~~~~~~~~~~i~~  109 (215)
T PTZ00132         94 RITYKNVPNWHRDIVR  109 (215)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988764

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.72  E-value=2e-17  Score=107.30  Aligned_cols=81  Identities=16%  Similarity=0.213  Sum_probs=61.9

Q ss_pred             eEeccCCCcceeeee-ccccC-----cCCCCCCCccce-E-EE-----------EEecCcEEEEEEeeCCCCcc-c----
Q psy2967          19 FNMRKITKGNVTIWP-VPLSG-----QFSQDMIPTVGF-N-MR-----------KITKGNVTIKVWDIGGQPRF-R----   74 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~-~~~~~-----~~~~~~~~t~~~-~-~~-----------~~~~~~~~~~i~D~~G~~~~-~----   74 (101)
                      +.+|+++||||||+. ++..+     .|.+.+.||++. + +.           .+++..+.+++|||+|+++. +    
T Consensus         6 v~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~~~~~~~   85 (195)
T cd01873           6 VVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDKDRRFAY   85 (195)
T ss_pred             EEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhhhhcccC
Confidence            346999999999995 55543     456678999963 2 21           24567899999999999632 1    


Q ss_pred             -e----EEEEECCChhhHHHHH-HHHHHHHH
Q psy2967          75 -S----IYMVDAADTDKLEASR-NELHALIE   99 (101)
Q Consensus        75 -~----i~v~d~~~~~sf~~~~-~~~~~i~~   99 (101)
                       .    |+|||+++++||+++. .|+.++..
T Consensus        86 ~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~  116 (195)
T cd01873          86 GRSDVVLLCFSIASPNSLRNVKTMWYPEIRH  116 (195)
T ss_pred             CCCCEEEEEEECCChhHHHHHHHHHHHHHHH
Confidence             2    8999999999999997 59888764

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.72  E-value=2e-17  Score=103.19  Aligned_cols=82  Identities=21%  Similarity=0.402  Sum_probs=69.5

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|+++||||||++++..+++...+.||.+..+.  .  +....+.+.+||++|+++++.            ++|||.+
T Consensus         5 ~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   84 (163)
T cd01860           5 VLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDIT   84 (163)
T ss_pred             EEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECc
Confidence            34699999999999999999998778899886542  2  455668999999999987665            9999999


Q ss_pred             ChhhHHHHHHHHHHHHHh
Q psy2967          83 DTDKLEASRNELHALIEK  100 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~~  100 (101)
                      ++++|+.+..|+.++..+
T Consensus        85 ~~~s~~~~~~~~~~~~~~  102 (163)
T cd01860          85 SEESFEKAKSWVKELQRN  102 (163)
T ss_pred             CHHHHHHHHHHHHHHHHh
Confidence            999999999999988654

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.71  E-value=2.6e-17  Score=103.96  Aligned_cols=80  Identities=20%  Similarity=0.253  Sum_probs=66.5

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEE-E--EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR-K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      .+|+++||||||+++|..+.+.+.+.||++..+. .  ++++.+.+.+||++|+++++.            ++|||++++
T Consensus         6 iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~   85 (175)
T cd01870           6 IVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP   85 (175)
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCH
Confidence            3699999999999999999999889999886553 2  455668999999999987654            788999999


Q ss_pred             hhHHHHH-HHHHHHHH
Q psy2967          85 DKLEASR-NELHALIE   99 (101)
Q Consensus        85 ~sf~~~~-~~~~~i~~   99 (101)
                      ++|+++. .|+.++..
T Consensus        86 ~s~~~~~~~~~~~~~~  101 (175)
T cd01870          86 DSLENIPEKWTPEVKH  101 (175)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999995 58777654

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>PLN03118 Rab family protein; Provisional

Probab=99.71  E-value=5.9e-17  Score=105.79  Aligned_cols=91  Identities=21%  Similarity=0.368  Sum_probs=72.4

Q ss_pred             cccccccccceeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------
Q psy2967           6 SGQFSQDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------   75 (101)
Q Consensus         6 ~~~~~~~~~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------   75 (101)
                      ++..++....+.-+.+|++|||||||++++..+.+. .+.||.+.++.  .  +++..+.+.+||++|+++++.      
T Consensus         5 ~~~~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~   83 (211)
T PLN03118          5 SGQSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYY   83 (211)
T ss_pred             cccccccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHH
Confidence            455566666666666799999999999999988874 68889887663  2  345568999999999988765      


Q ss_pred             ------EEEEECCChhhHHHHHH-HHHHH
Q psy2967          76 ------IYMVDAADTDKLEASRN-ELHAL   97 (101)
Q Consensus        76 ------i~v~d~~~~~sf~~~~~-~~~~i   97 (101)
                            |+|||++++++|+++.. |...+
T Consensus        84 ~~~d~~vlv~D~~~~~sf~~~~~~~~~~~  112 (211)
T PLN03118         84 RNAQGIILVYDVTRRETFTNLSDVWGKEV  112 (211)
T ss_pred             hcCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence                  99999999999999976 54443

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.70  E-value=2.6e-17  Score=101.39  Aligned_cols=79  Identities=65%  Similarity=1.041  Sum_probs=70.5

Q ss_pred             eccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhHH
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLE   88 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf~   88 (101)
                      +|++|||||||++++.++++...+.||++.++..+....+.+.+||++|+++++.            ++|+|++++.++.
T Consensus         5 ~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~   84 (159)
T cd04159           5 VGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALE   84 (159)
T ss_pred             EcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHH
Confidence            6889999999999999999999999999998877777779999999999987765            8999999999999


Q ss_pred             HHHHHHHHHHH
Q psy2967          89 ASRNELHALIE   99 (101)
Q Consensus        89 ~~~~~~~~i~~   99 (101)
                      .+..|+.+++.
T Consensus        85 ~~~~~~~~~~~   95 (159)
T cd04159          85 AAKNELHDLLE   95 (159)
T ss_pred             HHHHHHHHHHc
Confidence            99888887653

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.70  E-value=2.1e-17  Score=105.41  Aligned_cols=81  Identities=32%  Similarity=0.686  Sum_probs=72.0

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhh
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDK   86 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~s   86 (101)
                      +.+|.+++||||+++++..+.+. .+.||.|++...+..+++.+.+||.+|+..++.            |||+|.+|+++
T Consensus        18 lilGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~   96 (175)
T PF00025_consen   18 LILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPER   96 (175)
T ss_dssp             EEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGG
T ss_pred             EEECCCccchHHHHHHhhhcccc-ccCcccccccceeeeCcEEEEEEeccccccccccceeeccccceeEEEEeccccee
Confidence            33577799999999999987766 589999999999999999999999999987766            99999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy2967          87 LEASRNELHALIEK  100 (101)
Q Consensus        87 f~~~~~~~~~i~~~  100 (101)
                      +.+++..+.+++++
T Consensus        97 l~e~~~~L~~ll~~  110 (175)
T PF00025_consen   97 LQEAKEELKELLND  110 (175)
T ss_dssp             HHHHHHHHHHHHTS
T ss_pred             ecccccchhhhcch
Confidence            99999999998763

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>PLN03108 Rab family protein; Provisional

Probab=99.70  E-value=3.2e-17  Score=107.15  Aligned_cols=81  Identities=17%  Similarity=0.291  Sum_probs=69.0

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE----EEecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|+++||||||++++..+.+...+.||++.++.    .+.+..+.+.+||++|++++..            ++|||++
T Consensus        10 vivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~   89 (210)
T PLN03108         10 IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT   89 (210)
T ss_pred             EEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECC
Confidence            34699999999999999999998888999987753    2445568899999999987654            9999999


Q ss_pred             ChhhHHHHHHHHHHHHH
Q psy2967          83 DTDKLEASRNELHALIE   99 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~   99 (101)
                      ++++|+++..|+.++..
T Consensus        90 ~~~s~~~l~~~~~~~~~  106 (210)
T PLN03108         90 RRETFNHLASWLEDARQ  106 (210)
T ss_pred             cHHHHHHHHHHHHHHHH
Confidence            99999999999987754

>cd04154 Arl2 Arl2 subfamily

Probab=99.70  E-value=4e-17  Score=103.36  Aligned_cols=80  Identities=28%  Similarity=0.592  Sum_probs=68.1

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhh
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDK   86 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~s   86 (101)
                      +.+|+++||||||++++....+ ..+.||+++....+..+.+.+.+||++|++.++.            ++|||++++.+
T Consensus        18 ~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s   96 (173)
T cd04154          18 LILGLDNAGKTTILKKLLGEDI-DTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLR   96 (173)
T ss_pred             EEECCCCCCHHHHHHHHccCCC-CCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHH
Confidence            3469999999999999997754 4788999987777666789999999999987654            99999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy2967          87 LEASRNELHALIE   99 (101)
Q Consensus        87 f~~~~~~~~~i~~   99 (101)
                      |+++..|+.+++.
T Consensus        97 ~~~~~~~~~~~~~  109 (173)
T cd04154          97 LDDCKRELKELLQ  109 (173)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999888754

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.70  E-value=3.6e-17  Score=103.85  Aligned_cols=79  Identities=32%  Similarity=0.536  Sum_probs=69.5

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKL   87 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf   87 (101)
                      .+|+++||||||++++..+++.. +.||++.++..+....+.+.+||++|+++++.            ++|||.+++++|
T Consensus        20 ~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~   98 (174)
T cd04153          20 IVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERL   98 (174)
T ss_pred             EECCCCCCHHHHHHHHccCCCCC-cCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHH
Confidence            45999999999999999998874 78999988877777889999999999987654            999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2967          88 EASRNELHALIE   99 (101)
Q Consensus        88 ~~~~~~~~~i~~   99 (101)
                      .++..|+.++++
T Consensus        99 ~~~~~~l~~~~~  110 (174)
T cd04153          99 PLTKEELYKMLA  110 (174)
T ss_pred             HHHHHHHHHHHh
Confidence            999988888764

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>KOG0395|consensus

Probab=99.70  E-value=7.1e-17  Score=104.91  Aligned_cols=81  Identities=19%  Similarity=0.312  Sum_probs=72.0

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      ..+|.+|||||+|+.+|..+.|.+.|.||++..+..   +++..+.+.|+|++|++.+..            ++||+++|
T Consensus         7 vvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd   86 (196)
T KOG0395|consen    7 VVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITD   86 (196)
T ss_pred             EEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCC
Confidence            346999999999999999999999999999966643   677789999999999887776            99999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      +.||+.+..++.+|++
T Consensus        87 ~~SF~~~~~l~~~I~r  102 (196)
T KOG0395|consen   87 RSSFEEAKQLREQILR  102 (196)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988854

>cd01863 Rab18 Rab18 subfamily

Probab=99.70  E-value=5e-17  Score=101.30  Aligned_cols=81  Identities=22%  Similarity=0.404  Sum_probs=68.4

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      .+|+++||||||++++..+.+...+.||.+.++..    +....+.+.+||++|++++..            ++|||+++
T Consensus         5 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~   84 (161)
T cd01863           5 LIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTR   84 (161)
T ss_pred             EECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCC
Confidence            46999999999999999998887788998876542    344568999999999987654            99999999


Q ss_pred             hhhHHHHHHHHHHHHHh
Q psy2967          84 TDKLEASRNELHALIEK  100 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~~  100 (101)
                      +++|+.+..|+.++.++
T Consensus        85 ~~s~~~~~~~~~~i~~~  101 (161)
T cd01863          85 RDTFTNLETWLNELETY  101 (161)
T ss_pred             HHHHHhHHHHHHHHHHh
Confidence            99999999999887653

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.70  E-value=4e-17  Score=101.71  Aligned_cols=80  Identities=28%  Similarity=0.510  Sum_probs=67.7

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE--E--ecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK--I--TKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      .+|+++||||||++++..+.+...+.+|++.++..  +  .+..+.+.+||++|++++..            ++|||+++
T Consensus         5 v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~   84 (164)
T smart00175        5 LIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITN   84 (164)
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCC
Confidence            46999999999999999999888888888876542  3  33447899999999987665            99999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      +.+|+.+..|+.++..
T Consensus        85 ~~s~~~~~~~l~~~~~  100 (164)
T smart00175       85 RESFENLKNWLKELRE  100 (164)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998765

Rab GTPases are implicated in vesicle trafficking.

>cd01862 Rab7 Rab7 subfamily

Probab=99.69  E-value=6.2e-17  Score=101.63  Aligned_cols=81  Identities=20%  Similarity=0.393  Sum_probs=67.8

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      .+|+++||||||++++..+.+...+.+|++.++.  .  +.+..+.+.+||++|++.+..            |+|||+++
T Consensus         5 viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~   84 (172)
T cd01862           5 ILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTN   84 (172)
T ss_pred             EECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCC
Confidence            4699999999999999999988888888886653  2  445568899999999986654            99999999


Q ss_pred             hhhHHHHHHHHHHHHHh
Q psy2967          84 TDKLEASRNELHALIEK  100 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~~  100 (101)
                      +++|+++..|.++++..
T Consensus        85 ~~~~~~~~~~~~~~~~~  101 (172)
T cd01862          85 PKSFESLDSWRDEFLIQ  101 (172)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999998877643

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04135 Tc10 TC10 subfamily

Probab=99.69  E-value=9.6e-17  Score=101.24  Aligned_cols=80  Identities=13%  Similarity=0.209  Sum_probs=65.6

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEE---EEecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      .+|++++|||||+++|..+.+.+.+.||++..+.   .+.+..+.+.+||++|++++..            ++|||++++
T Consensus         5 i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~   84 (174)
T cd04135           5 VVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNP   84 (174)
T ss_pred             EECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCH
Confidence            4699999999999999999998888898875443   2445568899999999987655            889999999


Q ss_pred             hhHHHHH-HHHHHHHH
Q psy2967          85 DKLEASR-NELHALIE   99 (101)
Q Consensus        85 ~sf~~~~-~~~~~i~~   99 (101)
                      ++|+++. .|+..+..
T Consensus        85 ~s~~~~~~~~~~~l~~  100 (174)
T cd04135          85 ASFQNVKEEWVPELKE  100 (174)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999996 57766643

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>KOG0075|consensus

Probab=99.69  E-value=6.8e-17  Score=99.83  Aligned_cols=78  Identities=67%  Similarity=1.071  Sum_probs=72.9

Q ss_pred             ccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhHHH
Q psy2967          22 RKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEA   89 (101)
Q Consensus        22 G~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf~~   89 (101)
                      |..++|||||++....+++.++..||+|++.+.+...++.+.+||.+||++|++            +||+|..|++.++.
T Consensus        27 GLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~  106 (186)
T KOG0075|consen   27 GLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEA  106 (186)
T ss_pred             eeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchh
Confidence            445999999999999999999999999999999999999999999999999988            88999999999999


Q ss_pred             HHHHHHHHHH
Q psy2967          90 SRNELHALIE   99 (101)
Q Consensus        90 ~~~~~~~i~~   99 (101)
                      ++..++.++.
T Consensus       107 sr~EL~~LL~  116 (186)
T KOG0075|consen  107 SRSELHDLLD  116 (186)
T ss_pred             hHHHHHHHhc
Confidence            9998888774

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.68  E-value=1.1e-16  Score=102.39  Aligned_cols=80  Identities=29%  Similarity=0.618  Sum_probs=65.6

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE--E---ecCcEEEEEEeeCCCCccce------------EEEEEC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK--I---TKGNVTIKVWDIGGQPRFRS------------IYMVDA   81 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~--~---~~~~~~~~i~D~~G~~~~~~------------i~v~d~   81 (101)
                      +.+|++|||||||++++..+++.. +.||++.+...  +   ....+.+.+||++|+++++.            ++|||.
T Consensus         7 ~~vG~~~~GKTsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~   85 (183)
T cd04152           7 VMLGLDSAGKTTVLYRLKFNEFVN-TVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDS   85 (183)
T ss_pred             EEECCCCCCHHHHHHHHhcCCcCC-cCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEEC
Confidence            345889999999999999988874 47888866543  2   23568999999999987654            999999


Q ss_pred             CChhhHHHHHHHHHHHHH
Q psy2967          82 ADTDKLEASRNELHALIE   99 (101)
Q Consensus        82 ~~~~sf~~~~~~~~~i~~   99 (101)
                      +++++++++..|+.++.+
T Consensus        86 ~~~~~~~~~~~~~~~i~~  103 (183)
T cd04152          86 VDVERMEEAKTELHKITR  103 (183)
T ss_pred             CCHHHHHHHHHHHHHHHh
Confidence            999999999989887764

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04151 Arl1 Arl1 subfamily

Probab=99.68  E-value=1.2e-16  Score=99.74  Aligned_cols=79  Identities=39%  Similarity=0.697  Sum_probs=67.1

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKL   87 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf   87 (101)
                      .+|+++||||||++++..+.+. .+.||++.++..++..++.+.+||++|+++++.            |+|+|.+++.++
T Consensus         4 lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~   82 (158)
T cd04151           4 ILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRL   82 (158)
T ss_pred             EECCCCCCHHHHHHHHccCCCc-CcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHH
Confidence            3699999999999999888876 568899988877778889999999999987654            899999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2967          88 EASRNELHALIE   99 (101)
Q Consensus        88 ~~~~~~~~~i~~   99 (101)
                      ..+..|+.++++
T Consensus        83 ~~~~~~~~~~~~   94 (158)
T cd04151          83 GTAKEELHAMLE   94 (158)
T ss_pred             HHHHHHHHHHHh
Confidence            888777766543

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.67  E-value=1.3e-16  Score=99.37  Aligned_cols=79  Identities=30%  Similarity=0.635  Sum_probs=66.8

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEe-cCcEEEEEEeeCCCCccce------------EEEEECCChhh
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKIT-KGNVTIKVWDIGGQPRFRS------------IYMVDAADTDK   86 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~s   86 (101)
                      .+|++|||||||++++..+.+. .+.||++.++..+. ...+.+.+||++|+++++.            ++|+|.+++.+
T Consensus         4 i~G~~~~GKTsl~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~   82 (160)
T cd04156           4 LLGLDSAGKSTLLYKLKHAELV-TTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEAR   82 (160)
T ss_pred             EEcCCCCCHHHHHHHHhcCCcc-cccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHH
Confidence            3699999999999999999887 45789988776654 3468999999999987644            99999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy2967          87 LEASRNELHALIE   99 (101)
Q Consensus        87 f~~~~~~~~~i~~   99 (101)
                      |.++..|+.++++
T Consensus        83 ~~~~~~~~~~~~~   95 (160)
T cd04156          83 LDESQKELKHILK   95 (160)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999888764

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.67  E-value=1.5e-16  Score=99.01  Aligned_cols=79  Identities=35%  Similarity=0.669  Sum_probs=69.4

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKL   87 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf   87 (101)
                      .+|.+|||||||++++..+++ ..+.+|++.....+....+.+.+||++|+++++.            ++|||++++++|
T Consensus         4 iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~   82 (158)
T cd00878           4 ILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERI   82 (158)
T ss_pred             EEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHH
Confidence            369999999999999998884 4688899988887877889999999999988654            899999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2967          88 EASRNELHALIE   99 (101)
Q Consensus        88 ~~~~~~~~~i~~   99 (101)
                      .++..|+..+.+
T Consensus        83 ~~~~~~~~~~~~   94 (158)
T cd00878          83 EEAKEELHKLLN   94 (158)
T ss_pred             HHHHHHHHHHHh
Confidence            999999887765

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04114 Rab30 Rab30 subfamily

Probab=99.65  E-value=3.3e-16  Score=98.27  Aligned_cols=80  Identities=21%  Similarity=0.358  Sum_probs=66.3

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      .+|++|||||||++++..+.+...+.+|++.++.  .  +.+..+.+.+||++|++.++.            ++|||+++
T Consensus        12 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~   91 (169)
T cd04114          12 LIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITC   91 (169)
T ss_pred             EECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcC
Confidence            3699999999999999988888778888875542  2  345558899999999987665            89999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      +.+|+++..|+.++..
T Consensus        92 ~~s~~~~~~~~~~l~~  107 (169)
T cd04114          92 EESFRCLPEWLREIEQ  107 (169)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999887653

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.65  E-value=2.6e-16  Score=100.91  Aligned_cols=79  Identities=25%  Similarity=0.466  Sum_probs=67.9

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKL   87 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf   87 (101)
                      .+|.+|||||||++++..+.+. .+.||.+.....+..+++.+.+||++|+++++.            ++|+|.++++++
T Consensus        22 ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~  100 (184)
T smart00178       22 FLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERF  100 (184)
T ss_pred             EECCCCCCHHHHHHHHhcCCCc-ccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHH
Confidence            3588999999999999988765 567888887777777789999999999987654            999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2967          88 EASRNELHALIE   99 (101)
Q Consensus        88 ~~~~~~~~~i~~   99 (101)
                      +++..|+.++++
T Consensus       101 ~~~~~~l~~l~~  112 (184)
T smart00178      101 AESKRELDALLS  112 (184)
T ss_pred             HHHHHHHHHHHc
Confidence            999999888764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.65  E-value=3.1e-16  Score=98.24  Aligned_cols=79  Identities=32%  Similarity=0.590  Sum_probs=66.6

Q ss_pred             eccCCCcceeeeeccccC------cCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          21 MRKITKGNVTIWPVPLSG------QFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~------~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +|++|||||||++++...      .+.+.+.||++.++..+...+..+.+||++|++.+..            ++|+|.+
T Consensus         5 vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~   84 (167)
T cd04160           5 LGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDST   84 (167)
T ss_pred             EecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECc
Confidence            699999999999998753      2244678899988877777889999999999987654            9999999


Q ss_pred             ChhhHHHHHHHHHHHHH
Q psy2967          83 DTDKLEASRNELHALIE   99 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~   99 (101)
                      +++++..+..|+.++++
T Consensus        85 ~~~~~~~~~~~~~~~~~  101 (167)
T cd04160          85 DRERFEESKSALEKVLR  101 (167)
T ss_pred             hHHHHHHHHHHHHHHHh
Confidence            99999999999888765

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04123 Rab21 Rab21 subfamily

Probab=99.65  E-value=3.9e-16  Score=96.83  Aligned_cols=80  Identities=18%  Similarity=0.337  Sum_probs=65.7

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      .+|++|||||||++++..+.+...+.++....+.  .  ..+..+.+.+||++|++.+..            ++|||+++
T Consensus         5 i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   84 (162)
T cd04123           5 LLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITD   84 (162)
T ss_pred             EECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCC
Confidence            3699999999999999999888777777765442  2  334567899999999987655            99999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      +++|+.+..|+.++..
T Consensus        85 ~~s~~~~~~~~~~i~~  100 (162)
T cd04123          85 ADSFQKVKKWIKELKQ  100 (162)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988764

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.65  E-value=3.6e-16  Score=93.32  Aligned_cols=80  Identities=23%  Similarity=0.369  Sum_probs=57.8

Q ss_pred             eEeccCCCcceeeeeccccCcCC--CC----CCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEE
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFS--QD----MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVD   80 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~--~~----~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d   80 (101)
                      +.+|++|||||||++++.++.+.  ..    ..+++......+......+.+||++|++.+..            ++|||
T Consensus         3 ~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D   82 (119)
T PF08477_consen    3 VVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYD   82 (119)
T ss_dssp             EEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEE
T ss_pred             EEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEEEc
Confidence            45799999999999999998876  11    22333344444556666799999999986654            99999


Q ss_pred             CCChhhHHHHHH---HHHHHH
Q psy2967          81 AADTDKLEASRN---ELHALI   98 (101)
Q Consensus        81 ~~~~~sf~~~~~---~~~~i~   98 (101)
                      +++++||+++..   |+..+.
T Consensus        83 ~s~~~s~~~~~~~~~~l~~~~  103 (119)
T PF08477_consen   83 LSDPESLEYLSQLLKWLKNIR  103 (119)
T ss_dssp             CCGHHHHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHHH
Confidence            999999999854   455543

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.65  E-value=2.9e-16  Score=101.60  Aligned_cols=80  Identities=16%  Similarity=0.212  Sum_probs=66.2

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccce-EEEE--EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGF-NMRK--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~-~~~~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      .+|++|||||||+++|..+++...+.+|++. ....  +.+..+.+.+||++|+.+++.            |+|||++++
T Consensus         4 vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~   83 (198)
T cd04147           4 FMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDP   83 (198)
T ss_pred             EECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCH
Confidence            4699999999999999999998888888752 2223  334458899999999877654            999999999


Q ss_pred             hhHHHHHHHHHHHHH
Q psy2967          85 DKLEASRNELHALIE   99 (101)
Q Consensus        85 ~sf~~~~~~~~~i~~   99 (101)
                      .+|+++..|+.++.+
T Consensus        84 ~s~~~~~~~~~~i~~   98 (198)
T cd04147          84 ESFEEVERLREEILE   98 (198)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999888765

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.65  E-value=2.1e-16  Score=100.30  Aligned_cols=81  Identities=12%  Similarity=0.243  Sum_probs=67.2

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEE-E--EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR-K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      .+|++|||||||++++..+.+...+.||++..+. .  +....+.+.+||++|+++++.            ++|||+++.
T Consensus         6 l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~   85 (180)
T cd04137           6 VLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSR   85 (180)
T ss_pred             EECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCH
Confidence            3699999999999999999988888888875432 2  334457889999999987655            999999999


Q ss_pred             hhHHHHHHHHHHHHHh
Q psy2967          85 DKLEASRNELHALIEK  100 (101)
Q Consensus        85 ~sf~~~~~~~~~i~~~  100 (101)
                      .+|+.+..|+..+++.
T Consensus        86 ~~~~~~~~~~~~~~~~  101 (180)
T cd04137          86 KSFEVVKVIYDKILDM  101 (180)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999998888753

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd00154 Rab Rab family

Probab=99.65  E-value=3.2e-16  Score=96.36  Aligned_cols=80  Identities=26%  Similarity=0.496  Sum_probs=68.4

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      .+|+++||||||++++..+.+...+.+|.+.++..    .....+.+.+||++|++.+..            ++|||.++
T Consensus         5 ~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~   84 (159)
T cd00154           5 LIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITN   84 (159)
T ss_pred             EECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCC
Confidence            46999999999999999999988888888877653    234568999999999987655            99999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      +++++.+..|+..+..
T Consensus        85 ~~~~~~~~~~~~~~~~  100 (159)
T cd00154          85 RESFENLDKWLKELKE  100 (159)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988765

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.64  E-value=2.9e-16  Score=97.68  Aligned_cols=79  Identities=16%  Similarity=0.280  Sum_probs=68.0

Q ss_pred             eccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCChh
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTD   85 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~   85 (101)
                      +|++|||||||++++..+.+...+.++++..+..   .++..+.+.+||++|++++..            ++|||++++.
T Consensus         6 ~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~   85 (164)
T cd04139           6 VGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDME   85 (164)
T ss_pred             ECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHH
Confidence            6999999999999999999998888888755533   455678999999999987766            8999999999


Q ss_pred             hHHHHHHHHHHHHH
Q psy2967          86 KLEASRNELHALIE   99 (101)
Q Consensus        86 sf~~~~~~~~~i~~   99 (101)
                      +|+++..|+..+..
T Consensus        86 s~~~~~~~~~~~~~   99 (164)
T cd04139          86 SFTATAEFREQILR   99 (164)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999887765

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04148 RGK RGK subfamily

Probab=99.64  E-value=4.6e-16  Score=102.55  Aligned_cols=80  Identities=14%  Similarity=0.122  Sum_probs=64.7

Q ss_pred             EeccCCCcceeeeeccccCcCC-CCCCCccceEE--EE--EecCcEEEEEEeeCCCCcc------c-e----EEEEECCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFS-QDMIPTVGFNM--RK--ITKGNVTIKVWDIGGQPRF------R-S----IYMVDAAD   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~-~~~~~t~~~~~--~~--~~~~~~~~~i~D~~G~~~~------~-~----i~v~d~~~   83 (101)
                      .+|++|||||||+++|..+.+. ..+.||.+.++  ..  +++....+.+||++|++.+      + .    ++|||++|
T Consensus         5 lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ad~iilV~d~td   84 (221)
T cd04148           5 MLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMWTEDSCMQYQGDAFVVVYSVTD   84 (221)
T ss_pred             EECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchHHHhHHhhcCCCEEEEEEECCC
Confidence            4699999999999999988886 67888875232  33  4566789999999999722      2 2    89999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      ++||+++..|+.++.+
T Consensus        85 ~~S~~~~~~~~~~l~~  100 (221)
T cd04148          85 RSSFERASELRIQLRR  100 (221)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988765

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>KOG1673|consensus

Probab=99.64  E-value=3.2e-16  Score=97.72  Aligned_cols=78  Identities=18%  Similarity=0.445  Sum_probs=71.0

Q ss_pred             eccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      +||+..|||||+.+|+++++.+++..|.|+++..    +.+..+.+.|||.+|++++..            +|+||++.+
T Consensus        26 lGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r  105 (205)
T KOG1673|consen   26 LGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRR  105 (205)
T ss_pred             ecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCch
Confidence            5999999999999999999988999999988842    567789999999999998887            899999999


Q ss_pred             hhHHHHHHHHHHHH
Q psy2967          85 DKLEASRNELHALI   98 (101)
Q Consensus        85 ~sf~~~~~~~~~i~   98 (101)
                      .+++.++.|+.+..
T Consensus       106 ~TLnSi~~WY~QAr  119 (205)
T KOG1673|consen  106 STLNSIKEWYRQAR  119 (205)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998864

>cd01893 Miro1 Miro1 subfamily

Probab=99.63  E-value=9.5e-16  Score=96.45  Aligned_cols=80  Identities=15%  Similarity=0.151  Sum_probs=61.9

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEE--EEecCcEEEEEEeeCCCCccce------------EEEEECCChh
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTD   85 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~   85 (101)
                      .+|+++||||||++++..+.+.+.+.++......  .+....+.+.+||++|++.++.            ++|||+++++
T Consensus         5 ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~   84 (166)
T cd01893           5 LIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPS   84 (166)
T ss_pred             EECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHH
Confidence            4699999999999999999997665544322111  2445779999999999986543            9999999999


Q ss_pred             hHHHHH-HHHHHHHH
Q psy2967          86 KLEASR-NELHALIE   99 (101)
Q Consensus        86 sf~~~~-~~~~~i~~   99 (101)
                      +|+++. .|+..+.+
T Consensus        85 s~~~~~~~~~~~i~~   99 (166)
T cd01893          85 TLERIRTKWLPLIRR   99 (166)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999985 57776653

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>KOG4252|consensus

Probab=99.62  E-value=1.8e-17  Score=105.51  Aligned_cols=87  Identities=17%  Similarity=0.277  Sum_probs=76.1

Q ss_pred             cceeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EE
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IY   77 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~   77 (101)
                      ..+.-+.+|..+|||+|+++||+.|-|.+.|..|+|.++..    +....+.+.+||++||+.|..            ++
T Consensus        19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL   98 (246)
T KOG4252|consen   19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL   98 (246)
T ss_pred             hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence            33444556999999999999999999999999999998853    556778899999999998877            89


Q ss_pred             EEECCChhhHHHHHHHHHHHHHh
Q psy2967          78 MVDAADTDKLEASRNELHALIEK  100 (101)
Q Consensus        78 v~d~~~~~sf~~~~~~~~~i~~~  100 (101)
                      ||+.+|+.||+.+..|.+++..+
T Consensus        99 VFSTTDr~SFea~~~w~~kv~~e  121 (246)
T KOG4252|consen   99 VFSTTDRYSFEATLEWYNKVQKE  121 (246)
T ss_pred             EEecccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988754

>cd00157 Rho Rho (Ras homology) family

Probab=99.62  E-value=2.2e-15  Score=94.47  Aligned_cols=81  Identities=16%  Similarity=0.309  Sum_probs=64.6

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE---EEecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      +.+|++|||||||++++..+.+...+.||......   ...+..+.+.+||++|++++..            ++|||+++
T Consensus         4 ~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   83 (171)
T cd00157           4 VVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDS   83 (171)
T ss_pred             EEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCC
Confidence            34699999999999999999987778888764442   2445678999999999986444            89999999


Q ss_pred             hhhHHHHH-HHHHHHHH
Q psy2967          84 TDKLEASR-NELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~-~~~~~i~~   99 (101)
                      +++|.++. .|+..+..
T Consensus        84 ~~s~~~~~~~~~~~~~~  100 (171)
T cd00157          84 PSSFENVKTKWIPEIRH  100 (171)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99998875 47766654

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd00879 Sar1 Sar1 subfamily

Probab=99.62  E-value=7.8e-16  Score=98.55  Aligned_cols=80  Identities=26%  Similarity=0.533  Sum_probs=68.3

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhh
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDK   86 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~s   86 (101)
                      ..+|++|||||||++++..+.+. .+.||.+.....+...+..+.+||++|+++++.            ++|+|.+++++
T Consensus        23 ~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s  101 (190)
T cd00879          23 LFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPER  101 (190)
T ss_pred             EEECCCCCCHHHHHHHHhcCCCc-ccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHH
Confidence            34688999999999999988875 688899887777777789999999999987643            88999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy2967          87 LEASRNELHALIE   99 (101)
Q Consensus        87 f~~~~~~~~~i~~   99 (101)
                      |+++..|+.++++
T Consensus       102 ~~~~~~~~~~i~~  114 (190)
T cd00879         102 FQESKEELDSLLS  114 (190)
T ss_pred             HHHHHHHHHHHHc
Confidence            9999989888764

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.61  E-value=1.1e-15  Score=99.66  Aligned_cols=81  Identities=23%  Similarity=0.374  Sum_probs=66.1

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE--E--ecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK--I--TKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|++|||||||+++|..+.+.+.+.||++..+..  .  ....+++.+||++|+++++.            ++|||.+
T Consensus         9 vv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~   88 (219)
T COG1100           9 VVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDST   88 (219)
T ss_pred             EEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecc
Confidence            446999999999999999999999999999876643  2  22378999999999999866            9999999


Q ss_pred             Chhh-HHHHHHHHHHHHH
Q psy2967          83 DTDK-LEASRNELHALIE   99 (101)
Q Consensus        83 ~~~s-f~~~~~~~~~i~~   99 (101)
                      ++.+ ++....|..++..
T Consensus        89 ~~~~~~~~~~~~~~~l~~  106 (219)
T COG1100          89 LRESSDELTEEWLEELRE  106 (219)
T ss_pred             cchhhhHHHHHHHHHHHH
Confidence            9555 5555778887765

>cd04129 Rho2 Rho2 subfamily

Probab=99.61  E-value=2.7e-15  Score=96.29  Aligned_cols=81  Identities=21%  Similarity=0.312  Sum_probs=66.2

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      .+|++|||||||++++..+.+.+.+.+|++..+..   +.+..+.+.+||++|++.+..            ++|||++++
T Consensus         6 ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~   85 (187)
T cd04129           6 IVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTP   85 (187)
T ss_pred             EECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEECCCH
Confidence            36899999999999999999888888888765532   345567899999999876643            888999999


Q ss_pred             hhHHHHH-HHHHHHHHh
Q psy2967          85 DKLEASR-NELHALIEK  100 (101)
Q Consensus        85 ~sf~~~~-~~~~~i~~~  100 (101)
                      ++|+++. .|+.++..+
T Consensus        86 ~s~~~~~~~~~~~i~~~  102 (187)
T cd04129          86 DSLENVRTKWIEEVRRY  102 (187)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            9999996 588887653

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd00876 Ras Ras family

Probab=99.60  E-value=2.1e-15  Score=93.35  Aligned_cols=81  Identities=21%  Similarity=0.302  Sum_probs=66.3

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE-E--ecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK-I--TKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~-~--~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      .+|+++||||||++++..+.+...+.|+.+..+.. .  ....+.+.+||++|++.+..            ++|||++++
T Consensus         4 i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~   83 (160)
T cd00876           4 VLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDR   83 (160)
T ss_pred             EECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCH
Confidence            46999999999999999988888888888733322 3  33468899999999886554            889999999


Q ss_pred             hhHHHHHHHHHHHHHh
Q psy2967          85 DKLEASRNELHALIEK  100 (101)
Q Consensus        85 ~sf~~~~~~~~~i~~~  100 (101)
                      ++++++..|...+.+.
T Consensus        84 ~s~~~~~~~~~~~~~~   99 (160)
T cd00876          84 ESFEEIKGYREQILRV   99 (160)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999998887653

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>KOG0074|consensus

Probab=99.58  E-value=1.1e-14  Score=89.77  Aligned_cols=79  Identities=33%  Similarity=0.594  Sum_probs=68.4

Q ss_pred             eccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCc-EEEEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGN-VTIKVWDIGGQPRFRS------------IYMVDAADTDKL   87 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf   87 (101)
                      .|-.++|||+|++++...+ +....||.|++.+.+...+ +++.+||.+||...|.            |||.|.+|+..|
T Consensus        23 lGldnAGKTT~LKqL~sED-~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krf  101 (185)
T KOG0074|consen   23 LGLDNAGKTTFLKQLKSED-PRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRF  101 (185)
T ss_pred             EecCCCcchhHHHHHccCC-hhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhH
Confidence            4556999999999999665 4478999999999887665 9999999999987766            999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy2967          88 EASRNELHALIEK  100 (101)
Q Consensus        88 ~~~~~~~~~i~~~  100 (101)
                      +++...+.++++.
T Consensus       102 eE~~~el~ELlee  114 (185)
T KOG0074|consen  102 EEISEELVELLEE  114 (185)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999888888753

>cd04155 Arl3 Arl3 subfamily

Probab=99.53  E-value=2.5e-14  Score=90.09  Aligned_cols=79  Identities=37%  Similarity=0.635  Sum_probs=66.5

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKL   87 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf   87 (101)
                      .+|++|||||||++++.+..+. .+.||.|++...+...+..+.+||++|+.++..            ++|+|.++..+|
T Consensus        19 i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~   97 (173)
T cd04155          19 ILGLDNAGKTTILKQLASEDIS-HITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRL   97 (173)
T ss_pred             EEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHH
Confidence            3588999999999999987665 578899988877777789999999999876533            899999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2967          88 EASRNELHALIE   99 (101)
Q Consensus        88 ~~~~~~~~~i~~   99 (101)
                      .....|+..+++
T Consensus        98 ~~~~~~~~~~~~  109 (173)
T cd04155          98 EEAGAELVELLE  109 (173)
T ss_pred             HHHHHHHHHHHh
Confidence            998888777653

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>KOG0096|consensus

Probab=99.50  E-value=9.3e-14  Score=89.00  Aligned_cols=87  Identities=22%  Similarity=0.324  Sum_probs=75.2

Q ss_pred             cceeeeE-eccCCCcceeeeeccccCcCCCCCCCccceEEEEE---ec-CcEEEEEEeeCCCCccce------------E
Q psy2967          14 IPTVGFN-MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKI---TK-GNVTIKVWDIGGQPRFRS------------I   76 (101)
Q Consensus        14 ~~~~g~~-vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~---~~-~~~~~~i~D~~G~~~~~~------------i   76 (101)
                      .|++.++ +|+.|.|||++++|...++|...|.+|+|......   ++ +.+++.+||++|++.+--            |
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi   87 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI   87 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence            5677776 49999999999999999999999999999888652   22 359999999999997644            9


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHh
Q psy2967          77 YMVDAADTDKLEASRNELHALIEK  100 (101)
Q Consensus        77 ~v~d~~~~~sf~~~~~~~~~i~~~  100 (101)
                      ++||++.+-++.++..|..++...
T Consensus        88 imFdVtsr~t~~n~~rwhrd~~rv  111 (216)
T KOG0096|consen   88 IMFDVTSRFTYKNVPRWHRDLVRV  111 (216)
T ss_pred             EEeeeeehhhhhcchHHHHHHHHH
Confidence            999999999999999999887653

>KOG0072|consensus

Probab=99.47  E-value=1.6e-13  Score=84.80  Aligned_cols=79  Identities=32%  Similarity=0.578  Sum_probs=68.8

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKL   87 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf   87 (101)
                      .+|..|+|||++++|+.-++.. ...||+|++.+.+..++.++++||.+|+...+.            |+|+|.+|++..
T Consensus        23 ilgldGaGkttIlyrlqvgevv-ttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dri  101 (182)
T KOG0072|consen   23 ILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRI  101 (182)
T ss_pred             EeeccCCCeeEEEEEcccCccc-ccCCCCCcCccccccccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhh
Confidence            3455599999999999988877 678999999999999999999999999987766            999999999998


Q ss_pred             HHHHHHHHHHHH
Q psy2967          88 EASRNELHALIE   99 (101)
Q Consensus        88 ~~~~~~~~~i~~   99 (101)
                      ..+...+..+++
T Consensus       102 s~a~~el~~mL~  113 (182)
T KOG0072|consen  102 SIAGVELYSMLQ  113 (182)
T ss_pred             hhhHHHHHHHhc
Confidence            888877766654

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.45  E-value=1.7e-13  Score=89.34  Aligned_cols=79  Identities=15%  Similarity=0.342  Sum_probs=61.3

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEe----cCcEEEEEEeeCCCCccce-------------EEEEECC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKIT----KGNVTIKVWDIGGQPRFRS-------------IYMVDAA   82 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~----~~~~~~~i~D~~G~~~~~~-------------i~v~d~~   82 (101)
                      .+|+++||||+|++++..+++...+.++ ..+.....    .++..+.+||++|+++++.             |||+|.+
T Consensus         5 l~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~   83 (203)
T cd04105           5 LLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSA   83 (203)
T ss_pred             EEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECc
Confidence            3688999999999999999887655444 33333322    3568899999999998766             9999999


Q ss_pred             Ch-hhHHHHHHHHHHHHH
Q psy2967          83 DT-DKLEASRNELHALIE   99 (101)
Q Consensus        83 ~~-~sf~~~~~~~~~i~~   99 (101)
                      +. +++..+..|+.+++.
T Consensus        84 ~~~~~~~~~~~~l~~il~  101 (203)
T cd04105          84 TFQKNLKDVAEFLYDILT  101 (203)
T ss_pred             cchhHHHHHHHHHHHHHH
Confidence            98 788888888877653

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.43  E-value=7e-13  Score=83.04  Aligned_cols=80  Identities=11%  Similarity=0.076  Sum_probs=58.0

Q ss_pred             EeccCCCcceeeeeccccCcCCCC-C-CCccceEEEEEecCcEEEEEEeeCCCC------cc----c--------e---E
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQD-M-IPTVGFNMRKITKGNVTIKVWDIGGQP------RF----R--------S---I   76 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~-~-~~t~~~~~~~~~~~~~~~~i~D~~G~~------~~----~--------~---i   76 (101)
                      .+|.+|||||||++++.++.+... + .+|..........+++.+.+|||+|+.      +.    .        .   +
T Consensus         5 ~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l   84 (168)
T cd01897           5 IAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVL   84 (168)
T ss_pred             EEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEE
Confidence            369999999999999998876432 2 234555555566677999999999973      10    0        1   8


Q ss_pred             EEEECCChhhH--HHHHHHHHHHHH
Q psy2967          77 YMVDAADTDKL--EASRNELHALIE   99 (101)
Q Consensus        77 ~v~d~~~~~sf--~~~~~~~~~i~~   99 (101)
                      +|+|.+++.++  ++...|+.++.+
T Consensus        85 ~v~d~~~~~~~~~~~~~~~~~~l~~  109 (168)
T cd01897          85 FLFDPSETCGYSLEEQLSLFEEIKP  109 (168)
T ss_pred             EEEeCCcccccchHHHHHHHHHHHh
Confidence            89999987654  666678777654

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>PTZ00099 rab6; Provisional

Probab=99.39  E-value=1.6e-12  Score=83.12  Aligned_cols=62  Identities=26%  Similarity=0.609  Sum_probs=53.7

Q ss_pred             CcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECCChhhHHHHHHHHHHHHH
Q psy2967          38 GQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNELHALIE   99 (101)
Q Consensus        38 ~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf~~~~~~~~~i~~   99 (101)
                      +.|.++|.||+|.++..    ++++.+.+.+|||+|+++++.            |+|||+++++||+++..|+.++++
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~   80 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILN   80 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            56888999999987742    456679999999999998776            999999999999999999998875

>cd01898 Obg Obg subfamily

Probab=99.38  E-value=1.3e-12  Score=81.82  Aligned_cols=79  Identities=18%  Similarity=0.141  Sum_probs=54.6

Q ss_pred             eccCCCcceeeeeccccCcCCC-C-CCCccceEEEEEecCc-EEEEEEeeCCCC----cc--------c----e---EEE
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQ-D-MIPTVGFNMRKITKGN-VTIKVWDIGGQP----RF--------R----S---IYM   78 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~-~-~~~t~~~~~~~~~~~~-~~~~i~D~~G~~----~~--------~----~---i~v   78 (101)
                      +|.+|||||||++++.+.+... . ..+|.......+...+ ..+.+|||+|+.    ..        +    .   ++|
T Consensus         6 vG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v   85 (170)
T cd01898           6 VGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHV   85 (170)
T ss_pred             ECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEE
Confidence            6899999999999998654321 1 1223333333334444 489999999963    11        0    0   889


Q ss_pred             EECCCh-hhHHHHHHHHHHHHH
Q psy2967          79 VDAADT-DKLEASRNELHALIE   99 (101)
Q Consensus        79 ~d~~~~-~sf~~~~~~~~~i~~   99 (101)
                      +|++++ ++++.+..|.+++.+
T Consensus        86 ~D~~~~~~~~~~~~~~~~~l~~  107 (170)
T cd01898          86 IDLSGDDDPVEDYKTIRNELEL  107 (170)
T ss_pred             EecCCCCCHHHHHHHHHHHHHH
Confidence            999999 799999888887754

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.36  E-value=2.9e-12  Score=78.18  Aligned_cols=80  Identities=18%  Similarity=0.236  Sum_probs=62.2

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE--EecCc--EEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK--ITKGN--VTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      .+|.+|+|||||++++..+.+...+.++++.++..  +...+  +.+.+||++|+++++.            ++++|+..
T Consensus         6 ~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~   85 (161)
T TIGR00231         6 IVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVI   85 (161)
T ss_pred             EECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEee
Confidence            35899999999999999998877787888766643  44444  8899999999987743            78899988


Q ss_pred             h-hhHHHHH-HHHHHHHH
Q psy2967          84 T-DKLEASR-NELHALIE   99 (101)
Q Consensus        84 ~-~sf~~~~-~~~~~i~~   99 (101)
                      . .++.+.. .|...+..
T Consensus        86 ~v~~~~~~~~~~~~~~~~  103 (161)
T TIGR00231        86 LVLDVEEILEKQTKEIIH  103 (161)
T ss_pred             eehhhhhHhHHHHHHHHH
Confidence            8 7777775 66665543

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd04171 SelB SelB subfamily

Probab=99.35  E-value=8.3e-13  Score=82.05  Aligned_cols=70  Identities=14%  Similarity=0.220  Sum_probs=48.9

Q ss_pred             eccCCCcceeeeeccccC---cCCCCCC--CccceEEEEEecC-cEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          21 MRKITKGNVTIWPVPLSG---QFSQDMI--PTVGFNMRKITKG-NVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~---~~~~~~~--~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +|.++||||||++++.+.   .+..++.  .|+...+..+... +..+.+|||+|++++..            ++|+|.+
T Consensus         6 ~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~   85 (164)
T cd04171           6 AGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAAD   85 (164)
T ss_pred             EecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECC
Confidence            599999999999999863   3333332  3444444444433 67899999999987754            8999998


Q ss_pred             C---hhhHHHH
Q psy2967          83 D---TDKLEAS   90 (101)
Q Consensus        83 ~---~~sf~~~   90 (101)
                      +   +++++.+
T Consensus        86 ~~~~~~~~~~~   96 (164)
T cd04171          86 EGIMPQTREHL   96 (164)
T ss_pred             CCccHhHHHHH
Confidence            7   4454443

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.31  E-value=3.5e-12  Score=80.14  Aligned_cols=79  Identities=22%  Similarity=0.186  Sum_probs=56.5

Q ss_pred             eccCCCcceeeeeccccCcC-CCCC-CCccceEEEEEecC-cEEEEEEeeCCCCc-------c--------ce----EEE
Q psy2967          21 MRKITKGNVTIWPVPLSGQF-SQDM-IPTVGFNMRKITKG-NVTIKVWDIGGQPR-------F--------RS----IYM   78 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~-~~~~-~~t~~~~~~~~~~~-~~~~~i~D~~G~~~-------~--------~~----i~v   78 (101)
                      +|++|||||||++++.+.++ ...+ .+|.......+..+ +..+.+||++|...       .        +.    ++|
T Consensus         2 iG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v   81 (176)
T cd01881           2 VGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHV   81 (176)
T ss_pred             CCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEE
Confidence            58999999999999998764 2222 34445544445555 78899999999621       1        01    889


Q ss_pred             EECCCh------hhHHHHHHHHHHHHH
Q psy2967          79 VDAADT------DKLEASRNELHALIE   99 (101)
Q Consensus        79 ~d~~~~------~sf~~~~~~~~~i~~   99 (101)
                      +|.+++      .++++...|..++..
T Consensus        82 ~d~~~~~~~~~~~~~~~~~~~~~~~~~  108 (176)
T cd01881          82 VDASEDDDIGGVDPLEDYEILNAELKL  108 (176)
T ss_pred             EeccCCccccccCHHHHHHHHHHHHHH
Confidence            999998      578888877777653

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.28  E-value=5.3e-12  Score=76.07  Aligned_cols=72  Identities=26%  Similarity=0.508  Sum_probs=56.8

Q ss_pred             eccCCCcceeeeeccccCcC-CCCCCCccceEEEEEe----cCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          21 MRKITKGNVTIWPVPLSGQF-SQDMIPTVGFNMRKIT----KGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~----~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      +|++|+|||||++++..... .....+|. .+.....    .....+.+||++|+..+..            ++|+|.++
T Consensus         2 iG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   80 (157)
T cd00882           2 VGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD   80 (157)
T ss_pred             CCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence            58999999999999998776 45566665 5443322    3478999999999875443            89999999


Q ss_pred             hhhHHHHHHH
Q psy2967          84 TDKLEASRNE   93 (101)
Q Consensus        84 ~~sf~~~~~~   93 (101)
                      ..+++.+..|
T Consensus        81 ~~~~~~~~~~   90 (157)
T cd00882          81 RESFENVKEW   90 (157)
T ss_pred             HHHHHHHHHH
Confidence            9999998877

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01878 HflX HflX subfamily

Probab=99.27  E-value=7.3e-12  Score=81.12  Aligned_cols=83  Identities=24%  Similarity=0.321  Sum_probs=57.1

Q ss_pred             cceeeeEeccCCCcceeeeeccccCcCCC--CCCCccceEEEEEecCc-EEEEEEeeCCCCc---------cc-------
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLSGQFSQ--DMIPTVGFNMRKITKGN-VTIKVWDIGGQPR---------FR-------   74 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~---------~~-------   74 (101)
                      ++.+.+ +|++|||||||++++....+..  .+.+|+......+...+ ..+.+||++|...         +.       
T Consensus        41 ~~~I~i-iG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~  119 (204)
T cd01878          41 IPTVAL-VGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVA  119 (204)
T ss_pred             CCeEEE-ECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHHHh
Confidence            444443 6999999999999999876432  23455555544444333 4899999999732         21       


Q ss_pred             e----EEEEECCChhhHHHHHHHHHHH
Q psy2967          75 S----IYMVDAADTDKLEASRNELHAL   97 (101)
Q Consensus        75 ~----i~v~d~~~~~sf~~~~~~~~~i   97 (101)
                      .    ++|+|.+++.++.....|...+
T Consensus       120 ~~d~ii~v~D~~~~~~~~~~~~~~~~l  146 (204)
T cd01878         120 EADLLLHVVDASDPDYEEQIETVEKVL  146 (204)
T ss_pred             cCCeEEEEEECCCCChhhHHHHHHHHH
Confidence            1    8899999999888776665443

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.26  E-value=1.1e-11  Score=77.45  Aligned_cols=64  Identities=19%  Similarity=0.194  Sum_probs=47.4

Q ss_pred             eccCCCcceeeeeccccCcCCCCCCC--ccceEEEEEec---CcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQDMIP--TVGFNMRKITK---GNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~~~~~--t~~~~~~~~~~---~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      +|.+|||||||++++..+++...+.+  |.......+..   .+..+.+|||+|++.+..            ++|+|.++
T Consensus         6 iG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~   85 (168)
T cd01887           6 MGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADD   85 (168)
T ss_pred             EecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCC
Confidence            68899999999999998887754333  32233233433   478899999999977654            88999987


Q ss_pred             h
Q psy2967          84 T   84 (101)
Q Consensus        84 ~   84 (101)
                      .
T Consensus        86 ~   86 (168)
T cd01887          86 G   86 (168)
T ss_pred             C
Confidence            4

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd01890 LepA LepA subfamily

Probab=99.26  E-value=8e-12  Score=79.01  Aligned_cols=74  Identities=16%  Similarity=0.299  Sum_probs=52.9

Q ss_pred             eccCCCcceeeeeccccCc-------CCCCCCCcc------ceEEE----EE-----ecCcEEEEEEeeCCCCccce---
Q psy2967          21 MRKITKGNVTIWPVPLSGQ-------FSQDMIPTV------GFNMR----KI-----TKGNVTIKVWDIGGQPRFRS---   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~-------~~~~~~~t~------~~~~~----~~-----~~~~~~~~i~D~~G~~~~~~---   75 (101)
                      +|.++||||||+++|+...       +...+.++.      |..+.    .+     +.+++.+.+|||+|++++..   
T Consensus         6 vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~   85 (179)
T cd01890           6 IAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFSYEVS   85 (179)
T ss_pred             EeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhHHHHH
Confidence            5899999999999998632       223343433      33332    12     45678999999999998765   


Q ss_pred             ---------EEEEECCChhhHHHHHHHH
Q psy2967          76 ---------IYMVDAADTDKLEASRNEL   94 (101)
Q Consensus        76 ---------i~v~d~~~~~sf~~~~~~~   94 (101)
                               |+|||.++..+++....|.
T Consensus        86 ~~~~~ad~~i~v~D~~~~~~~~~~~~~~  113 (179)
T cd01890          86 RSLAACEGALLLVDATQGVEAQTLANFY  113 (179)
T ss_pred             HHHHhcCeEEEEEECCCCccHhhHHHHH
Confidence                     9999999987776665554

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.25  E-value=5.6e-12  Score=81.28  Aligned_cols=64  Identities=22%  Similarity=0.431  Sum_probs=48.7

Q ss_pred             eccCCCcceeeeecccc--CcCCCCC------------CCccceEE----EEEecCcEEEEEEeeCCCCccce-------
Q psy2967          21 MRKITKGNVTIWPVPLS--GQFSQDM------------IPTVGFNM----RKITKGNVTIKVWDIGGQPRFRS-------   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~--~~~~~~~------------~~t~~~~~----~~~~~~~~~~~i~D~~G~~~~~~-------   75 (101)
                      +|.++||||||++++..  +.|...+            .++.|..+    ..+..+...+.+||++|+++|..       
T Consensus         8 vG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~   87 (194)
T cd01891           8 IAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVERVLS   87 (194)
T ss_pred             EecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHHHHHH
Confidence            59999999999999997  5665443            23344333    23667889999999999998765       


Q ss_pred             -----EEEEECCCh
Q psy2967          76 -----IYMVDAADT   84 (101)
Q Consensus        76 -----i~v~d~~~~   84 (101)
                           ++|||.++.
T Consensus        88 ~~d~~ilV~d~~~~  101 (194)
T cd01891          88 MVDGVLLLVDASEG  101 (194)
T ss_pred             hcCEEEEEEECCCC
Confidence                 889999874

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>KOG0076|consensus

Probab=99.25  E-value=3.9e-12  Score=80.60  Aligned_cols=82  Identities=30%  Similarity=0.603  Sum_probs=66.1

Q ss_pred             cceeeeEeccCCCcceeeeeccccC-------cCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce-----------
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLSG-------QFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS-----------   75 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~~-------~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------   75 (101)
                      +.++|+    .++|||+|+.+....       -.+....||+|.+..++...+..+.+||.+||+..++           
T Consensus        20 vlIlgl----dnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~~H~   95 (197)
T KOG0076|consen   20 VLILGL----DNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWLAHG   95 (197)
T ss_pred             heeecc----ccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHHHHHHHHHHHHHhce
Confidence            455555    599999999876532       1223567999999988877799999999999998877           


Q ss_pred             -EEEEECCChhhHHHHHHHHHHHHH
Q psy2967          76 -IYMVDAADTDKLEASRNELHALIE   99 (101)
Q Consensus        76 -i~v~d~~~~~sf~~~~~~~~~i~~   99 (101)
                       |+++|.+|+++|++.+..++.+.+
T Consensus        96 ii~viDa~~~eR~~~~~t~~~~v~~  120 (197)
T KOG0076|consen   96 IIYVIDATDRERFEESKTAFEKVVE  120 (197)
T ss_pred             eEEeecCCCHHHHHHHHHHHHHHHH
Confidence             999999999999999887777654

>KOG4423|consensus

Probab=99.23  E-value=3.7e-14  Score=90.77  Aligned_cols=83  Identities=22%  Similarity=0.330  Sum_probs=70.6

Q ss_pred             eeEeccCCCcceeeeeccccCcCCCCCCCccceEEEE--Ee---cCcEEEEEEeeCCCCccce------------EEEEE
Q psy2967          18 GFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK--IT---KGNVTIKVWDIGGQPRFRS------------IYMVD   80 (101)
Q Consensus        18 g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~--~~---~~~~~~~i~D~~G~~~~~~------------i~v~d   80 (101)
                      -+.+|+.++|||++++|+....|...|..|||.++..  +.   ...+++++||.+||++|-.            .+|||
T Consensus        28 ~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iVfd  107 (229)
T KOG4423|consen   28 VLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFD  107 (229)
T ss_pred             hheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEEEE
Confidence            4567889999999999999999999999999988732  33   3347899999999998765            88999


Q ss_pred             CCChhhHHHHHHHHHHHHHh
Q psy2967          81 AADTDKLEASRNELHALIEK  100 (101)
Q Consensus        81 ~~~~~sf~~~~~~~~~i~~~  100 (101)
                      +++.-+|+.+.+|.+++-+.
T Consensus       108 vt~s~tfe~~skwkqdldsk  127 (229)
T KOG4423|consen  108 VTRSLTFEPVSKWKQDLDSK  127 (229)
T ss_pred             ccccccccHHHHHHHhccCc
Confidence            99999999999999987543

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.22  E-value=2.9e-11  Score=86.99  Aligned_cols=76  Identities=17%  Similarity=0.192  Sum_probs=55.0

Q ss_pred             eccCCCcceeeeeccccCc--CCCCCCCccc-eEEEEEecCcEEEEEEeeCCCCccce--------------------EE
Q psy2967          21 MRKITKGNVTIWPVPLSGQ--FSQDMIPTVG-FNMRKITKGNVTIKVWDIGGQPRFRS--------------------IY   77 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~--~~~~~~~t~~-~~~~~~~~~~~~~~i~D~~G~~~~~~--------------------i~   77 (101)
                      +|++|||||||++++.+.+  +...+..|.. .....+..++..+.+|||+|+..+..                    ++
T Consensus       209 vG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~  288 (442)
T TIGR00450       209 VGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIY  288 (442)
T ss_pred             ECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEE
Confidence            5999999999999999865  3444444432 22234666778899999999843221                    88


Q ss_pred             EEECCChhhHHHHHHHHHHHH
Q psy2967          78 MVDAADTDKLEASRNELHALI   98 (101)
Q Consensus        78 v~d~~~~~sf~~~~~~~~~i~   98 (101)
                      |||.+++.+++..  |+.++.
T Consensus       289 V~D~s~~~s~~~~--~l~~~~  307 (442)
T TIGR00450       289 VLDASQPLTKDDF--LIIDLN  307 (442)
T ss_pred             EEECCCCCChhHH--HHHHHh
Confidence            9999999888775  766653

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.22  E-value=1.7e-12  Score=79.50  Aligned_cols=64  Identities=11%  Similarity=0.053  Sum_probs=47.8

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCC-----ccc-------e----EEEEECCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQP-----RFR-------S----IYMVDAAD   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~-----~~~-------~----i~v~d~~~   83 (101)
                      .+|++|||||||++++.++.+  .+.+|++.++..        .+||++|+.     .++       .    ++|||+++
T Consensus         5 liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~~~--------~~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~   74 (142)
T TIGR02528         5 FIGSVGCGKTTLTQALQGEEI--LYKKTQAVEYND--------GAIDTPGEYVENRRLYSALIVTAADADVIALVQSATD   74 (142)
T ss_pred             EECCCCCCHHHHHHHHcCCcc--ccccceeEEEcC--------eeecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCC
Confidence            369999999999999998765  356776655422        689999982     232       1    89999999


Q ss_pred             hhhHHHHHHHH
Q psy2967          84 TDKLEASRNEL   94 (101)
Q Consensus        84 ~~sf~~~~~~~   94 (101)
                      +.++... .|.
T Consensus        75 ~~s~~~~-~~~   84 (142)
T TIGR02528        75 PESRFPP-GFA   84 (142)
T ss_pred             CCcCCCh-hHH
Confidence            9998653 444

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.21  E-value=4.9e-11  Score=83.15  Aligned_cols=85  Identities=18%  Similarity=0.229  Sum_probs=59.7

Q ss_pred             cceeeeEeccCCCcceeeeeccccCcCC-CCC-CCccceEEEEEec-CcEEEEEEeeCCCCc-------c-----ce---
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLSGQFS-QDM-IPTVGFNMRKITK-GNVTIKVWDIGGQPR-------F-----RS---   75 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~~-~~~-~~t~~~~~~~~~~-~~~~~~i~D~~G~~~-------~-----~~---   75 (101)
                      ++-+++ ||.||||||||++++...... ..| ..|...+...+.. +...+.+||++|.-.       .     +.   
T Consensus       158 ~adVgl-VG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~  236 (335)
T PRK12299        158 LADVGL-VGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIER  236 (335)
T ss_pred             cCCEEE-EcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence            344443 599999999999999864322 122 2455555544544 557899999998631       0     00   


Q ss_pred             ----EEEEECCChhhHHHHHHHHHHHHH
Q psy2967          76 ----IYMVDAADTDKLEASRNELHALIE   99 (101)
Q Consensus        76 ----i~v~d~~~~~sf~~~~~~~~~i~~   99 (101)
                          ++|+|++++++++++..|..++..
T Consensus       237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~  264 (335)
T PRK12299        237 TRLLLHLVDIEAVDPVEDYKTIRNELEK  264 (335)
T ss_pred             cCEEEEEEcCCCCCCHHHHHHHHHHHHH
Confidence                889999998899999999888754

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.20  E-value=2.3e-11  Score=85.22  Aligned_cols=81  Identities=21%  Similarity=0.302  Sum_probs=57.2

Q ss_pred             cceeeeEeccCCCcceeeeeccccCcCC-C-CCCCccceEEEEEec-CcEEEEEEeeCCCC---------ccce------
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLSGQFS-Q-DMIPTVGFNMRKITK-GNVTIKVWDIGGQP---------RFRS------   75 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~~-~-~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~---------~~~~------   75 (101)
                      .|.+.+ +|.+|||||||++++.+.++. . ...+|.......+.. .+..+.+|||+|..         .|+.      
T Consensus       189 ~~~Val-vG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~  267 (351)
T TIGR03156       189 VPTVAL-VGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEVR  267 (351)
T ss_pred             CcEEEE-ECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHHHH
Confidence            344443 599999999999999987643 2 234666665555554 45789999999972         2221      


Q ss_pred             -----EEEEECCChhhHHHHHHHHH
Q psy2967          76 -----IYMVDAADTDKLEASRNELH   95 (101)
Q Consensus        76 -----i~v~d~~~~~sf~~~~~~~~   95 (101)
                           ++|+|.+++.+++....|..
T Consensus       268 ~ADlil~VvD~s~~~~~~~~~~~~~  292 (351)
T TIGR03156       268 EADLLLHVVDASDPDREEQIEAVEK  292 (351)
T ss_pred             hCCEEEEEEECCCCchHHHHHHHHH
Confidence                 88999999988877755543

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.19  E-value=4.1e-11  Score=74.06  Aligned_cols=67  Identities=18%  Similarity=0.263  Sum_probs=47.9

Q ss_pred             eccCCCcceeeeeccccCcCCCCCCC--ccceEEEEEecCcEEEEEEeeCCCCccc----------------e----EEE
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQDMIP--TVGFNMRKITKGNVTIKVWDIGGQPRFR----------------S----IYM   78 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~----------------~----i~v   78 (101)
                      +|.+|||||||++++.+..+.....|  |.......+...+..+.+|||+|+..+.                .    ++|
T Consensus         2 ~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v   81 (158)
T cd01879           2 VGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNV   81 (158)
T ss_pred             CCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEE
Confidence            58999999999999998764433333  3334444455556789999999986432                1    889


Q ss_pred             EECCChhhH
Q psy2967          79 VDAADTDKL   87 (101)
Q Consensus        79 ~d~~~~~sf   87 (101)
                      +|.++.++.
T Consensus        82 ~d~~~~~~~   90 (158)
T cd01879          82 VDATNLERN   90 (158)
T ss_pred             eeCCcchhH
Confidence            999886553

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PRK15494 era GTPase Era; Provisional

Probab=99.15  E-value=9.1e-11  Score=81.90  Aligned_cols=52  Identities=15%  Similarity=0.158  Sum_probs=38.8

Q ss_pred             EeccCCCcceeeeeccccCcCC---CCCCCccceEEEEEecCcEEEEEEeeCCCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFS---QDMIPTVGFNMRKITKGNVTIKVWDIGGQP   71 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~   71 (101)
                      .+|.+|||||||++++.+..+.   ....+|.......+..++..+.+|||+|+.
T Consensus        57 ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~  111 (339)
T PRK15494         57 IIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIF  111 (339)
T ss_pred             EEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcC
Confidence            3599999999999999987764   233445444444456667789999999984

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.13  E-value=2.4e-10  Score=79.55  Aligned_cols=83  Identities=17%  Similarity=0.169  Sum_probs=55.9

Q ss_pred             ceeeeEeccCCCcceeeeeccccCcCC-CCC-CCccceEEEEEecCc-EEEEEEeeCCCCccc----------------e
Q psy2967          15 PTVGFNMRKITKGNVTIWPVPLSGQFS-QDM-IPTVGFNMRKITKGN-VTIKVWDIGGQPRFR----------------S   75 (101)
Q Consensus        15 ~~~g~~vG~~~vGKtsl~~~~~~~~~~-~~~-~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~----------------~   75 (101)
                      +-+++ ||.++||||||++++...+.. .+| .+|...+...+...+ ..+.+||++|.....                .
T Consensus       158 adV~l-vG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhiera  236 (329)
T TIGR02729       158 ADVGL-VGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERT  236 (329)
T ss_pred             ccEEE-EcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence            33443 599999999999999976421 122 234444444444444 889999999974211                0


Q ss_pred             ---EEEEECCCh---hhHHHHHHHHHHHH
Q psy2967          76 ---IYMVDAADT---DKLEASRNELHALI   98 (101)
Q Consensus        76 ---i~v~d~~~~---~sf~~~~~~~~~i~   98 (101)
                         ++|+|+++.   ++++.+..|.+++.
T Consensus       237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~  265 (329)
T TIGR02729       237 RVLLHLIDISPLDGRDPIEDYEIIRNELK  265 (329)
T ss_pred             CEEEEEEcCccccccCHHHHHHHHHHHHH
Confidence               889999987   67888877777664

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>KOG0077|consensus

Probab=99.13  E-value=2.9e-11  Score=76.25  Aligned_cols=81  Identities=26%  Similarity=0.545  Sum_probs=69.3

Q ss_pred             cceeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEEC
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDA   81 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~   81 (101)
                      +..+|+.    |+|||||++.+.++... ++.||.....+++...+++++.+|.+|+..-+.            ++.+|+
T Consensus        23 llFlGLD----NAGKTTLLHMLKdDrl~-qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda   97 (193)
T KOG0077|consen   23 LLFLGLD----NAGKTTLLHMLKDDRLG-QHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDA   97 (193)
T ss_pred             EEEEeec----CCchhhHHHHHcccccc-ccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeeh
Confidence            5566665    99999999999987765 789999988888889999999999999865443            889999


Q ss_pred             CChhhHHHHHHHHHHHHH
Q psy2967          82 ADTDKLEASRNELHALIE   99 (101)
Q Consensus        82 ~~~~sf~~~~~~~~~i~~   99 (101)
                      .|+++|.+++..++.++.
T Consensus        98 ~d~er~~es~~eld~ll~  115 (193)
T KOG0077|consen   98 YDQERFAESKKELDALLS  115 (193)
T ss_pred             hhHHHhHHHHHHHHHHHh
Confidence            999999999998887764

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.09  E-value=1.2e-10  Score=77.56  Aligned_cols=78  Identities=24%  Similarity=0.395  Sum_probs=49.0

Q ss_pred             EeccCCCcceeeeeccccCcCCCC---CCCccceEEEEEe-cCcEEEEEEeeCCCCccce-----------------EEE
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQD---MIPTVGFNMRKIT-KGNVTIKVWDIGGQPRFRS-----------------IYM   78 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~---~~~t~~~~~~~~~-~~~~~~~i~D~~G~~~~~~-----------------i~v   78 (101)
                      -+|++++||||+.+-...+-.+.+   ..||+..+...+. ...+.+++||++||..+-.                 |||
T Consensus         4 LmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV   83 (232)
T PF04670_consen    4 LMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYV   83 (232)
T ss_dssp             EEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEE
T ss_pred             EEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEE
Confidence            369999999999988776543322   3588888877775 5678999999999974422                 999


Q ss_pred             EECCChhhHHHHHHHHHHHH
Q psy2967          79 VDAADTDKLEASRNELHALI   98 (101)
Q Consensus        79 ~d~~~~~sf~~~~~~~~~i~   98 (101)
                      +|+.+.+ +.+...++.+.+
T Consensus        84 ~D~qs~~-~~~~l~~~~~~i  102 (232)
T PF04670_consen   84 FDAQSDD-YDEDLAYLSDCI  102 (232)
T ss_dssp             EETT-ST-CHHHHHHHHHHH
T ss_pred             EEccccc-HHHHHHHHHHHH
Confidence            9999654 344434444433

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PRK04213 GTP-binding protein; Provisional

Probab=99.08  E-value=3.1e-11  Score=77.94  Aligned_cols=48  Identities=15%  Similarity=0.088  Sum_probs=36.2

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGG   69 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G   69 (101)
                      .+|.+|||||||++++.++.+...+.|+.......+...  .+.+||++|
T Consensus        14 i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G   61 (201)
T PRK04213         14 FVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPG   61 (201)
T ss_pred             EECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCc
Confidence            369999999999999998887665666554443334333  589999999

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.07  E-value=5.3e-10  Score=68.72  Aligned_cols=74  Identities=15%  Similarity=0.169  Sum_probs=51.3

Q ss_pred             EeccCCCcceeeeeccccCcCC--CCCCCc-cceEEEEEecCcEEEEEEeeCCCCccce--------------------E
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFS--QDMIPT-VGFNMRKITKGNVTIKVWDIGGQPRFRS--------------------I   76 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~--~~~~~t-~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------------------i   76 (101)
                      .+|++|+|||||++++......  ..+.++ .......+...+..+.+||++|...+..                    +
T Consensus         6 l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v   85 (157)
T cd04164           6 IVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVL   85 (157)
T ss_pred             EECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEE
Confidence            3599999999999999987642  222222 2222234455678899999999754321                    8


Q ss_pred             EEEECCChhhHHHHHHH
Q psy2967          77 YMVDAADTDKLEASRNE   93 (101)
Q Consensus        77 ~v~d~~~~~sf~~~~~~   93 (101)
                      +|+|++++.+..+...+
T Consensus        86 ~v~d~~~~~~~~~~~~~  102 (157)
T cd04164          86 FVIDASRGLDEEDLEIL  102 (157)
T ss_pred             EEEECCCCCCHHHHHHH
Confidence            89999998887776554

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK11058 GTPase HflX; Provisional

Probab=99.07  E-value=4.8e-10  Score=80.39  Aligned_cols=80  Identities=23%  Similarity=0.294  Sum_probs=54.1

Q ss_pred             ccceeeeEeccCCCcceeeeeccccCcCCC--CCCCccceEEEEEecCc-EEEEEEeeCCCCc---------cce-----
Q psy2967          13 MIPTVGFNMRKITKGNVTIWPVPLSGQFSQ--DMIPTVGFNMRKITKGN-VTIKVWDIGGQPR---------FRS-----   75 (101)
Q Consensus        13 ~~~~~g~~vG~~~vGKtsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~---------~~~-----   75 (101)
                      .+|.+.+ +|.+|||||||++++.+.++..  ....|.......+...+ ..+.+|||+|..+         |..     
T Consensus       196 ~~p~Val-VG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~  274 (426)
T PRK11058        196 DVPTVSL-VGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQET  274 (426)
T ss_pred             CCCEEEE-ECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHh
Confidence            3566554 6999999999999999865431  22344444444444333 3788999999843         211     


Q ss_pred             ------EEEEECCChhhHHHHHHH
Q psy2967          76 ------IYMVDAADTDKLEASRNE   93 (101)
Q Consensus        76 ------i~v~d~~~~~sf~~~~~~   93 (101)
                            ++|+|.+++.+++.+..|
T Consensus       275 ~~ADlIL~VvDaS~~~~~e~l~~v  298 (426)
T PRK11058        275 RQATLLLHVVDAADVRVQENIEAV  298 (426)
T ss_pred             hcCCEEEEEEeCCCccHHHHHHHH
Confidence                  889999999888776433

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.05  E-value=4e-10  Score=81.28  Aligned_cols=74  Identities=14%  Similarity=0.144  Sum_probs=53.0

Q ss_pred             eccCCCcceeeeeccccCcC--CCCCCCc-cceEEEEEecCcEEEEEEeeCCCCccce--------------------EE
Q psy2967          21 MRKITKGNVTIWPVPLSGQF--SQDMIPT-VGFNMRKITKGNVTIKVWDIGGQPRFRS--------------------IY   77 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~--~~~~~~t-~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------------------i~   77 (101)
                      +|.+|||||||++++.+.+.  ...+..| .......+...+..+.+|||+|...+..                    ++
T Consensus       221 vG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~  300 (449)
T PRK05291        221 AGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLL  300 (449)
T ss_pred             ECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEE
Confidence            59999999999999998653  3333332 2333344566778899999999864321                    88


Q ss_pred             EEECCChhhHHHHHHHH
Q psy2967          78 MVDAADTDKLEASRNEL   94 (101)
Q Consensus        78 v~d~~~~~sf~~~~~~~   94 (101)
                      |||.+++.++++...|.
T Consensus       301 VvD~s~~~s~~~~~~l~  317 (449)
T PRK05291        301 VLDASEPLTEEDDEILE  317 (449)
T ss_pred             EecCCCCCChhHHHHHH
Confidence            99999998887665443

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.03  E-value=1.1e-09  Score=79.28  Aligned_cols=74  Identities=19%  Similarity=0.202  Sum_probs=49.8

Q ss_pred             cceeeeEeccCCCcceeeeeccccCcCC-CCCCCccceE--EEEEecCcEEEEEEeeCCCCcc--------c--------
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLSGQFS-QDMIPTVGFN--MRKITKGNVTIKVWDIGGQPRF--------R--------   74 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~~-~~~~~t~~~~--~~~~~~~~~~~~i~D~~G~~~~--------~--------   74 (101)
                      +|.+. .+|.+|||||||+++++++.+. ....|.+..+  ...+...+..+.+|||+|.+..        .        
T Consensus        38 ~~~V~-IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~  116 (472)
T PRK03003         38 LPVVA-VVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR  116 (472)
T ss_pred             CCEEE-EEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence            45554 3699999999999999987642 1222322222  2234556678999999997631        1        


Q ss_pred             e----EEEEECCChhhHH
Q psy2967          75 S----IYMVDAADTDKLE   88 (101)
Q Consensus        75 ~----i~v~d~~~~~sf~   88 (101)
                      .    |+|+|.++..++.
T Consensus       117 ~aD~il~VvD~~~~~s~~  134 (472)
T PRK03003        117 TADAVLFVVDATVGATAT  134 (472)
T ss_pred             hCCEEEEEEECCCCCCHH
Confidence            1    9999999886653

>cd01894 EngA1 EngA1 subfamily

Probab=99.00  E-value=8.8e-10  Score=67.80  Aligned_cols=69  Identities=13%  Similarity=0.120  Sum_probs=47.5

Q ss_pred             eccCCCcceeeeeccccCc--CCCCCCCc-cceEEEEEecCcEEEEEEeeCCCCccce--------------------EE
Q psy2967          21 MRKITKGNVTIWPVPLSGQ--FSQDMIPT-VGFNMRKITKGNVTIKVWDIGGQPRFRS--------------------IY   77 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~--~~~~~~~t-~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------------------i~   77 (101)
                      +|.+|||||||++++....  +...+.++ ...........+..+.+||++|...+..                    ++
T Consensus         3 ~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~   82 (157)
T cd01894           3 VGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILF   82 (157)
T ss_pred             cCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEE
Confidence            6999999999999999764  22233332 2233344566678899999999876321                    88


Q ss_pred             EEECCChhhHHH
Q psy2967          78 MVDAADTDKLEA   89 (101)
Q Consensus        78 v~d~~~~~sf~~   89 (101)
                      |+|..+..+...
T Consensus        83 v~d~~~~~~~~~   94 (157)
T cd01894          83 VVDGREGLTPAD   94 (157)
T ss_pred             EEeccccCCccH
Confidence            899887654433

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.00  E-value=7.2e-10  Score=82.20  Aligned_cols=78  Identities=17%  Similarity=0.239  Sum_probs=54.3

Q ss_pred             ccceeeeEeccCCCcceeeeeccccCcCCCC----CCCccceEEEEEec----------------CcEEEEEEeeCCCCc
Q psy2967          13 MIPTVGFNMRKITKGNVTIWPVPLSGQFSQD----MIPTVGFNMRKITK----------------GNVTIKVWDIGGQPR   72 (101)
Q Consensus        13 ~~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~----~~~t~~~~~~~~~~----------------~~~~~~i~D~~G~~~   72 (101)
                      ..|++.+ +|.+++|||||++++.+..+...    +.+++|..+...+.                +...+.+|||+|++.
T Consensus         3 r~piV~I-iG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~   81 (590)
T TIGR00491         3 RSPIVSV-LGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA   81 (590)
T ss_pred             CCCEEEE-ECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh
Confidence            4566654 79999999999999998766533    33455544422110                112388999999998


Q ss_pred             cce------------EEEEECCC---hhhHHHHH
Q psy2967          73 FRS------------IYMVDAAD---TDKLEASR   91 (101)
Q Consensus        73 ~~~------------i~v~d~~~---~~sf~~~~   91 (101)
                      |..            ++|+|.++   +++++.+.
T Consensus        82 f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~  115 (590)
T TIGR00491        82 FTNLRKRGGALADLAILIVDINEGFKPQTQEALN  115 (590)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH
Confidence            766            99999987   66776654

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=98.99  E-value=1.7e-09  Score=77.46  Aligned_cols=83  Identities=18%  Similarity=0.183  Sum_probs=55.1

Q ss_pred             eeeeEeccCCCcceeeeeccccCcCC-CCC-CCccceEEEEEecC-cEEEEEEeeCCCCcc------------ce-----
Q psy2967          16 TVGFNMRKITKGNVTIWPVPLSGQFS-QDM-IPTVGFNMRKITKG-NVTIKVWDIGGQPRF------------RS-----   75 (101)
Q Consensus        16 ~~g~~vG~~~vGKtsl~~~~~~~~~~-~~~-~~t~~~~~~~~~~~-~~~~~i~D~~G~~~~------------~~-----   75 (101)
                      -+++ ||.||||||||+++++..+.. .+| -.|...++-.+... +..+.+||++|...-            +.     
T Consensus       160 dVgl-VG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~  238 (424)
T PRK12297        160 DVGL-VGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR  238 (424)
T ss_pred             cEEE-EcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence            4443 599999999999999975421 122 23444554444444 678999999996320            00     


Q ss_pred             --EEEEECCCh---hhHHHHHHHHHHHHH
Q psy2967          76 --IYMVDAADT---DKLEASRNELHALIE   99 (101)
Q Consensus        76 --i~v~d~~~~---~sf~~~~~~~~~i~~   99 (101)
                        ++|+|+++.   +++++...|.+++..
T Consensus       239 llI~VID~s~~~~~dp~e~~~~i~~EL~~  267 (424)
T PRK12297        239 VIVHVIDMSGSEGRDPIEDYEKINKELKL  267 (424)
T ss_pred             EEEEEEeCCccccCChHHHHHHHHHHHhh
Confidence              889999864   677777777766643

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=98.99  E-value=8.9e-10  Score=70.59  Aligned_cols=56  Identities=13%  Similarity=0.069  Sum_probs=39.4

Q ss_pred             cceeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEE-EecCcEEEEEEeeCCC
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK-ITKGNVTIKVWDIGGQ   70 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~i~D~~G~   70 (101)
                      .|-++ .+|.+|||||||++++..+++...+.++.+..... ....+..+.+||++|.
T Consensus        24 ~~~v~-ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~   80 (196)
T PRK00454         24 GPEIA-FAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGY   80 (196)
T ss_pred             CCEEE-EEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCC
Confidence            34444 36999999999999999887666667776643221 1112478999999995

>TIGR00436 era GTP-binding protein Era

Probab=98.99  E-value=1.2e-09  Score=73.94  Aligned_cols=68  Identities=16%  Similarity=0.145  Sum_probs=47.2

Q ss_pred             eccCCCcceeeeeccccCcCC--CCCCCccceEEEE-EecCcEEEEEEeeCCCCccce--------------------EE
Q psy2967          21 MRKITKGNVTIWPVPLSGQFS--QDMIPTVGFNMRK-ITKGNVTIKVWDIGGQPRFRS--------------------IY   77 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~--~~~~~t~~~~~~~-~~~~~~~~~i~D~~G~~~~~~--------------------i~   77 (101)
                      +|.+|||||||++++.+..+.  .....|....... ....+..+.+|||+|......                    ++
T Consensus         6 iG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~   85 (270)
T TIGR00436         6 LGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILF   85 (270)
T ss_pred             ECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEE
Confidence            599999999999999987643  2333344433332 334556799999999753210                    88


Q ss_pred             EEECCChhhHH
Q psy2967          78 MVDAADTDKLE   88 (101)
Q Consensus        78 v~d~~~~~sf~   88 (101)
                      |+|.++..+.+
T Consensus        86 VvD~~~~~~~~   96 (270)
T TIGR00436        86 VVDSDQWNGDG   96 (270)
T ss_pred             EEECCCCCchH
Confidence            99999887764

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>KOG3883|consensus

Probab=98.98  E-value=1.3e-09  Score=68.30  Aligned_cols=75  Identities=12%  Similarity=0.175  Sum_probs=56.6

Q ss_pred             eEeccCCCcceeeeeccccCcCC--CCCCCccceEEE-EE---ecCcEEEEEEeeCCCCccce-------------EEEE
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFS--QDMIPTVGFNMR-KI---TKGNVTIKVWDIGGQPRFRS-------------IYMV   79 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~--~~~~~t~~~~~~-~~---~~~~~~~~i~D~~G~~~~~~-------------i~v~   79 (101)
                      +++|..+||||+++.++..+...  .++.||+...|. .+   .+..-.+.++||+|-.....             ++||
T Consensus        13 vVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVY   92 (198)
T KOG3883|consen   13 VVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVY   92 (198)
T ss_pred             EEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCceEEEEe
Confidence            44588899999999998876644  367899885553 23   23446889999998765522             9999


Q ss_pred             ECCChhhHHHHHHH
Q psy2967          80 DAADTDKLEASRNE   93 (101)
Q Consensus        80 d~~~~~sf~~~~~~   93 (101)
                      |..|++||+.+...
T Consensus        93 s~~d~eSf~rv~ll  106 (198)
T KOG3883|consen   93 SPMDPESFQRVELL  106 (198)
T ss_pred             cCCCHHHHHHHHHH
Confidence            99999999988433

>PRK00093 GTP-binding protein Der; Reviewed

Probab=98.97  E-value=1.9e-09  Score=77.12  Aligned_cols=80  Identities=18%  Similarity=0.138  Sum_probs=52.3

Q ss_pred             ceeeeEeccCCCcceeeeeccccCcC--CCCCCC-ccceEEEEEecCcEEEEEEeeCCCCc--------cce--------
Q psy2967          15 PTVGFNMRKITKGNVTIWPVPLSGQF--SQDMIP-TVGFNMRKITKGNVTIKVWDIGGQPR--------FRS--------   75 (101)
Q Consensus        15 ~~~g~~vG~~~vGKtsl~~~~~~~~~--~~~~~~-t~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~--------   75 (101)
                      |.+.+ +|.+|||||||++++.....  ...+.. |....+..+...+..+.+|||+|++.        ++.        
T Consensus         2 ~~I~i-vG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~   80 (435)
T PRK00093          2 PVVAI-VGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEE   80 (435)
T ss_pred             CEEEE-ECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence            34443 59999999999999997653  223222 22333344566678999999999986        111        


Q ss_pred             ----EEEEECCChhhH--HHHHHHHH
Q psy2967          76 ----IYMVDAADTDKL--EASRNELH   95 (101)
Q Consensus        76 ----i~v~d~~~~~sf--~~~~~~~~   95 (101)
                          |+|+|.++..+.  .++..|+.
T Consensus        81 ad~il~vvd~~~~~~~~~~~~~~~l~  106 (435)
T PRK00093         81 ADVILFVVDGRAGLTPADEEIAKILR  106 (435)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHH
Confidence                889999875443  23344544

>PRK03003 GTP-binding protein Der; Reviewed

Probab=98.94  E-value=2.3e-09  Score=77.72  Aligned_cols=77  Identities=17%  Similarity=0.185  Sum_probs=51.8

Q ss_pred             EeccCCCcceeeeeccccCcCC-CCCCCccceE--EEEEecCcEEEEEEeeCCC----------Cccc---------e--
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFS-QDMIPTVGFN--MRKITKGNVTIKVWDIGGQ----------PRFR---------S--   75 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~-~~~~~t~~~~--~~~~~~~~~~~~i~D~~G~----------~~~~---------~--   75 (101)
                      .+|.+|||||||++++++.++. ....|+...+  ...+..++..+.+|||+|.          +.+.         .  
T Consensus       216 iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad  295 (472)
T PRK03003        216 LVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAE  295 (472)
T ss_pred             EECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCC
Confidence            3699999999999999987642 1222222222  2234556667889999995          2221         1  


Q ss_pred             --EEEEECCChhhHHHHHHHHHHH
Q psy2967          76 --IYMVDAADTDKLEASRNELHAL   97 (101)
Q Consensus        76 --i~v~d~~~~~sf~~~~~~~~~i   97 (101)
                        ++|+|.++..+++.+. ++..+
T Consensus       296 ~vilV~Da~~~~s~~~~~-~~~~~  318 (472)
T PRK03003        296 VAVVLIDASEPISEQDQR-VLSMV  318 (472)
T ss_pred             EEEEEEeCCCCCCHHHHH-HHHHH
Confidence              8999999998888774 44443

>TIGR01393 lepA GTP-binding protein LepA

Probab=98.93  E-value=1.3e-09  Score=81.04  Aligned_cols=75  Identities=17%  Similarity=0.297  Sum_probs=53.0

Q ss_pred             eccCCCcceeeeeccccC-------cCCCCCCCc------cceEEE----EE-----ecCcEEEEEEeeCCCCccce---
Q psy2967          21 MRKITKGNVTIWPVPLSG-------QFSQDMIPT------VGFNMR----KI-----TKGNVTIKVWDIGGQPRFRS---   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~-------~~~~~~~~t------~~~~~~----~~-----~~~~~~~~i~D~~G~~~~~~---   75 (101)
                      +|..++|||||+.+++..       ++...+..+      .|..+.    .+     ++..+.+.+|||+|+..|..   
T Consensus         9 IGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~~~v~   88 (595)
T TIGR01393         9 IAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVS   88 (595)
T ss_pred             ECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHHHHHH
Confidence            599999999999999864       233333333      244332    12     24458999999999998865   


Q ss_pred             ---------EEEEECCChhhHHHHHHHHH
Q psy2967          76 ---------IYMVDAADTDKLEASRNELH   95 (101)
Q Consensus        76 ---------i~v~d~~~~~sf~~~~~~~~   95 (101)
                               |+|+|.++..+++....|..
T Consensus        89 ~~l~~aD~aILVvDat~g~~~qt~~~~~~  117 (595)
T TIGR01393        89 RSLAACEGALLLVDAAQGIEAQTLANVYL  117 (595)
T ss_pred             HHHHhCCEEEEEecCCCCCCHhHHHHHHH
Confidence                     99999999777766655543

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=98.93  E-value=2.9e-09  Score=70.88  Aligned_cols=65  Identities=12%  Similarity=0.093  Sum_probs=45.3

Q ss_pred             eccCCCcceeeeeccccCcC-CCCCC-CccceEEEEEecCcEEEEEEeeCCCCccc---------------e----EEEE
Q psy2967          21 MRKITKGNVTIWPVPLSGQF-SQDMI-PTVGFNMRKITKGNVTIKVWDIGGQPRFR---------------S----IYMV   79 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~-~~~~~-~t~~~~~~~~~~~~~~~~i~D~~G~~~~~---------------~----i~v~   79 (101)
                      +|.+|||||||++++.+... ...+. +|.......+...+..+++||++|..+..               .    ++|+
T Consensus         6 vG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~   85 (233)
T cd01896           6 VGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVL   85 (233)
T ss_pred             ECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEe
Confidence            68899999999999997642 12222 33333333455678899999999974322               1    7899


Q ss_pred             ECCChh
Q psy2967          80 DAADTD   85 (101)
Q Consensus        80 d~~~~~   85 (101)
                      |.++++
T Consensus        86 D~t~~~   91 (233)
T cd01896          86 DATKPE   91 (233)
T ss_pred             cCCcch
Confidence            998765

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd01889 SelB_euk SelB subfamily

Probab=98.91  E-value=9.1e-10  Score=70.85  Aligned_cols=68  Identities=15%  Similarity=0.222  Sum_probs=45.2

Q ss_pred             eccCCCcceeeeeccccC----cCCCCC-----CCccceEEEEEe--------------cCcEEEEEEeeCCCCccce--
Q psy2967          21 MRKITKGNVTIWPVPLSG----QFSQDM-----IPTVGFNMRKIT--------------KGNVTIKVWDIGGQPRFRS--   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~----~~~~~~-----~~t~~~~~~~~~--------------~~~~~~~i~D~~G~~~~~~--   75 (101)
                      +|.+++|||||++++...    .+...+     ..|++..+..+.              .++..+.+||++|+..+..  
T Consensus         6 ~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~   85 (192)
T cd01889           6 LGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHASLIRTI   85 (192)
T ss_pred             EecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHHHHHHH
Confidence            599999999999999862    122111     244454433222              2378999999999876422  


Q ss_pred             ----------EEEEECCChhhHH
Q psy2967          76 ----------IYMVDAADTDKLE   88 (101)
Q Consensus        76 ----------i~v~d~~~~~sf~   88 (101)
                                ++|+|.++..+.+
T Consensus        86 ~~~~~~~d~vi~VvD~~~~~~~~  108 (192)
T cd01889          86 IGGAQIIDLMLLVVDATKGIQTQ  108 (192)
T ss_pred             HHHHhhCCEEEEEEECCCCccHH
Confidence                      8899998754433

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=98.89  E-value=2.8e-09  Score=67.87  Aligned_cols=56  Identities=11%  Similarity=0.050  Sum_probs=37.5

Q ss_pred             ccceeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEE--EEecCcEEEEEEeeCCC
Q psy2967          13 MIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KITKGNVTIKVWDIGGQ   70 (101)
Q Consensus        13 ~~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~D~~G~   70 (101)
                      ..+.+. .+|++|+|||||++++....+...+.++.+....  .....+ .+.+||++|.
T Consensus        17 ~~~~i~-ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~   74 (179)
T TIGR03598        17 DGPEIA-FAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND-GFRLVDLPGY   74 (179)
T ss_pred             CCCEEE-EEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC-cEEEEeCCCC
Confidence            344443 4699999999999999987655555555553321  122122 6899999995

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=98.89  E-value=2.5e-09  Score=67.68  Aligned_cols=67  Identities=18%  Similarity=0.142  Sum_probs=48.7

Q ss_pred             eccCCCcceeeeeccccCcCCCCCCC------------------ccceEEEEEecCcEEEEEEeeCCCCccce-------
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQDMIP------------------TVGFNMRKITKGNVTIKVWDIGGQPRFRS-------   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~~~~~------------------t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------   75 (101)
                      +|.+|+|||||++.+..........+                  |.......+...+..+.+||++|+..+..       
T Consensus         5 ~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~   84 (189)
T cd00881           5 AGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVIRGLS   84 (189)
T ss_pred             EeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHHHHHH
Confidence            58999999999999998766543322                  22233334556678999999999876644       


Q ss_pred             -----EEEEECCChhhH
Q psy2967          76 -----IYMVDAADTDKL   87 (101)
Q Consensus        76 -----i~v~d~~~~~sf   87 (101)
                           ++|+|.++..+.
T Consensus        85 ~~d~~i~v~d~~~~~~~  101 (189)
T cd00881          85 VSDGAILVVDANEGVQP  101 (189)
T ss_pred             hcCEEEEEEECCCCCcH
Confidence                 889998876544

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=98.89  E-value=3.2e-09  Score=78.90  Aligned_cols=52  Identities=15%  Similarity=0.153  Sum_probs=38.1

Q ss_pred             ccCCCcceeeeeccccCcCCCCCCCccceEE--EEEecCcEEEEEEeeCCCCcc
Q psy2967          22 RKITKGNVTIWPVPLSGQFSQDMIPTVGFNM--RKITKGNVTIKVWDIGGQPRF   73 (101)
Q Consensus        22 G~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G~~~~   73 (101)
                      |++|||||||++++.+..+.....|+...+.  ..+..++..+++||++|+.++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~   54 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSL   54 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCcccc
Confidence            7899999999999998765433344444433  235566778999999998764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=98.89  E-value=3.9e-09  Score=80.38  Aligned_cols=79  Identities=16%  Similarity=0.251  Sum_probs=55.3

Q ss_pred             ccccceeeeEeccCCCcceeeeeccccCcCCCCCCCcc--ceEEEEEecCcEEEEEEeeCCCCccce------------E
Q psy2967          11 QDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTV--GFNMRKITKGNVTIKVWDIGGQPRFRS------------I   76 (101)
Q Consensus        11 ~~~~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~--~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i   76 (101)
                      ....|++.+ +|..++|||||++++..+.+.....+.+  ......+...+..+.+|||+|++.|..            |
T Consensus       287 ~~R~pvV~I-mGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaI  365 (787)
T PRK05306        287 VPRPPVVTI-MGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVV  365 (787)
T ss_pred             ccCCCEEEE-ECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence            345666664 6999999999999998876654332222  122233455568899999999998876            8


Q ss_pred             EEEECCC---hhhHHHH
Q psy2967          77 YMVDAAD---TDKLEAS   90 (101)
Q Consensus        77 ~v~d~~~---~~sf~~~   90 (101)
                      +|||.++   +++.+.+
T Consensus       366 LVVdAddGv~~qT~e~i  382 (787)
T PRK05306        366 LVVAADDGVMPQTIEAI  382 (787)
T ss_pred             EEEECCCCCCHhHHHHH
Confidence            8999987   4554443

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.89  E-value=8.9e-10  Score=70.87  Aligned_cols=78  Identities=19%  Similarity=0.399  Sum_probs=51.8

Q ss_pred             eccCCCcceeeeeccccCcCCCCCCCccceEEEE-E-ecCcEEEEEEeeCCCCccce---------------EEEEECCC
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK-I-TKGNVTIKVWDIGGQPRFRS---------------IYMVDAAD   83 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~-~-~~~~~~~~i~D~~G~~~~~~---------------i~v~d~~~   83 (101)
                      +|++|+|||+|..++..++..+.+ .++..+... + ...+-.+.+.|++|+++.+.               |||.|.+.
T Consensus         9 ~Gps~SGKTaLf~~L~~~~~~~T~-tS~e~n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~   87 (181)
T PF09439_consen    9 VGPSGSGKTALFSQLVNGKTVPTV-TSMENNIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSST   87 (181)
T ss_dssp             E-STTSSHHHHHHHHHHSS---B----SSEEEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTT
T ss_pred             EcCCCCCHHHHHHHHhcCCcCCee-ccccCCceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCcc
Confidence            477799999999999999776433 333444322 2 23556899999999998876               99999874


Q ss_pred             -hhhHHHHHHHHHHHHH
Q psy2967          84 -TDKLEASRNELHALIE   99 (101)
Q Consensus        84 -~~sf~~~~~~~~~i~~   99 (101)
                       ...+.++.+.+-+++.
T Consensus        88 ~~~~~~~~Ae~Ly~iL~  104 (181)
T PF09439_consen   88 DQKELRDVAEYLYDILS  104 (181)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHH
Confidence             4556677677766654

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=98.83  E-value=9.8e-09  Score=74.86  Aligned_cols=77  Identities=19%  Similarity=0.207  Sum_probs=51.3

Q ss_pred             eccCCCcceeeeeccccCcCC-CC-CCCccceEEEEEecCcEEEEEEeeCCCCc------------cce-------EEEE
Q psy2967          21 MRKITKGNVTIWPVPLSGQFS-QD-MIPTVGFNMRKITKGNVTIKVWDIGGQPR------------FRS-------IYMV   79 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~-~~-~~~t~~~~~~~~~~~~~~~~i~D~~G~~~------------~~~-------i~v~   79 (101)
                      ||.||||||||++++...... .+ ..+|+..+...++..+..+.+||++|.-.            ++.       |+|+
T Consensus       165 VG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VV  244 (500)
T PRK12296        165 VGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVV  244 (500)
T ss_pred             EEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEE
Confidence            588999999999999865432 22 23555666666777778999999999521            111       7889


Q ss_pred             ECCC----hhhHHHHHHHHHHH
Q psy2967          80 DAAD----TDKLEASRNELHAL   97 (101)
Q Consensus        80 d~~~----~~sf~~~~~~~~~i   97 (101)
                      |+++    ++.++....|..++
T Consensus       245 D~s~~e~~rdp~~d~~~i~~EL  266 (500)
T PRK12296        245 DCATLEPGRDPLSDIDALEAEL  266 (500)
T ss_pred             CCcccccccCchhhHHHHHHHH
Confidence            9985    33444444444443

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=98.82  E-value=3.6e-09  Score=78.48  Aligned_cols=70  Identities=16%  Similarity=0.265  Sum_probs=51.7

Q ss_pred             eccCCCcceeeeecccc---CcCCCCCCCcc--ceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          21 MRKITKGNVTIWPVPLS---GQFSQDMIPTV--GFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~---~~~~~~~~~t~--~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      +|.+++|||||++++.+   +.+.+++.+++  ...+..+..++..+.+||++|+++|..            ++|+|.++
T Consensus         6 iG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~   85 (581)
T TIGR00475         6 AGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADE   85 (581)
T ss_pred             ECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCC
Confidence            58999999999999985   33443444433  344444666668999999999988765            89999987


Q ss_pred             ---hhhHHHH
Q psy2967          84 ---TDKLEAS   90 (101)
Q Consensus        84 ---~~sf~~~   90 (101)
                         +++++.+
T Consensus        86 G~~~qT~ehl   95 (581)
T TIGR00475        86 GVMTQTGEHL   95 (581)
T ss_pred             CCcHHHHHHH
Confidence               5666655

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=98.82  E-value=7.9e-09  Score=76.72  Aligned_cols=77  Identities=19%  Similarity=0.273  Sum_probs=52.0

Q ss_pred             ccceeeeEeccCCCcceeeeeccccCcCCCCCCCccc--eEEEEEecCc-EEEEEEeeCCCCccce------------EE
Q psy2967          13 MIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVG--FNMRKITKGN-VTIKVWDIGGQPRFRS------------IY   77 (101)
Q Consensus        13 ~~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~--~~~~~~~~~~-~~~~i~D~~G~~~~~~------------i~   77 (101)
                      .-|.+. .+|..++|||||++++....+.....+.+.  .....+...+ ..+.+|||+|+++|..            ++
T Consensus        86 r~p~V~-I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaIL  164 (587)
T TIGR00487        86 RPPVVT-IMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVL  164 (587)
T ss_pred             CCCEEE-EECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence            445554 369999999999999998877654433222  2222333322 3899999999998765            88


Q ss_pred             EEECCC---hhhHHHH
Q psy2967          78 MVDAAD---TDKLEAS   90 (101)
Q Consensus        78 v~d~~~---~~sf~~~   90 (101)
                      |+|.++   +++.+.+
T Consensus       165 VVda~dgv~~qT~e~i  180 (587)
T TIGR00487       165 VVAADDGVMPQTIEAI  180 (587)
T ss_pred             EEECCCCCCHhHHHHH
Confidence            999876   4454443

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd01895 EngA2 EngA2 subfamily

Probab=98.81  E-value=1.7e-08  Score=62.79  Aligned_cols=71  Identities=13%  Similarity=0.078  Sum_probs=46.4

Q ss_pred             EeccCCCcceeeeeccccCcCC--CCCCCcc-ceEEEEEecCcEEEEEEeeCCCCcc----------c---------e--
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFS--QDMIPTV-GFNMRKITKGNVTIKVWDIGGQPRF----------R---------S--   75 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~--~~~~~t~-~~~~~~~~~~~~~~~i~D~~G~~~~----------~---------~--   75 (101)
                      .+|++|+|||||++++......  .....+. ......+...+..+.+||++|....          .         .  
T Consensus         7 i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d   86 (174)
T cd01895           7 IIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERAD   86 (174)
T ss_pred             EEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcC
Confidence            4699999999999999876532  1222221 2222234445667889999996322          1         1  


Q ss_pred             --EEEEECCChhhHHHH
Q psy2967          76 --IYMVDAADTDKLEAS   90 (101)
Q Consensus        76 --i~v~d~~~~~sf~~~   90 (101)
                        ++|+|.+++.+....
T Consensus        87 ~vi~v~d~~~~~~~~~~  103 (174)
T cd01895          87 VVLLVIDATEGITEQDL  103 (174)
T ss_pred             eEEEEEeCCCCcchhHH
Confidence              889999988776554

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04163 Era Era subfamily

Probab=98.80  E-value=1.2e-08  Score=62.87  Aligned_cols=64  Identities=17%  Similarity=0.201  Sum_probs=42.4

Q ss_pred             eccCCCcceeeeeccccCcCCCC--CCCccceEE-EEEecCcEEEEEEeeCCCCccce--------------------EE
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQD--MIPTVGFNM-RKITKGNVTIKVWDIGGQPRFRS--------------------IY   77 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~~--~~~t~~~~~-~~~~~~~~~~~i~D~~G~~~~~~--------------------i~   77 (101)
                      +|.+|+|||||++++.+.+....  ...+..... .........+.+||++|......                    ++
T Consensus         9 ~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~   88 (168)
T cd04163           9 VGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLF   88 (168)
T ss_pred             ECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEE
Confidence            58999999999999987654311  112221111 22445568899999999753211                    88


Q ss_pred             EEECCCh
Q psy2967          78 MVDAADT   84 (101)
Q Consensus        78 v~d~~~~   84 (101)
                      |+|.+++
T Consensus        89 v~d~~~~   95 (168)
T cd04163          89 VVDASEP   95 (168)
T ss_pred             EEECCCc
Confidence            9999887

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.79  E-value=1.7e-08  Score=76.43  Aligned_cols=69  Identities=19%  Similarity=0.161  Sum_probs=46.0

Q ss_pred             cceeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEE----EEecCcEEEEEEeeCCCCccc--------e------
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFR--------S------   75 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~D~~G~~~~~--------~------   75 (101)
                      +|.+. .+|.+|||||||++++++.... ...++.|....    .....+..+.+|||+|.+...        .      
T Consensus       275 ~~~V~-IvG~~nvGKSSL~n~l~~~~~~-iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~  352 (712)
T PRK09518        275 VGVVA-IVGRPNVGKSTLVNRILGRREA-VVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV  352 (712)
T ss_pred             CcEEE-EECCCCCCHHHHHHHHhCCCce-eecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence            34444 3699999999999999976532 22333333322    234567889999999976311        1      


Q ss_pred             ------EEEEECCCh
Q psy2967          76 ------IYMVDAADT   84 (101)
Q Consensus        76 ------i~v~d~~~~   84 (101)
                            |+|+|.++.
T Consensus       353 ~~aD~iL~VvDa~~~  367 (712)
T PRK09518        353 SLADAVVFVVDGQVG  367 (712)
T ss_pred             HhCCEEEEEEECCCC
Confidence                  899999764

>PRK04004 translation initiation factor IF-2; Validated

Probab=98.79  E-value=1e-08  Score=76.12  Aligned_cols=79  Identities=18%  Similarity=0.237  Sum_probs=52.5

Q ss_pred             cccceeeeEeccCCCcceeeeeccccCcCCCC----CCCccceEEEEEe------cCc-----E-----EEEEEeeCCCC
Q psy2967          12 DMIPTVGFNMRKITKGNVTIWPVPLSGQFSQD----MIPTVGFNMRKIT------KGN-----V-----TIKVWDIGGQP   71 (101)
Q Consensus        12 ~~~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~----~~~t~~~~~~~~~------~~~-----~-----~~~i~D~~G~~   71 (101)
                      .+-|++.+ +|.+++|||||++++.+......    +.+++|..+...+      +..     .     .+.+|||+|++
T Consensus         4 ~R~p~V~i-~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e   82 (586)
T PRK04004          4 LRQPIVVV-LGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE   82 (586)
T ss_pred             CCCcEEEE-ECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence            34555553 69999999999999986543322    2235565443211      111     1     26899999999


Q ss_pred             ccce------------EEEEECCC---hhhHHHHH
Q psy2967          72 RFRS------------IYMVDAAD---TDKLEASR   91 (101)
Q Consensus        72 ~~~~------------i~v~d~~~---~~sf~~~~   91 (101)
                      .|..            ++|+|.++   +++++.+.
T Consensus        83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~  117 (586)
T PRK04004         83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAIN  117 (586)
T ss_pred             HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH
Confidence            8875            89999997   77777664

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=98.78  E-value=2.3e-08  Score=71.39  Aligned_cols=72  Identities=15%  Similarity=0.102  Sum_probs=48.9

Q ss_pred             EeccCCCcceeeeeccccCcCC--CCCCCccc-eEEEEEecCcEEEEEEeeCCCCccce---------------------
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFS--QDMIPTVG-FNMRKITKGNVTIKVWDIGGQPRFRS---------------------   75 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~--~~~~~t~~-~~~~~~~~~~~~~~i~D~~G~~~~~~---------------------   75 (101)
                      .+|.+++|||||++++.+.+..  ..+..|.. .....+..++..+.+|||+|..+...                     
T Consensus       177 ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad  256 (429)
T TIGR03594       177 IIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERAD  256 (429)
T ss_pred             EECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCC
Confidence            4699999999999999976532  22333322 22223445566899999999743211                     


Q ss_pred             --EEEEECCChhhHHHHH
Q psy2967          76 --IYMVDAADTDKLEASR   91 (101)
Q Consensus        76 --i~v~d~~~~~sf~~~~   91 (101)
                        |+|+|.++..+.++..
T Consensus       257 ~~ilV~D~~~~~~~~~~~  274 (429)
T TIGR03594       257 VVLLVLDATEGITEQDLR  274 (429)
T ss_pred             EEEEEEECCCCccHHHHH
Confidence              8999999887776653

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd00880 Era_like Era (E

Probab=98.77  E-value=2.2e-08  Score=60.87  Aligned_cols=71  Identities=14%  Similarity=0.111  Sum_probs=47.4

Q ss_pred             eccCCCcceeeeeccccCcCCC--CCCC-ccceEEEEEecC-cEEEEEEeeCCCCccce-------------------EE
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQ--DMIP-TVGFNMRKITKG-NVTIKVWDIGGQPRFRS-------------------IY   77 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~--~~~~-t~~~~~~~~~~~-~~~~~i~D~~G~~~~~~-------------------i~   77 (101)
                      +|.+|+|||||++++.......  ...+ |........... ...+.+||++|......                   ++
T Consensus         2 ~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~   81 (163)
T cd00880           2 FGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLILF   81 (163)
T ss_pred             cCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEE
Confidence            5889999999999998765441  1222 222222223333 67899999999764321                   88


Q ss_pred             EEECCChhhHHHHH
Q psy2967          78 MVDAADTDKLEASR   91 (101)
Q Consensus        78 v~d~~~~~sf~~~~   91 (101)
                      |+|.++..+.....
T Consensus        82 v~~~~~~~~~~~~~   95 (163)
T cd00880          82 VVDADLRADEEEEK   95 (163)
T ss_pred             EEeCCCCCCHHHHH
Confidence            89999887766654

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=98.76  E-value=3.4e-08  Score=58.66  Aligned_cols=52  Identities=13%  Similarity=-0.004  Sum_probs=36.4

Q ss_pred             EeccCCCcceeeeeccccCcC---CCCCCCccceEEEEEecCcEEEEEEeeCCCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQF---SQDMIPTVGFNMRKITKGNVTIKVWDIGGQP   71 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~   71 (101)
                      .+|.+|+|||||++.+.+...   ......|....+..+...+..+.++|++|-.
T Consensus         4 iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~   58 (116)
T PF01926_consen    4 IIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGIN   58 (116)
T ss_dssp             EEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCS
T ss_pred             EECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCc
Confidence            368899999999999997432   1122333445444556677888899999964

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=98.76  E-value=7.5e-09  Score=61.51  Aligned_cols=65  Identities=17%  Similarity=0.167  Sum_probs=46.6

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCC-CccceEEEEEecCcEEEEEEeeCCCCccce-EEEEECCChhhHHHHHHHHHHH
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMI-PTVGFNMRKITKGNVTIKVWDIGGQPRFRS-IYMVDAADTDKLEASRNELHAL   97 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-i~v~d~~~~~sf~~~~~~~~~i   97 (101)
                      .+|+.|||||+|+.|+..+.+...+. +|++            +..+|..-.+.+.. ++||+.+++++++++  |...+
T Consensus         5 ~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~------------~~~~~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i   70 (124)
T smart00010        5 GIGDSGVGKVGKSARFVQFPFDYVPTVFTIG------------IDVYDPTSYESFDVVLQCWRVDDRDSADNK--NVPEV   70 (124)
T ss_pred             EECCCChhHHHHHHHHhcCCccccCceehhh------------hhhccccccCCCCEEEEEEEccCHHHHHHH--hHHHH
Confidence            46999999999999999888876666 6666            33344433333344 557999999999876  76655


Q ss_pred             H
Q psy2967          98 I   98 (101)
Q Consensus        98 ~   98 (101)
                      +
T Consensus        71 ~   71 (124)
T smart00010       71 L   71 (124)
T ss_pred             H
Confidence            4

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=98.75  E-value=2.5e-08  Score=71.18  Aligned_cols=67  Identities=15%  Similarity=0.133  Sum_probs=45.6

Q ss_pred             EeccCCCcceeeeeccccCcC--CCCCCCc-cceEEEEEecCcEEEEEEeeCCCCcc--------ce------------E
Q psy2967          20 NMRKITKGNVTIWPVPLSGQF--SQDMIPT-VGFNMRKITKGNVTIKVWDIGGQPRF--------RS------------I   76 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~--~~~~~~t-~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~------------i   76 (101)
                      .+|.+|||||||++++.+...  ...+..+ .......+...+..+.+|||+|....        ..            +
T Consensus         4 ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl   83 (429)
T TIGR03594         4 IVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVIL   83 (429)
T ss_pred             EECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEE
Confidence            369999999999999998653  2222222 22333445667788999999996321        11            8


Q ss_pred             EEEECCChhh
Q psy2967          77 YMVDAADTDK   86 (101)
Q Consensus        77 ~v~d~~~~~s   86 (101)
                      +|+|..+..+
T Consensus        84 ~vvD~~~~~~   93 (429)
T TIGR03594        84 FVVDGREGLT   93 (429)
T ss_pred             EEEeCCCCCC
Confidence            8999987544

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=98.74  E-value=1.7e-08  Score=76.52  Aligned_cols=77  Identities=23%  Similarity=0.304  Sum_probs=53.1

Q ss_pred             ccceeeeEeccCCCcceeeeeccccCcCCCCCCC----ccceEEEEEe--cCcEEEEEEeeCCCCccce-----------
Q psy2967          13 MIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIP----TVGFNMRKIT--KGNVTIKVWDIGGQPRFRS-----------   75 (101)
Q Consensus        13 ~~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~----t~~~~~~~~~--~~~~~~~i~D~~G~~~~~~-----------   75 (101)
                      ..|.+.+ +|..++|||||++++....+.....+    .++.....+.  ..+..+.+|||+|++.|..           
T Consensus       243 r~p~V~I-vGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi  321 (742)
T CHL00189        243 RPPIVTI-LGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI  321 (742)
T ss_pred             cCCEEEE-ECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence            4556554 69999999999999998776543322    2232222222  3468999999999998765           


Q ss_pred             -EEEEECCC---hhhHHHH
Q psy2967          76 -IYMVDAAD---TDKLEAS   90 (101)
Q Consensus        76 -i~v~d~~~---~~sf~~~   90 (101)
                       |+|+|.++   +++++.+
T Consensus       322 aILVVDA~dGv~~QT~E~I  340 (742)
T CHL00189        322 AILIIAADDGVKPQTIEAI  340 (742)
T ss_pred             EEEEEECcCCCChhhHHHH
Confidence             88999887   4555444

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=98.74  E-value=1e-08  Score=63.37  Aligned_cols=50  Identities=10%  Similarity=0.061  Sum_probs=36.5

Q ss_pred             eccCCCcceeeeeccccCcCCCCCCCccceEEEE--EecCcEEEEEEeeCCCC
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK--ITKGNVTIKVWDIGGQP   71 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~i~D~~G~~   71 (101)
                      +|++|+|||||++.+.++.+.....++.+.....  +.... .+.+||++|..
T Consensus         5 ~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~D~~g~~   56 (170)
T cd01876           5 AGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND-KFRLVDLPGYG   56 (170)
T ss_pred             EcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC-eEEEecCCCcc
Confidence            6889999999999999776666666666644322  22222 89999999843

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.73  E-value=1.8e-08  Score=76.35  Aligned_cols=71  Identities=11%  Similarity=0.142  Sum_probs=49.7

Q ss_pred             eccCCCcceeeeeccccCcC--CCCCCCccceEE-EEEecCcEEEEEEeeCCCCc----------c---------ce---
Q psy2967          21 MRKITKGNVTIWPVPLSGQF--SQDMIPTVGFNM-RKITKGNVTIKVWDIGGQPR----------F---------RS---   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~--~~~~~~t~~~~~-~~~~~~~~~~~i~D~~G~~~----------~---------~~---   75 (101)
                      +|.+|||||||++++.+.+.  ..++.+|....+ ..+..++..+.+|||+|..+          +         +.   
T Consensus       456 vG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~adv  535 (712)
T PRK09518        456 VGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSEL  535 (712)
T ss_pred             ECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCE
Confidence            69999999999999998764  334444433222 23445566678999999531          1         11   


Q ss_pred             -EEEEECCChhhHHHHH
Q psy2967          76 -IYMVDAADTDKLEASR   91 (101)
Q Consensus        76 -i~v~d~~~~~sf~~~~   91 (101)
                       ++|+|.++..+++...
T Consensus       536 vilViDat~~~s~~~~~  552 (712)
T PRK09518        536 ALFLFDASQPISEQDLK  552 (712)
T ss_pred             EEEEEECCCCCCHHHHH
Confidence             8899999998887764

>PRK00089 era GTPase Era; Reviewed

Probab=98.73  E-value=2.5e-08  Score=68.06  Aligned_cols=63  Identities=19%  Similarity=0.281  Sum_probs=43.2

Q ss_pred             eccCCCcceeeeeccccCcCCC--CCCCccceEEEE-EecCcEEEEEEeeCCCCccce--------------------EE
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQ--DMIPTVGFNMRK-ITKGNVTIKVWDIGGQPRFRS--------------------IY   77 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~--~~~~t~~~~~~~-~~~~~~~~~i~D~~G~~~~~~--------------------i~   77 (101)
                      +|.+|||||||++++++.+...  ....|....... ....+..+.+|||+|......                    ++
T Consensus        11 iG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~   90 (292)
T PRK00089         11 VGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLF   90 (292)
T ss_pred             ECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEE
Confidence            5999999999999999776431  222333333332 334558899999999743211                    88


Q ss_pred             EEECCC
Q psy2967          78 MVDAAD   83 (101)
Q Consensus        78 v~d~~~   83 (101)
                      |+|.++
T Consensus        91 vvd~~~   96 (292)
T PRK00089         91 VVDADE   96 (292)
T ss_pred             EEeCCC
Confidence            999988

>cd04167 Snu114p Snu114p subfamily

Probab=98.70  E-value=2.8e-08  Score=65.04  Aligned_cols=69  Identities=10%  Similarity=0.239  Sum_probs=46.2

Q ss_pred             eccCCCcceeeeeccccCcCCCC-----------C------CCccceEEE----EE-----ecCcEEEEEEeeCCCCccc
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQD-----------M------IPTVGFNMR----KI-----TKGNVTIKVWDIGGQPRFR   74 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~~-----------~------~~t~~~~~~----~~-----~~~~~~~~i~D~~G~~~~~   74 (101)
                      +|..++|||||+.+++.......           +      +...+..+.    .+     +++.+.+.+||++|+..|.
T Consensus         6 iG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~~~f~   85 (213)
T cd04167           6 AGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGHVNFM   85 (213)
T ss_pred             EcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCCcchH
Confidence            58899999999999886433211           0      011122221    11     2456899999999998875


Q ss_pred             e------------EEEEECCChhhHHH
Q psy2967          75 S------------IYMVDAADTDKLEA   89 (101)
Q Consensus        75 ~------------i~v~d~~~~~sf~~   89 (101)
                      .            ++|+|.++..++..
T Consensus        86 ~~~~~~~~~aD~~llVvD~~~~~~~~~  112 (213)
T cd04167          86 DEVAAALRLSDGVVLVVDVVEGVTSNT  112 (213)
T ss_pred             HHHHHHHHhCCEEEEEEECCCCCCHHH
Confidence            4            89999988776643

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>COG2229 Predicted GTPase [General function prediction only]

Probab=98.70  E-value=4.1e-08  Score=62.85  Aligned_cols=82  Identities=17%  Similarity=0.207  Sum_probs=59.7

Q ss_pred             cceeeeEeccCCCcceeeeeccccCcCC--------CCC----CCccceEEEEEecCc-EEEEEEeeCCCCccce-----
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLSGQFS--------QDM----IPTVGFNMRKITKGN-VTIKVWDIGGQPRFRS-----   75 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~~--------~~~----~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~~-----   75 (101)
                      +.+.-...|+.++|||++++++.+....        ..+    ..|+..++..+.... ..+++++++||+||+-     
T Consensus         9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~l   88 (187)
T COG2229           9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEIL   88 (187)
T ss_pred             cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHHHH
Confidence            3444445688899999999999876531        111    245667776655444 8999999999999887     


Q ss_pred             -------EEEEECCChhhHHHHHHHHHH
Q psy2967          76 -------IYMVDAADTDKLEASRNELHA   96 (101)
Q Consensus        76 -------i~v~d~~~~~sf~~~~~~~~~   96 (101)
                             |+++|.+....| ++...++.
T Consensus        89 ~~ga~gaivlVDss~~~~~-~a~~ii~f  115 (187)
T COG2229          89 SRGAVGAIVLVDSSRPITF-HAEEIIDF  115 (187)
T ss_pred             hCCcceEEEEEecCCCcch-HHHHHHHH
Confidence                   889999999998 55444443

>cd01899 Ygr210 Ygr210 subfamily

Probab=98.69  E-value=4e-08  Score=68.26  Aligned_cols=50  Identities=20%  Similarity=0.348  Sum_probs=36.6

Q ss_pred             eccCCCcceeeeeccccCcCC------CCCCCccceEEEE-------------------Eec-CcEEEEEEeeCCC
Q psy2967          21 MRKITKGNVTIWPVPLSGQFS------QDMIPTVGFNMRK-------------------ITK-GNVTIKVWDIGGQ   70 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~------~~~~~t~~~~~~~-------------------~~~-~~~~~~i~D~~G~   70 (101)
                      +|.++||||||++++++.++.      ..+.|++|..+..                   .++ ..+.+++||++|.
T Consensus         4 vG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl   79 (318)
T cd01899           4 VGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL   79 (318)
T ss_pred             ECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence            699999999999999987642      3446777654421                   112 3478999999998

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=98.66  E-value=2.7e-08  Score=66.46  Aligned_cols=67  Identities=15%  Similarity=0.157  Sum_probs=46.4

Q ss_pred             eccCCCcceeeeeccccCcC--------CC-----CC-------CCccceEEEEEecCcEEEEEEeeCCCCccce-----
Q psy2967          21 MRKITKGNVTIWPVPLSGQF--------SQ-----DM-------IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS-----   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~--------~~-----~~-------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----   75 (101)
                      +|..++|||||+.++....-        ..     ++       .-|+......+..++.++.+||++|+..|..     
T Consensus         5 ~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~   84 (237)
T cd04168           5 LAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAEVERS   84 (237)
T ss_pred             EcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHHHHHH
Confidence            58899999999999875210        00     01       1122233344677889999999999987754     


Q ss_pred             -------EEEEECCChhhH
Q psy2967          76 -------IYMVDAADTDKL   87 (101)
Q Consensus        76 -------i~v~d~~~~~sf   87 (101)
                             ++|+|.++....
T Consensus        85 l~~aD~~IlVvd~~~g~~~  103 (237)
T cd04168          85 LSVLDGAILVISAVEGVQA  103 (237)
T ss_pred             HHHhCeEEEEEeCCCCCCH
Confidence                   899999886543

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PRK13351 elongation factor G; Reviewed

Probab=98.66  E-value=3.6e-08  Score=74.39  Aligned_cols=73  Identities=16%  Similarity=0.083  Sum_probs=54.0

Q ss_pred             eccCCCcceeeeeccccCc-------------CCC-------CCCCccceEEEEEecCcEEEEEEeeCCCCccce-----
Q psy2967          21 MRKITKGNVTIWPVPLSGQ-------------FSQ-------DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS-----   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~-------------~~~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----   75 (101)
                      +|..++|||||+.++....             +..       .+..|+......+..++..+.+|||+|+..|..     
T Consensus        14 iG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~   93 (687)
T PRK13351         14 LAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFTGEVERS   93 (687)
T ss_pred             ECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            5999999999999987421             010       234556555556777899999999999987654     


Q ss_pred             -------EEEEECCChhhHHHHHHH
Q psy2967          76 -------IYMVDAADTDKLEASRNE   93 (101)
Q Consensus        76 -------i~v~d~~~~~sf~~~~~~   93 (101)
                             ++|+|.++..+.+....|
T Consensus        94 l~~aD~~ilVvd~~~~~~~~~~~~~  118 (687)
T PRK13351         94 LRVLDGAVVVFDAVTGVQPQTETVW  118 (687)
T ss_pred             HHhCCEEEEEEeCCCCCCHHHHHHH
Confidence                   899999988776655444

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=98.65  E-value=7e-08  Score=68.69  Aligned_cols=79  Identities=19%  Similarity=0.177  Sum_probs=53.0

Q ss_pred             eccCCCcceeeeeccccCcCC-CCC-CCccceEEEEEecC-cEEEEEEeeCCCCccc---------------e----EEE
Q psy2967          21 MRKITKGNVTIWPVPLSGQFS-QDM-IPTVGFNMRKITKG-NVTIKVWDIGGQPRFR---------------S----IYM   78 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~-~~~-~~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~---------------~----i~v   78 (101)
                      ||.||||||||+++++..... ..+ ..|.....-.+... ...+.++|++|.-+-.               .    ++|
T Consensus       165 VG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~V  244 (390)
T PRK12298        165 LGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHL  244 (390)
T ss_pred             EcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEE
Confidence            599999999999999865432 122 23444444444444 3569999999974311               0    889


Q ss_pred             EECC---ChhhHHHHHHHHHHHHH
Q psy2967          79 VDAA---DTDKLEASRNELHALIE   99 (101)
Q Consensus        79 ~d~~---~~~sf~~~~~~~~~i~~   99 (101)
                      +|++   +++.+++...|++++..
T Consensus       245 VD~s~~~~~d~~e~~~~l~~eL~~  268 (390)
T PRK12298        245 IDIAPIDGSDPVENARIIINELEK  268 (390)
T ss_pred             eccCcccccChHHHHHHHHHHHHh
Confidence            9988   56677777777777654

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=98.61  E-value=7.7e-08  Score=68.94  Aligned_cols=67  Identities=16%  Similarity=0.264  Sum_probs=46.4

Q ss_pred             eeeE-eccCCCcceeeeeccccC--cCCC-------------------------------CCCCccceEEEEEecCcEEE
Q psy2967          17 VGFN-MRKITKGNVTIWPVPLSG--QFSQ-------------------------------DMIPTVGFNMRKITKGNVTI   62 (101)
Q Consensus        17 ~g~~-vG~~~vGKtsl~~~~~~~--~~~~-------------------------------~~~~t~~~~~~~~~~~~~~~   62 (101)
                      +.+. +|.+++|||||+.+++..  ....                               ..--|+......++.++..+
T Consensus         7 ~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~~i   86 (425)
T PRK12317          7 LNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKYYF   86 (425)
T ss_pred             EEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCeEE
Confidence            3344 599999999999998732  1100                               11223333344567788999


Q ss_pred             EEEeeCCCCccce------------EEEEECCC
Q psy2967          63 KVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        63 ~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      .+||++|+++|..            ++|+|.++
T Consensus        87 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~  119 (425)
T PRK12317         87 TIVDCPGHRDFVKNMITGASQADAAVLVVAADD  119 (425)
T ss_pred             EEEECCCcccchhhHhhchhcCCEEEEEEEccc
Confidence            9999999987744            89999987

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=98.61  E-value=4.3e-08  Score=61.76  Aligned_cols=66  Identities=18%  Similarity=0.225  Sum_probs=43.1

Q ss_pred             eccCCCcceeeeeccccCcCCC-CC-CCccceEEEEEecCcEEEEEEeeCCCCccce--------------------EEE
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQ-DM-IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS--------------------IYM   78 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~-~~-~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------------------i~v   78 (101)
                      +|.||||||||++++.+....- ++ -.|+......+...+..+.+.|++|--....                    +.|
T Consensus         6 vG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~V   85 (156)
T PF02421_consen    6 VGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVV   85 (156)
T ss_dssp             EESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEE
T ss_pred             ECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEE
Confidence            5999999999999999866332 22 2333344345677789999999999543332                    778


Q ss_pred             EECCChhh
Q psy2967          79 VDAADTDK   86 (101)
Q Consensus        79 ~d~~~~~s   86 (101)
                      .|.++.++
T Consensus        86 vDa~~l~r   93 (156)
T PF02421_consen   86 VDATNLER   93 (156)
T ss_dssp             EEGGGHHH
T ss_pred             CCCCCHHH
Confidence            89887654

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd01850 CDC_Septin CDC/Septin

Probab=98.61  E-value=1.1e-07  Score=64.80  Aligned_cols=72  Identities=14%  Similarity=0.104  Sum_probs=48.4

Q ss_pred             eEeccCCCcceeeeeccccCcCCCC----------CCCccceEEEE--Ee--cCcEEEEEEeeCCCCccceEEEEECCCh
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQD----------MIPTVGFNMRK--IT--KGNVTIKVWDIGGQPRFRSIYMVDAADT   84 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~----------~~~t~~~~~~~--~~--~~~~~~~i~D~~G~~~~~~i~v~d~~~~   84 (101)
                      +.+|.+|+|||||++++.+..+...          ..+|+......  +.  +..+.+.+|||+|-...       ..+.
T Consensus         8 ~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~-------~~~~   80 (276)
T cd01850           8 MVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDN-------INNS   80 (276)
T ss_pred             EEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcccc-------ccch
Confidence            3469999999999999998776543          34555544332  33  33478999999996532       2355


Q ss_pred             hhHHHHHHHHHHH
Q psy2967          85 DKLEASRNELHAL   97 (101)
Q Consensus        85 ~sf~~~~~~~~~i   97 (101)
                      ..++.+..++++-
T Consensus        81 ~~~~~i~~yi~~q   93 (276)
T cd01850          81 DCWKPIVDYIDDQ   93 (276)
T ss_pred             hhHHHHHHHHHHH
Confidence            6677776665543

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=98.60  E-value=6e-08  Score=69.60  Aligned_cols=71  Identities=15%  Similarity=0.294  Sum_probs=54.1

Q ss_pred             cceeeeE---eccCCCcceeeeeccccCc--CCCCCCCccceEEE-EEecCcEEEEEEeeCCCCccce------------
Q psy2967          14 IPTVGFN---MRKITKGNVTIWPVPLSGQ--FSQDMIPTVGFNMR-KITKGNVTIKVWDIGGQPRFRS------------   75 (101)
Q Consensus        14 ~~~~g~~---vG~~~vGKtsl~~~~~~~~--~~~~~~~t~~~~~~-~~~~~~~~~~i~D~~G~~~~~~------------   75 (101)
                      +.--|+.   +|.||||||||+|.+.+.+  .+++..-|.+.-.+ .++.+++.+.+.||+|-.....            
T Consensus       213 ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~  292 (454)
T COG0486         213 ILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKK  292 (454)
T ss_pred             hhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHH
Confidence            3344444   3999999999999999754  45566666665554 4788999999999999875444            


Q ss_pred             --------EEEEECCCh
Q psy2967          76 --------IYMVDAADT   84 (101)
Q Consensus        76 --------i~v~d~~~~   84 (101)
                              ++|+|.+.+
T Consensus       293 ~i~~ADlvL~v~D~~~~  309 (454)
T COG0486         293 AIEEADLVLFVLDASQP  309 (454)
T ss_pred             HHHhCCEEEEEEeCCCC
Confidence                    889999885

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=98.59  E-value=1.3e-07  Score=72.23  Aligned_cols=64  Identities=14%  Similarity=0.269  Sum_probs=46.0

Q ss_pred             eccCCCcceeeeeccccCcCCCCCCCccceEEE----EEecCcEEEEEEeeCCCCccc--------------------e-
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFR--------------------S-   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~D~~G~~~~~--------------------~-   75 (101)
                      +|.+|||||||++++.+....  ..+..|...+    .+..++..+.+||++|...+.                    . 
T Consensus         9 vG~pNvGKSTLfN~Ltg~~~~--vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~a   86 (772)
T PRK09554          9 IGNPNSGKTTLFNQLTGARQR--VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDA   86 (772)
T ss_pred             ECCCCCCHHHHHHHHhCCCCc--cCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCC
Confidence            599999999999999875432  2233343332    356778899999999986542                    1 


Q ss_pred             ---EEEEECCChhh
Q psy2967          76 ---IYMVDAADTDK   86 (101)
Q Consensus        76 ---i~v~d~~~~~s   86 (101)
                         ++|+|.++.++
T Consensus        87 D~vI~VvDat~ler  100 (772)
T PRK09554         87 DLLINVVDASNLER  100 (772)
T ss_pred             CEEEEEecCCcchh
Confidence               78899988655

>PRK10218 GTP-binding protein; Provisional

Probab=98.57  E-value=1.5e-07  Score=70.25  Aligned_cols=65  Identities=23%  Similarity=0.366  Sum_probs=49.0

Q ss_pred             eccCCCcceeeeecccc--CcCCCCC------------CCccceEEE----EEecCcEEEEEEeeCCCCccce-------
Q psy2967          21 MRKITKGNVTIWPVPLS--GQFSQDM------------IPTVGFNMR----KITKGNVTIKVWDIGGQPRFRS-------   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~--~~~~~~~------------~~t~~~~~~----~~~~~~~~~~i~D~~G~~~~~~-------   75 (101)
                      +|..++|||||+.++..  +.+...+            +.+.|..+.    .+.++++.+.+||++|+..|..       
T Consensus        11 iGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v~~~l~   90 (607)
T PRK10218         11 IAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMS   90 (607)
T ss_pred             ECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHHHHHHH
Confidence            59999999999999986  5444322            234454442    3667889999999999998865       


Q ss_pred             -----EEEEECCChh
Q psy2967          76 -----IYMVDAADTD   85 (101)
Q Consensus        76 -----i~v~d~~~~~   85 (101)
                           |+|+|.++..
T Consensus        91 ~aDg~ILVVDa~~G~  105 (607)
T PRK10218         91 MVDSVLLVVDAFDGP  105 (607)
T ss_pred             hCCEEEEEEecccCc
Confidence                 8999998753

>PRK00093 GTP-binding protein Der; Reviewed

Probab=98.56  E-value=2.6e-07  Score=66.18  Aligned_cols=71  Identities=13%  Similarity=0.146  Sum_probs=47.6

Q ss_pred             EeccCCCcceeeeeccccCcC--CCCCCCccceEE-EEEecCcEEEEEEeeCCCCccc----------------e-----
Q psy2967          20 NMRKITKGNVTIWPVPLSGQF--SQDMIPTVGFNM-RKITKGNVTIKVWDIGGQPRFR----------------S-----   75 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~--~~~~~~t~~~~~-~~~~~~~~~~~i~D~~G~~~~~----------------~-----   75 (101)
                      .+|.+|+|||||++++.+.+.  ......|..... ..+..++..+.+|||+|..+..                .     
T Consensus       178 ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad  257 (435)
T PRK00093        178 IIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERAD  257 (435)
T ss_pred             EECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCC
Confidence            469999999999999997542  222222322222 2345567788999999963211                0     


Q ss_pred             --EEEEECCChhhHHHH
Q psy2967          76 --IYMVDAADTDKLEAS   90 (101)
Q Consensus        76 --i~v~d~~~~~sf~~~   90 (101)
                        |+|+|.++..+.+..
T Consensus       258 ~~ilViD~~~~~~~~~~  274 (435)
T PRK00093        258 VVLLVIDATEGITEQDL  274 (435)
T ss_pred             EEEEEEeCCCCCCHHHH
Confidence              899999988776655

>cd04169 RF3 RF3 subfamily

Probab=98.56  E-value=5.7e-08  Score=65.96  Aligned_cols=65  Identities=18%  Similarity=0.204  Sum_probs=44.9

Q ss_pred             eccCCCcceeeeeccccC--cCCC---------------CC-------CCccceEEEEEecCcEEEEEEeeCCCCccce-
Q psy2967          21 MRKITKGNVTIWPVPLSG--QFSQ---------------DM-------IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS-   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~--~~~~---------------~~-------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-   75 (101)
                      +|.+++|||||+.++...  ....               ++       ..++......+..++.++.+|||+|+.+|.. 
T Consensus         8 vGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~df~~~   87 (267)
T cd04169           8 ISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHEDFSED   87 (267)
T ss_pred             EcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchHHHHH
Confidence            588999999999998742  1110               00       1122223335778899999999999987654 


Q ss_pred             -----------EEEEECCChh
Q psy2967          76 -----------IYMVDAADTD   85 (101)
Q Consensus        76 -----------i~v~d~~~~~   85 (101)
                                 |+|+|.++..
T Consensus        88 ~~~~l~~aD~~IlVvda~~g~  108 (267)
T cd04169          88 TYRTLTAVDSAVMVIDAAKGV  108 (267)
T ss_pred             HHHHHHHCCEEEEEEECCCCc
Confidence                       8999998753

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=98.55  E-value=1.7e-08  Score=63.40  Aligned_cols=60  Identities=15%  Similarity=0.168  Sum_probs=38.9

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCC-----ccc-------e----EEEEECCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQP-----RFR-------S----IYMVDAAD   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~-----~~~-------~----i~v~d~~~   83 (101)
                      .+|.++||||||++++.+.. . ...+|.+..+   ...    .+||++|+.     .++       .    ++|+|.++
T Consensus         6 ~iG~~~~GKstl~~~l~~~~-~-~~~~~~~v~~---~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~   76 (158)
T PRK15467          6 FVGAVGAGKTTLFNALQGNY-T-LARKTQAVEF---NDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGAND   76 (158)
T ss_pred             EECCCCCCHHHHHHHHcCCC-c-cCccceEEEE---CCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCC
Confidence            36889999999999977543 2 1233433333   112    269999972     211       1    88999998


Q ss_pred             hhhHH
Q psy2967          84 TDKLE   88 (101)
Q Consensus        84 ~~sf~   88 (101)
                      .+++.
T Consensus        77 ~~s~~   81 (158)
T PRK15467         77 PESRL   81 (158)
T ss_pred             ccccc
Confidence            87763

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=98.53  E-value=6.4e-08  Score=69.39  Aligned_cols=67  Identities=16%  Similarity=0.221  Sum_probs=47.1

Q ss_pred             eccCCCcceeeeecccc--CcCCC-------------------------------CCCCccceEEEEEecCcEEEEEEee
Q psy2967          21 MRKITKGNVTIWPVPLS--GQFSQ-------------------------------DMIPTVGFNMRKITKGNVTIKVWDI   67 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~--~~~~~-------------------------------~~~~t~~~~~~~~~~~~~~~~i~D~   67 (101)
                      +|..++|||||+.+++.  +....                               ....|+......+..++..+.+||+
T Consensus        13 ~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~~i~iiDt   92 (426)
T TIGR00483        13 IGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKYEVTIVDC   92 (426)
T ss_pred             EeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCeEEEEEEC
Confidence            49999999999999875  22211                               0112223333446677899999999


Q ss_pred             CCCCccce------------EEEEECCChhhH
Q psy2967          68 GGQPRFRS------------IYMVDAADTDKL   87 (101)
Q Consensus        68 ~G~~~~~~------------i~v~d~~~~~sf   87 (101)
                      +|+++|..            ++|+|.++.+++
T Consensus        93 pGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~  124 (426)
T TIGR00483        93 PGHRDFIKNMITGASQADAAVLVVAVGDGEFE  124 (426)
T ss_pred             CCHHHHHHHHHhhhhhCCEEEEEEECCCCCcc
Confidence            99987754            999999987543

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=98.51  E-value=1.2e-07  Score=64.11  Aligned_cols=70  Identities=14%  Similarity=0.131  Sum_probs=46.9

Q ss_pred             eccCCCcceeeeeccccCcCCCC--------------------CCCccceEEEEEecCcEEEEEEeeCCCCccce-----
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQD--------------------MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS-----   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~~--------------------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----   75 (101)
                      +|.+|+|||||++++........                    ...|+......+..++..+.+||++|+..+..     
T Consensus         5 vG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~   84 (268)
T cd04170           5 VGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGETRAA   84 (268)
T ss_pred             ECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHHHHHH
Confidence            58999999999999864221100                    12223333344667789999999999976543     


Q ss_pred             -------EEEEECCChhhHHHH
Q psy2967          76 -------IYMVDAADTDKLEAS   90 (101)
Q Consensus        76 -------i~v~d~~~~~sf~~~   90 (101)
                             ++|+|.++.......
T Consensus        85 l~~aD~~i~Vvd~~~g~~~~~~  106 (268)
T cd04170          85 LRAADAALVVVSAQSGVEVGTE  106 (268)
T ss_pred             HHHCCEEEEEEeCCCCCCHHHH
Confidence                   889999876554433

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>KOG1707|consensus

Probab=98.50  E-value=1e-07  Score=69.98  Aligned_cols=86  Identities=12%  Similarity=0.061  Sum_probs=62.9

Q ss_pred             cceeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEE--EEecCcEEEEEEeeCCCCccce------------EEEE
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KITKGNVTIKVWDIGGQPRFRS------------IYMV   79 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~D~~G~~~~~~------------i~v~   79 (101)
                      -.+.-+.+|+.|||||||+..+...+|+++.++....-..  .+.-.++...|.|++..+.-+.            .++|
T Consensus         8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvy   87 (625)
T KOG1707|consen    8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVY   87 (625)
T ss_pred             cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEEEE
Confidence            3455556799999999999999999999776654432211  2344567789999974433222            7789


Q ss_pred             ECCChhhHHHHH-HHHHHHHH
Q psy2967          80 DAADTDKLEASR-NELHALIE   99 (101)
Q Consensus        80 d~~~~~sf~~~~-~~~~~i~~   99 (101)
                      +++++.+.+.+. .|+..+.+
T Consensus        88 avd~~~T~D~ist~WLPlir~  108 (625)
T KOG1707|consen   88 AVDDESTVDRISTKWLPLIRQ  108 (625)
T ss_pred             ecCChHHhhhhhhhhhhhhhc
Confidence            999999999994 69988765

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=98.50  E-value=3.2e-07  Score=66.70  Aligned_cols=79  Identities=15%  Similarity=0.271  Sum_probs=56.5

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEe------cCcEEEEEEeeCCCCccce----------------E
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKIT------KGNVTIKVWDIGGQPRFRS----------------I   76 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~------~~~~~~~i~D~~G~~~~~~----------------i   76 (101)
                      +.+|+.++|||+|+.+|.+.+   .+.++.+..|..++      .....+.+|-..|...+..                |
T Consensus        29 lvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~vv  105 (472)
T PF05783_consen   29 LVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNTLVV  105 (472)
T ss_pred             EEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccceEEE
Confidence            446899999999999987543   45677776664422      1235789998887654443                8


Q ss_pred             EEEECCChhh-HHHHHHHHHHHHHh
Q psy2967          77 YMVDAADTDK-LEASRNELHALIEK  100 (101)
Q Consensus        77 ~v~d~~~~~s-f~~~~~~~~~i~~~  100 (101)
                      +|.|++.+.. ++.+..|+.-+.++
T Consensus       106 IvlDlS~PW~~~esL~~W~~vl~~~  130 (472)
T PF05783_consen  106 IVLDLSKPWNIMESLEKWLSVLREH  130 (472)
T ss_pred             EEecCCChHHHHHHHHHHHHHHHHH
Confidence            8999999987 45778888766554

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>KOG0090|consensus

Probab=98.49  E-value=6.8e-07  Score=58.78  Aligned_cols=81  Identities=17%  Similarity=0.362  Sum_probs=54.2

Q ss_pred             ccceeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce---------------EE
Q psy2967          13 MIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS---------------IY   77 (101)
Q Consensus        13 ~~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------------i~   77 (101)
                      .+..+|+    .++|||+|..++..+... .+.+++..+.-....++-...+.|.+|+++.|.               ||
T Consensus        40 ~Vll~Gl----~dSGKT~LF~qL~~gs~~-~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF  114 (238)
T KOG0090|consen   40 AVLLVGL----SDSGKTSLFTQLITGSHR-GTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF  114 (238)
T ss_pred             cEEEEec----CCCCceeeeeehhcCCcc-CeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence            4445555    599999999999998655 344444555444444555589999999998766               88


Q ss_pred             EEECC-ChhhHHHHHHHHHHHH
Q psy2967          78 MVDAA-DTDKLEASRNELHALI   98 (101)
Q Consensus        78 v~d~~-~~~sf~~~~~~~~~i~   98 (101)
                      |+|.. .......+.+.+-+++
T Consensus       115 VVDSa~f~k~vrdvaefLydil  136 (238)
T KOG0090|consen  115 VVDSATFLKNVRDVAEFLYDIL  136 (238)
T ss_pred             EEeccccchhhHHHHHHHHHHH
Confidence            88865 3334455555555544

>PRK05433 GTP-binding protein LepA; Provisional

Probab=98.49  E-value=1.8e-07  Score=69.75  Aligned_cols=74  Identities=15%  Similarity=0.246  Sum_probs=49.1

Q ss_pred             eccCCCcceeeeeccccC--cC-----CCCC------CCccceEEE----EE-----ecCcEEEEEEeeCCCCccce---
Q psy2967          21 MRKITKGNVTIWPVPLSG--QF-----SQDM------IPTVGFNMR----KI-----TKGNVTIKVWDIGGQPRFRS---   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~--~~-----~~~~------~~t~~~~~~----~~-----~~~~~~~~i~D~~G~~~~~~---   75 (101)
                      +|..++|||||+.++...  .+     ...+      +.+.|..+.    .+     +++.+.+.+|||+|+..|..   
T Consensus        13 iGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF~~~v~   92 (600)
T PRK05433         13 IAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDFSYEVS   92 (600)
T ss_pred             ECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHHHHHHH
Confidence            599999999999999752  11     1111      112232221    12     34578999999999998864   


Q ss_pred             ---------EEEEECCChhhHHHHHHHH
Q psy2967          76 ---------IYMVDAADTDKLEASRNEL   94 (101)
Q Consensus        76 ---------i~v~d~~~~~sf~~~~~~~   94 (101)
                               |+|+|.++....+....|.
T Consensus        93 ~sl~~aD~aILVVDas~gv~~qt~~~~~  120 (600)
T PRK05433         93 RSLAACEGALLVVDASQGVEAQTLANVY  120 (600)
T ss_pred             HHHHHCCEEEEEEECCCCCCHHHHHHHH
Confidence                     9999999876555554443

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=98.46  E-value=2.3e-07  Score=60.14  Aligned_cols=52  Identities=10%  Similarity=0.132  Sum_probs=33.5

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccce-EEE----EEe-cCcEEEEEEeeCCCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGF-NMR----KIT-KGNVTIKVWDIGGQP   71 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~-~~~----~~~-~~~~~~~i~D~~G~~   71 (101)
                      .+|++|||||||++.+.+..+.....++.+. ...    .+. .....+.+||++|..
T Consensus         6 i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~   63 (197)
T cd04104           6 VTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIG   63 (197)
T ss_pred             EECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCC
Confidence            4699999999999999986654433333331 110    111 112468999999974

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=98.45  E-value=8.9e-07  Score=57.21  Aligned_cols=52  Identities=13%  Similarity=0.014  Sum_probs=36.9

Q ss_pred             eccCCCcceeeeeccccCcCCCCC----CCccceEEEEEecCcEEEEEEeeCCCCc
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQDM----IPTVGFNMRKITKGNVTIKVWDIGGQPR   72 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~G~~~   72 (101)
                      +|.+|||||||++.+++.+.....    ..|...........+..+.+.||+|-..
T Consensus         6 vG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d   61 (196)
T cd01852           6 VGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFD   61 (196)
T ss_pred             ECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCC
Confidence            699999999999999976543211    2344444444455778899999999654

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=98.45  E-value=1.7e-07  Score=61.20  Aligned_cols=64  Identities=17%  Similarity=0.215  Sum_probs=42.2

Q ss_pred             eccCCCcceeeeeccccCc--CCC-------------------------------CCCCccceEEEEEecCcEEEEEEee
Q psy2967          21 MRKITKGNVTIWPVPLSGQ--FSQ-------------------------------DMIPTVGFNMRKITKGNVTIKVWDI   67 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~--~~~-------------------------------~~~~t~~~~~~~~~~~~~~~~i~D~   67 (101)
                      +|.+++|||||+.++....  ...                               +..-|+......+..++..+.+|||
T Consensus         5 iG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~liDT   84 (208)
T cd04166           5 CGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFIIADT   84 (208)
T ss_pred             EECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEEEEEC
Confidence            5889999999999986421  110                               0011111222234567788999999


Q ss_pred             CCCCccce------------EEEEECCCh
Q psy2967          68 GGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        68 ~G~~~~~~------------i~v~d~~~~   84 (101)
                      +|+++|..            ++|+|.++.
T Consensus        85 pG~~~~~~~~~~~~~~ad~~llVvD~~~~  113 (208)
T cd04166          85 PGHEQYTRNMVTGASTADLAILLVDARKG  113 (208)
T ss_pred             CcHHHHHHHHHHhhhhCCEEEEEEECCCC
Confidence            99987643            889998865

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=98.40  E-value=4.9e-07  Score=67.42  Aligned_cols=76  Identities=21%  Similarity=0.307  Sum_probs=50.4

Q ss_pred             eccCCCcceeeeecccc--CcCCCCC----------------CCccceEEEEEecCcEEEEEEeeCCCCccce-------
Q psy2967          21 MRKITKGNVTIWPVPLS--GQFSQDM----------------IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS-------   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~--~~~~~~~----------------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------   75 (101)
                      +|..++|||||+.++..  +.+....                ..|+......+.++++++.+|||+|+..|..       
T Consensus         7 iGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~~~l~   86 (594)
T TIGR01394         7 IAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVERVLG   86 (594)
T ss_pred             EcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHHHHHH
Confidence            48889999999999885  4443221                1222222234678899999999999988764       


Q ss_pred             -----EEEEECCChhhHHHHHHHHHHH
Q psy2967          76 -----IYMVDAADTDKLEASRNELHAL   97 (101)
Q Consensus        76 -----i~v~d~~~~~sf~~~~~~~~~i   97 (101)
                           ++|+|.++.. ....+.|+..+
T Consensus        87 ~aD~alLVVDa~~G~-~~qT~~~l~~a  112 (594)
T TIGR01394        87 MVDGVLLLVDASEGP-MPQTRFVLKKA  112 (594)
T ss_pred             hCCEEEEEEeCCCCC-cHHHHHHHHHH
Confidence                 8899987632 23334444443

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>COG1084 Predicted GTPase [General function prediction only]

Probab=98.37  E-value=1.5e-06  Score=60.29  Aligned_cols=86  Identities=19%  Similarity=0.246  Sum_probs=59.4

Q ss_pred             cceeeeEeccCCCcceeeeeccccCcCC-CCC-CCccceEEEEEecCcEEEEEEeeCCCCccc--e--------------
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLSGQFS-QDM-IPTVGFNMRKITKGNVTIKVWDIGGQPRFR--S--------------   75 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~~-~~~-~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~--~--------------   75 (101)
                      .|++- ..|.||||||||++.+..-+.. ..| -.|-++++-.+..+...+++.||+|-=.-+  .              
T Consensus       168 ~pTiv-VaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~h  246 (346)
T COG1084         168 LPTIV-VAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRH  246 (346)
T ss_pred             CCeEE-EecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHH
Confidence            45544 3499999999999999975432 233 356678887888899999999999952111  1              


Q ss_pred             -----EEEEECCChh--hHHHHHHHHHHHHHh
Q psy2967          76 -----IYMVDAADTD--KLEASRNELHALIEK  100 (101)
Q Consensus        76 -----i~v~d~~~~~--sf~~~~~~~~~i~~~  100 (101)
                           +|+||.+...  +.+.-...+.++...
T Consensus       247 l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~  278 (346)
T COG1084         247 LAGVILFLFDPSETCGYSLEEQISLLEEIKEL  278 (346)
T ss_pred             hcCeEEEEEcCccccCCCHHHHHHHHHHHHHh
Confidence                 8889987643  445545556665543

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=98.37  E-value=1.6e-06  Score=58.40  Aligned_cols=59  Identities=10%  Similarity=0.009  Sum_probs=39.5

Q ss_pred             ceeeeEeccCCCcceeeeeccccCcCCC--CC-CCccceEEEEEecCcEEEEEEeeCCCCcc
Q psy2967          15 PTVGFNMRKITKGNVTIWPVPLSGQFSQ--DM-IPTVGFNMRKITKGNVTIKVWDIGGQPRF   73 (101)
Q Consensus        15 ~~~g~~vG~~~vGKtsl~~~~~~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~D~~G~~~~   73 (101)
                      +..-+.+|.+|||||||++.+.+.....  .. ..|...........+..+.+|||+|-...
T Consensus        31 ~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~   92 (249)
T cd01853          31 SLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLES   92 (249)
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcc
Confidence            3344457999999999999999865422  12 23333333344556788999999997644

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=98.31  E-value=6.3e-07  Score=67.09  Aligned_cols=70  Identities=14%  Similarity=0.240  Sum_probs=48.1

Q ss_pred             eccCCCcceeeeecccc---CcCCCC--CCCccceEEEEEec-CcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          21 MRKITKGNVTIWPVPLS---GQFSQD--MIPTVGFNMRKITK-GNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~---~~~~~~--~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +|..++|||||++++.+   ..+.++  ...|+...+..+.. ++..+.+||++|+++|-.            ++|+|..
T Consensus         6 ~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~   85 (614)
T PRK10512          6 AGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACD   85 (614)
T ss_pred             ECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECC
Confidence            59999999999999985   223333  24555544444322 345689999999998854            8899987


Q ss_pred             C---hhhHHHH
Q psy2967          83 D---TDKLEAS   90 (101)
Q Consensus        83 ~---~~sf~~~   90 (101)
                      +   +++.+.+
T Consensus        86 eg~~~qT~ehl   96 (614)
T PRK10512         86 DGVMAQTREHL   96 (614)
T ss_pred             CCCcHHHHHHH
Confidence            6   4555544

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=98.29  E-value=4.9e-07  Score=58.86  Aligned_cols=24  Identities=13%  Similarity=0.278  Sum_probs=20.7

Q ss_pred             EEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          60 VTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        60 ~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      ..+.+||++|++++..            ++|+|.++
T Consensus        83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~  118 (203)
T cd01888          83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANE  118 (203)
T ss_pred             cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCC
Confidence            6789999999987755            89999986

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=98.28  E-value=2.8e-06  Score=58.87  Aligned_cols=54  Identities=15%  Similarity=0.112  Sum_probs=35.5

Q ss_pred             eEeccCCCcceeeeeccccCcCC--CCCCC-ccceEEEEEecCcEEEEEEeeCCCCc
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFS--QDMIP-TVGFNMRKITKGNVTIKVWDIGGQPR   72 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~--~~~~~-t~~~~~~~~~~~~~~~~i~D~~G~~~   72 (101)
                      +.+|.+||||||++|++.+.+..  ....+ +...........+..+.++||+|...
T Consensus        42 llvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d   98 (313)
T TIGR00991        42 LVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIE   98 (313)
T ss_pred             EEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCc
Confidence            34699999999999999976532  12221 12222222334678999999999764

>cd01859 MJ1464 MJ1464

Probab=98.28  E-value=5.2e-07  Score=56.20  Aligned_cols=50  Identities=18%  Similarity=0.165  Sum_probs=35.8

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE-EecCcEEEEEEeeCC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK-ITKGNVTIKVWDIGG   69 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~i~D~~G   69 (101)
                      +.+|.+++|||||++++.... ...+.++.|..... ....+..+.+|||+|
T Consensus       105 ~~ig~~~~Gkssl~~~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~DtpG  155 (156)
T cd01859         105 GVVGYPNVGKSSIINALKGRH-SASTSPSPGYTKGEQLVKITSKIYLLDTPG  155 (156)
T ss_pred             EEECCCCCCHHHHHHHHhCCC-ccccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence            567999999999999999654 44566777765422 212233799999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=98.27  E-value=8.7e-07  Score=58.76  Aligned_cols=69  Identities=19%  Similarity=0.219  Sum_probs=44.5

Q ss_pred             eccCCCcceeeeeccccCc--CCCC----------------CCCccceEEEE--Ee--------cCcEEEEEEeeCCCCc
Q psy2967          21 MRKITKGNVTIWPVPLSGQ--FSQD----------------MIPTVGFNMRK--IT--------KGNVTIKVWDIGGQPR   72 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~--~~~~----------------~~~t~~~~~~~--~~--------~~~~~~~i~D~~G~~~   72 (101)
                      +|..++|||||+.+++...  ....                ..-|+......  ..        ++++.+.+|||+|++.
T Consensus         6 iGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTPG~~~   85 (222)
T cd01885           6 IAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSPGHVD   85 (222)
T ss_pred             ECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCCCccc
Confidence            5888999999999987421  1100                00111111111  12        3378999999999998


Q ss_pred             cce------------EEEEECCChhhHHH
Q psy2967          73 FRS------------IYMVDAADTDKLEA   89 (101)
Q Consensus        73 ~~~------------i~v~d~~~~~sf~~   89 (101)
                      |..            ++|+|+++..+.+.
T Consensus        86 f~~~~~~~l~~aD~~ilVvD~~~g~~~~t  114 (222)
T cd01885          86 FSSEVTAALRLCDGALVVVDAVEGVCVQT  114 (222)
T ss_pred             cHHHHHHHHHhcCeeEEEEECCCCCCHHH
Confidence            865            99999998766554

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.24  E-value=5.8e-07  Score=55.32  Aligned_cols=49  Identities=16%  Similarity=0.115  Sum_probs=31.7

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccc--eEEEEEecCcEEEEEEeeCCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVG--FNMRKITKGNVTIKVWDIGGQ   70 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~i~D~~G~   70 (101)
                      .+|.+|||||||++++...+... ...+.|  .....+...+ .+.+|||+|-
T Consensus        88 ~~G~~~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~i~DtpG~  138 (141)
T cd01857          88 LVGYPNVGKSSLINALVGKKKVS-VSATPGKTKHFQTIFLTP-TITLCDCPGL  138 (141)
T ss_pred             EECCCCCCHHHHHHHHhCCCcee-eCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence            35999999999999999876542 222222  2222222222 5799999994

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK09602 translation-associated GTPase; Reviewed

Probab=98.20  E-value=5.6e-06  Score=59.20  Aligned_cols=50  Identities=18%  Similarity=0.314  Sum_probs=34.3

Q ss_pred             eccCCCcceeeeeccccCcCCC-CC-----CCccceEEEE-------------------Ee-cCcEEEEEEeeCCC
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQ-DM-----IPTVGFNMRK-------------------IT-KGNVTIKVWDIGGQ   70 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~-~~-----~~t~~~~~~~-------------------~~-~~~~~~~i~D~~G~   70 (101)
                      ||.|+||||||+++++..++.. +|     .|++|.....                   .+ ...+.+++||++|.
T Consensus         7 vG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aGl   82 (396)
T PRK09602          7 VGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAGL   82 (396)
T ss_pred             ECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCCc
Confidence            6999999999999999876542 23     3555543310                   01 12377999999994

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=98.17  E-value=3.4e-06  Score=54.12  Aligned_cols=64  Identities=22%  Similarity=0.303  Sum_probs=46.5

Q ss_pred             eccCCCcceeeeeccccCcCC--C------------------CCCCccceEEEEEe--cCcEEEEEEeeCCCCccce---
Q psy2967          21 MRKITKGNVTIWPVPLSGQFS--Q------------------DMIPTVGFNMRKIT--KGNVTIKVWDIGGQPRFRS---   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~--~------------------~~~~t~~~~~~~~~--~~~~~~~i~D~~G~~~~~~---   75 (101)
                      +|..++|||||+.++....-.  .                  ...-|+........  .....+.+.|++|+..|..   
T Consensus         9 ~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~   88 (188)
T PF00009_consen    9 IGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHEDFIKEMI   88 (188)
T ss_dssp             EESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHHHHHHHH
T ss_pred             ECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccceeeccc
Confidence            599999999999998853211  0                  12233444445555  7889999999999987755   


Q ss_pred             ---------EEEEECCCh
Q psy2967          76 ---------IYMVDAADT   84 (101)
Q Consensus        76 ---------i~v~d~~~~   84 (101)
                               |+|+|..+.
T Consensus        89 ~~~~~~D~ailvVda~~g  106 (188)
T PF00009_consen   89 RGLRQADIAILVVDANDG  106 (188)
T ss_dssp             HHHTTSSEEEEEEETTTB
T ss_pred             ceecccccceeeeecccc
Confidence                     889998754

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=98.16  E-value=2.6e-06  Score=62.87  Aligned_cols=65  Identities=20%  Similarity=0.252  Sum_probs=43.7

Q ss_pred             eccCCCcceeeeecccc--CcCC---------------CCC-------CCccceEEEEEecCcEEEEEEeeCCCCccce-
Q psy2967          21 MRKITKGNVTIWPVPLS--GQFS---------------QDM-------IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS-   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~--~~~~---------------~~~-------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-   75 (101)
                      +|.+++|||||+.++..  +...               .++       ..|+......+..+++.+.+|||+|+..|.. 
T Consensus        16 iGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~~df~~~   95 (526)
T PRK00741         16 ISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHEDFSED   95 (526)
T ss_pred             ECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCchhhHHH
Confidence            58899999999999863  1110               000       0111122234677889999999999987654 


Q ss_pred             -----------EEEEECCChh
Q psy2967          76 -----------IYMVDAADTD   85 (101)
Q Consensus        76 -----------i~v~d~~~~~   85 (101)
                                 |+|+|.++..
T Consensus        96 ~~~~l~~aD~aIlVvDa~~gv  116 (526)
T PRK00741         96 TYRTLTAVDSALMVIDAAKGV  116 (526)
T ss_pred             HHHHHHHCCEEEEEEecCCCC
Confidence                       8999998753

>COG3596 Predicted GTPase [General function prediction only]

Probab=98.16  E-value=9.4e-07  Score=60.11  Aligned_cols=60  Identities=15%  Similarity=0.256  Sum_probs=39.9

Q ss_pred             ccceeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEE---EEecCcEEEEEEeeCCCCc
Q psy2967          13 MIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPR   72 (101)
Q Consensus        13 ~~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~   72 (101)
                      .-|+.++.+|..|||||||+|.+..+...+-..--.+.+..   ......-.+.+||++|-+.
T Consensus        37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gd   99 (296)
T COG3596          37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGD   99 (296)
T ss_pred             cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCccc
Confidence            36888888999999999999999976544321111121111   1234446789999999765

>COG1159 Era GTPase [General function prediction only]

Probab=98.15  E-value=2.3e-06  Score=58.69  Aligned_cols=63  Identities=21%  Similarity=0.284  Sum_probs=45.6

Q ss_pred             eccCCCcceeeeeccccCcCC--CCCCCccceEEEE-EecCcEEEEEEeeCCCCccce--------------------EE
Q psy2967          21 MRKITKGNVTIWPVPLSGQFS--QDMIPTVGFNMRK-ITKGNVTIKVWDIGGQPRFRS--------------------IY   77 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~--~~~~~t~~~~~~~-~~~~~~~~~i~D~~G~~~~~~--------------------i~   77 (101)
                      +|.||||||||+|++++.+..  ..-..|.+-.+.. +..++..+.+.||+|-.+-+.                    +|
T Consensus        12 iGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilf   91 (298)
T COG1159          12 IGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILF   91 (298)
T ss_pred             EcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEE
Confidence            599999999999999986542  2333444444443 456788999999999754433                    78


Q ss_pred             EEECCC
Q psy2967          78 MVDAAD   83 (101)
Q Consensus        78 v~d~~~   83 (101)
                      |.|.++
T Consensus        92 vvd~~~   97 (298)
T COG1159          92 VVDADE   97 (298)
T ss_pred             EEeccc
Confidence            888876

>TIGR00485 EF-Tu translation elongation factor TU

Probab=98.14  E-value=3.3e-06  Score=60.17  Aligned_cols=63  Identities=16%  Similarity=0.133  Sum_probs=42.4

Q ss_pred             eccCCCcceeeeeccccC-----c--CC---------C--CCCCccceEEEEEecCcEEEEEEeeCCCCccce-------
Q psy2967          21 MRKITKGNVTIWPVPLSG-----Q--FS---------Q--DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS-------   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~-----~--~~---------~--~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------   75 (101)
                      +|-.++|||||+.++...     +  +.         +  +..-|+......+..++..+.+||++|+++|..       
T Consensus        18 ~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~~~~~~~~~   97 (394)
T TIGR00485        18 IGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAA   97 (394)
T ss_pred             EeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHHHHHHHHHh
Confidence            488899999999998732     0  00         0  111222232233556678899999999998755       


Q ss_pred             -----EEEEECCC
Q psy2967          76 -----IYMVDAAD   83 (101)
Q Consensus        76 -----i~v~d~~~   83 (101)
                           ++|+|..+
T Consensus        98 ~~D~~ilVvda~~  110 (394)
T TIGR00485        98 QMDGAILVVSATD  110 (394)
T ss_pred             hCCEEEEEEECCC
Confidence                 88899876

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>KOG3886|consensus

Probab=98.10  E-value=1.9e-06  Score=57.59  Aligned_cols=66  Identities=21%  Similarity=0.467  Sum_probs=44.0

Q ss_pred             EeccCCCcceeeeeccccCc--CC-CCCCCccceEEEEEec-CcEEEEEEeeCCCCccce-----------------EEE
Q psy2967          20 NMRKITKGNVTIWPVPLSGQ--FS-QDMIPTVGFNMRKITK-GNVTIKVWDIGGQPRFRS-----------------IYM   78 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~--~~-~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~-----------------i~v   78 (101)
                      -+|..|+||||+--.+..+-  +. ....+|+.+..-.+.. +++.+.+||.+||+.+-.                 +++
T Consensus         9 LMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~v   88 (295)
T KOG3886|consen    9 LMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYV   88 (295)
T ss_pred             EeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeheeeeee
Confidence            35888999999976655332  11 1233455554434443 458899999999985433                 889


Q ss_pred             EECCChh
Q psy2967          79 VDAADTD   85 (101)
Q Consensus        79 ~d~~~~~   85 (101)
                      ||+..++
T Consensus        89 FDves~e   95 (295)
T KOG3886|consen   89 FDVESRE   95 (295)
T ss_pred             eeccchh
Confidence            9998874

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=98.09  E-value=3e-06  Score=64.53  Aligned_cols=63  Identities=22%  Similarity=0.271  Sum_probs=45.2

Q ss_pred             eccCCCcceeeeeccccC---------------cCCCC---CCCccceEEE----EEecCcEEEEEEeeCCCCccce---
Q psy2967          21 MRKITKGNVTIWPVPLSG---------------QFSQD---MIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRS---   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~---------------~~~~~---~~~t~~~~~~----~~~~~~~~~~i~D~~G~~~~~~---   75 (101)
                      +|..++|||||+.+++..               ++.+.   ...|+.....    .++++++.+.+|||+|+..|..   
T Consensus        25 vGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~  104 (720)
T TIGR00490        25 VAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVDFGGDVT  104 (720)
T ss_pred             EEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccccHHHHH
Confidence            599999999999998642               22211   2335543322    2567789999999999988754   


Q ss_pred             ---------EEEEECCC
Q psy2967          76 ---------IYMVDAAD   83 (101)
Q Consensus        76 ---------i~v~d~~~   83 (101)
                               |+|+|..+
T Consensus       105 ~al~~aD~~llVvda~~  121 (720)
T TIGR00490       105 RAMRAVDGAIVVVCAVE  121 (720)
T ss_pred             HHHHhcCEEEEEEecCC
Confidence                     88999876

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=98.08  E-value=6.1e-06  Score=56.19  Aligned_cols=64  Identities=19%  Similarity=0.178  Sum_probs=42.7

Q ss_pred             eccCCCcceeeeecccc--CcCCC------------------CCCCccceEEEEEecCcEEEEEEeeCCCCccce-----
Q psy2967          21 MRKITKGNVTIWPVPLS--GQFSQ------------------DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS-----   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~--~~~~~------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----   75 (101)
                      +|.+++|||||++++..  +....                  ...-|+......+..++.++.+|||+|+..+..     
T Consensus         5 vGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~   84 (270)
T cd01886           5 IAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIEVERS   84 (270)
T ss_pred             EcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            58899999999999863  21100                  011122222234667889999999999876654     


Q ss_pred             -------EEEEECCCh
Q psy2967          76 -------IYMVDAADT   84 (101)
Q Consensus        76 -------i~v~d~~~~   84 (101)
                             ++|+|..+.
T Consensus        85 l~~aD~ailVVDa~~g  100 (270)
T cd01886          85 LRVLDGAVAVFDAVAG  100 (270)
T ss_pred             HHHcCEEEEEEECCCC
Confidence                   888898764

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>COG1160 Predicted GTPases [General function prediction only]

Probab=98.07  E-value=7.4e-06  Score=58.93  Aligned_cols=63  Identities=13%  Similarity=0.106  Sum_probs=45.7

Q ss_pred             eccCCCcceeeeeccccCcC--CCCCCCccc-eEEEEEecCcEEEEEEeeCCCCccce---------------------E
Q psy2967          21 MRKITKGNVTIWPVPLSGQF--SQDMIPTVG-FNMRKITKGNVTIKVWDIGGQPRFRS---------------------I   76 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~--~~~~~~t~~-~~~~~~~~~~~~~~i~D~~G~~~~~~---------------------i   76 (101)
                      ||-||||||||.||+++...  ..+++-+.. -.+......+..+.+.||+|-+....                     |
T Consensus         9 VGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvil   88 (444)
T COG1160           9 VGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVIL   88 (444)
T ss_pred             ECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEE
Confidence            69999999999999998653  333333333 33345667777899999999875442                     8


Q ss_pred             EEEECCC
Q psy2967          77 YMVDAAD   83 (101)
Q Consensus        77 ~v~d~~~   83 (101)
                      ||+|...
T Consensus        89 fvVD~~~   95 (444)
T COG1160          89 FVVDGRE   95 (444)
T ss_pred             EEEeCCC
Confidence            8999876

>KOG1423|consensus

Probab=98.06  E-value=1e-05  Score=56.04  Aligned_cols=51  Identities=18%  Similarity=0.162  Sum_probs=36.8

Q ss_pred             eccCCCcceeeeeccccCcCCC---CCCCccceEEEEEecCcEEEEEEeeCCCC
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQ---DMIPTVGFNMRKITKGNVTIKVWDIGGQP   71 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~D~~G~~   71 (101)
                      +|.||||||+|.|+.++.+...   ....|..-..-.+..+...+.++||+|--
T Consensus        78 IG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlv  131 (379)
T KOG1423|consen   78 IGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLV  131 (379)
T ss_pred             EcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCccc
Confidence            5999999999999999876542   22222222223467788999999999953

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=98.05  E-value=2.5e-06  Score=56.19  Aligned_cols=31  Identities=23%  Similarity=0.374  Sum_probs=25.1

Q ss_pred             EEecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          54 KITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        54 ~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      .+..++..+.+||++|+..|..            |+|+|.++.
T Consensus        71 ~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~  113 (219)
T cd01883          71 KFETEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKG  113 (219)
T ss_pred             EEeeCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCC
Confidence            3566789999999999876544            889999874

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>TIGR00484 EF-G translation elongation factor EF-G

Probab=98.05  E-value=6.8e-06  Score=62.31  Aligned_cols=69  Identities=17%  Similarity=0.162  Sum_probs=46.3

Q ss_pred             eccCCCcceeeeecccc--CcCCC--C----------------CCCccceEEEEEecCcEEEEEEeeCCCCccce-----
Q psy2967          21 MRKITKGNVTIWPVPLS--GQFSQ--D----------------MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS-----   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~--~~~~~--~----------------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----   75 (101)
                      +|-.++|||||++++..  +....  .                ..-|+......+..++..+.+|||+|+.++..     
T Consensus        16 iG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~   95 (689)
T TIGR00484        16 SAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTVEVERS   95 (689)
T ss_pred             ECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhHHHHHH
Confidence            59999999999999863  11100  0                11122222234667889999999999987654     


Q ss_pred             -------EEEEECCChhhHHH
Q psy2967          76 -------IYMVDAADTDKLEA   89 (101)
Q Consensus        76 -------i~v~d~~~~~sf~~   89 (101)
                             ++|+|.++....+.
T Consensus        96 l~~~D~~ilVvda~~g~~~~~  116 (689)
T TIGR00484        96 LRVLDGAVAVLDAVGGVQPQS  116 (689)
T ss_pred             HHHhCEEEEEEeCCCCCChhH
Confidence                   89999987655443

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=98.04  E-value=3.6e-06  Score=60.19  Aligned_cols=25  Identities=12%  Similarity=0.246  Sum_probs=21.6

Q ss_pred             cEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          59 NVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        59 ~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      ...+.+||++|+++|..            ++|+|.++
T Consensus        79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~  115 (406)
T TIGR03680        79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANE  115 (406)
T ss_pred             ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCC
Confidence            46899999999998866            89999985

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>TIGR00503 prfC peptide chain release factor 3

Probab=98.03  E-value=5.3e-06  Score=61.26  Aligned_cols=64  Identities=22%  Similarity=0.350  Sum_probs=43.2

Q ss_pred             eccCCCcceeeeecccc--CcCCC---------------C---CCCccceEE----EEEecCcEEEEEEeeCCCCccce-
Q psy2967          21 MRKITKGNVTIWPVPLS--GQFSQ---------------D---MIPTVGFNM----RKITKGNVTIKVWDIGGQPRFRS-   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~--~~~~~---------------~---~~~t~~~~~----~~~~~~~~~~~i~D~~G~~~~~~-   75 (101)
                      +|.+++|||||+.++..  +....               +   .+...|..+    ..++.+++.+.+|||+|+..|.. 
T Consensus        17 iGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~~df~~~   96 (527)
T TIGR00503        17 ISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGHEDFSED   96 (527)
T ss_pred             EcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCChhhHHHH
Confidence            58899999999999752  21100               0   011122222    34677889999999999987654 


Q ss_pred             -----------EEEEECCCh
Q psy2967          76 -----------IYMVDAADT   84 (101)
Q Consensus        76 -----------i~v~d~~~~   84 (101)
                                 |+|+|.++.
T Consensus        97 ~~~~l~~aD~aIlVvDa~~g  116 (527)
T TIGR00503        97 TYRTLTAVDNCLMVIDAAKG  116 (527)
T ss_pred             HHHHHHhCCEEEEEEECCCC
Confidence                       889998864

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>KOG1489|consensus

Probab=98.03  E-value=1.1e-05  Score=56.07  Aligned_cols=79  Identities=19%  Similarity=0.259  Sum_probs=51.3

Q ss_pred             cceeeeEeccCCCcceeeeeccccCcC-CCCC-----CCccceEEEEEecCcE-EEEEEeeCCCCccce-----------
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLSGQF-SQDM-----IPTVGFNMRKITKGNV-TIKVWDIGGQPRFRS-----------   75 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~-~~~~-----~~t~~~~~~~~~~~~~-~~~i~D~~G~~~~~~-----------   75 (101)
                      |+-+|+ ||-||+|||||++.+..-+. ...|     .|++|    .+..... .+.+=|.+|--+=..           
T Consensus       196 iadvGL-VG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG----~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLr  270 (366)
T KOG1489|consen  196 IADVGL-VGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIG----TVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLR  270 (366)
T ss_pred             ecccce-ecCCCCcHHHHHHHhhccCCcccccceeeeccccc----eeeccccceeEeccCccccccccccCcccHHHHH
Confidence            556665 59999999999999986442 1122     34444    3333333 288889988532211           


Q ss_pred             --------EEEEECCCh---hhHHHHHHHHHHH
Q psy2967          76 --------IYMVDAADT---DKLEASRNELHAL   97 (101)
Q Consensus        76 --------i~v~d~~~~---~sf~~~~~~~~~i   97 (101)
                              +||+|++..   +-++.+.....|+
T Consensus       271 HiER~~~l~fVvD~s~~~~~~p~~~~~lL~~EL  303 (366)
T KOG1489|consen  271 HIERCKGLLFVVDLSGKQLRNPWQQLQLLIEEL  303 (366)
T ss_pred             HHHhhceEEEEEECCCcccCCHHHHHHHHHHHH
Confidence                    889999988   6676666555544

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=98.02  E-value=4.4e-06  Score=59.89  Aligned_cols=24  Identities=17%  Similarity=0.314  Sum_probs=20.7

Q ss_pred             EEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          60 VTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        60 ~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      ..+.+||++|+++|..            ++|+|.++
T Consensus        85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~  120 (411)
T PRK04000         85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANE  120 (411)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCC
Confidence            6899999999988754            88999985

>KOG1191|consensus

Probab=98.01  E-value=8e-06  Score=59.36  Aligned_cols=52  Identities=13%  Similarity=0.146  Sum_probs=37.7

Q ss_pred             eccCCCcceeeeeccccCcCC--CCCCCccceEEE-EEecCcEEEEEEeeCCCCc
Q psy2967          21 MRKITKGNVTIWPVPLSGQFS--QDMIPTVGFNMR-KITKGNVTIKVWDIGGQPR   72 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~--~~~~~t~~~~~~-~~~~~~~~~~i~D~~G~~~   72 (101)
                      +|.||||||||+|.+...+..  ....-|...-++ .++.+++.+.+.||+|-.+
T Consensus       274 vGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe  328 (531)
T KOG1191|consen  274 VGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIRE  328 (531)
T ss_pred             EcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEecccccc
Confidence            499999999999999976533  222233333333 3678999999999999765

>PRK12740 elongation factor G; Reviewed

Probab=98.01  E-value=7.7e-06  Score=61.74  Aligned_cols=71  Identities=13%  Similarity=0.066  Sum_probs=49.1

Q ss_pred             eccCCCcceeeeeccccCc--CCC------------------CCCCccceEEEEEecCcEEEEEEeeCCCCccce-----
Q psy2967          21 MRKITKGNVTIWPVPLSGQ--FSQ------------------DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS-----   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~--~~~------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----   75 (101)
                      +|..++|||||+.++....  ...                  +...|++.....+..+++.+.+||++|+..+..     
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~   80 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA   80 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            5788999999999984311  000                  122344444455677889999999999976533     


Q ss_pred             -------EEEEECCChhhHHHHH
Q psy2967          76 -------IYMVDAADTDKLEASR   91 (101)
Q Consensus        76 -------i~v~d~~~~~sf~~~~   91 (101)
                             ++|+|.++..+.....
T Consensus        81 l~~aD~vllvvd~~~~~~~~~~~  103 (668)
T PRK12740         81 LRVLDGAVVVVCAVGGVEPQTET  103 (668)
T ss_pred             HHHhCeEEEEEeCCCCcCHHHHH
Confidence                   8899998876655543

>PLN03126 Elongation factor Tu; Provisional

Probab=97.94  E-value=6.6e-06  Score=60.09  Aligned_cols=71  Identities=17%  Similarity=0.220  Sum_probs=45.1

Q ss_pred             cceeeeE-eccCCCcceeeeeccccC------cCCCCC--------CCccceE----EEEEecCcEEEEEEeeCCCCccc
Q psy2967          14 IPTVGFN-MRKITKGNVTIWPVPLSG------QFSQDM--------IPTVGFN----MRKITKGNVTIKVWDIGGQPRFR   74 (101)
Q Consensus        14 ~~~~g~~-vG~~~vGKtsl~~~~~~~------~~~~~~--------~~t~~~~----~~~~~~~~~~~~i~D~~G~~~~~   74 (101)
                      -|.+.+. +|..++|||||+.+++..      ...+.+        +...|..    ...+..++..+.++|++|+++|-
T Consensus        79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~  158 (478)
T PLN03126         79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV  158 (478)
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHH
Confidence            3455555 499999999999999851      111100        1112222    22345667889999999998875


Q ss_pred             e------------EEEEECCCh
Q psy2967          75 S------------IYMVDAADT   84 (101)
Q Consensus        75 ~------------i~v~d~~~~   84 (101)
                      .            ++|+|..+-
T Consensus       159 ~~~~~g~~~aD~ailVVda~~G  180 (478)
T PLN03126        159 KNMITGAAQMDGAILVVSGADG  180 (478)
T ss_pred             HHHHHHHhhCCEEEEEEECCCC
Confidence            4            777876643

>COG1160 Predicted GTPases [General function prediction only]

Probab=97.94  E-value=3.6e-05  Score=55.48  Aligned_cols=54  Identities=13%  Similarity=0.119  Sum_probs=37.9

Q ss_pred             eEeccCCCcceeeeeccccCcCC--CCCCCccceEE-EEEecCcEEEEEEeeCCCCc
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFS--QDMIPTVGFNM-RKITKGNVTIKVWDIGGQPR   72 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~--~~~~~t~~~~~-~~~~~~~~~~~i~D~~G~~~   72 (101)
                      -.+|-||||||||+|++.+.+-.  ....-|....+ ..++.++-.+.+.||+|-.+
T Consensus       182 aiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRr  238 (444)
T COG1160         182 AIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRR  238 (444)
T ss_pred             EEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCc
Confidence            33699999999999999976532  22233333333 34677888999999999754

>cd01856 YlqF YlqF

Probab=97.93  E-value=8.2e-06  Score=51.72  Aligned_cols=49  Identities=14%  Similarity=0.066  Sum_probs=32.0

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceE--EEEEecCcEEEEEEeeCCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFN--MRKITKGNVTIKVWDIGGQ   70 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~D~~G~   70 (101)
                      .+|.++||||||++++....+. ...+..+..  ...+... ..+.++||+|-
T Consensus       120 ~~G~~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~  170 (171)
T cd01856         120 VVGIPNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKIS-PGIYLLDTPGI  170 (171)
T ss_pred             EECCCCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence            4699999999999999987664 222222222  2222222 45789999983

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=97.92  E-value=3.4e-05  Score=50.63  Aligned_cols=51  Identities=14%  Similarity=0.011  Sum_probs=33.5

Q ss_pred             EeccCCCcceeeeeccccCcCCCCC----CCccceEEEEEecCcEEEEEEeeCCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDM----IPTVGFNMRKITKGNVTIKVWDIGGQ   70 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~G~   70 (101)
                      .+|..|+||||+.+.+.+.+..+..    ..|..+........+..+.++||+|-
T Consensus         5 llG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl   59 (212)
T PF04548_consen    5 LLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGL   59 (212)
T ss_dssp             EECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SS
T ss_pred             EECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCC
Confidence            4699999999999999976644322    23444555555678899999999994

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>KOG3905|consensus

Probab=97.90  E-value=3e-05  Score=54.38  Aligned_cols=79  Identities=13%  Similarity=0.174  Sum_probs=54.9

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEEE--e----cCcEEEEEEeeCCCCccce----------------E
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKI--T----KGNVTIKVWDIGGQPRFRS----------------I   76 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~--~----~~~~~~~i~D~~G~~~~~~----------------i   76 (101)
                      +++|+.++|||||+.++.+.+   .+.+-.|..|..+  .    ..-..+.+|-..|......                |
T Consensus        56 lvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetlvi  132 (473)
T KOG3905|consen   56 LVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETLVI  132 (473)
T ss_pred             EEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceEEE
Confidence            345899999999999998765   3444455555432  2    2236778887777653332                8


Q ss_pred             EEEECCChhh-HHHHHHHHHHHHHh
Q psy2967          77 YMVDAADTDK-LEASRNELHALIEK  100 (101)
Q Consensus        77 ~v~d~~~~~s-f~~~~~~~~~i~~~  100 (101)
                      ++.|++++.. ++.+++|..-+.+|
T Consensus       133 ltasms~Pw~~lesLqkWa~Vl~eh  157 (473)
T KOG3905|consen  133 LTASMSNPWTLLESLQKWASVLREH  157 (473)
T ss_pred             EEEecCCcHHHHHHHHHHHHHHHHH
Confidence            8899999954 67778998877665

>cd01884 EF_Tu EF-Tu subfamily

Probab=97.88  E-value=1.4e-05  Score=51.99  Aligned_cols=63  Identities=16%  Similarity=0.105  Sum_probs=40.4

Q ss_pred             eccCCCcceeeeeccccCc--------CCC----------CCCCccceEEEEEecCcEEEEEEeeCCCCccce-------
Q psy2967          21 MRKITKGNVTIWPVPLSGQ--------FSQ----------DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS-------   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~--------~~~----------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------   75 (101)
                      +|-.++|||||+.++....        ...          ...-|+......+..++..+.+.||+|+..|..       
T Consensus         8 iGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~   87 (195)
T cd01884           8 IGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKNMITGAA   87 (195)
T ss_pred             ECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHHHHHHhh
Confidence            4889999999999987530        000          011112222223456678889999999876644       


Q ss_pred             -----EEEEECCC
Q psy2967          76 -----IYMVDAAD   83 (101)
Q Consensus        76 -----i~v~d~~~   83 (101)
                           ++|+|...
T Consensus        88 ~~D~~ilVvda~~  100 (195)
T cd01884          88 QMDGAILVVSATD  100 (195)
T ss_pred             hCCEEEEEEECCC
Confidence                 77888765

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=97.86  E-value=2.8e-05  Score=54.16  Aligned_cols=75  Identities=15%  Similarity=0.087  Sum_probs=47.0

Q ss_pred             eccCCCcceeeeeccccCcCCC-CCC-CccceEEEEEecCcEEEEEEeeCCCCccc--------e-----------EEEE
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQ-DMI-PTVGFNMRKITKGNVTIKVWDIGGQPRFR--------S-----------IYMV   79 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~-~~~-~t~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~-----------i~v~   79 (101)
                      ||.|+||||||++.+.+-+..- +|+ .|...-=-.+.+++..+++.|++|--.-.        .           ++|.
T Consensus        69 VGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVl  148 (365)
T COG1163          69 VGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVL  148 (365)
T ss_pred             EcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEE
Confidence            5889999999999999754321 222 11111111267899999999998642111        1           8889


Q ss_pred             ECCChhh-HHHHHHHHH
Q psy2967          80 DAADTDK-LEASRNELH   95 (101)
Q Consensus        80 d~~~~~s-f~~~~~~~~   95 (101)
                      |+..... .+.+.+.+.
T Consensus       149 d~~~~~~~~~~i~~ELe  165 (365)
T COG1163         149 DVFEDPHHRDIIERELE  165 (365)
T ss_pred             ecCCChhHHHHHHHHHH
Confidence            9986655 445544443

>cd01855 YqeH YqeH

Probab=97.86  E-value=7e-06  Score=52.74  Aligned_cols=20  Identities=15%  Similarity=0.117  Sum_probs=17.3

Q ss_pred             EeccCCCcceeeeeccccCc
Q psy2967          20 NMRKITKGNVTIWPVPLSGQ   39 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~   39 (101)
                      .+|.+|||||||++.+....
T Consensus       132 ~~G~~nvGKStliN~l~~~~  151 (190)
T cd01855         132 VVGATNVGKSTLINALLKKD  151 (190)
T ss_pred             EEcCCCCCHHHHHHHHHHhc
Confidence            46999999999999998754

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK12736 elongation factor Tu; Reviewed

Probab=97.82  E-value=3.4e-05  Score=55.06  Aligned_cols=63  Identities=14%  Similarity=0.120  Sum_probs=41.2

Q ss_pred             eccCCCcceeeeeccccCc-------CC---------C--CCCCccceEEEEEecCcEEEEEEeeCCCCccce-------
Q psy2967          21 MRKITKGNVTIWPVPLSGQ-------FS---------Q--DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS-------   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~-------~~---------~--~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------   75 (101)
                      +|-.++|||||+.++....       +.         +  +..-|+......+..++..+.++|++|+++|-.       
T Consensus        18 ~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~   97 (394)
T PRK12736         18 IGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAA   97 (394)
T ss_pred             EccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHHHHHHHHHh
Confidence            5999999999999987521       00         0  111222222223445667889999999987754       


Q ss_pred             -----EEEEECCC
Q psy2967          76 -----IYMVDAAD   83 (101)
Q Consensus        76 -----i~v~d~~~   83 (101)
                           ++|+|..+
T Consensus        98 ~~d~~llVvd~~~  110 (394)
T PRK12736         98 QMDGAILVVAATD  110 (394)
T ss_pred             hCCEEEEEEECCC
Confidence                 88899875

>KOG0705|consensus

Probab=97.81  E-value=8.3e-05  Score=55.11  Aligned_cols=83  Identities=19%  Similarity=0.387  Sum_probs=60.4

Q ss_pred             cceeeeE-eccCCCcceeeeeccccCcCCCCCCCccceEEE--E-EecCcEEEEEEeeCCCCccce-------EEEEECC
Q psy2967          14 IPTVGFN-MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K-ITKGNVTIKVWDIGGQPRFRS-------IYMVDAA   82 (101)
Q Consensus        14 ~~~~g~~-vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~-~~~~~~~~~i~D~~G~~~~~~-------i~v~d~~   82 (101)
                      ||-..+- ||...+|||+|++||..+.+..+..| .+..++  . +++....+.+.|.+|...-.-       ||||.+.
T Consensus        28 ipelk~givg~~~sgktalvhr~ltgty~~~e~~-e~~~~kkE~vv~gqs~lLlirdeg~~~~aQft~wvdavIfvf~~~  106 (749)
T KOG0705|consen   28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDESP-EGGRFKKEVVVDGQSHLLLIRDEGGHPDAQFCQWVDAVVFVFSVE  106 (749)
T ss_pred             cchhheeeeecccCCceeeeeeeccceeccccCC-cCccceeeEEeeccceEeeeecccCCchhhhhhhccceEEEEEec
Confidence            4444443 58899999999999999998855444 444432  2 567788899999888543222       9999999


Q ss_pred             ChhhHHHHHHHHHHH
Q psy2967          83 DTDKLEASRNELHAL   97 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i   97 (101)
                      |.++|+.++....++
T Consensus       107 d~~s~q~v~~l~~~l  121 (749)
T KOG0705|consen  107 DEQSFQAVQALAHEM  121 (749)
T ss_pred             cccCHHHHHHHHhhc
Confidence            999999987665443

>cd04165 GTPBP1_like GTPBP1-like

Probab=97.80  E-value=3.7e-05  Score=51.01  Aligned_cols=22  Identities=18%  Similarity=0.380  Sum_probs=18.8

Q ss_pred             eccCCCcceeeeeccccCcCCC
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQ   42 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~   42 (101)
                      +|+.++|||||+.+|..+.+.+
T Consensus         5 ~G~~~~GKttl~~~~~~~~~~~   26 (224)
T cd04165           5 VGNVDAGKSTLLGVLTQGELDN   26 (224)
T ss_pred             ECCCCCCHHHHHHHHHhCCcCC
Confidence            5999999999999999876643

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd01858 NGP_1 NGP-1

Probab=97.80  E-value=1.3e-05  Score=50.11  Aligned_cols=48  Identities=21%  Similarity=0.131  Sum_probs=29.1

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEE--EEEecCcEEEEEEeeCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM--RKITKGNVTIKVWDIGG   69 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G   69 (101)
                      .+|.+|||||||++++...... ...++-|...  ..+.. +-.+.+.||+|
T Consensus       107 ~~G~~nvGKStliN~l~~~~~~-~~~~~~g~T~~~~~~~~-~~~~~liDtPG  156 (157)
T cd01858         107 FIGYPNVGKSSIINTLRSKKVC-KVAPIPGETKVWQYITL-MKRIYLIDCPG  156 (157)
T ss_pred             EEeCCCCChHHHHHHHhcCCce-eeCCCCCeeEeEEEEEc-CCCEEEEECcC
Confidence            3699999999999999875432 2222222211  11221 12367889998

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd00066 G-alpha G protein alpha subunit

Probab=97.80  E-value=8.2e-05  Score=51.75  Aligned_cols=56  Identities=25%  Similarity=0.472  Sum_probs=44.5

Q ss_pred             CCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCCh----------hhHHHHHHHHHHHHH
Q psy2967          44 MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT----------DKLEASRNELHALIE   99 (101)
Q Consensus        44 ~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~----------~sf~~~~~~~~~i~~   99 (101)
                      ..||.|+....+..+++.+.+||++||...|.            +||+|+++.          .+++++...++++.+
T Consensus       145 r~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~  222 (317)
T cd00066         145 RVKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICN  222 (317)
T ss_pred             ecccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHh
Confidence            35777777777888899999999999987666            899999974          567777777777654

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=97.80  E-value=0.00012  Score=55.42  Aligned_cols=56  Identities=20%  Similarity=0.127  Sum_probs=36.5

Q ss_pred             eeeEeccCCCcceeeeeccccCc-CCCC-C-CCccceEEEEEecCcEEEEEEeeCCCCc
Q psy2967          17 VGFNMRKITKGNVTIWPVPLSGQ-FSQD-M-IPTVGFNMRKITKGNVTIKVWDIGGQPR   72 (101)
Q Consensus        17 ~g~~vG~~~vGKtsl~~~~~~~~-~~~~-~-~~t~~~~~~~~~~~~~~~~i~D~~G~~~   72 (101)
                      .-+.+|.+||||||++|.+++.. +... . ..|...........+..+.++||+|-..
T Consensus       120 rIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~d  178 (763)
T TIGR00993       120 NILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKS  178 (763)
T ss_pred             EEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCc
Confidence            34456999999999999999865 3222 1 2333332222234567899999999764

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PRK12735 elongation factor Tu; Reviewed

Probab=97.79  E-value=1.5e-05  Score=56.86  Aligned_cols=70  Identities=19%  Similarity=0.194  Sum_probs=43.7

Q ss_pred             ceeeeE-eccCCCcceeeeeccccC-------cCC-----C------CCCCccceEEEEEecCcEEEEEEeeCCCCccce
Q psy2967          15 PTVGFN-MRKITKGNVTIWPVPLSG-------QFS-----Q------DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS   75 (101)
Q Consensus        15 ~~~g~~-vG~~~vGKtsl~~~~~~~-------~~~-----~------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~   75 (101)
                      |.+.+. +|-.++|||||+.++...       .+.     +      ..--|+......+..++..+.++|++|+++|-.
T Consensus        11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~~   90 (396)
T PRK12735         11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYVK   90 (396)
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHHH
Confidence            444444 499999999999999851       110     0      011111222222445667889999999987644


Q ss_pred             ------------EEEEECCCh
Q psy2967          76 ------------IYMVDAADT   84 (101)
Q Consensus        76 ------------i~v~d~~~~   84 (101)
                                  ++|+|..+.
T Consensus        91 ~~~~~~~~aD~~llVvda~~g  111 (396)
T PRK12735         91 NMITGAAQMDGAILVVSAADG  111 (396)
T ss_pred             HHHhhhccCCEEEEEEECCCC
Confidence                        888888763

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.79  E-value=2.1e-05  Score=50.28  Aligned_cols=50  Identities=12%  Similarity=0.071  Sum_probs=31.2

Q ss_pred             eeEeccCCCcceeeeeccccCcCCCCCCCccceEE--EEEecCcEEEEEEeeCC
Q psy2967          18 GFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM--RKITKGNVTIKVWDIGG   69 (101)
Q Consensus        18 g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G   69 (101)
                      -..+|.+|||||||++++.+.... ...+.-|...  ..+.. .-.+.++|++|
T Consensus       120 ~~~vG~pnvGKSslin~l~~~~~~-~~~~~pg~T~~~~~~~~-~~~~~l~DtPG  171 (172)
T cd04178         120 VGVVGFPNVGKSSLINSLKRSRAC-NVGATPGVTKSMQEVHL-DKKVKLLDSPG  171 (172)
T ss_pred             EEEEcCCCCCHHHHHHHHhCcccc-eecCCCCeEcceEEEEe-CCCEEEEECcC
Confidence            345799999999999999976542 2222223221  22222 23578999998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=97.73  E-value=6.4e-05  Score=56.49  Aligned_cols=65  Identities=15%  Similarity=0.246  Sum_probs=43.8

Q ss_pred             eccCCCcceeeeeccccCc-CCCCCCCccceEEE--EEecCcEEEEEEeeCCCCccce--------------------EE
Q psy2967          21 MRKITKGNVTIWPVPLSGQ-FSQDMIPTVGFNMR--KITKGNVTIKVWDIGGQPRFRS--------------------IY   77 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~-~~~~~~~t~~~~~~--~~~~~~~~~~i~D~~G~~~~~~--------------------i~   77 (101)
                      +|.||||||||.|++++.. -..++. -+-++.+  ....++..+++.|.+|--....                    |-
T Consensus         9 vGNPNvGKTtlFN~LTG~~q~VgNwp-GvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivn   87 (653)
T COG0370           9 VGNPNVGKTTLFNALTGANQKVGNWP-GVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVN   87 (653)
T ss_pred             ecCCCccHHHHHHHHhccCceecCCC-CeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEE
Confidence            5999999999999999743 222222 1222222  2567778899999999644333                    55


Q ss_pred             EEECCChhh
Q psy2967          78 MVDAADTDK   86 (101)
Q Consensus        78 v~d~~~~~s   86 (101)
                      |.|.+|.++
T Consensus        88 VvDAtnLeR   96 (653)
T COG0370          88 VVDATNLER   96 (653)
T ss_pred             EcccchHHH
Confidence            778888766

>smart00275 G_alpha G protein alpha subunit

Probab=97.73  E-value=0.00016  Score=50.82  Aligned_cols=56  Identities=21%  Similarity=0.454  Sum_probs=45.2

Q ss_pred             CCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCCh----------hhHHHHHHHHHHHHH
Q psy2967          44 MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT----------DKLEASRNELHALIE   99 (101)
Q Consensus        44 ~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~----------~sf~~~~~~~~~i~~   99 (101)
                      ..||.|+....+..++..+.+||.+||...|.            +||+|+++.          .+++++...++.+++
T Consensus       168 r~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~  245 (342)
T smart00275      168 RVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICN  245 (342)
T ss_pred             eCCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHc
Confidence            45777888778888999999999999987666            889999973          567888777777664

Subunit of G proteins that contains the guanine nucleotide binding site

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=97.71  E-value=3.5e-05  Score=52.51  Aligned_cols=51  Identities=12%  Similarity=0.066  Sum_probs=31.3

Q ss_pred             eeEeccCCCcceeeeeccccCcCCCCCCCccceEE--EEEecCcEEEEEEeeCCC
Q psy2967          18 GFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM--RKITKGNVTIKVWDIGGQ   70 (101)
Q Consensus        18 g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G~   70 (101)
                      -+.+|.+|||||||++++....... ..+..|...  ..+... -.+.++||+|-
T Consensus       121 ~~~vG~~nvGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~-~~~~l~DtPG~  173 (276)
T TIGR03596       121 AMIVGIPNVGKSTLINRLAGKKVAK-VGNRPGVTKGQQWIKLS-DGLELLDTPGI  173 (276)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCccc-cCCCCCeecceEEEEeC-CCEEEEECCCc
Confidence            3446999999999999998755321 122222111  122222 24789999997

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PLN00043 elongation factor 1-alpha; Provisional

Probab=97.70  E-value=1e-05  Score=58.64  Aligned_cols=30  Identities=20%  Similarity=0.337  Sum_probs=25.4

Q ss_pred             EEecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          54 KITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        54 ~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      .+..++..+.+.|++|+++|-.            |+|+|.++
T Consensus        79 ~~~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~  120 (447)
T PLN00043         79 KFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT  120 (447)
T ss_pred             EecCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc
Confidence            3566788999999999998865            99999886

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=97.69  E-value=5.1e-05  Score=52.03  Aligned_cols=52  Identities=12%  Similarity=0.049  Sum_probs=32.5

Q ss_pred             eeEeccCCCcceeeeeccccCcCCCCCCCccceEE--EEEecCcEEEEEEeeCCCC
Q psy2967          18 GFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM--RKITKGNVTIKVWDIGGQP   71 (101)
Q Consensus        18 g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G~~   71 (101)
                      ...+|.+|||||||++++...... ...++-|...  ..+.. +-.+.++||+|--
T Consensus       124 ~~~~G~pnvGKSsliN~l~~~~~~-~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi~  177 (287)
T PRK09563        124 AMIIGIPNVGKSTLINRLAGKKIA-KTGNRPGVTKAQQWIKL-GKGLELLDTPGIL  177 (287)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCcc-ccCCCCCeEEEEEEEEe-CCcEEEEECCCcC
Confidence            334699999999999999976543 2222223221  22222 1247899999963

>PRK12739 elongation factor G; Reviewed

Probab=97.57  E-value=0.00022  Score=54.32  Aligned_cols=65  Identities=18%  Similarity=0.087  Sum_probs=43.8

Q ss_pred             eccCCCcceeeeeccccC--cCC------C------------CCCCccceEEEEEecCcEEEEEEeeCCCCccce-----
Q psy2967          21 MRKITKGNVTIWPVPLSG--QFS------Q------------DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS-----   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~--~~~------~------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----   75 (101)
                      +|-.++|||||++++...  ...      .            ...-|+......+..++..+.++||+|+..|..     
T Consensus        14 iGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f~~e~~~a   93 (691)
T PRK12739         14 MAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDFTIEVERS   93 (691)
T ss_pred             ECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHHHHHHHHH
Confidence            599999999999998631  110      0            111222232334567889999999999876544     


Q ss_pred             -------EEEEECCChh
Q psy2967          76 -------IYMVDAADTD   85 (101)
Q Consensus        76 -------i~v~d~~~~~   85 (101)
                             |+|+|..+..
T Consensus        94 l~~~D~~ilVvDa~~g~  110 (691)
T PRK12739         94 LRVLDGAVAVFDAVSGV  110 (691)
T ss_pred             HHHhCeEEEEEeCCCCC
Confidence                   8899987653

>CHL00071 tufA elongation factor Tu

Probab=97.57  E-value=6.1e-05  Score=54.03  Aligned_cols=69  Identities=19%  Similarity=0.247  Sum_probs=42.8

Q ss_pred             ceeeeE-eccCCCcceeeeeccccCcCC------CCCC--------CccceEE----EEEecCcEEEEEEeeCCCCccce
Q psy2967          15 PTVGFN-MRKITKGNVTIWPVPLSGQFS------QDMI--------PTVGFNM----RKITKGNVTIKVWDIGGQPRFRS   75 (101)
Q Consensus        15 ~~~g~~-vG~~~vGKtsl~~~~~~~~~~------~~~~--------~t~~~~~----~~~~~~~~~~~i~D~~G~~~~~~   75 (101)
                      |.+.+. +|-+++|||||+++++...-.      ..+.        -..|...    ..+..++..+.+.|++|+.+|-.
T Consensus        11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~~   90 (409)
T CHL00071         11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVK   90 (409)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHHH
Confidence            334444 499999999999999853110      0000        0012221    22445667888999999887644


Q ss_pred             ------------EEEEECCC
Q psy2967          76 ------------IYMVDAAD   83 (101)
Q Consensus        76 ------------i~v~d~~~   83 (101)
                                  ++|+|..+
T Consensus        91 ~~~~~~~~~D~~ilVvda~~  110 (409)
T CHL00071         91 NMITGAAQMDGAILVVSAAD  110 (409)
T ss_pred             HHHHHHHhCCEEEEEEECCC
Confidence                        77888765

>KOG1707|consensus

Probab=97.56  E-value=0.0002  Score=53.18  Aligned_cols=78  Identities=13%  Similarity=0.098  Sum_probs=51.6

Q ss_pred             eeeeEeccCCCcceeeeeccccCcCCCCCCCccceEE----EEEecCcEEEEEEeeCCC--Cccce--------EEEEEC
Q psy2967          16 TVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM----RKITKGNVTIKVWDIGGQ--PRFRS--------IYMVDA   81 (101)
Q Consensus        16 ~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~D~~G~--~~~~~--------i~v~d~   81 (101)
                      .-.+++|+.++|||.++..|.++.+..++..+....+    ..+.+....+.+-|..-.  ....+        .++||.
T Consensus       426 f~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~~~~~l~~ke~~cDv~~~~YDs  505 (625)
T KOG1707|consen  426 FQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGEDDQDFLTSKEAACDVACLVYDS  505 (625)
T ss_pred             eeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCccccccccCccceeeeEEEeccc
Confidence            3446679999999999999999887776555554333    234444455555554421  11111        889999


Q ss_pred             CChhhHHHHHHH
Q psy2967          82 ADTDKLEASRNE   93 (101)
Q Consensus        82 ~~~~sf~~~~~~   93 (101)
                      +++.||+-+...
T Consensus       506 S~p~sf~~~a~v  517 (625)
T KOG1707|consen  506 SNPRSFEYLAEV  517 (625)
T ss_pred             CCchHHHHHHHH
Confidence            999999877543

>cd01900 YchF YchF subfamily

Probab=97.55  E-value=0.0001  Score=50.44  Aligned_cols=51  Identities=18%  Similarity=0.171  Sum_probs=32.0

Q ss_pred             eccCCCcceeeeeccccCcCCC-CC-CCccceEEEEEe--cC---------------cEEEEEEeeCCCC
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQ-DM-IPTVGFNMRKIT--KG---------------NVTIKVWDIGGQP   71 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~-~~-~~t~~~~~~~~~--~~---------------~~~~~i~D~~G~~   71 (101)
                      ||.|+||||||+++++...... +| ..|+..+...+.  ..               ...+.+.|++|--
T Consensus         4 vG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~   73 (274)
T cd01900           4 VGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLV   73 (274)
T ss_pred             eCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcC
Confidence            6899999999999999865422 22 233333332211  11               2358999999953

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>PRK12288 GTPase RsgA; Reviewed

Probab=97.55  E-value=7e-05  Score=52.79  Aligned_cols=52  Identities=15%  Similarity=0.141  Sum_probs=32.4

Q ss_pred             EeccCCCcceeeeeccccCcCCC--C--------CCCccceEEEEEecCcEEEEEEeeCCCCccc
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQ--D--------MIPTVGFNMRKITKGNVTIKVWDIGGQPRFR   74 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~--~--------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~   74 (101)
                      -+|.+|||||||+|++.......  +        .+.|....+..+..+.   .+.||+|-..+.
T Consensus       210 ~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~  271 (347)
T PRK12288        210 FVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG  271 (347)
T ss_pred             EECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence            36999999999999999754321  1        1123334333343332   488999976543

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=97.55  E-value=5.7e-05  Score=51.79  Aligned_cols=53  Identities=11%  Similarity=0.137  Sum_probs=31.4

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCC----------CCccceEEEE--Ee--cCcEEEEEEeeCCCC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDM----------IPTVGFNMRK--IT--KGNVTIKVWDIGGQP   71 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~----------~~t~~~~~~~--~~--~~~~~~~i~D~~G~~   71 (101)
                      +++|++|+|||||++.++........          .++..+....  +.  +..+.+.++||+|-.
T Consensus         8 mVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfG   74 (281)
T PF00735_consen    8 MVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFG   74 (281)
T ss_dssp             EEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CS
T ss_pred             EEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCcc
Confidence            45699999999999999876544321          1222222222  22  335788999999843

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PTZ00258 GTP-binding protein; Provisional

Probab=97.53  E-value=0.00033  Score=50.17  Aligned_cols=51  Identities=16%  Similarity=0.149  Sum_probs=31.5

Q ss_pred             eccCCCcceeeeeccccCcCCC-CCC-CccceEEEEEec-----------------CcEEEEEEeeCCCC
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQ-DMI-PTVGFNMRKITK-----------------GNVTIKVWDIGGQP   71 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~-~~~-~t~~~~~~~~~~-----------------~~~~~~i~D~~G~~   71 (101)
                      ||.||||||||++.+....... +|. .|+..+.-.+..                 ....+.+.|++|-.
T Consensus        27 VG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv   96 (390)
T PTZ00258         27 VGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV   96 (390)
T ss_pred             ECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence            5999999999999998654321 222 223333322211                 13468999999953

>COG0218 Predicted GTPase [General function prediction only]

Probab=97.47  E-value=7.2e-05  Score=48.82  Aligned_cols=47  Identities=13%  Similarity=0.181  Sum_probs=32.1

Q ss_pred             eccCCCcceeeeeccccCcCCCCCCCccc----eEEEEEecCcEEEEEEeeCCC
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQDMIPTVG----FNMRKITKGNVTIKVWDIGGQ   70 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~D~~G~   70 (101)
                      +|-+|||||||++.+++.+-......|-|    .++-.+...   +.+.|.+|=
T Consensus        30 ~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGY   80 (200)
T COG0218          30 AGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGY   80 (200)
T ss_pred             EccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCc
Confidence            59999999999999998663223333333    554444433   778899884

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=97.47  E-value=0.00012  Score=52.48  Aligned_cols=63  Identities=17%  Similarity=0.243  Sum_probs=41.2

Q ss_pred             eccCCCcceeeeeccccCc--CCC---------------------------------CCCCccceEEEEEecCcEEEEEE
Q psy2967          21 MRKITKGNVTIWPVPLSGQ--FSQ---------------------------------DMIPTVGFNMRKITKGNVTIKVW   65 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~--~~~---------------------------------~~~~t~~~~~~~~~~~~~~~~i~   65 (101)
                      +|-.++|||||+.++....  ...                                 +..-|+...+..+..++..+.++
T Consensus         6 vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~~~li   85 (406)
T TIGR02034         6 CGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRKFIVA   85 (406)
T ss_pred             ECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeEEEEE
Confidence            5889999999999986321  110                                 00011222223355677899999


Q ss_pred             eeCCCCccce------------EEEEECCC
Q psy2967          66 DIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        66 D~~G~~~~~~------------i~v~d~~~   83 (101)
                      |++|+++|-.            ++|+|..+
T Consensus        86 DtPGh~~f~~~~~~~~~~aD~allVVda~~  115 (406)
T TIGR02034        86 DTPGHEQYTRNMATGASTADLAVLLVDARK  115 (406)
T ss_pred             eCCCHHHHHHHHHHHHhhCCEEEEEEECCC
Confidence            9999988754            88888754

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=97.40  E-value=0.00012  Score=53.11  Aligned_cols=63  Identities=16%  Similarity=0.222  Sum_probs=43.0

Q ss_pred             eccCCCcceeeeecccc--CcCCC-------------------------------CCCCccceEEEEEecCcEEEEEEee
Q psy2967          21 MRKITKGNVTIWPVPLS--GQFSQ-------------------------------DMIPTVGFNMRKITKGNVTIKVWDI   67 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~--~~~~~-------------------------------~~~~t~~~~~~~~~~~~~~~~i~D~   67 (101)
                      +|..++|||||+.+++.  +....                               +..-|+...+..+..++..+.+.|+
T Consensus        13 ~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~~i~lIDt   92 (446)
T PTZ00141         13 IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYYFTIIDA   92 (446)
T ss_pred             EecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCeEEEEEEC
Confidence            48899999999998764  11110                               0112222223345677889999999


Q ss_pred             CCCCccce------------EEEEECCC
Q psy2967          68 GGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        68 ~G~~~~~~------------i~v~d~~~   83 (101)
                      +|+++|-.            ++|+|.++
T Consensus        93 PGh~~f~~~~~~g~~~aD~ailVVda~~  120 (446)
T PTZ00141         93 PGHRDFIKNMITGTSQADVAILVVASTA  120 (446)
T ss_pred             CChHHHHHHHHHhhhhcCEEEEEEEcCC
Confidence            99988755            88999875

>PRK12289 GTPase RsgA; Reviewed

Probab=97.40  E-value=0.00011  Score=51.84  Aligned_cols=53  Identities=9%  Similarity=0.020  Sum_probs=31.9

Q ss_pred             eEeccCCCcceeeeeccccCcCCC--CC--------CCccceEEEEEecCcEEEEEEeeCCCCccc
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQ--DM--------IPTVGFNMRKITKGNVTIKVWDIGGQPRFR   74 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~--~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~   74 (101)
                      +.+|.+|||||||+|.+.......  ..        +.|.......+....   .+.||+|-..+.
T Consensus       176 v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~~  238 (352)
T PRK12289        176 VVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQPD  238 (352)
T ss_pred             EEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCccccc
Confidence            446999999999999999653221  11        123333333332222   688999975433

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=97.39  E-value=0.00013  Score=54.93  Aligned_cols=63  Identities=21%  Similarity=0.242  Sum_probs=40.9

Q ss_pred             eccCCCcceeeeeccccCc--CCCC-----------C----------------------CCccceEEEEEecCcEEEEEE
Q psy2967          21 MRKITKGNVTIWPVPLSGQ--FSQD-----------M----------------------IPTVGFNMRKITKGNVTIKVW   65 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~--~~~~-----------~----------------------~~t~~~~~~~~~~~~~~~~i~   65 (101)
                      +|.+++|||||+.++....  ..+.           .                      .-|+...+..+..++..+.++
T Consensus        30 iGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~~~~~li  109 (632)
T PRK05506         30 CGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPKRKFIVA  109 (632)
T ss_pred             ECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCCceEEEE
Confidence            5999999999999988532  1100           0                      011111222345567788999


Q ss_pred             eeCCCCccce------------EEEEECCC
Q psy2967          66 DIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        66 D~~G~~~~~~------------i~v~d~~~   83 (101)
                      |++|+++|..            ++|+|..+
T Consensus       110 DtPG~~~f~~~~~~~~~~aD~~llVvda~~  139 (632)
T PRK05506        110 DTPGHEQYTRNMVTGASTADLAIILVDARK  139 (632)
T ss_pred             ECCChHHHHHHHHHHHHhCCEEEEEEECCC
Confidence            9999987654            78888754

>COG1161 Predicted GTPases [General function prediction only]

Probab=97.38  E-value=0.00013  Score=50.88  Aligned_cols=51  Identities=16%  Similarity=-0.002  Sum_probs=32.7

Q ss_pred             eeEeccCCCcceeeeeccccCcCCCCCCCccceEEE--EEecCcEEEEEEeeCCC
Q psy2967          18 GFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KITKGNVTIKVWDIGGQ   70 (101)
Q Consensus        18 g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~D~~G~   70 (101)
                      -+.||-||||||||++++.+.... ...+.-|....  .+.. .-.+.++||+|-
T Consensus       135 v~vvG~PNVGKSslIN~L~~k~~~-~~s~~PG~Tk~~q~i~~-~~~i~LlDtPGi  187 (322)
T COG1161         135 VGVVGYPNVGKSTLINRLLGKKVA-KTSNRPGTTKGIQWIKL-DDGIYLLDTPGI  187 (322)
T ss_pred             EEEEcCCCCcHHHHHHHHhcccce-eeCCCCceecceEEEEc-CCCeEEecCCCc
Confidence            445799999999999999986653 22222243321  1221 122889999985

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=97.36  E-value=0.00023  Score=52.10  Aligned_cols=64  Identities=17%  Similarity=0.249  Sum_probs=42.2

Q ss_pred             EeccCCCcceeeeeccccCc--CCCC---------------------------------CCCccceEEEEEecCcEEEEE
Q psy2967          20 NMRKITKGNVTIWPVPLSGQ--FSQD---------------------------------MIPTVGFNMRKITKGNVTIKV   64 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~--~~~~---------------------------------~~~t~~~~~~~~~~~~~~~~i   64 (101)
                      .+|-.++|||||+.+++...  ....                                 ..-|+...+..+..++..+.+
T Consensus        32 iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~~~~i~~  111 (474)
T PRK05124         32 TCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFII  111 (474)
T ss_pred             EECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccCCcEEEE
Confidence            35999999999999986421  1100                                 001222222335566788999


Q ss_pred             EeeCCCCccce------------EEEEECCC
Q psy2967          65 WDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        65 ~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      +|++|+++|..            ++|+|..+
T Consensus       112 iDTPGh~~f~~~~~~~l~~aD~allVVDa~~  142 (474)
T PRK05124        112 ADTPGHEQYTRNMATGASTCDLAILLIDARK  142 (474)
T ss_pred             EECCCcHHHHHHHHHHHhhCCEEEEEEECCC
Confidence            99999988754            88888764

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=97.35  E-value=0.00087  Score=47.61  Aligned_cols=23  Identities=13%  Similarity=0.189  Sum_probs=18.9

Q ss_pred             eeeeEeccCCCcceeeeeccccCc
Q psy2967          16 TVGFNMRKITKGNVTIWPVPLSGQ   39 (101)
Q Consensus        16 ~~g~~vG~~~vGKtsl~~~~~~~~   39 (101)
                      .+|+ ||.||||||||++++....
T Consensus         4 ~vgI-VG~PNvGKSTLfnaLt~~~   26 (364)
T PRK09601          4 KCGI-VGLPNVGKSTLFNALTKAG   26 (364)
T ss_pred             EEEE-ECCCCCCHHHHHHHHhCCC
Confidence            3443 6999999999999999765

>PRK00049 elongation factor Tu; Reviewed

Probab=97.33  E-value=0.00017  Score=51.62  Aligned_cols=64  Identities=16%  Similarity=0.110  Sum_probs=40.6

Q ss_pred             eccCCCcceeeeeccccCcCC----------------C--CCCCccceEEEEEecCcEEEEEEeeCCCCccce-------
Q psy2967          21 MRKITKGNVTIWPVPLSGQFS----------------Q--DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS-------   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~----------------~--~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------   75 (101)
                      +|-.++|||||+.++......                +  ...-|+......+..++..+.+.|++|+.+|..       
T Consensus        18 iGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~   97 (396)
T PRK00049         18 IGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAA   97 (396)
T ss_pred             EeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHHHHHHhhhc
Confidence            488999999999998862100                0  011122222223445667888999999976644       


Q ss_pred             -----EEEEECCCh
Q psy2967          76 -----IYMVDAADT   84 (101)
Q Consensus        76 -----i~v~d~~~~   84 (101)
                           ++|+|..+.
T Consensus        98 ~aD~~llVVDa~~g  111 (396)
T PRK00049         98 QMDGAILVVSAADG  111 (396)
T ss_pred             cCCEEEEEEECCCC
Confidence                 778887653

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=97.32  E-value=0.00025  Score=47.08  Aligned_cols=51  Identities=14%  Similarity=0.160  Sum_probs=36.3

Q ss_pred             eccCCCcceeeeeccccC--cCCC---CCCCccceEEEEEe---cCcEEEEEEeeCCCC
Q psy2967          21 MRKITKGNVTIWPVPLSG--QFSQ---DMIPTVGFNMRKIT---KGNVTIKVWDIGGQP   71 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~--~~~~---~~~~t~~~~~~~~~---~~~~~~~i~D~~G~~   71 (101)
                      +|++++|||+|+|++.+.  .|.-   ....|.|+-.....   ..+..+.+.||.|-.
T Consensus        13 ~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~   71 (224)
T cd01851          13 FGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTD   71 (224)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcC
Confidence            499999999999999987  5542   22445565543322   245789999999864

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=97.28  E-value=0.00096  Score=41.55  Aligned_cols=22  Identities=9%  Similarity=0.016  Sum_probs=18.7

Q ss_pred             EeccCCCcceeeeeccccCcCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFS   41 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~   41 (101)
                      -||+.+||||||++++.+.+..
T Consensus         6 liG~~g~GKTTL~q~L~~~~~~   27 (143)
T PF10662_consen    6 LIGPSGSGKTTLAQALNGEEIR   27 (143)
T ss_pred             EECCCCCCHHHHHHHHcCCCCC
Confidence            4699999999999999987643

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=97.28  E-value=0.0002  Score=48.12  Aligned_cols=50  Identities=12%  Similarity=-0.011  Sum_probs=31.5

Q ss_pred             eEeccCCCcceeeeeccccCcCCC----------CCCCccceEEEEEecCcEEEEEEeeCCCCc
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQ----------DMIPTVGFNMRKITKGNVTIKVWDIGGQPR   72 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~----------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~   72 (101)
                      .-+|.+|||||||++++.......          ....|.......+. .   -.++||+|-..
T Consensus       124 ~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~-~---~~liDtPG~~~  183 (245)
T TIGR00157       124 VFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFH-G---GLIADTPGFNE  183 (245)
T ss_pred             EEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcC-C---cEEEeCCCccc
Confidence            346999999999999999753221          11234444443342 2   27899999654

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=97.25  E-value=7.1e-05  Score=47.46  Aligned_cols=21  Identities=10%  Similarity=0.082  Sum_probs=17.8

Q ss_pred             eEeccCCCcceeeeeccccCc
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQ   39 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~   39 (101)
                      +-+|.+|||||||+|.+....
T Consensus        39 vl~G~SGvGKSSLiN~L~~~~   59 (161)
T PF03193_consen   39 VLLGQSGVGKSSLINALLPEA   59 (161)
T ss_dssp             EEECSTTSSHHHHHHHHHTSS
T ss_pred             EEECCCCCCHHHHHHHHHhhc
Confidence            346999999999999999763

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=97.24  E-value=0.00062  Score=48.50  Aligned_cols=51  Identities=10%  Similarity=0.108  Sum_probs=26.2

Q ss_pred             eccCCCcceeeeeccccCcCCCCCCCccceE-----EEEEe-cCcEEEEEEeeCCCC
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGFN-----MRKIT-KGNVTIKVWDIGGQP   71 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~-----~~~~~-~~~~~~~i~D~~G~~   71 (101)
                      +|++|+|||||+|.+.+-...+......|..     -..+. .+--.+.+||.+|-.
T Consensus        41 ~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~g   97 (376)
T PF05049_consen   41 TGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIG   97 (376)
T ss_dssp             EESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GG
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCC
Confidence            4999999999999997632222111112210     01122 222358899999853

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=97.23  E-value=0.00019  Score=44.75  Aligned_cols=47  Identities=17%  Similarity=0.063  Sum_probs=29.3

Q ss_pred             EeccCCCcceeeeeccccCcCCC---CCCCccceEEEEEecCcEEEEEEeeCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQ---DMIPTVGFNMRKITKGNVTIKVWDIGG   69 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~D~~G   69 (101)
                      .+|.+|+|||||++.+....-..   ....|........   +..+.+.||+|
T Consensus       105 ~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtPG  154 (155)
T cd01849         105 VIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL---DNKIKLLDTPG  154 (155)
T ss_pred             EEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe---cCCEEEEECCC
Confidence            36999999999999999754211   1122222222222   23588899988

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PLN03127 Elongation factor Tu; Provisional

Probab=97.23  E-value=0.00042  Score=50.43  Aligned_cols=69  Identities=16%  Similarity=0.178  Sum_probs=43.9

Q ss_pred             ceeeeE-eccCCCcceeeeeccccC------cC----------CCC--CCCccceEEEEEecCcEEEEEEeeCCCCccce
Q psy2967          15 PTVGFN-MRKITKGNVTIWPVPLSG------QF----------SQD--MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS   75 (101)
Q Consensus        15 ~~~g~~-vG~~~vGKtsl~~~~~~~------~~----------~~~--~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~   75 (101)
                      |.+.+. +|-.++|||||+.++...      ..          .++  ..-|+......+..++..+.+.|++|+.+|-.
T Consensus        60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~~  139 (447)
T PLN03127         60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYVK  139 (447)
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchHH
Confidence            334444 499999999999998621      10          000  11233333334556677889999999987754


Q ss_pred             ------------EEEEECCC
Q psy2967          76 ------------IYMVDAAD   83 (101)
Q Consensus        76 ------------i~v~d~~~   83 (101)
                                  ++|+|..+
T Consensus       140 ~~~~g~~~aD~allVVda~~  159 (447)
T PLN03127        140 NMITGAAQMDGGILVVSAPD  159 (447)
T ss_pred             HHHHHHhhCCEEEEEEECCC
Confidence                        88888765

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=97.16  E-value=0.0021  Score=45.53  Aligned_cols=80  Identities=14%  Similarity=0.181  Sum_probs=53.0

Q ss_pred             cccceeeeEeccCCCcceeeeeccccCcCCCC----------CCCccceEEEE--EecC--cEEEEEEeeCCCCccceEE
Q psy2967          12 DMIPTVGFNMRKITKGNVTIWPVPLSGQFSQD----------MIPTVGFNMRK--ITKG--NVTIKVWDIGGQPRFRSIY   77 (101)
Q Consensus        12 ~~~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~----------~~~t~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~i~   77 (101)
                      .-++.--+++|++|.|||||++.+++.....+          ..||+.+....  +..+  .+.+.+.||+|-..+    
T Consensus        20 ~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~----   95 (373)
T COG5019          20 KGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDF----   95 (373)
T ss_pred             cCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccc----
Confidence            34666677789999999999999987533222          33555444433  3333  477888999986542    


Q ss_pred             EEECCChhhHHHHHHHHHHHH
Q psy2967          78 MVDAADTDKLEASRNELHALI   98 (101)
Q Consensus        78 v~d~~~~~sf~~~~~~~~~i~   98 (101)
                         +.|..+|+.+..++++..
T Consensus        96 ---idNs~~we~I~~yI~~q~  113 (373)
T COG5019          96 ---IDNSKCWEPIVDYIDDQF  113 (373)
T ss_pred             ---ccccccHHHHHHHHHHHH
Confidence               356677888777766543

>PRK00007 elongation factor G; Reviewed

Probab=97.16  E-value=0.00085  Score=51.20  Aligned_cols=64  Identities=20%  Similarity=0.147  Sum_probs=42.2

Q ss_pred             eccCCCcceeeeecccc--CcCCC------------------CCCCccceEEEEEecCcEEEEEEeeCCCCccce-----
Q psy2967          21 MRKITKGNVTIWPVPLS--GQFSQ------------------DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS-----   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~--~~~~~------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----   75 (101)
                      +|-+++|||||++++..  +....                  ...-|+......+..++..+.+.||+|+..|-.     
T Consensus        16 iG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~~ev~~a   95 (693)
T PRK00007         16 MAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFTIEVERS   95 (693)
T ss_pred             ECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHHHHHHHH
Confidence            59999999999999963  21110                  011122222233566788999999999876643     


Q ss_pred             -------EEEEECCCh
Q psy2967          76 -------IYMVDAADT   84 (101)
Q Consensus        76 -------i~v~d~~~~   84 (101)
                             |+|+|...-
T Consensus        96 l~~~D~~vlVvda~~g  111 (693)
T PRK00007         96 LRVLDGAVAVFDAVGG  111 (693)
T ss_pred             HHHcCEEEEEEECCCC
Confidence                   888897654

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.12  E-value=0.0011  Score=45.89  Aligned_cols=17  Identities=18%  Similarity=0.196  Sum_probs=15.7

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|.+|||||||+|++..
T Consensus       170 ~GqSGVGKSSLiN~L~p  186 (301)
T COG1162         170 LGQSGVGKSTLINALLP  186 (301)
T ss_pred             ECCCCCcHHHHHHhhCc
Confidence            58999999999999996

>KOG1424|consensus

Probab=97.09  E-value=0.00039  Score=51.08  Aligned_cols=54  Identities=19%  Similarity=0.210  Sum_probs=37.1

Q ss_pred             cceeeeEeccCCCcceeeeeccccCcCCCCCCCccce--EEEEEecCcEEEEEEeeCCC
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGF--NMRKITKGNVTIKVWDIGGQ   70 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~i~D~~G~   70 (101)
                      ..++|+ ||=|||||||++|.+++.+-+ ....|-|-  .+.++.. .-.+.+.|++|-
T Consensus       314 ~vtVG~-VGYPNVGKSSTINaLvG~KkV-sVS~TPGkTKHFQTi~l-s~~v~LCDCPGL  369 (562)
T KOG1424|consen  314 VVTVGF-VGYPNVGKSSTINALVGRKKV-SVSSTPGKTKHFQTIFL-SPSVCLCDCPGL  369 (562)
T ss_pred             eeEEEe-ecCCCCchhHHHHHHhcCcee-eeecCCCCcceeEEEEc-CCCceecCCCCc
Confidence            678885 799999999999999988765 44555442  2233322 223667899884

>PRK13796 GTPase YqeH; Provisional

Probab=97.09  E-value=0.00035  Score=49.52  Aligned_cols=20  Identities=10%  Similarity=0.111  Sum_probs=17.2

Q ss_pred             eEeccCCCcceeeeeccccC
Q psy2967          19 FNMRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~   38 (101)
                      +.||.+|||||||+|++...
T Consensus       164 ~vvG~~NvGKSTLiN~L~~~  183 (365)
T PRK13796        164 YVVGVTNVGKSTLINRIIKE  183 (365)
T ss_pred             EEEcCCCCcHHHHHHHHHhh
Confidence            44799999999999999853

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=96.98  E-value=0.00044  Score=48.92  Aligned_cols=20  Identities=10%  Similarity=0.120  Sum_probs=17.3

Q ss_pred             eEeccCCCcceeeeeccccC
Q psy2967          19 FNMRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~   38 (101)
                      +.||.+|||||||++++...
T Consensus       158 ~~vG~~nvGKStliN~l~~~  177 (360)
T TIGR03597       158 YVVGVTNVGKSSLINKLLKQ  177 (360)
T ss_pred             EEECCCCCCHHHHHHHHHhh
Confidence            44699999999999999874

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=96.91  E-value=0.0006  Score=46.83  Aligned_cols=20  Identities=15%  Similarity=0.072  Sum_probs=17.1

Q ss_pred             EeccCCCcceeeeeccccCc
Q psy2967          20 NMRKITKGNVTIWPVPLSGQ   39 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~   39 (101)
                      -+|.+|||||||++.+.+..
T Consensus       166 ~~G~sg~GKSTlin~l~~~~  185 (287)
T cd01854         166 LVGQSGVGKSTLINALLPDL  185 (287)
T ss_pred             EECCCCCCHHHHHHHHhchh
Confidence            36999999999999998754

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=96.90  E-value=0.0011  Score=47.13  Aligned_cols=58  Identities=14%  Similarity=0.137  Sum_probs=36.5

Q ss_pred             ceeeeEeccCCCcceeeeeccccCcCC-CCCC-CccceEE----EE----------Ee-cC---cEEEEEEeeCCCCcc
Q psy2967          15 PTVGFNMRKITKGNVTIWPVPLSGQFS-QDMI-PTVGFNM----RK----------IT-KG---NVTIKVWDIGGQPRF   73 (101)
Q Consensus        15 ~~~g~~vG~~~vGKtsl~~~~~~~~~~-~~~~-~t~~~~~----~~----------~~-~~---~~~~~i~D~~G~~~~   73 (101)
                      ..+|+ ||.||||||||.+.++..+.. .+|+ .||..+.    ..          +. .+   ...+++.|.+|--+=
T Consensus         3 l~~GI-VGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G   80 (372)
T COG0012           3 LKIGI-VGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG   80 (372)
T ss_pred             ceeEE-ecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence            45565 699999999999999987632 2332 3444332    10          11 11   267889999986543

>KOG3887|consensus

Probab=96.89  E-value=0.0024  Score=43.41  Aligned_cols=63  Identities=25%  Similarity=0.415  Sum_probs=38.5

Q ss_pred             eccCCCcceeeeeccccCcCCCC---CCCccceEEEEEecCcEEEEEEeeCCCCccce---------------EEEEECC
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQD---MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS---------------IYMVDAA   82 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------------i~v~d~~   82 (101)
                      +|-+.+||||+-+-..++-.+.+   .++|.......+.+.=+.+++||.+||-.+-.               |||.|..
T Consensus        33 MG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQ  112 (347)
T KOG3887|consen   33 MGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQ  112 (347)
T ss_pred             EeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEEEEech
Confidence            57779999999776654422211   11222222222444457899999999965433               8888866


Q ss_pred             C
Q psy2967          83 D   83 (101)
Q Consensus        83 ~   83 (101)
                      +
T Consensus       113 d  113 (347)
T KOG3887|consen  113 D  113 (347)
T ss_pred             H
Confidence            4

>cd01882 BMS1 Bms1

Probab=96.86  E-value=0.0018  Score=42.95  Aligned_cols=69  Identities=13%  Similarity=0.103  Sum_probs=39.8

Q ss_pred             ceeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCc-----cce----EEEEECCCh
Q psy2967          15 PTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPR-----FRS----IYMVDAADT   84 (101)
Q Consensus        15 ~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~-----~~~----i~v~d~~~~   84 (101)
                      |.+-..+|.+|+|||+|++.+....-........|. +......+..+.+.|++|.-.     .+.    ++++|.+..
T Consensus        39 ~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~~~~l~~ak~aDvVllviDa~~~  116 (225)
T cd01882          39 PLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDINAMIDIAKVADLVLLLIDASFG  116 (225)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchHHHHHHHHHhcCEEEEEEecCcC
Confidence            333334699999999999888754212111122221 122334667788999998531     000    778887654

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PRK00098 GTPase RsgA; Reviewed

Probab=96.81  E-value=0.00094  Score=46.09  Aligned_cols=19  Identities=11%  Similarity=0.017  Sum_probs=16.6

Q ss_pred             eccCCCcceeeeeccccCc
Q psy2967          21 MRKITKGNVTIWPVPLSGQ   39 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~   39 (101)
                      +|.+|||||||++.+....
T Consensus       170 ~G~sgvGKStlin~l~~~~  188 (298)
T PRK00098        170 AGQSGVGKSTLLNALAPDL  188 (298)
T ss_pred             ECCCCCCHHHHHHHHhCCc
Confidence            6999999999999998643

>COG2262 HflX GTPases [General function prediction only]

Probab=96.80  E-value=0.0045  Score=44.46  Aligned_cols=77  Identities=25%  Similarity=0.345  Sum_probs=48.9

Q ss_pred             ccceeeeEeccCCCcceeeeeccccCcCC--CCCCCccceEEEEEecC-cEEEEEEeeCCCC---------ccce-----
Q psy2967          13 MIPTVGFNMRKITKGNVTIWPVPLSGQFS--QDMIPTVGFNMRKITKG-NVTIKVWDIGGQP---------RFRS-----   75 (101)
Q Consensus        13 ~~~~~g~~vG~~~vGKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~-~~~~~i~D~~G~~---------~~~~-----   75 (101)
                      -+|.+++ +|=.|+|||||+|++.+....  ...-.|.....+.+... +..+.+=||.|--         .|++     
T Consensus       191 ~~p~vaL-vGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~  269 (411)
T COG2262         191 GIPLVAL-VGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEV  269 (411)
T ss_pred             CCCeEEE-EeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHh
Confidence            3555554 455699999999999864322  12335555555555433 5677788998842         2222     


Q ss_pred             ------EEEEECCChhhHHHH
Q psy2967          76 ------IYMVDAADTDKLEAS   90 (101)
Q Consensus        76 ------i~v~d~~~~~sf~~~   90 (101)
                            +.|+|.+++..-+.+
T Consensus       270 ~~aDlllhVVDaSdp~~~~~~  290 (411)
T COG2262         270 KEADLLLHVVDASDPEILEKL  290 (411)
T ss_pred             hcCCEEEEEeecCChhHHHHH
Confidence                  779999999554444

>PRK14845 translation initiation factor IF-2; Provisional

Probab=96.69  E-value=0.0035  Score=49.90  Aligned_cols=66  Identities=18%  Similarity=0.212  Sum_probs=42.5

Q ss_pred             CcceeeeeccccCcCCCC----CCCccceEEEEEec----------------CcEEEEEEeeCCCCccce----------
Q psy2967          26 KGNVTIWPVPLSGQFSQD----MIPTVGFNMRKITK----------------GNVTIKVWDIGGQPRFRS----------   75 (101)
Q Consensus        26 vGKtsl~~~~~~~~~~~~----~~~t~~~~~~~~~~----------------~~~~~~i~D~~G~~~~~~----------   75 (101)
                      ++||||+..+.+......    ....+|.....++.                +.-.+.+|||+|++.|..          
T Consensus       472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD  551 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD  551 (1049)
T ss_pred             cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence            679999999987544321    22334543322211                011389999999998755          


Q ss_pred             --EEEEECCC---hhhHHHHH
Q psy2967          76 --IYMVDAAD---TDKLEASR   91 (101)
Q Consensus        76 --i~v~d~~~---~~sf~~~~   91 (101)
                        ++|+|+++   +++++.+.
T Consensus       552 ivlLVVDa~~Gi~~qT~e~I~  572 (1049)
T PRK14845        552 LAVLVVDINEGFKPQTIEAIN  572 (1049)
T ss_pred             EEEEEEECcccCCHhHHHHHH
Confidence              89999986   66666654

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=96.64  E-value=0.0059  Score=43.11  Aligned_cols=47  Identities=21%  Similarity=0.304  Sum_probs=29.9

Q ss_pred             eccCCCcceeeeeccccCcC-CCCC-----CCccceEEEEEecCcEEEEEEeeCCC
Q psy2967          21 MRKITKGNVTIWPVPLSGQF-SQDM-----IPTVGFNMRKITKGNVTIKVWDIGGQ   70 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~-~~~~-----~~t~~~~~~~~~~~~~~~~i~D~~G~   70 (101)
                      ||-|++|||||++.+..-+. ..+|     .|.+|+-.  + ...-.+.+=|.+|-
T Consensus       165 VG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~--~-~~~~sfv~ADIPGL  217 (369)
T COG0536         165 VGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVR--V-DGGESFVVADIPGL  217 (369)
T ss_pred             ccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEE--e-cCCCcEEEecCccc
Confidence            48899999999999886432 2233     34444322  1 34456777888875

>KOG1486|consensus

Probab=96.60  E-value=0.0056  Score=41.92  Aligned_cols=55  Identities=18%  Similarity=0.167  Sum_probs=33.4

Q ss_pred             cccceeeeEeccCCCcceeeeeccccCcCCC-CCCCccceEE-EEEecCcEEEEEEeeCCC
Q psy2967          12 DMIPTVGFNMRKITKGNVTIWPVPLSGQFSQ-DMIPTVGFNM-RKITKGNVTIKVWDIGGQ   70 (101)
Q Consensus        12 ~~~~~~g~~vG~~~vGKtsl~~~~~~~~~~~-~~~~t~~~~~-~~~~~~~~~~~i~D~~G~   70 (101)
                      ..+.++||    |.||||+|+..+....... .|+=|.-..+ -.+..++..+++.|.+|.
T Consensus        63 aRValIGf----PSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGI  119 (364)
T KOG1486|consen   63 ARVALIGF----PSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGI  119 (364)
T ss_pred             eEEEEecC----CCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCccc
Confidence            34555555    7999999999988543221 1211111001 125678899999999875

>KOG2655|consensus

Probab=96.55  E-value=0.0042  Score=44.13  Aligned_cols=73  Identities=15%  Similarity=0.108  Sum_probs=44.2

Q ss_pred             eeeEeccCCCcceeeeeccccCcCCCC---------CCCccceEEEE--Ee--cCcEEEEEEeeCCCCccceEEEEECCC
Q psy2967          17 VGFNMRKITKGNVTIWPVPLSGQFSQD---------MIPTVGFNMRK--IT--KGNVTIKVWDIGGQPRFRSIYMVDAAD   83 (101)
Q Consensus        17 ~g~~vG~~~vGKtsl~~~~~~~~~~~~---------~~~t~~~~~~~--~~--~~~~~~~i~D~~G~~~~~~i~v~d~~~   83 (101)
                      --+.+|++|.|||||++.++...+..+         ...|..+....  +.  +-.+.+.+.||+|-...       +.|
T Consensus        23 tlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~-------vdn   95 (366)
T KOG2655|consen   23 TLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDA-------VDN   95 (366)
T ss_pred             EEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccc-------ccc
Confidence            335569999999999999887654432         11233333322  33  33478889999986542       234


Q ss_pred             hhhHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHA   96 (101)
Q Consensus        84 ~~sf~~~~~~~~~   96 (101)
                      ..+|..+..++++
T Consensus        96 s~~w~pi~~yi~~  108 (366)
T KOG2655|consen   96 SNCWRPIVNYIDS  108 (366)
T ss_pred             cccchhhhHHHHH
Confidence            4556666555544

>KOG1491|consensus

Probab=96.52  E-value=0.0023  Score=45.12  Aligned_cols=60  Identities=18%  Similarity=0.206  Sum_probs=38.3

Q ss_pred             ceeeeEeccCCCcceeeeeccccCcCCC-CC-CCccceEEEE--------------Ee---cCcEEEEEEeeCCCCccce
Q psy2967          15 PTVGFNMRKITKGNVTIWPVPLSGQFSQ-DM-IPTVGFNMRK--------------IT---KGNVTIKVWDIGGQPRFRS   75 (101)
Q Consensus        15 ~~~g~~vG~~~vGKtsl~~~~~~~~~~~-~~-~~t~~~~~~~--------------~~---~~~~~~~i~D~~G~~~~~~   75 (101)
                      +.+|+ ||.|+||||||.+.+....... ++ -.||..+.-.              +.   .....++++|++|--+-.+
T Consensus        21 lkiGI-VGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs   99 (391)
T KOG1491|consen   21 LKIGI-VGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGAS   99 (391)
T ss_pred             ceeeE-eeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcc
Confidence            46665 6999999999999999765432 22 2444433211              11   1247899999998754333

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=96.45  E-value=0.0015  Score=50.89  Aligned_cols=28  Identities=25%  Similarity=0.353  Sum_probs=22.7

Q ss_pred             CcEEEEEEeeCCCCccce------------EEEEECCChh
Q psy2967          58 GNVTIKVWDIGGQPRFRS------------IYMVDAADTD   85 (101)
Q Consensus        58 ~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~   85 (101)
                      ++..+.+.||+|+..|-.            |+|+|..+--
T Consensus        96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv  135 (843)
T PLN00116         96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV  135 (843)
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCC
Confidence            367889999999988755            8999987653

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=96.33  E-value=0.00088  Score=42.97  Aligned_cols=23  Identities=22%  Similarity=0.299  Sum_probs=18.6

Q ss_pred             ccceeeeEeccCCCcceeeeeccc
Q psy2967          13 MIPTVGFNMRKITKGNVTIWPVPL   36 (101)
Q Consensus        13 ~~~~~g~~vG~~~vGKtsl~~~~~   36 (101)
                      +.|++++ +|.+|+|||||+.++.
T Consensus         5 ~~~ii~i-vG~sgsGKTTLi~~li   27 (173)
T PRK10751          5 MIPLLAI-AAWSGTGKTTLLKKLI   27 (173)
T ss_pred             CceEEEE-ECCCCChHHHHHHHHH
Confidence            4666665 6999999999988876

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=96.29  E-value=0.0083  Score=44.25  Aligned_cols=39  Identities=18%  Similarity=0.246  Sum_probs=28.8

Q ss_pred             ecCcEEEEEEeeCCCCccce------------EEEEECCChhhHHHHHHHH
Q psy2967          56 TKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNEL   94 (101)
Q Consensus        56 ~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf~~~~~~~   94 (101)
                      +++.+.+++.||+|+-.|..            ++++|.+.--.-+.+.+.+
T Consensus        72 ~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~Y  122 (603)
T COG0481          72 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY  122 (603)
T ss_pred             CCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHH
Confidence            35679999999999988766            9999998754444443333

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=96.14  E-value=0.0012  Score=40.09  Aligned_cols=18  Identities=11%  Similarity=-0.110  Sum_probs=15.8

Q ss_pred             eEeccCCCcceeeeeccc
Q psy2967          19 FNMRKITKGNVTIWPVPL   36 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~   36 (101)
                      +.+|++|+||||+++++.
T Consensus         3 i~~G~pgsGKSt~a~~l~   20 (143)
T PF13671_consen    3 ILCGPPGSGKSTLAKRLA   20 (143)
T ss_dssp             EEEESTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            346999999999999987

...

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=96.09  E-value=0.019  Score=42.48  Aligned_cols=71  Identities=20%  Similarity=0.244  Sum_probs=47.9

Q ss_pred             EeccCCCcceeeeeccccCcCCC----CCCCccceEEEEEec-CcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQ----DMIPTVGFNMRKITK-GNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~----~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      .+|--.-|||||+..+.......    .+...+|......+. +.-.+.+.||+|++.|..            +||+|..
T Consensus        10 imGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~d   89 (509)
T COG0532          10 IMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAAD   89 (509)
T ss_pred             EeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEcc
Confidence            46777999999999988754432    122334443333321 456889999999998877            8899887


Q ss_pred             C---hhhHHHH
Q psy2967          83 D---TDKLEAS   90 (101)
Q Consensus        83 ~---~~sf~~~   90 (101)
                      |   +++.+.+
T Consensus        90 DGv~pQTiEAI  100 (509)
T COG0532          90 DGVMPQTIEAI  100 (509)
T ss_pred             CCcchhHHHHH
Confidence            6   4555444

>KOG1490|consensus

Probab=96.06  E-value=0.012  Score=43.66  Aligned_cols=52  Identities=10%  Similarity=-0.087  Sum_probs=35.7

Q ss_pred             EeccCCCcceeeeeccccCcCCC-CCC-CccceEEEEEecCcEEEEEEeeCCCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQ-DMI-PTVGFNMRKITKGNVTIKVWDIGGQP   71 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~-~~~-~t~~~~~~~~~~~~~~~~i~D~~G~~   71 (101)
                      .+|-|+||||||++.....+..- .|. +|-+.....++.+-...++-||+|--
T Consensus       173 lcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGIL  226 (620)
T KOG1490|consen  173 VCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGIL  226 (620)
T ss_pred             EecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCcccc
Confidence            35999999999999988765432 222 33334444466677788888998864

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=96.05  E-value=0.0018  Score=41.05  Aligned_cols=23  Identities=13%  Similarity=0.229  Sum_probs=18.8

Q ss_pred             cceeeeEeccCCCcceeeeecccc
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      ++++++ +|..++|||||+.+++.
T Consensus         2 ~~Il~i-vG~k~SGKTTLie~lv~   24 (161)
T COG1763           2 MKILGI-VGYKNSGKTTLIEKLVR   24 (161)
T ss_pred             CcEEEE-EecCCCChhhHHHHHHH
Confidence            566775 68899999999999864

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=95.96  E-value=0.0014  Score=38.81  Aligned_cols=19  Identities=11%  Similarity=-0.139  Sum_probs=16.2

Q ss_pred             EeccCCCcceeeeeccccC
Q psy2967          20 NMRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~   38 (101)
                      ..|.+||||||+.+++...
T Consensus         4 I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    4 ISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEESTTSSHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHH
Confidence            3599999999999998763

...

>PTZ00416 elongation factor 2; Provisional

Probab=95.92  E-value=0.0055  Score=47.85  Aligned_cols=26  Identities=27%  Similarity=0.415  Sum_probs=21.4

Q ss_pred             cEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          59 NVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        59 ~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      +..+.+.||+|+..|..            |+|+|..+.
T Consensus        91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g  128 (836)
T PTZ00416         91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEG  128 (836)
T ss_pred             ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCC
Confidence            67899999999987755            889998764

>TIGR00092 GTP-binding protein YchF

Probab=95.86  E-value=0.0074  Score=43.03  Aligned_cols=20  Identities=10%  Similarity=-0.016  Sum_probs=17.7

Q ss_pred             eccCCCcceeeeeccccCcC
Q psy2967          21 MRKITKGNVTIWPVPLSGQF   40 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~   40 (101)
                      ||.|++|||||.+.+.....
T Consensus         8 vGlPn~GKSTlfnaLT~~~~   27 (368)
T TIGR00092         8 VGLPNVGKSTLFAATTNLLG   27 (368)
T ss_pred             ECCCCCChHHHHHHHhCCCc
Confidence            69999999999999997654

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=95.85  E-value=0.0043  Score=38.63  Aligned_cols=21  Identities=14%  Similarity=0.216  Sum_probs=17.8

Q ss_pred             EeccCCCcceeeeeccccCcC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQF   40 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~   40 (101)
                      .+|..++|||||++.+++.+.
T Consensus         3 v~G~~ssGKSTliNaLlG~~i   23 (168)
T PF00350_consen    3 VVGQFSSGKSTLINALLGRPI   23 (168)
T ss_dssp             EEEBTTSSHHHHHHHHHTSS-
T ss_pred             EEcCCCCCHHHHHHHHHhccc
Confidence            368899999999999998763

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>TIGR00235 udk uridine kinase

Probab=95.81  E-value=0.0016  Score=42.40  Aligned_cols=17  Identities=12%  Similarity=-0.076  Sum_probs=14.6

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|++|+|||||++.+..
T Consensus        12 ~G~sGsGKSTl~~~l~~   28 (207)
T TIGR00235        12 GGGSGSGKTTVARKIYE   28 (207)
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999988763

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>KOG0075|consensus

Probab=95.78  E-value=0.0095  Score=37.57  Aligned_cols=39  Identities=62%  Similarity=0.851  Sum_probs=31.3

Q ss_pred             ccccccccccccceeeeEeccCCCcceeeeeccccCcCC
Q psy2967           3 LTLSGQFSQDMIPTVGFNMRKITKGNVTIWPVPLSGQFS   41 (101)
Q Consensus         3 ~~~~~~~~~~~~~~~g~~vG~~~vGKtsl~~~~~~~~~~   41 (101)
                      ...+|+++++++|++|+++-.-.-|--|+...-++|+..
T Consensus        39 ~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~r   77 (186)
T KOG0075|consen   39 VIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR   77 (186)
T ss_pred             EEeeccchhhhcccccceeEEeccCceEEEEEecCCCcc
Confidence            356788999999999999988888888887777766543

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=95.74  E-value=0.0024  Score=40.69  Aligned_cols=45  Identities=13%  Similarity=0.246  Sum_probs=25.9

Q ss_pred             ccCCCcceeeeeccccCcCCCCCCCccceEEEEEe--cCcEEEEEEee
Q psy2967          22 RKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKIT--KGNVTIKVWDI   67 (101)
Q Consensus        22 G~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~i~D~   67 (101)
                      |++|+|||||+++++..- .+...+.-|+....+.  +..+-+.+.|.
T Consensus         6 G~pG~GKTTll~k~i~~l-~~~~~~v~Gf~t~evr~~g~r~GF~iv~l   52 (168)
T PF03266_consen    6 GPPGVGKTTLLKKVIEEL-KKKGLPVGGFYTEEVRENGRRIGFDIVDL   52 (168)
T ss_dssp             S-TTSSHHHHHHHHHHHH-HHTCGGEEEEEEEEEETTSSEEEEEEEET
T ss_pred             CcCCCCHHHHHHHHHHHh-hccCCccceEEeecccCCCceEEEEEEEC
Confidence            999999999999987421 1112233455544433  33455666665

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=95.72  E-value=0.0024  Score=40.51  Aligned_cols=22  Identities=9%  Similarity=-0.100  Sum_probs=17.5

Q ss_pred             cceeeeEeccCCCcceeeeeccc
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPL   36 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~   36 (101)
                      +|++.+ +|.+||||||+++++.
T Consensus         3 ~~ii~i-~G~~GsGKsTl~~~l~   24 (188)
T TIGR01360         3 CKIIFI-VGGPGSGKGTQCEKIV   24 (188)
T ss_pred             CcEEEE-ECCCCCCHHHHHHHHH
Confidence            455554 6999999999998876

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=95.69  E-value=0.0066  Score=44.22  Aligned_cols=18  Identities=11%  Similarity=0.069  Sum_probs=16.4

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.++|||||+++|++.
T Consensus        23 vGpvrtGKSTfIn~fm~q   40 (492)
T TIGR02836        23 VGPVRTGKSTFIKKFMEL   40 (492)
T ss_pred             EcCCCCChHHHHHHHHhh
Confidence            588899999999999976

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>KOG3859|consensus

Probab=95.66  E-value=0.0085  Score=41.58  Aligned_cols=53  Identities=13%  Similarity=0.216  Sum_probs=36.7

Q ss_pred             eeEeccCCCcceeeeeccccCcCCCCCC----CccceEEEE--Ee--cCcEEEEEEeeCCC
Q psy2967          18 GFNMRKITKGNVTIWPVPLSGQFSQDMI----PTVGFNMRK--IT--KGNVTIKVWDIGGQ   70 (101)
Q Consensus        18 g~~vG~~~vGKtsl~~~~~~~~~~~~~~----~t~~~~~~~--~~--~~~~~~~i~D~~G~   70 (101)
                      -++||..|.|||+|+..+.+..|.....    |++.....+  +.  +-.+++.|.||.|-
T Consensus        45 ilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGf  105 (406)
T KOG3859|consen   45 ILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGF  105 (406)
T ss_pred             EEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeeccc
Confidence            3567999999999999999877765432    343333222  22  44578899999874

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=95.62  E-value=0.0022  Score=38.29  Aligned_cols=21  Identities=10%  Similarity=-0.157  Sum_probs=16.7

Q ss_pred             eeEeccCCCcceeeeeccccC
Q psy2967          18 GFNMRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        18 g~~vG~~~vGKtsl~~~~~~~   38 (101)
                      .+..|++|+|||++++++...
T Consensus         7 ~~i~G~~G~GKT~~~~~~~~~   27 (131)
T PF13401_consen    7 LVISGPPGSGKTTLIKRLARQ   27 (131)
T ss_dssp             EEEEE-TTSSHHHHHHHHHHH
T ss_pred             cEEEcCCCCCHHHHHHHHHHH
Confidence            445699999999999999864

>PRK07560 elongation factor EF-2; Reviewed

Probab=95.60  E-value=0.007  Score=46.59  Aligned_cols=70  Identities=26%  Similarity=0.346  Sum_probs=42.7

Q ss_pred             cceeeeEeccCCCcceeeeeccccCc--CCC---------CCC-------CccceEEE----EEecCcEEEEEEeeCCCC
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLSGQ--FSQ---------DMI-------PTVGFNMR----KITKGNVTIKVWDIGGQP   71 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~~~--~~~---------~~~-------~t~~~~~~----~~~~~~~~~~i~D~~G~~   71 (101)
                      +.-+++ +|..++|||||+.+++...  ...         ++.       -|+.....    ....++..+.+.||+|+.
T Consensus        20 iRni~i-igh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~   98 (731)
T PRK07560         20 IRNIGI-IAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV   98 (731)
T ss_pred             ccEEEE-EEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence            334442 5999999999999987421  110         000       11111111    123357889999999998


Q ss_pred             ccce------------EEEEECCCh
Q psy2967          72 RFRS------------IYMVDAADT   84 (101)
Q Consensus        72 ~~~~------------i~v~d~~~~   84 (101)
                      .|..            |+|+|....
T Consensus        99 df~~~~~~~l~~~D~avlVvda~~g  123 (731)
T PRK07560         99 DFGGDVTRAMRAVDGAIVVVDAVEG  123 (731)
T ss_pred             ChHHHHHHHHHhcCEEEEEEECCCC
Confidence            8755            889997764

>PRK14738 gmk guanylate kinase; Provisional

Probab=95.56  E-value=0.004  Score=40.72  Aligned_cols=28  Identities=7%  Similarity=-0.082  Sum_probs=21.0

Q ss_pred             ccccceeeeEeccCCCcceeeeeccccC
Q psy2967          11 QDMIPTVGFNMRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        11 ~~~~~~~g~~vG~~~vGKtsl~~~~~~~   38 (101)
                      ++.-+.+-+.+|++|||||||++++...
T Consensus         9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738          9 KPAKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            3445555555799999999999988753

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.55  E-value=0.0021  Score=43.38  Aligned_cols=17  Identities=12%  Similarity=0.081  Sum_probs=14.8

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|++|||||||++-+.+
T Consensus        35 lGpSGcGKSTLLriiAG   51 (248)
T COG1116          35 LGPSGCGKSTLLRLIAG   51 (248)
T ss_pred             ECCCCCCHHHHHHHHhC
Confidence            48889999999998775

>PRK08118 topology modulation protein; Reviewed

Probab=95.53  E-value=0.0026  Score=40.31  Aligned_cols=19  Identities=11%  Similarity=-0.115  Sum_probs=16.0

Q ss_pred             eEeccCCCcceeeeecccc
Q psy2967          19 FNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~   37 (101)
                      +.+|++|+|||||.+++..
T Consensus         5 ~I~G~~GsGKSTlak~L~~   23 (167)
T PRK08118          5 ILIGSGGSGKSTLARQLGE   23 (167)
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            3469999999999998775

>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []

Probab=95.53  E-value=0.0063  Score=42.60  Aligned_cols=37  Identities=22%  Similarity=0.200  Sum_probs=29.8

Q ss_pred             cccceeeeEeccCCCcceeeeeccccCcCCCCCCCcc
Q psy2967          12 DMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTV   48 (101)
Q Consensus        12 ~~~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~   48 (101)
                      ..-|+++.+.|+.|+|||-|++-++..+..+-...|+
T Consensus        84 ~~qP~I~~VYGPTG~GKSqLlRNLis~~lI~P~PETV  120 (369)
T PF02456_consen   84 GLQPFIGVVYGPTGSGKSQLLRNLISCQLIQPPPETV  120 (369)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHhhhcCcccCCCCce
Confidence            4468999999999999999999999887765444443

During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=95.51  E-value=0.011  Score=43.22  Aligned_cols=54  Identities=15%  Similarity=0.288  Sum_probs=35.5

Q ss_pred             ccCCCcceeeeecccc--CcCCC------------------CCCCccceEEE----EEecCcEEEEEEeeCCCCccce
Q psy2967          22 RKITKGNVTIWPVPLS--GQFSQ------------------DMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRS   75 (101)
Q Consensus        22 G~~~vGKtsl~~~~~~--~~~~~------------------~~~~t~~~~~~----~~~~~~~~~~i~D~~G~~~~~~   75 (101)
                      --|.+|||||..++.-  +....                  +.+...|+++.    ..++++..+++.||+|++.|..
T Consensus        19 SHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeDFSE   96 (528)
T COG4108          19 SHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHEDFSE   96 (528)
T ss_pred             ecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccccch
Confidence            4578999999887542  21110                  01122233332    3578899999999999999877

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.49  E-value=0.0024  Score=42.64  Aligned_cols=16  Identities=13%  Similarity=0.003  Sum_probs=13.6

Q ss_pred             eccCCCcceeeeeccc
Q psy2967          21 MRKITKGNVTIWPVPL   36 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~   36 (101)
                      +|++|||||||++.+-
T Consensus        39 IGPSGcGKST~LR~lN   54 (253)
T COG1117          39 IGPSGCGKSTLLRCLN   54 (253)
T ss_pred             ECCCCcCHHHHHHHHH
Confidence            4999999999987654

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=95.49  E-value=0.0027  Score=39.27  Aligned_cols=18  Identities=11%  Similarity=0.113  Sum_probs=15.1

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      .+|..++|||||+..++.
T Consensus         5 VvG~~~sGKTTl~~~Li~   22 (140)
T PF03205_consen    5 VVGPKNSGKTTLIRKLIN   22 (140)
T ss_dssp             EEESTTSSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            368899999999988764

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=95.48  E-value=0.0032  Score=41.09  Aligned_cols=24  Identities=17%  Similarity=0.238  Sum_probs=19.6

Q ss_pred             ccceeeeEeccCCCcceeeeecccc
Q psy2967          13 MIPTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        13 ~~~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      .+|.+++ +|..|+|||||++++..
T Consensus        21 ~~~~i~~-~G~~gsGKTTli~~l~~   44 (207)
T TIGR00073        21 GLVVLNF-MSSPGSGKTTLIEKLID   44 (207)
T ss_pred             CcEEEEE-ECCCCCCHHHHHHHHHH
Confidence            4677775 69999999999988764

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=95.46  E-value=0.0026  Score=41.05  Aligned_cols=17  Identities=12%  Similarity=0.038  Sum_probs=14.7

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|++|||||||++.+..
T Consensus         5 ~G~~GsGKSTl~~~l~~   21 (198)
T cd02023           5 AGGSGSGKTTVAEEIIE   21 (198)
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999988754

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=95.45  E-value=0.002  Score=43.24  Aligned_cols=17  Identities=12%  Similarity=0.020  Sum_probs=15.1

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|++|+||||+.+.+.+
T Consensus         2 iGpaGSGKTT~~~~~~~   18 (238)
T PF03029_consen    2 IGPAGSGKTTFCKGLSE   18 (238)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHH
Confidence            69999999999988764

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG1532|consensus

Probab=95.42  E-value=0.0038  Score=43.18  Aligned_cols=24  Identities=17%  Similarity=0.080  Sum_probs=20.3

Q ss_pred             cceeeeEeccCCCcceeeeecccc
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      -|+.-+++|..|+|||||++|+..
T Consensus        18 ~p~~ilVvGMAGSGKTTF~QrL~~   41 (366)
T KOG1532|consen   18 RPVIILVVGMAGSGKTTFMQRLNS   41 (366)
T ss_pred             CCcEEEEEecCCCCchhHHHHHHH
Confidence            466777788899999999999875

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=95.36  E-value=0.0036  Score=40.41  Aligned_cols=17  Identities=12%  Similarity=-0.035  Sum_probs=14.4

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|++|||||||.+++..
T Consensus         5 ~G~sgSGKTTla~~L~~   21 (194)
T PF00485_consen    5 AGPSGSGKTTLAKRLAQ   21 (194)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999987653

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>KOG1547|consensus

Probab=95.29  E-value=0.046  Score=37.31  Aligned_cols=72  Identities=13%  Similarity=0.113  Sum_probs=41.8

Q ss_pred             eEeccCCCcceeeeeccccCcCCCC---------CCCccceEEE--EEecC--cEEEEEEeeCCCCccceEEEEECCChh
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQD---------MIPTVGFNMR--KITKG--NVTIKVWDIGGQPRFRSIYMVDAADTD   85 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~---------~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~i~v~d~~~~~   85 (101)
                      ++||.+|.|||||++.+........         +..|+.....  .+..+  ..++.+.||+|-...       +.|..
T Consensus        50 MVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDq-------InN~n  122 (336)
T KOG1547|consen   50 MVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQ-------INNDN  122 (336)
T ss_pred             EEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccc-------cCccc
Confidence            3459999999999998775433221         2223222221  23334  467778999985432       24445


Q ss_pred             hHHHHHHHHHHH
Q psy2967          86 KLEASRNELHAL   97 (101)
Q Consensus        86 sf~~~~~~~~~i   97 (101)
                      -++-+.+++++.
T Consensus       123 cWePI~kyIneQ  134 (336)
T KOG1547|consen  123 CWEPIEKYINEQ  134 (336)
T ss_pred             hhHHHHHHHHHH
Confidence            566665555543

>KOG4273|consensus

Probab=95.27  E-value=0.034  Score=38.16  Aligned_cols=77  Identities=12%  Similarity=0.132  Sum_probs=48.1

Q ss_pred             eEeccCCC--cceeeeeccccCcCCCCCCCccceEEE--EEecC----cEEEEEEeeCCCCccce----------EEEEE
Q psy2967          19 FNMRKITK--GNVTIWPVPLSGQFSQDMIPTVGFNMR--KITKG----NVTIKVWDIGGQPRFRS----------IYMVD   80 (101)
Q Consensus        19 ~~vG~~~v--GKtsl~~~~~~~~~~~~~~~t~~~~~~--~~~~~----~~~~~i~D~~G~~~~~~----------i~v~d   80 (101)
                      +++|.+||  ||-.|+.|+...+|.......-...+.  +++.+    .+.+.|--.+.......          +.+||
T Consensus         8 lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~vmvfd   87 (418)
T KOG4273|consen    8 LVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFVMVFD   87 (418)
T ss_pred             EEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEEEEEe
Confidence            34577798  999999999988877654433333322  23332    23333333222111111          88999


Q ss_pred             CCChhhHHHHHHHHH
Q psy2967          81 AADTDKLEASRNELH   95 (101)
Q Consensus        81 ~~~~~sf~~~~~~~~   95 (101)
                      ++....+..++.|+.
T Consensus        88 lse~s~l~alqdwl~  102 (418)
T KOG4273|consen   88 LSEKSGLDALQDWLP  102 (418)
T ss_pred             ccchhhhHHHHhhcc
Confidence            999999999999986

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=95.26  E-value=0.0033  Score=41.99  Aligned_cols=19  Identities=11%  Similarity=-0.010  Sum_probs=15.9

Q ss_pred             eccCCCcceeeeeccccCc
Q psy2967          21 MRKITKGNVTIWPVPLSGQ   39 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~   39 (101)
                      +|++|||||||++-+..-+
T Consensus        37 ~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          37 VGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             ECCCCCCHHHHHHHHhccc
Confidence            3899999999999887543

>smart00053 DYNc Dynamin, GTPase

Probab=95.25  E-value=0.071  Score=35.94  Aligned_cols=28  Identities=11%  Similarity=0.220  Sum_probs=21.6

Q ss_pred             ccceeeeEeccCCCcceeeeeccccCcCC
Q psy2967          13 MIPTVGFNMRKITKGNVTIWPVPLSGQFS   41 (101)
Q Consensus        13 ~~~~~g~~vG~~~vGKtsl~~~~~~~~~~   41 (101)
                      ..|.+. .+|+.++||||+++.+.+..+.
T Consensus        25 ~~p~i~-vvG~~~~GKSt~l~~i~g~~~~   52 (240)
T smart00053       25 DLPQIA-VVGGQSAGKSSVLENFVGRDFL   52 (240)
T ss_pred             CCCeEE-EEcCCCccHHHHHHHHhCCCcc
Confidence            455444 4799999999999999986633

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=95.24  E-value=0.0034  Score=39.51  Aligned_cols=23  Identities=13%  Similarity=0.133  Sum_probs=14.7

Q ss_pred             ceeeeEeccCCCcceeeeecccc
Q psy2967          15 PTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        15 ~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      +..-+..|++|+|||+|++++..
T Consensus        24 ~~~~ll~G~~G~GKT~ll~~~~~   46 (185)
T PF13191_consen   24 PRNLLLTGESGSGKTSLLRALLD   46 (185)
T ss_dssp             ---EEE-B-TTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34444569999999999997664

>PRK06762 hypothetical protein; Provisional

Probab=95.20  E-value=0.0054  Score=38.38  Aligned_cols=23  Identities=17%  Similarity=-0.028  Sum_probs=17.5

Q ss_pred             ceeeeEeccCCCcceeeeecccc
Q psy2967          15 PTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        15 ~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      |++-.-.|.+|+||||+.+.+..
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~   24 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQE   24 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            44444569999999999987764

>PRK07261 topology modulation protein; Provisional

Probab=95.18  E-value=0.004  Score=39.56  Aligned_cols=18  Identities=11%  Similarity=-0.088  Sum_probs=15.3

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      .+|.+|+|||||...+..
T Consensus         5 i~G~~GsGKSTla~~l~~   22 (171)
T PRK07261          5 IIGYSGSGKSTLARKLSQ   22 (171)
T ss_pred             EEcCCCCCHHHHHHHHHH
Confidence            468899999999998764

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=95.12  E-value=0.0039  Score=43.10  Aligned_cols=24  Identities=13%  Similarity=0.133  Sum_probs=17.8

Q ss_pred             ccceeeeEeccCCCcceeeeecccc
Q psy2967          13 MIPTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        13 ~~~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      .+.++++ +|.+|+|||||+++++.
T Consensus       103 ~~~~v~l-~G~pGsGKTTLl~~l~~  126 (290)
T PRK10463        103 KQLVLNL-VSSPGSGKTTLLTETLM  126 (290)
T ss_pred             CCeEEEE-ECCCCCCHHHHHHHHHH
Confidence            3455554 59999999999976654

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=95.11  E-value=0.0049  Score=43.47  Aligned_cols=18  Identities=11%  Similarity=-0.008  Sum_probs=15.5

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|++|||||||++-+.+-
T Consensus        35 lGPSGcGKSTlLr~IAGL   52 (338)
T COG3839          35 LGPSGCGKSTLLRMIAGL   52 (338)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            389999999999988763

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=95.11  E-value=0.0035  Score=37.25  Aligned_cols=18  Identities=11%  Similarity=-0.099  Sum_probs=15.8

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      .|++|+|||++++.+...
T Consensus         4 ~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    4 HGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             ESSTTSSHHHHHHHHHHH
T ss_pred             ECcCCCCeeHHHHHHHhh
Confidence            599999999999998854

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PF05729 NACHT: NACHT domain

Probab=95.11  E-value=0.0043  Score=38.19  Aligned_cols=18  Identities=11%  Similarity=-0.043  Sum_probs=15.7

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      ..|++|+|||+++.+++.
T Consensus         5 I~G~~G~GKStll~~~~~   22 (166)
T PF05729_consen    5 ISGEPGSGKSTLLRKLAQ   22 (166)
T ss_pred             EECCCCCChHHHHHHHHH
Confidence            359999999999998885

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=95.11  E-value=0.01  Score=44.89  Aligned_cols=22  Identities=9%  Similarity=-0.046  Sum_probs=16.8

Q ss_pred             eeeeEeccCCCcceeeeecccc
Q psy2967          16 TVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        16 ~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      .+--+||+||+|||+|++.++.
T Consensus        70 fIvavvGPpGtGKsTLirSlVr   91 (1077)
T COG5192          70 FIVAVVGPPGTGKSTLIRSLVR   91 (1077)
T ss_pred             eEEEeecCCCCChhHHHHHHHH
Confidence            3334579999999999877663

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=95.10  E-value=0.0041  Score=36.54  Aligned_cols=22  Identities=9%  Similarity=-0.133  Sum_probs=17.4

Q ss_pred             EeccCCCcceeeeeccccCcCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFS   41 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~   41 (101)
                      -+|++|+|||+++..+...-..
T Consensus         7 l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        7 IVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             EECCCCCcHHHHHHHHHhccCC
Confidence            3599999999999998865433

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=95.10  E-value=0.0037  Score=41.37  Aligned_cols=19  Identities=21%  Similarity=0.254  Sum_probs=15.2

Q ss_pred             eeeEeccCCCcceeeeeccc
Q psy2967          17 VGFNMRKITKGNVTIWPVPL   36 (101)
Q Consensus        17 ~g~~vG~~~vGKtsl~~~~~   36 (101)
                      +|+ .|++|||||||++.+.
T Consensus         2 igI-~G~sGSGKTTla~~L~   20 (220)
T cd02025           2 IGI-AGSVAVGKSTTARVLQ   20 (220)
T ss_pred             EEe-eCCCCCCHHHHHHHHH
Confidence            444 4999999999998765

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK04040 adenylate kinase; Provisional

Probab=95.10  E-value=0.0052  Score=39.76  Aligned_cols=23  Identities=17%  Similarity=0.020  Sum_probs=17.9

Q ss_pred             ceeeeEeccCCCcceeeeecccc
Q psy2967          15 PTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        15 ~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      |.+.+..|.+|+||||+++.+..
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~   24 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALE   24 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHH
Confidence            44455579999999999988754

>KOG0462|consensus

Probab=95.06  E-value=0.044  Score=41.13  Aligned_cols=34  Identities=18%  Similarity=0.295  Sum_probs=26.1

Q ss_pred             cCcEEEEEEeeCCCCccce------------EEEEECCChhhHHHH
Q psy2967          57 KGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEAS   90 (101)
Q Consensus        57 ~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf~~~   90 (101)
                      ++++.+++.||+|+..|..            |+|+|.+.--.-+.+
T Consensus       122 ~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~  167 (650)
T KOG0462|consen  122 GQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTV  167 (650)
T ss_pred             CCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHH
Confidence            4569999999999998877            889998864333333

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=95.02  E-value=0.025  Score=41.79  Aligned_cols=51  Identities=20%  Similarity=0.337  Sum_probs=33.9

Q ss_pred             CCcceeeeecccc--CcCCCCCC------------CccceEEE----EEecCcEEEEEEeeCCCCccce
Q psy2967          25 TKGNVTIWPVPLS--GQFSQDMI------------PTVGFNMR----KITKGNVTIKVWDIGGQPRFRS   75 (101)
Q Consensus        25 ~vGKtsl~~~~~~--~~~~~~~~------------~t~~~~~~----~~~~~~~~~~i~D~~G~~~~~~   75 (101)
                      .=|||||+..+..  +.|.+...            --.|+.+.    .+.+++..++|.||+|+..|--
T Consensus        15 DHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG   83 (603)
T COG1217          15 DHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG   83 (603)
T ss_pred             cCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence            6699999999875  33443211            11122221    2678899999999999987754

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=95.01  E-value=0.0055  Score=38.73  Aligned_cols=17  Identities=12%  Similarity=0.128  Sum_probs=14.9

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|.+|+|||||+.++..
T Consensus         7 ~G~~gsGKTTli~~L~~   23 (159)
T cd03116           7 VGYSGSGKTTLLEKLIP   23 (159)
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            58899999999988774

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=94.97  E-value=0.0045  Score=39.83  Aligned_cols=20  Identities=10%  Similarity=-0.037  Sum_probs=17.1

Q ss_pred             eEeccCCCcceeeeeccccC
Q psy2967          19 FNMRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~   38 (101)
                      +.+|+||+||||+..++...
T Consensus         4 iilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           4 LILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             EEECCCCCCHHHHHHHHHHH
Confidence            34699999999999998865

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=94.95  E-value=0.0083  Score=46.00  Aligned_cols=21  Identities=10%  Similarity=0.093  Sum_probs=16.9

Q ss_pred             ceeeeEeccCCCcceeeeeccc
Q psy2967          15 PTVGFNMRKITKGNVTIWPVPL   36 (101)
Q Consensus        15 ~~~g~~vG~~~vGKtsl~~~~~   36 (101)
                      |++.+ ||+||||||||.+.+.
T Consensus       351 pILcL-VGPPGVGKTSLgkSIA  371 (782)
T COG0466         351 PILCL-VGPPGVGKTSLGKSIA  371 (782)
T ss_pred             cEEEE-ECCCCCCchhHHHHHH
Confidence            56555 6999999999987655

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=94.95  E-value=0.0045  Score=39.21  Aligned_cols=18  Identities=11%  Similarity=0.021  Sum_probs=15.2

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      .+|++|||||||++.+..
T Consensus         6 i~G~sGsGKttl~~~l~~   23 (179)
T TIGR02322         6 VVGPSGAGKDTLLDYARA   23 (179)
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            459999999999988754

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=94.94  E-value=0.096  Score=37.53  Aligned_cols=62  Identities=11%  Similarity=0.084  Sum_probs=39.9

Q ss_pred             cceeeeEeccCCCcceeeeeccccCc--CCC---------------------------------CCCCccceEEEEEecC
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLSGQ--FSQ---------------------------------DMIPTVGFNMRKITKG   58 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~~~--~~~---------------------------------~~~~t~~~~~~~~~~~   58 (101)
                      -+...+-+|.-.=|||||+-|+..+.  ..+                                 ++--||.+-|+.....
T Consensus         5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~   84 (431)
T COG2895           5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE   84 (431)
T ss_pred             cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence            34455557888889999999987631  000                                 0112233333344556


Q ss_pred             cEEEEEEeeCCCCccce
Q psy2967          59 NVTIKVWDIGGQPRFRS   75 (101)
Q Consensus        59 ~~~~~i~D~~G~~~~~~   75 (101)
                      .-+|.|-||+|++.|-.
T Consensus        85 KRkFIiADTPGHeQYTR  101 (431)
T COG2895          85 KRKFIIADTPGHEQYTR  101 (431)
T ss_pred             cceEEEecCCcHHHHhh
Confidence            78899999999998865

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=94.91  E-value=0.0043  Score=39.78  Aligned_cols=18  Identities=11%  Similarity=0.060  Sum_probs=15.5

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|++|+|||||++.+...
T Consensus         8 ~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          8 MGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             ECCCCCCHHHHHHHHhcc
Confidence            688999999999998653

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=94.90  E-value=0.011  Score=36.34  Aligned_cols=18  Identities=22%  Similarity=0.270  Sum_probs=15.9

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      .|+.|+|||+|++.+...
T Consensus        28 ~G~lGaGKTtl~~~l~~~   45 (133)
T TIGR00150        28 KGDLGAGKTTLVQGLLQG   45 (133)
T ss_pred             EcCCCCCHHHHHHHHHHH
Confidence            499999999999998864

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK14737 gmk guanylate kinase; Provisional

Probab=94.87  E-value=0.0069  Score=39.11  Aligned_cols=23  Identities=17%  Similarity=0.013  Sum_probs=18.2

Q ss_pred             eeeeEeccCCCcceeeeeccccC
Q psy2967          16 TVGFNMRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        16 ~~g~~vG~~~vGKtsl~~~~~~~   38 (101)
                      .+-+.+|++|||||+|++++...
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~   27 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEE   27 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            33344699999999999999764

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=94.82  E-value=0.0049  Score=36.60  Aligned_cols=19  Identities=11%  Similarity=-0.064  Sum_probs=16.3

Q ss_pred             EeccCCCcceeeeeccccC
Q psy2967          20 NMRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~   38 (101)
                      ..|++|+|||++++.+...
T Consensus        24 i~G~~G~GKT~l~~~i~~~   42 (151)
T cd00009          24 LYGPPGTGKTTLARAIANE   42 (151)
T ss_pred             EECCCCCCHHHHHHHHHHH
Confidence            3599999999999998854

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=94.81  E-value=0.0048  Score=37.22  Aligned_cols=18  Identities=11%  Similarity=-0.012  Sum_probs=15.1

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++.+.+.
T Consensus        17 ~G~nGsGKStLl~~l~g~   34 (137)
T PF00005_consen   17 VGPNGSGKSTLLKALAGL   34 (137)
T ss_dssp             EESTTSSHHHHHHHHTTS
T ss_pred             EccCCCccccceeeeccc
Confidence            477899999999988754

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=94.79  E-value=0.0074  Score=39.12  Aligned_cols=27  Identities=19%  Similarity=0.076  Sum_probs=19.9

Q ss_pred             ccccceeeeEeccCCCcceeeeecccc
Q psy2967          11 QDMIPTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        11 ~~~~~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      ...-|++-+..|.+|+|||+++..+..
T Consensus        11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~   37 (199)
T PF06414_consen   11 PQEKPTLIIIAGQPGSGKSTLARQLLE   37 (199)
T ss_dssp             --SS-EEEEEES-TTSTTHHHHHHHHH
T ss_pred             cccCCEEEEEeCCCCCCHHHHHHHhhh
Confidence            345788888889999999999988764

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>PF13173 AAA_14: AAA domain

Probab=94.79  E-value=0.004  Score=37.53  Aligned_cols=20  Identities=10%  Similarity=-0.004  Sum_probs=16.8

Q ss_pred             eccCCCcceeeeeccccCcC
Q psy2967          21 MRKITKGNVTIWPVPLSGQF   40 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~   40 (101)
                      .|+++||||++++++...-.
T Consensus         8 ~G~R~vGKTtll~~~~~~~~   27 (128)
T PF13173_consen    8 TGPRGVGKTTLLKQLAKDLL   27 (128)
T ss_pred             ECCCCCCHHHHHHHHHHHhc
Confidence            48999999999999986543

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=94.78  E-value=0.0068  Score=42.98  Aligned_cols=19  Identities=11%  Similarity=0.025  Sum_probs=15.9

Q ss_pred             eccCCCcceeeeeccccCc
Q psy2967          21 MRKITKGNVTIWPVPLSGQ   39 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~   39 (101)
                      +|++||||||+++.+.+=+
T Consensus        37 LGPSGcGKTTlLR~IAGfe   55 (352)
T COG3842          37 LGPSGCGKTTLLRMIAGFE   55 (352)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            3889999999999988543

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=94.75  E-value=0.0039  Score=33.77  Aligned_cols=18  Identities=11%  Similarity=-0.066  Sum_probs=15.6

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      .|.+|+|||++.+.+...
T Consensus         5 ~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           5 TGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999988744

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>KOG0468|consensus

Probab=94.75  E-value=0.062  Score=41.40  Aligned_cols=70  Identities=14%  Similarity=0.270  Sum_probs=46.5

Q ss_pred             eccCCCcceeeeeccccCcCCCC---------CCCc------cceEEEE---------EecCcEEEEEEeeCCCCccce-
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQD---------MIPT------VGFNMRK---------ITKGNVTIKVWDIGGQPRFRS-   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~~---------~~~t------~~~~~~~---------~~~~~~~~~i~D~~G~~~~~~-   75 (101)
                      +|.-..|||+|+.-+.....++-         |..+      .|+.++.         ..++.+.+++.||+|+-.|.. 
T Consensus       134 ~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF~DE  213 (971)
T KOG0468|consen  134 VGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNFSDE  213 (971)
T ss_pred             eeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCcccchHH
Confidence            48889999999988876433221         1111      1233321         246678999999999988766 


Q ss_pred             -----------EEEEECCChhhHHHH
Q psy2967          76 -----------IYMVDAADTDKLEAS   90 (101)
Q Consensus        76 -----------i~v~d~~~~~sf~~~   90 (101)
                                 ++++|+.+--.++.-
T Consensus       214 ~ta~l~~sDgvVlvvDv~EGVmlntE  239 (971)
T KOG0468|consen  214 TTASLRLSDGVVLVVDVAEGVMLNTE  239 (971)
T ss_pred             HHHHhhhcceEEEEEEcccCceeeHH
Confidence                       889998876655443

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=94.73  E-value=0.0053  Score=40.97  Aligned_cols=19  Identities=11%  Similarity=0.013  Sum_probs=15.5

Q ss_pred             eccCCCcceeeeeccccCc
Q psy2967          21 MRKITKGNVTIWPVPLSGQ   39 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~   39 (101)
                      +|++|+|||||++.+-.-+
T Consensus        34 iGpSGSGKSTlLRclN~LE   52 (240)
T COG1126          34 IGPSGSGKSTLLRCLNGLE   52 (240)
T ss_pred             ECCCCCCHHHHHHHHHCCc
Confidence            4889999999998876543

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=94.72  E-value=0.0056  Score=37.14  Aligned_cols=17  Identities=12%  Similarity=0.008  Sum_probs=15.2

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|++|+|||+|++.+..
T Consensus         5 ~G~~G~GKt~l~~~la~   21 (139)
T PF07728_consen    5 VGPPGTGKTTLARELAA   21 (139)
T ss_dssp             EESSSSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998774

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=94.68  E-value=0.0075  Score=39.98  Aligned_cols=17  Identities=12%  Similarity=0.100  Sum_probs=14.5

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|++|||||||++-..+
T Consensus        37 lGpSGcGKTTLLnl~AG   53 (259)
T COG4525          37 LGPSGCGKTTLLNLIAG   53 (259)
T ss_pred             EcCCCccHHHHHHHHhc
Confidence            48899999999988664

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=94.68  E-value=0.0058  Score=32.75  Aligned_cols=16  Identities=13%  Similarity=0.007  Sum_probs=13.7

Q ss_pred             eccCCCcceeeeeccc
Q psy2967          21 MRKITKGNVTIWPVPL   36 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~   36 (101)
                      .|+.|+|||||+..+.
T Consensus        29 ~G~nGsGKSTllDAi~   44 (62)
T PF13555_consen   29 TGPNGSGKSTLLDAIQ   44 (62)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            4999999999997755

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=94.67  E-value=0.0046  Score=36.57  Aligned_cols=18  Identities=17%  Similarity=-0.082  Sum_probs=15.3

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      .|.+||||||+++.+...
T Consensus         4 ~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    4 SGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EESTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            489999999999887754

...

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=94.66  E-value=0.028  Score=34.53  Aligned_cols=69  Identities=19%  Similarity=0.235  Sum_probs=33.6

Q ss_pred             ccCCCcceeeeeccccCcCCCCCCCccceEEEEEecC-------cEEEEEEeeCCC-Cccce------EEEEECCChhhH
Q psy2967          22 RKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKG-------NVTIKVWDIGGQ-PRFRS------IYMVDAADTDKL   87 (101)
Q Consensus        22 G~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~-------~~~~~i~D~~G~-~~~~~------i~v~d~~~~~sf   87 (101)
                      |.+|+|||++++.+...         ++..+.+++..       -.-+.+||-..+ -+++.      |+..|=-|+.+-
T Consensus         6 g~PG~GKT~la~~lA~~---------~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrapp   76 (131)
T PF07726_consen    6 GVPGVGKTTLAKALARS---------LGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAPP   76 (131)
T ss_dssp             S---HHHHHHHHHHHHH---------TT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-H
T ss_pred             CCCccHHHHHHHHHHHH---------cCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCCH
Confidence            88999999999887742         12222222211       022345553321 22233      888887777665


Q ss_pred             HHHHHHHHHHHH
Q psy2967          88 EASRNELHALIE   99 (101)
Q Consensus        88 ~~~~~~~~~i~~   99 (101)
                      ..-..+++.+.+
T Consensus        77 ktQsAlLeam~E   88 (131)
T PF07726_consen   77 KTQSALLEAMEE   88 (131)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc
Confidence            544455555544

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=94.62  E-value=0.0057  Score=39.58  Aligned_cols=20  Identities=5%  Similarity=-0.034  Sum_probs=16.6

Q ss_pred             EeccCCCcceeeeeccccCc
Q psy2967          20 NMRKITKGNVTIWPVPLSGQ   39 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~   39 (101)
                      ..|++|+|||+|++.+....
T Consensus        25 l~G~rg~GKTsLl~~~~~~~   44 (234)
T PF01637_consen   25 LYGPRGSGKTSLLKEFINEL   44 (234)
T ss_dssp             EEESTTSSHHHHHHHHHHHC
T ss_pred             EEcCCcCCHHHHHHHHHHHh
Confidence            35999999999999888643

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>PRK08233 hypothetical protein; Provisional

Probab=94.58  E-value=0.0087  Score=37.71  Aligned_cols=17  Identities=12%  Similarity=-0.077  Sum_probs=14.8

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|.+|+|||||..++..
T Consensus         9 ~G~~GsGKtTla~~L~~   25 (182)
T PRK08233          9 AAVSGGGKTTLTERLTH   25 (182)
T ss_pred             ECCCCCCHHHHHHHHHh
Confidence            49999999999988764

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=94.40  E-value=0.0063  Score=37.33  Aligned_cols=18  Identities=17%  Similarity=0.038  Sum_probs=15.9

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|++|+|||+|++.+...
T Consensus         5 ~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           5 SGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             ECCCCCCHHHHHHHHHhc
Confidence            699999999999998853

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=94.39  E-value=0.0075  Score=35.77  Aligned_cols=16  Identities=6%  Similarity=-0.066  Sum_probs=14.2

Q ss_pred             eccCCCcceeeeeccc
Q psy2967          21 MRKITKGNVTIWPVPL   36 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~   36 (101)
                      +|++|+|||||++.+.
T Consensus        21 ~GpSGsGKSTLl~~l~   36 (107)
T cd00820          21 TGDSGIGKTELALELI   36 (107)
T ss_pred             EcCCCCCHHHHHHHhh
Confidence            4889999999999876

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=94.38  E-value=0.01  Score=38.82  Aligned_cols=23  Identities=13%  Similarity=0.238  Sum_probs=16.8

Q ss_pred             ceeeeEe-ccCCCcceeeeecccc
Q psy2967          15 PTVGFNM-RKITKGNVTIWPVPLS   37 (101)
Q Consensus        15 ~~~g~~v-G~~~vGKtsl~~~~~~   37 (101)
                      |++-+++ |++|+|||+|+.+.+.
T Consensus        12 ~~~~i~v~Gp~GSGKTaLie~~~~   35 (202)
T COG0378          12 PMLRIGVGGPPGSGKTALIEKTLR   35 (202)
T ss_pred             ceEEEEecCCCCcCHHHHHHHHHH
Confidence            4444444 9999999999977553

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=94.38  E-value=0.027  Score=34.20  Aligned_cols=45  Identities=16%  Similarity=0.192  Sum_probs=24.8

Q ss_pred             ccCCCcceeeeeccccCc--CCCCCCCccceEEEEEecCcEEEEEEee
Q psy2967          22 RKITKGNVTIWPVPLSGQ--FSQDMIPTVGFNMRKITKGNVTIKVWDI   67 (101)
Q Consensus        22 G~~~vGKtsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~i~D~   67 (101)
                      |+-|+|||+|++.+...-  ...-.+||...- ..+...+..+..+|.
T Consensus        22 GdLGaGKTtf~r~l~~~lg~~~~V~SPTF~l~-~~Y~~~~~~l~H~DL   68 (123)
T PF02367_consen   22 GDLGAGKTTFVRGLARALGIDEEVTSPTFSLV-NEYEGGNIPLYHFDL   68 (123)
T ss_dssp             ESTTSSHHHHHHHHHHHTT--S----TTTTSE-EEEEETTEEEEEEE-
T ss_pred             CCCCCCHHHHHHHHHHHcCCCCCcCCCCeEEE-EEecCCCceEEEeec
Confidence            899999999999887532  112356765532 223335555555553

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PLN02200 adenylate kinase family protein

Probab=94.22  E-value=0.017  Score=38.64  Aligned_cols=25  Identities=16%  Similarity=0.111  Sum_probs=19.7

Q ss_pred             ccceeeeEeccCCCcceeeeecccc
Q psy2967          13 MIPTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        13 ~~~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      ..|++-+.+|.||+|||++..++..
T Consensus        41 ~~~~ii~I~G~PGSGKsT~a~~La~   65 (234)
T PLN02200         41 KTPFITFVLGGPGSGKGTQCEKIVE   65 (234)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3566666779999999999877663

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=94.18  E-value=0.01  Score=40.44  Aligned_cols=23  Identities=13%  Similarity=0.177  Sum_probs=17.3

Q ss_pred             cceeeeEeccCCCcceeeeecccc
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      .+++|+ -|+||+|||||+..+..
T Consensus        29 a~~iGi-TG~PGaGKSTli~~l~~   51 (266)
T PF03308_consen   29 AHVIGI-TGPPGAGKSTLIDALIR   51 (266)
T ss_dssp             SEEEEE-EE-TTSSHHHHHHHHHH
T ss_pred             ceEEEe-eCCCCCcHHHHHHHHHH
Confidence            456775 49999999999987664

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=94.14  E-value=0.007  Score=38.17  Aligned_cols=17  Identities=12%  Similarity=0.014  Sum_probs=14.1

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|.+|+||||+++.+..
T Consensus         1 ~G~sGsGKSTla~~la~   17 (163)
T PRK11545          1 MGVSGSGKSAVASEVAH   17 (163)
T ss_pred             CCCCCCcHHHHHHHHHH
Confidence            58899999999986553

>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional

Probab=94.14  E-value=0.012  Score=42.92  Aligned_cols=22  Identities=9%  Similarity=0.089  Sum_probs=17.1

Q ss_pred             ceeeeEeccCCCcceeeeecccc
Q psy2967          15 PTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        15 ~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      +++++ +|.+|+|||||+.+++.
T Consensus         2 kVi~I-vG~sgSGKTTLiekLI~   23 (452)
T PRK14495          2 RVYGI-IGWKDAGKTGLVERLVA   23 (452)
T ss_pred             cEEEE-EecCCCCHHHHHHHHHH
Confidence            44554 58889999999998874

>PTZ00301 uridine kinase; Provisional

Probab=94.13  E-value=0.011  Score=39.06  Aligned_cols=21  Identities=10%  Similarity=0.156  Sum_probs=15.7

Q ss_pred             ceeeeEeccCCCcceeeeeccc
Q psy2967          15 PTVGFNMRKITKGNVTIWPVPL   36 (101)
Q Consensus        15 ~~~g~~vG~~~vGKtsl~~~~~   36 (101)
                      .++|+ .|++|+|||||.+++.
T Consensus         4 ~iIgI-aG~SgSGKTTla~~l~   24 (210)
T PTZ00301          4 TVIGI-SGASGSGKSSLSTNIV   24 (210)
T ss_pred             EEEEE-ECCCcCCHHHHHHHHH
Confidence            34554 4999999999997553

>TIGR03263 guanyl_kin guanylate kinase

Probab=94.10  E-value=0.013  Score=37.11  Aligned_cols=19  Identities=16%  Similarity=-0.010  Sum_probs=16.1

Q ss_pred             EeccCCCcceeeeeccccC
Q psy2967          20 NMRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~   38 (101)
                      .+|++|+|||||++.+...
T Consensus         6 l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         6 ISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EECCCCCCHHHHHHHHHcc
Confidence            3589999999999998763

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma

Probab=94.08  E-value=0.2  Score=33.99  Aligned_cols=58  Identities=21%  Similarity=0.158  Sum_probs=38.5

Q ss_pred             ceeeeE-eccCCCcceeeeeccccCc--CC---CCCCCccceEEEE---EecCcEEEEEEeeCCCCc
Q psy2967          15 PTVGFN-MRKITKGNVTIWPVPLSGQ--FS---QDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPR   72 (101)
Q Consensus        15 ~~~g~~-vG~~~vGKtsl~~~~~~~~--~~---~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~   72 (101)
                      |+.-+. +|+...|||.|++++.+..  |.   .....|.|+-+-.   -.+..+.+.+.||.|...
T Consensus        20 ~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~   86 (260)
T PF02263_consen   20 PVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGD   86 (260)
T ss_dssp             BEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTT
T ss_pred             CEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhccc
Confidence            444444 4999999999999998642  21   1235666765533   234678999999988755

GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.

>PRK07667 uridine kinase; Provisional

Probab=94.05  E-value=0.011  Score=38.20  Aligned_cols=22  Identities=14%  Similarity=0.069  Sum_probs=17.4

Q ss_pred             ceeeeEeccCCCcceeeeecccc
Q psy2967          15 PTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        15 ~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      .++|+. |.+|+|||++.+.+..
T Consensus        18 ~iIgI~-G~~gsGKStla~~L~~   39 (193)
T PRK07667         18 FILGID-GLSRSGKTTFVANLKE   39 (193)
T ss_pred             EEEEEE-CCCCCCHHHHHHHHHH
Confidence            466654 9999999998877654

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=94.04  E-value=0.0091  Score=40.65  Aligned_cols=17  Identities=12%  Similarity=0.094  Sum_probs=14.3

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|+.|||||||++.+..
T Consensus        34 iGpNG~GKSTLLk~l~g   50 (258)
T COG1120          34 LGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             ECCCCCCHHHHHHHHhc
Confidence            36679999999998775

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=94.00  E-value=0.016  Score=39.65  Aligned_cols=22  Identities=9%  Similarity=-0.099  Sum_probs=17.4

Q ss_pred             eeeeEeccCCCcceeeeecccc
Q psy2967          16 TVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        16 ~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      .+-+.+|.+|+||||+.+++..
T Consensus         3 ~liil~G~pGSGKSTla~~L~~   24 (300)
T PHA02530          3 KIILTVGVPGSGKSTWAREFAA   24 (300)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4445569999999999998764

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=93.91  E-value=0.012  Score=36.69  Aligned_cols=17  Identities=24%  Similarity=0.118  Sum_probs=14.3

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|++|+||||+.+.+..
T Consensus         4 ~G~~GsGKSTla~~l~~   20 (163)
T TIGR01313         4 MGVAGSGKSTIASALAH   20 (163)
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            58899999999887653

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=93.90  E-value=0.01  Score=38.75  Aligned_cols=18  Identities=11%  Similarity=-0.003  Sum_probs=15.5

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++.+.+-
T Consensus        36 ~G~nGsGKSTLl~~i~Gl   53 (218)
T cd03255          36 VGPSGSGKSTLLNILGGL   53 (218)
T ss_pred             EcCCCCCHHHHHHHHhCC
Confidence            388899999999998854

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PTZ00088 adenylate kinase 1; Provisional

Probab=93.89  E-value=0.015  Score=38.90  Aligned_cols=25  Identities=12%  Similarity=-0.152  Sum_probs=19.6

Q ss_pred             ccceeeeEeccCCCcceeeeecccc
Q psy2967          13 MIPTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        13 ~~~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      .+|+.-+.+|+|||||||+..++..
T Consensus         4 ~~~mrIvl~G~PGsGK~T~a~~La~   28 (229)
T PTZ00088          4 KGPLKIVLFGAPGVGKGTFAEILSK   28 (229)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            3566555679999999999988764

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=93.84  E-value=0.017  Score=37.65  Aligned_cols=22  Identities=18%  Similarity=0.010  Sum_probs=16.8

Q ss_pred             ceeeeEeccCCCcceeeeeccc
Q psy2967          15 PTVGFNMRKITKGNVTIWPVPL   36 (101)
Q Consensus        15 ~~~g~~vG~~~vGKtsl~~~~~   36 (101)
                      |.+-+-||+.||||||.+-++.
T Consensus         1 p~vi~lvGptGvGKTTt~aKLA   22 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLA   22 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCchHhHHHHHH
Confidence            4455567999999999887654

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=93.82  E-value=0.011  Score=37.84  Aligned_cols=16  Identities=19%  Similarity=0.057  Sum_probs=13.6

Q ss_pred             eccCCCcceeeeeccc
Q psy2967          21 MRKITKGNVTIWPVPL   36 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~   36 (101)
                      +|+.|+|||||++.+.
T Consensus        27 ~G~nG~GKSTLl~~il   42 (176)
T cd03238          27 TGVSGSGKSTLVNEGL   42 (176)
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            3778999999998775

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=93.82  E-value=0.014  Score=39.18  Aligned_cols=20  Identities=15%  Similarity=0.152  Sum_probs=16.4

Q ss_pred             eEeccCCCcceeeeeccccC
Q psy2967          19 FNMRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~   38 (101)
                      +..|++|+|||++++.+...
T Consensus        47 ~l~G~~G~GKTtl~~~l~~~   66 (269)
T TIGR03015        47 LITGEVGAGKTTLIRNLLKR   66 (269)
T ss_pred             EEEcCCCCCHHHHHHHHHHh
Confidence            34699999999999988753

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=93.82  E-value=0.011  Score=37.43  Aligned_cols=19  Identities=16%  Similarity=0.065  Sum_probs=15.6

Q ss_pred             eEeccCCCcceeeeecccc
Q psy2967          19 FNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~   37 (101)
                      +.+|+||+|||++..++..
T Consensus         3 ~i~G~pGsGKst~a~~la~   21 (183)
T TIGR01359         3 FVLGGPGSGKGTQCAKIVE   21 (183)
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            3469999999999888764

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=93.81  E-value=0.016  Score=37.70  Aligned_cols=20  Identities=15%  Similarity=0.018  Sum_probs=17.1

Q ss_pred             EeccCCCcceeeeeccccCc
Q psy2967          20 NMRKITKGNVTIWPVPLSGQ   39 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~   39 (101)
                      ..|++|||||||++.+....
T Consensus         9 lsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           9 LSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             EECCCCCCHHHHHHHHHhhc
Confidence            35999999999999988654

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=93.81  E-value=0.011  Score=38.57  Aligned_cols=18  Identities=17%  Similarity=0.106  Sum_probs=15.5

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        35 ~G~nGsGKSTLl~~l~Gl   52 (216)
T TIGR00960        35 VGHSGAGKSTFLKLILGI   52 (216)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            388899999999998864

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=93.78  E-value=0.0087  Score=35.10  Aligned_cols=17  Identities=12%  Similarity=-0.103  Sum_probs=14.9

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|++|+|||+|++.+..
T Consensus         4 ~G~~G~GKS~l~~~l~~   20 (107)
T PF00910_consen    4 YGPPGIGKSTLAKELAK   20 (107)
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999764

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional

Probab=93.78  E-value=0.015  Score=39.83  Aligned_cols=21  Identities=10%  Similarity=0.128  Sum_probs=15.8

Q ss_pred             eeeeEeccCCCcceeeeecccc
Q psy2967          16 TVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        16 ~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      ++++ +|.+|+|||||+.+++.
T Consensus         3 ~i~i-~G~~gSGKTTLi~~Li~   23 (274)
T PRK14493          3 VLSI-VGYKATGKTTLVERLVD   23 (274)
T ss_pred             EEEE-ECCCCCCHHHHHHHHHH
Confidence            4443 58889999999987663

>PRK06547 hypothetical protein; Provisional

Probab=93.75  E-value=0.016  Score=37.07  Aligned_cols=18  Identities=11%  Similarity=-0.029  Sum_probs=15.3

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      ..|.+|+||||+.+.+..
T Consensus        20 i~G~~GsGKTt~a~~l~~   37 (172)
T PRK06547         20 IDGRSGSGKTTLAGALAA   37 (172)
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            349999999999988864

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=93.74  E-value=0.011  Score=38.22  Aligned_cols=18  Identities=17%  Similarity=0.028  Sum_probs=15.4

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        32 ~G~nGsGKSTLl~~l~Gl   49 (205)
T cd03226          32 TGKNGAGKTTLAKILAGL   49 (205)
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            388899999999998864

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK00300 gmk guanylate kinase; Provisional

Probab=93.74  E-value=0.01  Score=38.30  Aligned_cols=19  Identities=16%  Similarity=0.006  Sum_probs=15.7

Q ss_pred             EeccCCCcceeeeeccccC
Q psy2967          20 NMRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~   38 (101)
                      .+|++|+|||+|++.+...
T Consensus        10 i~G~sGsGKstl~~~l~~~   28 (205)
T PRK00300         10 LSGPSGAGKSTLVKALLER   28 (205)
T ss_pred             EECCCCCCHHHHHHHHHhh
Confidence            3589999999999887753

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=93.73  E-value=0.011  Score=38.34  Aligned_cols=18  Identities=11%  Similarity=-0.020  Sum_probs=15.4

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        33 ~G~nGsGKSTLl~~l~G~   50 (211)
T cd03225          33 VGPNGSGKSTLLRLLNGL   50 (211)
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            388899999999988854

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=93.72  E-value=0.012  Score=39.10  Aligned_cols=18  Identities=11%  Similarity=-0.044  Sum_probs=15.2

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++.+.+-
T Consensus        34 ~G~nGsGKSTLl~~l~Gl   51 (243)
T TIGR02315        34 IGPSGAGKSTLLRCINRL   51 (243)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            388899999999988753

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=93.70  E-value=0.016  Score=37.66  Aligned_cols=17  Identities=12%  Similarity=0.038  Sum_probs=14.3

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|++|||||||++.+..
T Consensus        12 ~G~sGsGKTTl~~~l~~   28 (209)
T PRK05480         12 AGGSGSGKTTVASTIYE   28 (209)
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999887653

>PRK10646 ADP-binding protein; Provisional

Probab=93.65  E-value=0.044  Score=34.54  Aligned_cols=17  Identities=18%  Similarity=0.102  Sum_probs=15.1

Q ss_pred             ccCCCcceeeeeccccC
Q psy2967          22 RKITKGNVTIWPVPLSG   38 (101)
Q Consensus        22 G~~~vGKtsl~~~~~~~   38 (101)
                      |+-|+|||+|++.+...
T Consensus        35 GdLGaGKTtf~rgl~~~   51 (153)
T PRK10646         35 GDLGAGKTTFSRGFLQA   51 (153)
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            99999999999998753

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=93.63  E-value=0.012  Score=39.69  Aligned_cols=19  Identities=11%  Similarity=0.041  Sum_probs=16.3

Q ss_pred             eccCCCcceeeeeccccCc
Q psy2967          21 MRKITKGNVTIWPVPLSGQ   39 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~   39 (101)
                      +|++|||||||.+.+.+=+
T Consensus        39 vGeSGsGKSTL~r~l~Gl~   57 (252)
T COG1124          39 VGESGSGKSTLARLLAGLE   57 (252)
T ss_pred             EcCCCCCHHHHHHHHhccc
Confidence            5999999999999988643

>PRK14530 adenylate kinase; Provisional

Probab=93.62  E-value=0.014  Score=38.27  Aligned_cols=18  Identities=11%  Similarity=-0.171  Sum_probs=15.2

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      .+|++|+||||+.+++..
T Consensus         8 i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          8 LLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            379999999999988753

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=93.61  E-value=0.012  Score=37.62  Aligned_cols=18  Identities=11%  Similarity=-0.099  Sum_probs=15.0

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        24 ~G~nGsGKSTLl~~i~G~   41 (190)
T TIGR01166        24 LGANGAGKSTLLLHLNGL   41 (190)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            477899999999988753

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=93.57  E-value=0.013  Score=38.30  Aligned_cols=18  Identities=11%  Similarity=0.147  Sum_probs=15.2

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        32 ~G~nGsGKSTLl~~l~Gl   49 (222)
T cd03224          32 LGRNGAGKTTLLKTIMGL   49 (222)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            388899999999988754

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=93.56  E-value=0.013  Score=37.98  Aligned_cols=18  Identities=11%  Similarity=-0.042  Sum_probs=15.1

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      .|.+|+|||||.+.+...
T Consensus         5 ~G~sgsGKTtla~~l~~~   22 (187)
T cd02024           5 SGVTNSGKTTLAKLLQRI   22 (187)
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            389999999999887753

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=93.54  E-value=0.013  Score=38.12  Aligned_cols=18  Identities=11%  Similarity=0.084  Sum_probs=15.5

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        31 ~G~nGsGKSTLl~~l~Gl   48 (211)
T cd03264          31 LGPNGAGKTTLMRILATL   48 (211)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            488899999999998853

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=93.52  E-value=0.013  Score=38.09  Aligned_cols=18  Identities=17%  Similarity=0.047  Sum_probs=15.5

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        32 ~G~nGsGKSTLl~~l~G~   49 (210)
T cd03269          32 LGPNGAGKTTTIRMILGI   49 (210)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            388899999999999864

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=93.52  E-value=0.013  Score=38.73  Aligned_cols=18  Identities=11%  Similarity=0.099  Sum_probs=15.4

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        32 ~G~nGsGKSTLl~~l~G~   49 (235)
T cd03261          32 IGPSGSGKSTLLRLIVGL   49 (235)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            388899999999998854

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=93.52  E-value=0.014  Score=39.87  Aligned_cols=16  Identities=13%  Similarity=-0.084  Sum_probs=14.3

Q ss_pred             eccCCCcceeeeeccc
Q psy2967          21 MRKITKGNVTIWPVPL   36 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~   36 (101)
                      .|++|||||||++.+.
T Consensus         5 ~G~sGsGKSTl~~~L~   20 (273)
T cd02026           5 AGDSGCGKSTFLRRLT   20 (273)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            4999999999998876

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>cd03112 CobW_like The function of this protein family is unkown

Probab=93.49  E-value=0.018  Score=36.06  Aligned_cols=18  Identities=17%  Similarity=0.143  Sum_probs=15.2

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|..|+|||+|++++...
T Consensus         6 ~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           6 TGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             EECCCCCHHHHHHHHHhc
Confidence            577899999999987754

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=93.47  E-value=0.013  Score=38.29  Aligned_cols=18  Identities=11%  Similarity=-0.003  Sum_probs=15.4

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        36 ~G~nGsGKSTLl~~l~Gl   53 (220)
T cd03293          36 VGPSGCGKSTLLRIIAGL   53 (220)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            388899999999998854

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=93.46  E-value=0.016  Score=35.56  Aligned_cols=17  Identities=18%  Similarity=0.061  Sum_probs=14.6

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|.+|+||||+.+.+..
T Consensus         5 ~G~~GsGKST~a~~l~~   21 (150)
T cd02021           5 MGVSGSGKSTVGKALAE   21 (150)
T ss_pred             EcCCCCCHHHHHHHHHh
Confidence            58999999999988764

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PRK14527 adenylate kinase; Provisional

Probab=93.44  E-value=0.02  Score=36.76  Aligned_cols=22  Identities=14%  Similarity=-0.157  Sum_probs=17.2

Q ss_pred             ceeeeEeccCCCcceeeeeccc
Q psy2967          15 PTVGFNMRKITKGNVTIWPVPL   36 (101)
Q Consensus        15 ~~~g~~vG~~~vGKtsl~~~~~   36 (101)
                      |.+-+.+|++|+||||+..++.
T Consensus         6 ~~~i~i~G~pGsGKsT~a~~La   27 (191)
T PRK14527          6 NKVVIFLGPPGAGKGTQAERLA   27 (191)
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3444557999999999998876

>KOG0733|consensus

Probab=93.42  E-value=0.015  Score=44.15  Aligned_cols=25  Identities=12%  Similarity=0.066  Sum_probs=21.8

Q ss_pred             cceeeeEe-ccCCCcceeeeeccccC
Q psy2967          14 IPTVGFNM-RKITKGNVTIWPVPLSG   38 (101)
Q Consensus        14 ~~~~g~~v-G~~~vGKtsl~~~~~~~   38 (101)
                      .|..|+-+ |+||||||+|.+.+.+.
T Consensus       221 ~PprGvLlHGPPGCGKT~lA~AiAge  246 (802)
T KOG0733|consen  221 RPPRGVLLHGPPGCGKTSLANAIAGE  246 (802)
T ss_pred             CCCCceeeeCCCCccHHHHHHHHhhh
Confidence            68888776 99999999999999864

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=93.39  E-value=0.068  Score=38.63  Aligned_cols=17  Identities=12%  Similarity=0.030  Sum_probs=13.6

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      ||+.||||||-+.++..
T Consensus       209 VGPTGVGKTTTlAKLAa  225 (407)
T COG1419         209 VGPTGVGKTTTLAKLAA  225 (407)
T ss_pred             ECCCCCcHHHHHHHHHH
Confidence            59999999998766553

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=93.38  E-value=0.011  Score=36.51  Aligned_cols=17  Identities=12%  Similarity=-0.140  Sum_probs=15.1

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|+||+||+++..++..
T Consensus         2 ~G~PgsGK~t~~~~la~   18 (151)
T PF00406_consen    2 LGPPGSGKGTQAKRLAK   18 (151)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             cCCCCCChHHHHHHHHH
Confidence            69999999999988775

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PRK14532 adenylate kinase; Provisional

Probab=93.38  E-value=0.015  Score=37.10  Aligned_cols=18  Identities=11%  Similarity=-0.130  Sum_probs=15.4

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      .+|+||+||||+..++..
T Consensus         5 ~~G~pGsGKsT~a~~la~   22 (188)
T PRK14532          5 LFGPPAAGKGTQAKRLVE   22 (188)
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            469999999999988764

>TIGR00101 ureG urease accessory protein UreG

Probab=93.37  E-value=0.02  Score=37.33  Aligned_cols=17  Identities=6%  Similarity=0.092  Sum_probs=14.5

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|+.|+|||||++++..
T Consensus         7 ~G~~GsGKTTll~~l~~   23 (199)
T TIGR00101         7 AGPVGSGKTALIEALTR   23 (199)
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            58899999999987664

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=93.37  E-value=0.014  Score=37.88  Aligned_cols=18  Identities=11%  Similarity=-0.069  Sum_probs=15.6

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        32 ~G~nGsGKSTLl~~l~G~   49 (213)
T cd03262          32 IGPSGSGKSTLLRCINLL   49 (213)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            488899999999999864

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=93.35  E-value=0.015  Score=38.54  Aligned_cols=18  Identities=11%  Similarity=-0.027  Sum_probs=15.5

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++.+.+-
T Consensus        33 ~G~nGsGKSTLl~~l~Gl   50 (241)
T cd03256          33 IGPSGAGKSTLLRCLNGL   50 (241)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            388899999999998854

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=93.34  E-value=0.015  Score=37.90  Aligned_cols=18  Identities=11%  Similarity=0.119  Sum_probs=15.2

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        34 ~G~nGsGKSTLl~~i~Gl   51 (214)
T TIGR02673        34 TGPSGAGKTTLLKLLYGA   51 (214)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            388899999999988754

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=93.32  E-value=0.023  Score=37.38  Aligned_cols=21  Identities=14%  Similarity=0.151  Sum_probs=16.9

Q ss_pred             eEeccCCCcceeeeeccccCc
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQ   39 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~   39 (101)
                      |.+|++|+|||||++-+...+
T Consensus        32 fl~GpSGAGKSTllkLi~~~e   52 (223)
T COG2884          32 FLTGPSGAGKSTLLKLIYGEE   52 (223)
T ss_pred             EEECCCCCCHHHHHHHHHhhh
Confidence            446999999999998877543

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=93.29  E-value=0.015  Score=38.11  Aligned_cols=18  Identities=11%  Similarity=-0.018  Sum_probs=15.3

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        32 ~G~nGsGKSTLl~~i~G~   49 (220)
T cd03265          32 LGPNGAGKTTTIKMLTTL   49 (220)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            378899999999998854

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A

Probab=93.29  E-value=0.019  Score=36.40  Aligned_cols=16  Identities=19%  Similarity=0.032  Sum_probs=13.3

Q ss_pred             eccCCCcceeeeeccc
Q psy2967          21 MRKITKGNVTIWPVPL   36 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~   36 (101)
                      .|+.|+|||||+..+.
T Consensus        25 ~G~Ng~GKStil~ai~   40 (202)
T PF13476_consen   25 YGPNGSGKSTILEAIR   40 (202)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            3999999999987644

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=93.28  E-value=0.02  Score=38.09  Aligned_cols=21  Identities=14%  Similarity=0.117  Sum_probs=16.6

Q ss_pred             eeeeEeccCCCcceeeeecccc
Q psy2967          16 TVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        16 ~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      ++|+ .|++|+||||+.+++..
T Consensus        10 iIgI-aG~SgSGKTTva~~l~~   30 (218)
T COG0572          10 IIGI-AGGSGSGKTTVAKELSE   30 (218)
T ss_pred             EEEE-eCCCCCCHHHHHHHHHH
Confidence            4453 49999999999988764

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=93.26  E-value=0.015  Score=36.97  Aligned_cols=18  Identities=11%  Similarity=0.016  Sum_probs=15.2

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++.+.+-
T Consensus        32 ~G~nGsGKSTLl~~l~G~   49 (178)
T cd03229          32 LGPSGSGKSTLLRCIAGL   49 (178)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            388899999999998753

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=93.26  E-value=0.015  Score=37.58  Aligned_cols=18  Identities=11%  Similarity=-0.005  Sum_probs=15.5

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        30 ~G~nGsGKSTLl~~l~G~   47 (206)
T TIGR03608        30 IGESGSGKSTLLNIIGLL   47 (206)
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            388899999999999864

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=93.25  E-value=0.015  Score=37.77  Aligned_cols=18  Identities=11%  Similarity=0.106  Sum_probs=15.5

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        33 ~G~nGsGKSTLl~~l~G~   50 (214)
T cd03292          33 VGPSGAGKSTLLKLIYKE   50 (214)
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            388899999999998854

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=93.24  E-value=0.016  Score=37.74  Aligned_cols=18  Identities=17%  Similarity=0.069  Sum_probs=15.3

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        31 ~G~nGsGKSTLl~~l~G~   48 (213)
T cd03235          31 VGPNGAGKSTLLKAILGL   48 (213)
T ss_pred             ECCCCCCHHHHHHHHcCC
Confidence            488899999999988754

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=93.23  E-value=0.015  Score=37.77  Aligned_cols=18  Identities=11%  Similarity=-0.053  Sum_probs=15.4

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        32 ~G~nGsGKSTLl~~l~G~   49 (213)
T cd03301          32 LGPSGCGKTTTLRMIAGL   49 (213)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            388899999999988864

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=93.21  E-value=0.015  Score=38.25  Aligned_cols=19  Identities=11%  Similarity=-0.034  Sum_probs=15.8

Q ss_pred             eccCCCcceeeeeccccCc
Q psy2967          21 MRKITKGNVTIWPVPLSGQ   39 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~   39 (101)
                      +|+.|+|||||++-+.+-.
T Consensus        32 ~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          32 IGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             ECCCCCCHHHHHHHHHhhc
Confidence            3888999999999988643

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=93.20  E-value=0.014  Score=37.50  Aligned_cols=18  Identities=11%  Similarity=0.023  Sum_probs=15.3

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        31 ~G~nGsGKSTLl~~l~Gl   48 (177)
T cd03222          31 VGPNGTGKTTAVKILAGQ   48 (177)
T ss_pred             ECCCCChHHHHHHHHHcC
Confidence            478899999999988854

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=93.18  E-value=0.016  Score=37.75  Aligned_cols=18  Identities=11%  Similarity=0.014  Sum_probs=15.2

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        32 ~G~nGsGKSTLl~~l~G~   49 (213)
T cd03259          32 LGPSGCGKTTLLRLIAGL   49 (213)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            388899999999988753

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK06217 hypothetical protein; Validated

Probab=93.18  E-value=0.024  Score=36.21  Aligned_cols=18  Identities=11%  Similarity=-0.036  Sum_probs=15.3

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      .+|.+|+||||+.+++..
T Consensus         6 i~G~~GsGKSTla~~L~~   23 (183)
T PRK06217          6 ITGASGSGTTTLGAALAE   23 (183)
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            358899999999998775

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=93.18  E-value=0.017  Score=35.15  Aligned_cols=18  Identities=11%  Similarity=-0.025  Sum_probs=15.4

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      .|++|+|||+|+..+...
T Consensus         5 ~G~~G~GKT~l~~~i~~~   22 (165)
T cd01120           5 FGPTGSGKTTLALQLALN   22 (165)
T ss_pred             eCCCCCCHHHHHHHHHHH
Confidence            599999999999888653

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=93.17  E-value=0.016  Score=37.87  Aligned_cols=18  Identities=11%  Similarity=0.071  Sum_probs=15.6

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        34 ~G~nGsGKSTLl~~l~Gl   51 (220)
T cd03263          34 LGHNGAGKTTTLKMLTGE   51 (220)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            388899999999999864

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=93.16  E-value=0.016  Score=37.94  Aligned_cols=18  Identities=17%  Similarity=0.071  Sum_probs=15.5

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        37 ~G~nGsGKSTLl~~l~G~   54 (228)
T cd03257          37 VGESGSGKSTLARAILGL   54 (228)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            388899999999998864

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=93.16  E-value=0.017  Score=38.16  Aligned_cols=18  Identities=11%  Similarity=0.082  Sum_probs=15.3

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        32 ~G~nGsGKSTLl~~l~Gl   49 (236)
T cd03219          32 IGPNGAGKTTLFNLISGF   49 (236)
T ss_pred             ECCCCCCHHHHHHHHcCC
Confidence            388899999999988854

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=93.15  E-value=0.016  Score=38.21  Aligned_cols=18  Identities=11%  Similarity=0.008  Sum_probs=15.4

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++.+.+-
T Consensus        37 ~G~nGsGKSTLl~~l~G~   54 (233)
T cd03258          37 IGRSGAGKSTLIRCINGL   54 (233)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            388899999999998854

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=93.13  E-value=0.016  Score=37.87  Aligned_cols=18  Identities=11%  Similarity=-0.018  Sum_probs=15.6

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        37 ~G~nGsGKSTLl~~i~G~   54 (221)
T TIGR02211        37 VGSSGSGKSTLLHLLGGL   54 (221)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            388899999999998864

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=93.13  E-value=0.021  Score=37.12  Aligned_cols=17  Identities=12%  Similarity=0.102  Sum_probs=14.7

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|+.|+||||+++.+..
T Consensus         7 ~GptGSGKTTll~~ll~   23 (198)
T cd01131           7 TGPTGSGKSTTLAAMID   23 (198)
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999988664

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=93.11  E-value=0.017  Score=38.10  Aligned_cols=18  Identities=11%  Similarity=0.067  Sum_probs=15.5

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        32 ~G~nGsGKSTLl~~l~Gl   49 (232)
T cd03218          32 LGPNGAGKTTTFYMIVGL   49 (232)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            488899999999998864

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=93.11  E-value=0.022  Score=37.33  Aligned_cols=18  Identities=11%  Similarity=0.012  Sum_probs=15.3

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        19 ~G~NGsGKSTLlk~i~Gl   36 (213)
T PRK15177         19 LAAPGSGKTTLTRLLCGL   36 (213)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            477899999999988864

>KOG2485|consensus

Probab=93.07  E-value=0.028  Score=39.32  Aligned_cols=19  Identities=5%  Similarity=-0.015  Sum_probs=15.7

Q ss_pred             eEeccCCCcceeeeecccc
Q psy2967          19 FNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~   37 (101)
                      +.+|-||||||||++....
T Consensus       147 mVvGvPNVGKSsLINa~r~  165 (335)
T KOG2485|consen  147 MVVGVPNVGKSSLINALRN  165 (335)
T ss_pred             EEEcCCCCChHHHHHHHHH
Confidence            4468899999999997664

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=93.07  E-value=0.017  Score=39.07  Aligned_cols=17  Identities=12%  Similarity=0.038  Sum_probs=14.5

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|++|+|||||++.+..
T Consensus        36 IG~SGaGKSTLLR~lng   52 (258)
T COG3638          36 IGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             ECCCCCcHHHHHHHHhc
Confidence            37789999999988875

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=93.05  E-value=0.017  Score=38.31  Aligned_cols=18  Identities=11%  Similarity=0.067  Sum_probs=15.6

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++.+.+-
T Consensus        34 ~G~nGsGKSTLl~~l~Gl   51 (239)
T cd03296          34 LGPSGSGKTTLLRLIAGL   51 (239)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            388899999999998854

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK03839 putative kinase; Provisional

Probab=93.04  E-value=0.02  Score=36.34  Aligned_cols=18  Identities=11%  Similarity=-0.036  Sum_probs=14.9

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      -+|.+|+||||+.+++..
T Consensus         5 l~G~pGsGKsT~~~~La~   22 (180)
T PRK03839          5 ITGTPGVGKTTVSKLLAE   22 (180)
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            358899999999887764

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=93.02  E-value=0.013  Score=36.58  Aligned_cols=18  Identities=11%  Similarity=0.065  Sum_probs=13.7

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      .|.+++|||||++.+...
T Consensus         5 ~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    5 TGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             E--TTSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHc
Confidence            499999999999988754

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=93.01  E-value=0.018  Score=38.11  Aligned_cols=18  Identities=17%  Similarity=0.038  Sum_probs=15.4

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        32 ~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        32 MGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            377899999999998864

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=92.99  E-value=0.018  Score=37.56  Aligned_cols=17  Identities=12%  Similarity=-0.077  Sum_probs=15.0

Q ss_pred             ccCCCcceeeeeccccC
Q psy2967          22 RKITKGNVTIWPVPLSG   38 (101)
Q Consensus        22 G~~~vGKtsl~~~~~~~   38 (101)
                      |+.|+|||||++-+.+-
T Consensus        38 G~nGsGKSTLl~~l~Gl   54 (218)
T cd03266          38 GPNGAGKTTTLRMLAGL   54 (218)
T ss_pred             CCCCCCHHHHHHHHhCC
Confidence            88899999999998854

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=92.99  E-value=0.017  Score=37.40  Aligned_cols=17  Identities=18%  Similarity=0.048  Sum_probs=15.1

Q ss_pred             ccCCCcceeeeeccccC
Q psy2967          22 RKITKGNVTIWPVPLSG   38 (101)
Q Consensus        22 G~~~vGKtsl~~~~~~~   38 (101)
                      |+.|+|||||++-+.+-
T Consensus        33 G~nGsGKSTLl~~l~Gl   49 (208)
T cd03268          33 GPNGAGKTTTMKIILGL   49 (208)
T ss_pred             CCCCCCHHHHHHHHhCC
Confidence            88899999999998864

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=92.98  E-value=0.02  Score=36.19  Aligned_cols=19  Identities=16%  Similarity=-0.134  Sum_probs=15.9

Q ss_pred             EeccCCCcceeeeeccccC
Q psy2967          20 NMRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~   38 (101)
                      ..|+||+|||+|..+|...
T Consensus         4 i~G~~G~GKT~l~~~~~~~   22 (187)
T cd01124           4 LSGGPGTGKTTFALQFLYA   22 (187)
T ss_pred             EEcCCCCCHHHHHHHHHHH
Confidence            4599999999999887653

A related protein is found in archaea.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=92.97  E-value=0.016  Score=37.16  Aligned_cols=17  Identities=18%  Similarity=0.177  Sum_probs=14.8

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|+.|+||||+++.+.+
T Consensus        31 ~G~tGSGKTTll~aL~~   47 (186)
T cd01130          31 SGGTGSGKTTLLNALLA   47 (186)
T ss_pred             ECCCCCCHHHHHHHHHh
Confidence            48999999999988774

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=92.95  E-value=0.021  Score=38.49  Aligned_cols=26  Identities=19%  Similarity=0.078  Sum_probs=20.7

Q ss_pred             eccCCCcceeeeeccccCcCCCCCCCccc
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQDMIPTVG   49 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~   49 (101)
                      +|+.|+|||||.+.+.+.+   .|..|-|
T Consensus        36 MGPNGsGKSTLa~~i~G~p---~Y~Vt~G   61 (251)
T COG0396          36 MGPNGSGKSTLAYTIMGHP---KYEVTEG   61 (251)
T ss_pred             ECCCCCCHHHHHHHHhCCC---CceEecc
Confidence            3777999999999999774   5666655

>KOG0458|consensus

Probab=92.94  E-value=0.28  Score=37.07  Aligned_cols=29  Identities=21%  Similarity=0.371  Sum_probs=23.0

Q ss_pred             EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          55 ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        55 ~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      ++-+...+.+.|.+|+..|-.            ++|+|++-
T Consensus       250 fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~  290 (603)
T KOG0458|consen  250 FESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAST  290 (603)
T ss_pred             EecCceeEEEecCCCccccchhhhccccccceEEEEEECCc
Confidence            556778999999999877765            88888653

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=92.94  E-value=0.018  Score=38.76  Aligned_cols=18  Identities=11%  Similarity=-0.001  Sum_probs=15.4

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        33 ~G~nGsGKSTLl~~l~Gl   50 (255)
T PRK11248         33 LGPSGCGKTTLLNLIAGF   50 (255)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            388899999999998854

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=92.94  E-value=0.018  Score=38.08  Aligned_cols=18  Identities=11%  Similarity=-0.018  Sum_probs=15.6

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        41 ~G~nGsGKSTLl~~l~Gl   58 (233)
T PRK11629         41 VGSSGSGKSTLLHLLGGL   58 (233)
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            388899999999998864

>KOG1533|consensus

Probab=92.84  E-value=0.061  Score=36.53  Aligned_cols=18  Identities=11%  Similarity=-0.110  Sum_probs=14.3

Q ss_pred             eeeEeccCCCcceeeeec
Q psy2967          17 VGFNMRKITKGNVTIWPV   34 (101)
Q Consensus        17 ~g~~vG~~~vGKtsl~~~   34 (101)
                      -.+.+|+||+||||...-
T Consensus         4 gqvVIGPPgSGKsTYc~g   21 (290)
T KOG1533|consen    4 GQVVIGPPGSGKSTYCNG   21 (290)
T ss_pred             ceEEEcCCCCCccchhhh
Confidence            345679999999998754

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=92.84  E-value=0.02  Score=36.50  Aligned_cols=18  Identities=11%  Similarity=-0.186  Sum_probs=15.4

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      .+|.+|+|||++..++..
T Consensus         4 i~G~pGsGKst~a~~La~   21 (194)
T cd01428           4 LLGPPGSGKGTQAERLAK   21 (194)
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            469999999999988764

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=92.83  E-value=0.02  Score=37.73  Aligned_cols=17  Identities=12%  Similarity=0.081  Sum_probs=14.8

Q ss_pred             ccCCCcceeeeeccccC
Q psy2967          22 RKITKGNVTIWPVPLSG   38 (101)
Q Consensus        22 G~~~vGKtsl~~~~~~~   38 (101)
                      |+.|+|||||++-+.+-
T Consensus        33 G~nGsGKSTLl~~l~G~   49 (230)
T TIGR03410        33 GRNGVGKTTLLKTLMGL   49 (230)
T ss_pred             CCCCCCHHHHHHHHhCC
Confidence            77899999999988854

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>KOG0082|consensus

Probab=92.83  E-value=0.37  Score=34.38  Aligned_cols=41  Identities=27%  Similarity=0.504  Sum_probs=32.0

Q ss_pred             CCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          44 MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        44 ~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      ..||.|+.-..+..++..+.++|.+||..-|.            |||.++++.
T Consensus       179 R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeY  231 (354)
T KOG0082|consen  179 RVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEY  231 (354)
T ss_pred             ccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhh
Confidence            45677777677888999999999999865444            888887754

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=92.83  E-value=0.066  Score=36.24  Aligned_cols=17  Identities=12%  Similarity=0.204  Sum_probs=14.4

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      ||+.|+||||++|-+.+
T Consensus        36 IGPNGAGKTTlfNlitG   52 (250)
T COG0411          36 IGPNGAGKTTLFNLITG   52 (250)
T ss_pred             ECCCCCCceeeeeeecc
Confidence            47779999999998874

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=92.83  E-value=0.02  Score=37.15  Aligned_cols=19  Identities=11%  Similarity=0.094  Sum_probs=15.8

Q ss_pred             eccCCCcceeeeeccccCc
Q psy2967          21 MRKITKGNVTIWPVPLSGQ   39 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~   39 (101)
                      +|+.|+|||||++-+.+-.
T Consensus        39 ~G~nGsGKSTLl~~l~G~~   57 (202)
T cd03233          39 LGRPGSGCSTLLKALANRT   57 (202)
T ss_pred             ECCCCCCHHHHHHHhcccC
Confidence            3888999999999988653

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=92.77  E-value=0.03  Score=38.35  Aligned_cols=17  Identities=18%  Similarity=0.130  Sum_probs=14.8

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      ||.+||||||+-+-++.
T Consensus        45 VGESG~GKSTlgr~i~~   61 (268)
T COG4608          45 VGESGCGKSTLGRLILG   61 (268)
T ss_pred             EecCCCCHHHHHHHHHc
Confidence            59999999999888774

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=92.77  E-value=0.027  Score=35.37  Aligned_cols=17  Identities=12%  Similarity=0.016  Sum_probs=15.1

Q ss_pred             ccCCCcceeeeeccccC
Q psy2967          22 RKITKGNVTIWPVPLSG   38 (101)
Q Consensus        22 G~~~vGKtsl~~~~~~~   38 (101)
                      |+.|+|||||++-+.+-
T Consensus        33 G~nGsGKSTLl~~i~G~   49 (163)
T cd03216          33 GENGAGKSTLMKILSGL   49 (163)
T ss_pred             CCCCCCHHHHHHHHhCC
Confidence            88899999999988864

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=92.74  E-value=0.02  Score=37.33  Aligned_cols=18  Identities=11%  Similarity=-0.012  Sum_probs=15.4

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        29 ~G~nGsGKSTLl~~l~G~   46 (214)
T cd03297          29 FGASGAGKSTLLRCIAGL   46 (214)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            488899999999988754

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF13479 AAA_24: AAA domain

Probab=92.73  E-value=0.04  Score=36.19  Aligned_cols=19  Identities=11%  Similarity=-0.108  Sum_probs=15.5

Q ss_pred             eeeEeccCCCcceeeeecc
Q psy2967          17 VGFNMRKITKGNVTIWPVP   35 (101)
Q Consensus        17 ~g~~vG~~~vGKtsl~~~~   35 (101)
                      .-+..|++|+|||+++..+
T Consensus         5 ~~lIyG~~G~GKTt~a~~~   23 (213)
T PF13479_consen    5 KILIYGPPGSGKTTLAASL   23 (213)
T ss_pred             EEEEECCCCCCHHHHHHhC
Confidence            3344599999999999888

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=92.73  E-value=0.027  Score=36.28  Aligned_cols=18  Identities=6%  Similarity=-0.121  Sum_probs=15.6

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        32 ~G~nGsGKSTLl~~l~G~   49 (195)
T PRK13541         32 KGANGCGKSSLLRMIAGI   49 (195)
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            388899999999998864

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=92.73  E-value=0.021  Score=36.45  Aligned_cols=18  Identities=6%  Similarity=0.015  Sum_probs=15.4

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        32 ~G~nGsGKSTLl~~l~G~   49 (182)
T cd03215          32 AGLVGNGQTELAEALFGL   49 (182)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            377899999999998864

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK14531 adenylate kinase; Provisional

Probab=92.71  E-value=0.027  Score=36.01  Aligned_cols=19  Identities=11%  Similarity=-0.125  Sum_probs=15.5

Q ss_pred             eEeccCCCcceeeeecccc
Q psy2967          19 FNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~   37 (101)
                      +.+|+||+||||+..++..
T Consensus         6 ~i~G~pGsGKsT~~~~la~   24 (183)
T PRK14531          6 LFLGPPGAGKGTQAARLCA   24 (183)
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            4469999999999887754

>smart00763 AAA_PrkA PrkA AAA domain

Probab=92.70  E-value=0.018  Score=41.00  Aligned_cols=18  Identities=11%  Similarity=0.219  Sum_probs=15.8

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|++|+|||||++.+...
T Consensus        84 ~GPPGsGKStla~~La~~  101 (361)
T smart00763       84 LGPVGGGKSSLVECLKRG  101 (361)
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999998753

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=92.68  E-value=0.038  Score=37.35  Aligned_cols=24  Identities=21%  Similarity=0.227  Sum_probs=17.8

Q ss_pred             eccCCCcceeeeeccccCcCCCCCCCccc
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQDMIPTVG   49 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~   49 (101)
                      ||..|+|||||++-+.+     .+.||.|
T Consensus        59 iG~NGaGKSTLlkliaG-----i~~Pt~G   82 (249)
T COG1134          59 IGHNGAGKSTLLKLIAG-----IYKPTSG   82 (249)
T ss_pred             ECCCCCcHHHHHHHHhC-----ccCCCCc
Confidence            36679999999988874     3456655

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=92.65  E-value=0.68  Score=33.11  Aligned_cols=55  Identities=24%  Similarity=0.437  Sum_probs=36.3

Q ss_pred             CCccceEEEEEec-CcEEEEEEeeCCCCccce------------EEEEECCCh----------hhHHHHHHHHHHHHH
Q psy2967          45 IPTVGFNMRKITK-GNVTIKVWDIGGQPRFRS------------IYMVDAADT----------DKLEASRNELHALIE   99 (101)
Q Consensus        45 ~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~------------i~v~d~~~~----------~sf~~~~~~~~~i~~   99 (101)
                      .+|.|+.-..+.. ++..+.++|.+||..-|.            |||+++++.          .++.+....+.++.+
T Consensus       220 ~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~  297 (389)
T PF00503_consen  220 VKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICN  297 (389)
T ss_dssp             ---SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHT
T ss_pred             CCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHh
Confidence            4566666556677 899999999999975554            888887643          335555555555543

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>PRK15453 phosphoribulokinase; Provisional

Probab=92.65  E-value=0.03  Score=38.73  Aligned_cols=22  Identities=14%  Similarity=0.086  Sum_probs=17.6

Q ss_pred             cceeeeEeccCCCcceeeeeccc
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPL   36 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~   36 (101)
                      .|++++ .|.+||||||+.+.+.
T Consensus         5 ~piI~I-tG~SGsGKTTva~~l~   26 (290)
T PRK15453          5 HPIIAV-TGSSGAGTTTVKRAFE   26 (290)
T ss_pred             CcEEEE-ECCCCCCHHHHHHHHH
Confidence            466664 6999999999988765

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=92.65  E-value=0.021  Score=37.93  Aligned_cols=17  Identities=12%  Similarity=-0.079  Sum_probs=15.2

Q ss_pred             ccCCCcceeeeeccccC
Q psy2967          22 RKITKGNVTIWPVPLSG   38 (101)
Q Consensus        22 G~~~vGKtsl~~~~~~~   38 (101)
                      |+.|+|||||++-+.+-
T Consensus        35 G~nGsGKSTLl~~l~G~   51 (242)
T PRK11124         35 GPSGAGKSSLLRVLNLL   51 (242)
T ss_pred             CCCCCCHHHHHHHHhCC
Confidence            88899999999998864

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=92.64  E-value=0.021  Score=37.52  Aligned_cols=18  Identities=11%  Similarity=0.091  Sum_probs=15.6

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        35 ~G~nGsGKSTLl~~l~G~   52 (229)
T cd03254          35 VGPTGAGKTTLINLLMRF   52 (229)
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            388899999999999864

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=92.61  E-value=0.021  Score=37.78  Aligned_cols=18  Identities=11%  Similarity=0.117  Sum_probs=15.5

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        33 ~G~nGsGKSTLl~~l~G~   50 (236)
T TIGR03864        33 LGPNGAGKSTLFSLLTRL   50 (236)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            388899999999998854

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK06696 uridine kinase; Validated

Probab=92.60  E-value=0.03  Score=36.96  Aligned_cols=17  Identities=12%  Similarity=-0.087  Sum_probs=14.6

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|.+|+|||||.+.+..
T Consensus        28 ~G~sgsGKSTlA~~L~~   44 (223)
T PRK06696         28 DGITASGKTTFADELAE   44 (223)
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999888764

>PRK10908 cell division protein FtsE; Provisional

Probab=92.58  E-value=0.022  Score=37.37  Aligned_cols=18  Identities=11%  Similarity=-0.003  Sum_probs=15.4

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++.+.+-
T Consensus        34 ~G~nGsGKSTLl~~l~G~   51 (222)
T PRK10908         34 TGHSGAGKSTLLKLICGI   51 (222)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            388899999999998854

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=92.58  E-value=0.031  Score=39.75  Aligned_cols=23  Identities=17%  Similarity=0.271  Sum_probs=18.2

Q ss_pred             cceeeeEeccCCCcceeeeecccc
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      ++++++ +|.+|+|||||+.+++.
T Consensus       205 ~~~~~~-~g~~~~GKtt~~~~l~~  227 (366)
T PRK14489        205 PPLLGV-VGYSGTGKTTLLEKLIP  227 (366)
T ss_pred             ccEEEE-ecCCCCCHHHHHHHHHH
Confidence            555654 69999999999988774

>TIGR00750 lao LAO/AO transport system ATPase

Probab=92.58  E-value=0.03  Score=38.70  Aligned_cols=23  Identities=17%  Similarity=0.086  Sum_probs=17.2

Q ss_pred             cceeeeEeccCCCcceeeeecccc
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      ..++++ +|.+|+|||||+..+..
T Consensus        34 ~~~i~i-~G~~G~GKttl~~~l~~   56 (300)
T TIGR00750        34 AHRVGI-TGTPGAGKSTLLEALGM   56 (300)
T ss_pred             ceEEEE-ECCCCCCHHHHHHHHHH
Confidence            445554 39999999999988553

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=92.58  E-value=0.022  Score=38.53  Aligned_cols=18  Identities=11%  Similarity=0.040  Sum_probs=15.4

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        44 ~G~NGsGKSTLlk~l~Gl   61 (257)
T PRK11247         44 VGRSGCGKSTLLRLLAGL   61 (257)
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            388899999999988854

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=92.56  E-value=0.022  Score=36.62  Aligned_cols=18  Identities=22%  Similarity=0.220  Sum_probs=15.6

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+.
T Consensus        39 ~G~nGsGKSTLl~~l~G~   56 (192)
T cd03232          39 MGESGAGKTTLLDVLAGR   56 (192)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            388899999999998854

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=92.56  E-value=0.022  Score=38.08  Aligned_cols=18  Identities=17%  Similarity=-0.077  Sum_probs=15.5

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        36 ~G~nGsGKSTLl~~l~G~   53 (253)
T PRK14267         36 MGPSGCGKSTLLRTFNRL   53 (253)
T ss_pred             ECCCCCCHHHHHHHHhcc
Confidence            488899999999988864

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=92.56  E-value=0.022  Score=36.18  Aligned_cols=17  Identities=12%  Similarity=0.167  Sum_probs=15.2

Q ss_pred             ccCCCcceeeeeccccC
Q psy2967          22 RKITKGNVTIWPVPLSG   38 (101)
Q Consensus        22 G~~~vGKtsl~~~~~~~   38 (101)
                      |+.|+|||||++.+.+-
T Consensus        35 G~nGsGKStLl~~l~G~   51 (178)
T cd03247          35 GRSGSGKSTLLQLLTGD   51 (178)
T ss_pred             CCCCCCHHHHHHHHhcc
Confidence            88899999999998864

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=92.55  E-value=0.051  Score=34.11  Aligned_cols=17  Identities=18%  Similarity=0.190  Sum_probs=15.1

Q ss_pred             ccCCCcceeeeeccccC
Q psy2967          22 RKITKGNVTIWPVPLSG   38 (101)
Q Consensus        22 G~~~vGKtsl~~~~~~~   38 (101)
                      |+-|+|||||++-+..+
T Consensus        32 GdLGAGKTtf~rgi~~~   48 (149)
T COG0802          32 GDLGAGKTTLVRGIAKG   48 (149)
T ss_pred             cCCcCChHHHHHHHHHH
Confidence            99999999999988753

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=92.55  E-value=0.022  Score=38.01  Aligned_cols=18  Identities=22%  Similarity=0.040  Sum_probs=15.5

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        35 ~G~nGsGKSTLl~~i~G~   52 (250)
T PRK14247         35 MGPSGSGKSTLLRVFNRL   52 (250)
T ss_pred             ECCCCCCHHHHHHHHhcc
Confidence            388899999999988854

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=92.51  E-value=0.023  Score=38.90  Aligned_cols=18  Identities=11%  Similarity=0.082  Sum_probs=15.6

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++.+.+-
T Consensus        43 ~G~nGsGKSTLl~~l~Gl   60 (289)
T PRK13645         43 IGTTGSGKSTMIQLTNGL   60 (289)
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            388899999999999854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	101
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		2e-27
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		1e-26
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		2e-26
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		1e-10
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		5e-10
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		5e-10
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		5e-10
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		5e-10
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		5e-10
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		4e-09
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		4e-09
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		4e-09
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		7e-09
4dcn_A	166	Crystal Structure Analysis Of The Arfaptin2 Bar Dom		2e-08
3aq4_A	184	Molecular Insights Into Plant Cell Proliferation Di		5e-08
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		9e-08
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		2e-07
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		7e-07
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		8e-07
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		1e-06
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		2e-06
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		3e-06
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		3e-06
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		3e-06
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		3e-06
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		4e-06
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		4e-06
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		5e-06
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		5e-06
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		6e-06
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		6e-06
1upt_A	171	Structure Of A Complex Of The Golgin-245 Grip Domai		8e-06
1ksj_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme		1e-05
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		2e-05
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		2e-05
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		2e-05
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		2e-05
1j2j_A	166	Crystal Structure Of Gga1 Gat N-terminal Region In		2e-05
2x77_A	189	Crystal Structure Of Leishmania Major Adp Ribosylat		3e-05
2h57_A	190	Crystal Structure Of Human Adp-Ribosylation Factor-		4e-05
4gok_B	169	The Crystal Structure Of Arl2gppnhp In Complex With		5e-05
4bas_A	199	Structure Of The Arl6 Bbs3 Small Gtpase From Trypan		6e-05
4goj_A	189	The Crystal Structure Of Full Length Arl3gppnhp In		1e-04
1fzq_A	181	Crystal Structure Of Murine Arl3-Gdp Length = 181		1e-04
3bh7_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		1e-04
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		1e-04
3bh6_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		4e-04

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score =  117 bits (292), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 64/113 (56%), Positives = 74/113 (65%), Gaps = 29/113 (25%)
Query: 1   MELTLSG-QFSQDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGN 59
           MELTL G Q+S                G  T   V  SGQFS+DMIPTVGFNMRK+TKGN
Sbjct: 23  MELTLVGLQYS----------------GKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGN 66
Query: 60  VTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNELHALIEK 100
           VTIK+WDIGGQPRFRS            +YM+DAAD +K+EASRNELH L++K
Sbjct: 67  VTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDK 119

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score =  114 bits (286), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/113 (56%), Positives = 74/113 (65%), Gaps = 29/113 (25%)
Query: 1   MELTLSG-QFSQDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGN 59
           MELTL G Q+S                G  T   V  SGQF++DMIPTVGFNMRKITKGN
Sbjct: 23  MELTLVGLQYS----------------GKTTFVNVIASGQFNEDMIPTVGFNMRKITKGN 66
Query: 60  VTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNELHALIEK 100
           VTIK+WDIGGQPRFRS            +YMVDAAD +K+EAS+NELH L++K
Sbjct: 67  VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK 119

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score =  114 bits (284), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/113 (56%), Positives = 74/113 (65%), Gaps = 29/113 (25%)
Query: 1   MELTLSG-QFSQDMIPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGN 59
           MELTL G Q+S                G  T   V  SGQF++DMIPTVGFNMRKITKGN
Sbjct: 32  MELTLVGLQYS----------------GKTTFVNVIASGQFNEDMIPTVGFNMRKITKGN 75
Query: 60  VTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNELHALIEK 100
           VTIK+WDIGGQPRFRS            +YMVDAAD +K+EAS+NELH L++K
Sbjct: 76  VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK 128

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 12/66 (18%)
Query: 45  IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
           IPTVGFN+  +T  NV   VWD+GGQ + R             I++VD AD D+++ +R 
Sbjct: 351 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 410
Query: 93  ELHALI 98
           ELH +I
Sbjct: 411 ELHRII 416

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 12/66 (18%)
Query: 45  IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
           IPTVGFN+  +T  NV   VWD+GGQ + R             I++VD AD D+++ +R 
Sbjct: 42  IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 101
Query: 93  ELHALI 98
           ELH +I
Sbjct: 102 ELHRII 107

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 12/66 (18%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
          IPTVGFN+  +T  NV   VWD+GGQ + R             I++VD AD D+++ +R 
Sbjct: 29 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 88
Query: 93 ELHALI 98
          ELH +I
Sbjct: 89 ELHRII 94

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 12/66 (18%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
          IPTVGFN+  +T  NV   VWD+GGQ + R             I++VD AD D+++ +R 
Sbjct: 29 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 88
Query: 93 ELHALI 98
          ELH +I
Sbjct: 89 ELHRII 94

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 12/66 (18%)
Query: 45  IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
           IPTVGFN+  +T  NV   VWD+GGQ + R             I++VD AD D+++ +R 
Sbjct: 41  IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 100
Query: 93  ELHALI 98
           ELH +I
Sbjct: 101 ELHRII 106

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 12/66 (18%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
          IPTVGFN+  +T  NV   VWD+GGQ + R             I++VD AD D+++ +R 
Sbjct: 29 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 88
Query: 93 ELHALI 98
          ELH +I
Sbjct: 89 ELHRII 94

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 12/66 (18%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
          IPTVGFN+  +T  NV   VWD+GG  + R             I++VD AD D+++ +R 
Sbjct: 31 IPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 90
Query: 93 ELHALI 98
          ELH +I
Sbjct: 91 ELHRII 96

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 12/66 (18%)
Query: 45  IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
           IPTVGFN+  +T  NV   VWD+GG  + R             I++VD AD D+++ +R 
Sbjct: 42  IPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 101
Query: 93  ELHALI 98
           ELH +I
Sbjct: 102 ELHRII 107

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 12/66 (18%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
          IPTVGFN+  +T  NV   VWD+GG  + R             I++VD AD D+++ +R 
Sbjct: 32 IPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 91
Query: 93 ELHALI 98
          ELH +I
Sbjct: 92 ELHRII 97

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 12/68 (17%)
Query: 45  IPTVGFNMRKITKGNVTIKVWDIGGQ----PRFRS--------IYMVDAADTDKLEASRN 92
           IPT+GFN+  +T  N+  +VWD+GGQ    P +R         IY+VD+ D D++  S++
Sbjct: 31  IPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS 90
Query: 93  ELHALIEK 100
           EL A++E+
Sbjct: 91  ELVAMLEE 98

>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 12/68 (17%)
Query: 45  IPTVGFNMRKITKGNVTIKVWDIGG----QPRFRS--------IYMVDAADTDKLEASRN 92
           IPT+GFN+  +T  N+  +VWD+GG    +P +R         IY+VD+ D D++  S++
Sbjct: 33  IPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS 92
Query: 93  ELHALIEK 100
           EL A++E+
Sbjct: 93  ELVAMLEE 100

>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 12/68 (17%)
Query: 45  IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
           IPT+GFN+  +   N++  VWD+GGQ + R             I++VD+ D D++  +R+
Sbjct: 49  IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD 108
Query: 93  ELHALIEK 100
           ELH ++ +
Sbjct: 109 ELHRMLNE 116

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 12/68 (17%)
Query: 45  IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
           IPT+GFN+  +   N++  VWD+GGQ + R             I++VD+ D ++++ +R 
Sbjct: 46  IPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDARE 105
Query: 93  ELHALIEK 100
           ELH +I +
Sbjct: 106 ELHRMINE 113

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 12/67 (17%)
Query: 46  PTVGFNMRKITKGNVTIKVWDIGGQ----PRFRS--------IYMVDAADTDKLEASRNE 93
           PT+GFN+  ++  N+ + VWD+GGQ    P +R         I++VD+ D D++  +  E
Sbjct: 48  PTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKE 107
Query: 94  LHALIEK 100
           LH ++++
Sbjct: 108 LHLMLQE 114

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 12/68 (17%)
Query: 45  IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
           IPT+GFN+  +   N+   VWD+GGQ + R             I++VD+ D ++++ S +
Sbjct: 58  IPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESAD 117
Query: 93  ELHALIEK 100
           EL  ++++
Sbjct: 118 ELQKMLQE 125

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 12/68 (17%)
Query: 45  IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
           IPT+GFN+  +   N++  VWD+GGQ + R             I++VD+ D D++  +R 
Sbjct: 46  IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEARE 105
Query: 93  ELHALIEK 100
           EL  ++ +
Sbjct: 106 ELMKMLNE 113

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 12/66 (18%)
Query: 45  IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
           IPT+GFN+  +   N++  VWD+GGQ + R             I++VD+ D +++  +R 
Sbjct: 194 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE 253
Query: 93  ELHALI 98
           EL  ++
Sbjct: 254 ELMRML 259

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 12/66 (18%)
Query: 45  IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
           IPT+GFN+  +   N+   VWD+GGQ R R             I++VD+ D ++++   +
Sbjct: 46  IPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVAD 105
Query: 93  ELHALI 98
           EL  ++
Sbjct: 106 ELQKML 111

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 12/68 (17%)
Query: 45  IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
           IPT+GFN+  +   N++  VWD+GGQ + R             I++VD+ D +++  +R 
Sbjct: 29  IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE 88
Query: 93  ELHALIEK 100
           EL  ++ +
Sbjct: 89  ELMRMLAE 96

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 12/66 (18%)
Query: 45  IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
           IPT+GFN+  +   N++  VWD+GGQ + R             I++VD+ D +++  +R 
Sbjct: 46  IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE 105
Query: 93  ELHALI 98
           EL  ++
Sbjct: 106 ELMRML 111

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 12/66 (18%)
Query: 45  IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
           IPT+GFN+  +   N++  VWD+GGQ + R             I++VD+ D +++  +R 
Sbjct: 45  IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE 104
Query: 93  ELHALI 98
           EL  ++
Sbjct: 105 ELMRML 110

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 12/68 (17%)
Query: 45  IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
           IPT+GFN+  +   N++  VWD+GGQ R RS            I++VD+ D  ++  +R 
Sbjct: 46  IPTIGFNVECVQYCNISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEARE 105
Query: 93  ELHALIEK 100
            +  ++ +
Sbjct: 106 VMQRMLNE 113

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 12/68 (17%)
Query: 45  IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
           IPT+GFN+  +   N++  VWD+GGQ R RS            I++VD+ D  ++  +R 
Sbjct: 46  IPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEARE 105
Query: 93  ELHALIEK 100
            +  ++ +
Sbjct: 106 VMQRMLNE 113

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 12/68 (17%)
Query: 45  IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
           IPT+GFN+  +   N++  VWD+GGQ R RS            I++VD+ D  ++  +R 
Sbjct: 29  IPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEARE 88
Query: 93  ELHALIEK 100
            +  ++ +
Sbjct: 89  VMQRMLNE 96

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 12/68 (17%)
Query: 45  IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
           IPT+GFN+  +   N++  VWD+GGQ R RS            I+++D+ D  ++  +R 
Sbjct: 46  IPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEARE 105
Query: 93  ELHALIEK 100
            +  ++ +
Sbjct: 106 VMQRMLNE 113

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 12/65 (18%)
Query: 46  PTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNE 93
           PT+GFN++ +      + +WD+GGQ   RS            I++VD+AD  +++  + E
Sbjct: 48  PTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRE 107
Query: 94  LHALI 98
           L +L+
Sbjct: 108 LQSLL 112

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 12/65 (18%)
Query: 46  PTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNE 93
           PT+GFN++ +      + +WD+GGQ   RS            I++VD+AD  +++  + E
Sbjct: 46  PTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRE 105
Query: 94  LHALI 98
           L +L+
Sbjct: 106 LQSLL 110

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 12/65 (18%)
Query: 46  PTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNE 93
           PT+GFN++ +      + +WD+GGQ   RS            I++VD+AD  +++  + E
Sbjct: 48  PTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRE 107
Query: 94  LHALI 98
           L +L+
Sbjct: 108 LQSLL 112

>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 12/60 (20%)
Query: 45 IPTVGFNMRKITKGNVTIKVWDIGG----QPRFRS--------IYMVDAADTDKLEASRN 92
          IPT+GFN+  +T  N+  +VWD+GG    +P +R         IY+VD+ D D++  S++
Sbjct: 36 IPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS 95

>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 12/65 (18%)
Query: 46  PTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNE 93
           PT+GFN++ +      + +WD+GGQ   RS            I++VD+AD  + +  + E
Sbjct: 48  PTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRXQDCQRE 107
Query: 94  LHALI 98
           L +L+
Sbjct: 108 LQSLL 112

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 16/76 (21%)
Query: 39  QFSQDMI----PTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82
           QFS + +    PT+G N+ +I   N    +WDIGGQ   RS            I +VD+ 
Sbjct: 40  QFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDST 99
Query: 83  DTDKLEASRNELHALI 98
           D +++  +R EL+ ++
Sbjct: 100 DRERISVTREELYKML 115

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 16/76 (21%)
Query: 39  QFSQDMI----PTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82
           QFS + +    PT+G N+ +I   N    +WDIGGQ   RS            I +VD+ 
Sbjct: 41  QFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDST 100
Query: 83  DTDKLEASRNELHALI 98
           D +++  +R EL+ ++
Sbjct: 101 DRERISVTREELYKML 116

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 16/76 (21%)
Query: 39  QFSQDMI----PTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82
           QFS + +    PT+G N+ +I   N    +WDIGGQ   RS            I +VD+ 
Sbjct: 35  QFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDST 94
Query: 83  DTDKLEASRNELHALI 98
           D +++  +R EL+ ++
Sbjct: 95  DRERISVTREELYKML 110

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 16/76 (21%)
Query: 39  QFSQDMI----PTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAA 82
           QFS + +    PT+G N+ +I   N    +WDIGGQ   RS            I +VD+ 
Sbjct: 35  QFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDST 94
Query: 83  DTDKLEASRNELHALI 98
           D +++  +R EL+ ++
Sbjct: 95  DRERISVTREELYKML 110

>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 12/68 (17%)
Query: 45  IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
           IPT+GFN+  +   N++  VWD+GG  + R             I++VD+ D +++  +R 
Sbjct: 31  IPTIGFNVETVEYKNISFTVWDVGGLDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE 90
Query: 93  ELHALIEK 100
           EL  ++ +
Sbjct: 91  ELMRMLAE 98

>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation Factor-Like 1. Length = 189

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 12/62 (19%)
Query: 51  NMRKITKGNVTIKVWDIGGQ----PRFRS--------IYMVDAADTDKLEASRNELHALI 98
           N+  +   N++ +VWD+GGQ    P +R         IY+VD+ D D++  +++EL+AL+
Sbjct: 57  NLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALL 116
Query: 99  EK 100
           ++
Sbjct: 117 DE 118

>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 42/70 (60%), Gaps = 12/70 (17%)
Query: 41  SQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLE 88
           SQ+++PT+GF++ K    +++  V+D+ GQ R+R+            I+++D++D  ++ 
Sbjct: 48  SQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMV 107
Query: 89  ASRNELHALI 98
            ++ EL  L+
Sbjct: 108 VAKEELDTLL 117

>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 12/65 (18%)
Query: 46 PTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNE 93
          PT+GFN++ +      + +WD+GG    RS            I++VD+AD  +++  + E
Sbjct: 31 PTLGFNIKTLEHRGFKLNIWDVGGLKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRE 90
Query: 94 LHALI 98
          L +L+
Sbjct: 91 LQSLL 95

>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 12/71 (16%)
Query: 41  SQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLE 88
           S+ +  TVG+N+    KG V   V+D+GG  +FR             I++VD++D  +L 
Sbjct: 44  SKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLC 103
Query: 89  ASRNELHALIE 99
             ++E+ A+++
Sbjct: 104 VVKSEIQAMLK 114

>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 12/59 (20%)
Query: 44  MIPTVGFNMRKITKGNVTIKVWDIGGQ----PRFRS--------IYMVDAADTDKLEAS 90
           + PT GFN++ +      + VWDIGGQ    P +RS        IY++D+AD  + E +
Sbjct: 45  ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEET 103

>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 12/59 (20%)
Query: 44  MIPTVGFNMRKITKGNVTIKVWDIGGQ----PRFRS--------IYMVDAADTDKLEAS 90
           + PT GFN++ +      + VWDIGGQ    P +RS        IY++D+AD  + E +
Sbjct: 44  ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEET 102

>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 12/59 (20%)
Query: 44 MIPTVGFNMRKITKGNVTIKVWDIGGQ----PRFRS--------IYMVDAADTDKLEAS 90
          + PT GFN++ +      + VWDIGGQ    P +RS        IY++D+AD  + E +
Sbjct: 32 ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEET 90

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 12/65 (18%)
Query: 46  PTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNE 93
           PT+G N+ +I   N    +WDIGGQ   RS            I +VD+ D ++L  ++ E
Sbjct: 46  PTIGSNVEEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEE 105
Query: 94  LHALI 98
           L+ ++
Sbjct: 106 LYRML 110

>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 12/59 (20%)
Query: 44 MIPTVGFNMRKITKGNVTIKVWDIGG----QPRFRS--------IYMVDAADTDKLEAS 90
          + PT GFN++ +      + VWDIGG    +P +RS        IY++D+AD  + E +
Sbjct: 32 ITPTQGFNIKSVQSQGFKLNVWDIGGLRKIRPYWRSYFENTDILIYVIDSADRKRFEET 90

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	101
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	2e-26
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	1e-21
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	2e-21
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	2e-21
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	1e-20
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	2e-20
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	6e-20
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	2e-19
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	4e-19
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	6e-19
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	1e-18
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	4e-18
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	5e-18
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-16
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	4e-16
2fh5_B	214	SR-beta, signal recognition particle receptor beta	2e-10
2ged_A	193	SR-beta, signal recognition particle receptor beta	1e-09
1nrj_B	218	SR-beta, signal recognition particle receptor beta	2e-09
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	7e-09
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	3e-08
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	2e-07
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	2e-07
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	3e-07
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	3e-07
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	3e-07
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	4e-07
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	4e-07
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	4e-07
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	4e-07
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	4e-07
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	4e-07
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	4e-07
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	5e-07
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	5e-07
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	5e-07
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	5e-07
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	5e-07
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	6e-07
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	6e-07
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	6e-07
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	7e-07
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	7e-07
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	7e-07
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	8e-07
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	8e-07
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	9e-07
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	9e-07
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-06
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	1e-06
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	1e-06
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	1e-06
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-06
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	1e-06
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	2e-06
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	2e-06
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	3e-06
3llu_A	196	RAS-related GTP-binding protein C; structural geno	7e-06
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	1e-05
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	1e-05
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	2e-05
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	4e-05
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	4e-05
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	6e-05
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	1e-04
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	1e-04
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	3e-04
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	4e-04

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 94.9 bits (237), Expect = 2e-26
 Identities = 53/76 (69%), Positives = 62/76 (81%), Gaps = 12/76 (15%)

Query: 37  SGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT 84
           SGQF++DMIPTVGFNMRKITKGNVTIK+WDIGGQPRFRS            +YMVDAAD 
Sbjct: 44  SGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQ 103

Query: 85  DKLEASRNELHALIEK 100
           +K+EAS+NELH L++K
Sbjct: 104 EKIEASKNELHNLLDK 119

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 82.6 bits (205), Expect = 1e-21
 Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 12/69 (17%)

Query: 44  MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASR 91
            IPT+GFN+  +T  N+  +VWD+GG    R             IY+VD+ D D++  S+
Sbjct: 35  TIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISK 94

Query: 92  NELHALIEK 100
           +EL A++E+
Sbjct: 95  SELVAMLEE 103

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 82.3 bits (204), Expect = 2e-21
 Identities = 20/76 (26%), Positives = 43/76 (56%), Gaps = 12/76 (15%)

Query: 36  LSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83
            S   SQ+++PT+GF++ K    +++  V+D+ GQ R+R+            I+++D++D
Sbjct: 43  PSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSD 102

Query: 84  TDKLEASRNELHALIE 99
             ++  ++ EL  L+ 
Sbjct: 103 RLRMVVAKEELDTLLN 118

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 82.2 bits (204), Expect = 2e-21
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 13/74 (17%)

Query: 38  GQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTD 85
            + +  + PT      ++  GN+    +D+GG  + R             +++VDAAD +
Sbjct: 46  DRLAT-LQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPE 104

Query: 86  KLEASRNELHALIE 99
           + + +R EL AL  
Sbjct: 105 RFDEARVELDALFN 118

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 80.4 bits (199), Expect = 1e-20
 Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 12/68 (17%)

Query: 44  MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASR 91
            +PTVG N+  +   N++ +VWD+GGQ   R             IY+VD+ D D++  ++
Sbjct: 50  TVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAK 109

Query: 92  NELHALIE 99
           +EL+AL++
Sbjct: 110 HELYALLD 117

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 80.0 bits (198), Expect = 2e-20
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 12/67 (17%)

Query: 45  IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
           +PT+     ++T   +T   +D+GG  + R             +++VD AD ++L  S+ 
Sbjct: 54  VPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKE 113

Query: 93  ELHALIE 99
           EL +L+ 
Sbjct: 114 ELDSLMT 120

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 78.4 bits (194), Expect = 6e-20
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 12/68 (17%)

Query: 44  MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASR 91
           + PT GFN++ +      + VWDIGGQ + R             IY++D+AD  + E + 
Sbjct: 44  ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETG 103

Query: 92  NELHALIE 99
            EL  L+E
Sbjct: 104 QELTELLE 111

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 76.5 bits (189), Expect = 2e-19
 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 12/67 (17%)

Query: 45 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
          IPT+GFN+  +   N++  VWD+GGQ + R             I++VD+ D +++  +R 
Sbjct: 29 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE 88

Query: 93 ELHALIE 99
          EL  ++ 
Sbjct: 89 ELMRMLA 95

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 76.1 bits (188), Expect = 4e-19
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 12/69 (17%)

Query: 43  DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEAS 90
              PT+GFN+  ++  N+ + VWD+GGQ   R             I++VD+ D D++  +
Sbjct: 45  TTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTA 104

Query: 91  RNELHALIE 99
             ELH +++
Sbjct: 105 SKELHLMLQ 113

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 76.1 bits (188), Expect = 6e-19
 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 12/76 (15%)

Query: 36  LSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD 83
            +G+    + PT+GFN++ +      + +WD+GGQ   RS            I++VD+AD
Sbjct: 38  FNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 97

Query: 84  TDKLEASRNELHALIE 99
             +++  + EL +L+ 
Sbjct: 98  RQRMQDCQRELQSLLV 113

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 75.0 bits (185), Expect = 1e-18
 Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 12/67 (17%)

Query: 45  IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
           IPT+GFN+  +   N+   VWD+GGQ + R             I++VD+ D ++++ S +
Sbjct: 58  IPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESAD 117

Query: 93  ELHALIE 99
           EL  +++
Sbjct: 118 ELQKMLQ 124

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 73.8 bits (182), Expect = 4e-18
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 12/67 (17%)

Query: 45  IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
            PT+G N+ +I   N    +WDIGGQ   RS            I +VD+ D +++  +R 
Sbjct: 45  SPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTRE 104

Query: 93  ELHALIE 99
           EL+ ++ 
Sbjct: 105 ELYKMLA 111

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 73.4 bits (181), Expect = 5e-18
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 12/67 (17%)

Query: 45  IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
            PT+G N+ +I   N    +WDIGGQ   RS            I +VD+ D +++  +R 
Sbjct: 50  SPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTRE 109

Query: 93  ELHALIE 99
           EL+ ++ 
Sbjct: 110 ELYKMLA 116

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 70.3 bits (172), Expect = 4e-16
 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 12/67 (17%)

Query: 45  IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRN 92
           IPT+GFN+  +   N++  VWD+GGQ + R             I++VD+ D +++  +R 
Sbjct: 194 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE 253

Query: 93  ELHALIE 99
           EL  ++ 
Sbjct: 254 ELMRMLA 260

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 54.0 bits (130), Expect = 2e-10
 Identities = 8/73 (10%), Positives = 25/73 (34%), Gaps = 17/73 (23%)

Query: 45  IPTVGFNMRKITKGN---VTIKVWDIGGQPRFRS-------------IYMVDAADTDK-L 87
             ++  +       N    ++ + D+ G    R              +++VD+A   + +
Sbjct: 36  QTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREV 95

Query: 88  EASRNELHALIEK 100
           +     L+ ++  
Sbjct: 96  KDVAEFLYQVLID 108

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 51.3 bits (123), Expect = 1e-09
 Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 18/71 (25%)

Query: 45  IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS----------------IYMVDAA-DTDKL 87
           + +    +         + + D  G  + R                 I+MVD+  D  KL
Sbjct: 77  VVSQE-PLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKL 135

Query: 88  EASRNELHALI 98
             +   L  ++
Sbjct: 136 TTTAEFLVDIL 146

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 51.3 bits (123), Expect = 2e-09
 Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 18/71 (25%)

Query: 45  IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS----------------IYMVDAA-DTDKL 87
           + +    +         + + D  G  + R                 I+MVD+  D  KL
Sbjct: 41  VVSQE-PLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKL 99

Query: 88  EASRNELHALI 98
             +   L  ++
Sbjct: 100 TTTAEFLVDIL 110

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 49.7 bits (119), Expect = 7e-09
 Identities = 11/74 (14%), Positives = 28/74 (37%), Gaps = 18/74 (24%)

Query: 45  IPTVGFNMRKITKG-----NVTIKVWDIGGQPRFRS------------IYMVDAADTDKL 87
             T+ F+   +  G          ++ + GQ  + +            +++ D+A  ++L
Sbjct: 54  ERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAP-NRL 112

Query: 88  EASRNELHALIEKL 101
            A+   +  + E L
Sbjct: 113 RANAESMRNMRENL 126

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score = 47.5 bits (114), Expect = 3e-08
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 5/44 (11%)

Query: 38 GQFSQDMIPTVG--FNMRKIT-KGNVTIK--VWDIGGQPRFRSI 76
            F +    T+G  F +R+IT  GN+ +   +WDIGGQ     +
Sbjct: 29 ETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKM 72

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score = 45.3 bits (108), Expect = 2e-07
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 4/43 (9%)

Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
           +F  D   T+G  F  R I      IK  +WD  GQ RFR++
Sbjct: 38 KKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAV 80

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score = 45.3 bits (108), Expect = 2e-07
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
           +F+ +   T+G  F  R I     TIK  +WD  G  R+R+I
Sbjct: 52 NEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAI 94

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score = 45.2 bits (108), Expect = 3e-07
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
           +F  D   T+G  F  + I  G   +K  +WD  GQ RFRS+
Sbjct: 33 KKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSV 75

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score = 45.3 bits (108), Expect = 3e-07
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
           +F QD   T+G  F  R +  G  T+K  +WD  GQ RFRS+
Sbjct: 48 NKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSV 90

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score = 45.1 bits (107), Expect = 3e-07
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
           +F+ D   T+G  F  R +      IK  +WD  GQ R+R+I
Sbjct: 36 NEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAI 78

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score = 44.9 bits (107), Expect = 4e-07
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)

Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
           +FS D   T+G  F+ R +  G   +K  +WD  G  R+R+I
Sbjct: 48 NEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAI 90

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score = 44.4 bits (106), Expect = 4e-07
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
           +F+   I T+G  F  +K+  G   +   +WD  GQ RF ++
Sbjct: 29 NKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHAL 71

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score = 44.5 bits (106), Expect = 4e-07
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)

Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
           +F+   I T+G  F ++ +      +K  +WD  GQ RFR+I
Sbjct: 26 DKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI 68

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score = 45.0 bits (107), Expect = 4e-07
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
           +F +++  T+G  F M+ +          +WD  GQ RFRSI
Sbjct: 51 NEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSI 93

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score = 45.0 bits (107), Expect = 4e-07
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
           +F+ +   T+G  F  R I     TIK  +WD  GQ R+R I
Sbjct: 28 NEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRI 70

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score = 44.9 bits (107), Expect = 4e-07
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
            F  ++  T+G  F ++ I+      K  +WD  GQ RFR++
Sbjct: 38 DTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTL 80

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score = 44.4 bits (106), Expect = 4e-07
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
           QF +    T+G  F  + +   + T+K  +WD  GQ R+ S+
Sbjct: 35 DQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL 77

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score = 44.5 bits (106), Expect = 5e-07
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 4/43 (9%)

Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
           +F      T+G  F  R +      IK  +WD  GQ  FRSI
Sbjct: 44 KRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSI 86

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score = 44.6 bits (106), Expect = 5e-07
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
            ++ D I T+G  F ++ +     T+K  +WD  GQ RFR+I
Sbjct: 31 DTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI 73

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score = 44.5 bits (106), Expect = 5e-07
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
            F+   I T+G  F +R I      IK  +WD  GQ RFR+I
Sbjct: 31 DAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI 73

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score = 44.0 bits (105), Expect = 5e-07
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)

Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
          GQF +    T+G  F  + +   + T+K  +WD  GQ R+ S+
Sbjct: 29 GQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL 71

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score = 44.5 bits (106), Expect = 5e-07
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
            FS   I T+G  F +R +      +K  +WD  GQ RFR+I
Sbjct: 32 NTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTI 74

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score = 44.5 bits (106), Expect = 6e-07
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 4/43 (9%)

Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
            F +    TVG  F ++ +      I+  +WD  GQ RF SI
Sbjct: 49 DTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSI 91

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score = 44.6 bits (106), Expect = 6e-07
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 4/43 (9%)

Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
          G F      T+G  F ++ +      +K  +WD  GQ RFRSI
Sbjct: 49 GLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSI 91

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score = 44.6 bits (106), Expect = 6e-07
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 4/43 (9%)

Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
          G FS+    T+G  F M+ +      +K  +WD  GQ RFR+I
Sbjct: 52 GAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTI 94

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score = 44.2 bits (105), Expect = 7e-07
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 4/43 (9%)

Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
            F+   + TVG  F ++ + +    +K  +WD  GQ R+R+I
Sbjct: 46 DTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTI 88

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 44.0 bits (104), Expect = 7e-07
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 4/43 (9%)

Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
            F+++  PT+G  F  +++T    T+K  +WD  GQ RF S+
Sbjct: 26 NDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASL 68

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score = 44.0 bits (105), Expect = 7e-07
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 4/43 (9%)

Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
            F  ++ PT+G  F  + +   N   K  +WD  G  RFR++
Sbjct: 29 DSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRAL 71

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score = 44.1 bits (105), Expect = 8e-07
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
            F  ++ PT+G  F  + +  GN   K  +WD  GQ RF S+
Sbjct: 46 DHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSL 88

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score = 43.7 bits (104), Expect = 8e-07
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
            F+   + TVG  F ++ + + +  IK  +WD  GQ R+R+I
Sbjct: 45 DSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTI 87

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score = 43.8 bits (104), Expect = 9e-07
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)

Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
            F+   + TVG  F ++ I + +  IK  +WD  G  R+R+I
Sbjct: 31 DSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTI 73

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score = 43.8 bits (104), Expect = 9e-07
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
            +++  I T+G  F +R I     TIK  +WD  GQ RFR+I
Sbjct: 56 DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 98

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score = 43.8 bits (104), Expect = 1e-06
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
            +++  I T+G  F +R I     TIK  +WD  GQ RFR+I
Sbjct: 39 DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 81

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score = 43.7 bits (104), Expect = 1e-06
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 4/43 (9%)

Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
           +F   +  T+G  F  + +      +   +WD  GQ RFRS+
Sbjct: 30 NKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSL 72

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score = 43.9 bits (104), Expect = 1e-06
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)

Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
           +F+   I T+G  F ++ +      +K  +WD  GQ RFR+I
Sbjct: 43 DKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTI 85

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score = 43.9 bits (104), Expect = 1e-06
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 4/43 (9%)

Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
            F      T+G  F  + +   + T++  +WD  G  RFRS+
Sbjct: 39 DSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSL 81

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score = 43.3 bits (103), Expect = 1e-06
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 4/43 (9%)

Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
            F      T+G  F  + +   + T++  +WD  GQ RFRS+
Sbjct: 37 DSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 79

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score = 43.5 bits (103), Expect = 1e-06
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 36 LSGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
          L+G+F +  + T+G   +          IK  VWD  GQ +F  +
Sbjct: 36 LTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGL 80

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score = 43.0 bits (102), Expect = 2e-06
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
           +FS     T+G  F  +++   +  +   +WD  GQ RF+S+
Sbjct: 31 KKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL 73

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score = 42.7 bits (101), Expect = 2e-06
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 5/46 (10%)

Query: 36 LSGQFSQDMIPTVG---FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
          L G+F ++   TVG     +  +      IK  VWD  GQ +   +
Sbjct: 32 LDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVL 77

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score = 42.1 bits (100), Expect = 3e-06
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)

Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
          G F++D   T+G  F  R+I   +  ++  +WD  GQ  F +I
Sbjct: 28 GIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAI 70

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 41.5 bits (97), Expect = 7e-06
 Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 18/73 (24%)

Query: 45  IPTVGFNMRKIT-KGNVTIKVWDIGGQPRFRS---------------IYMVDAADTDKLE 88
             T       I+    V  ++WD  GQ  F                 IY++DA   D   
Sbjct: 53  ESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDA--QDDYM 110

Query: 89  ASRNELHALIEKL 101
            +   LH  + K 
Sbjct: 111 EALTRLHITVSKA 123

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score = 40.6 bits (96), Expect = 1e-05
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 5/44 (11%)

Query: 38 GQFSQD-MIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSI 76
          G F     I TVG  F  + +    V +K  +WD  GQ RFRS+
Sbjct: 33 GAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSV 76

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score = 40.7 bits (96), Expect = 1e-05
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 4/42 (9%)

Query: 38 GQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRS 75
          G+F      T+G  F  R +      IK  +WD  GQ RFR 
Sbjct: 43 GRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRK 84

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score = 39.9 bits (94), Expect = 2e-05
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%)

Query: 38 GQFSQDMIPTVG--FNMRKIT-KGNVTIK--VWDIGGQPRFRSI 76
           ++SQ    T+G  F  +++T  G+      VWD  GQ RF+S+
Sbjct: 31 DKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSL 74

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score = 39.6 bits (93), Expect = 4e-05
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 14/53 (26%)

Query: 38  GQFSQDMIPTVG--FNMRKIT----------KGNVTIK--VWDIGGQPRFRSI 76
            +F+   I TVG  F  +++                +   +WD  GQ RFRS+
Sbjct: 48  NKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL 100

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 39.6 bits (92), Expect = 4e-05
 Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 19/76 (25%)

Query: 44  MIPTVGFNMRKIT-KGNVTIKVWDIGGQPRFRS-----------------IYMVDAADTD 85
           +  T+      +   GN+T+ +WD GGQ  F                   I++ D   T+
Sbjct: 35  LGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTE 94

Query: 86  KLEASRNELHALIEKL 101
            L+         +++L
Sbjct: 95  VLKDIE-IFAKALKQL 109

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score = 38.8 bits (91), Expect = 6e-05
 Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 6/46 (13%)

Query: 37 SGQFSQDMIPTVG--FNMRKITKGNVTIKV----WDIGGQPRFRSI 76
            +F +D   T G    +  +T  + T+ V     D  G   ++  
Sbjct: 44 GSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQ 89

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score = 38.0 bits (89), Expect = 1e-04
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 14/53 (26%)

Query: 38 GQFSQDMIPTVG--FNMRKIT----------KGNVTIK--VWDIGGQPRFRSI 76
          G+F+   I TVG  F  +++                I   +WD  G  RFRS+
Sbjct: 34 GKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 38.0 bits (88), Expect = 1e-04
 Identities = 10/60 (16%), Positives = 15/60 (25%), Gaps = 15/60 (25%)

Query: 38  GQFSQDMIPTVGFNMRKIT------------KGNVTIKVWDIGGQPRFRSI---YMVDAA 82
             F      T G N+                        WD GGQ    +    +M  ++
Sbjct: 64  ETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSS 123

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 36.6 bits (85), Expect = 3e-04
 Identities = 12/48 (25%), Positives = 15/48 (31%), Gaps = 9/48 (18%)

Query: 38 GQFSQDM--IPTVG--FNMRKIT---KGNVTIK--VWDIGGQPRFRSI 76
           + S       TVG       I    K    +   VWD  G+  F S 
Sbjct: 25 TKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYST 72

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score = 36.3 bits (84), Expect = 4e-04
 Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 10/80 (12%)

Query: 7   GQFSQDMIPTVG--FNMRKITKGNVTI--------WPVPLSGQFSQDMIPTVGFNMRKIT 56
             F ++   T+G  F    +   ++ I             S     ++I T   N     
Sbjct: 30  DTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNEN 89

Query: 57  KGNVTIKVWDIGGQPRFRSI 76
             N+   +WD  GQ R+ SI
Sbjct: 90  LCNIKFDIWDTAGQERYASI 109

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	101
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.89
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.8
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.78
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.77
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.77
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.77
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.77
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.76
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.76
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.76
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.76
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.76
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.76
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.76
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.76
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.76
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.75
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.75
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.75
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.75
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.75
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.74
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.74
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.74
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.74
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.74
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.74
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.74
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.74
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.74
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.74
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.74
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.74
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.73
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.73
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.73
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.73
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.73
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.73
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.73
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.73
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.73
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.73
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.72
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.72
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.72
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.72
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.72
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.72
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.72
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.72
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.72
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.72
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.72
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.72
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.72
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.72
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.71
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.71
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.71
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.71
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.71
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.71
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.71
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.71
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.71
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.71
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.71
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.7
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.7
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.7
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.7
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.7
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.7
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.7
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.69
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.69
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.69
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.69
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.69
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.69
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.68
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.68
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.68
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.68
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.68
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.68
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.68
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.67
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.67
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.67
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.67
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.66
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.66
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.66
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.64
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.64
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.63
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.62
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.62
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.42
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.61
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.57
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.55
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.51
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.49
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.48
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.47
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.43
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.4
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.39
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.38
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.38
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.37
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.36
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.29
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.28
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.27
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.24
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.24
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.23
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.22
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.2
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.19
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.18
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.17
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.17
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.15
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.14
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.14
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.12
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.11
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.11
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.1
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.08
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.08
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.05
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.03
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.0
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	98.99
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	98.97
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	98.97
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	98.97
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	98.96
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	98.95
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	98.93
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	98.93
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	98.92
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	98.91
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	98.9
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	98.88
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	98.86
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	98.86
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	98.84
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	98.84
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.84
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	98.83
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.83
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	98.83
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	98.83
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	98.82
1wb1_A	482	Translation elongation factor SELB; selenocysteine	98.81
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	98.79
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	98.79
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	98.78
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	98.77
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	98.77
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	98.76
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	98.76
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	98.76
1wxq_A	397	GTP-binding protein; structural genomics, riken st	98.76
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	98.75
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	98.75
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	98.75
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	98.73
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	98.72
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	98.71
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	98.7
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	98.67
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	98.65
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	98.64
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	98.64
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	98.62
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	98.58
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	98.56
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	98.55
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	98.5
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.49
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.49
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.49
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	98.47
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	98.35
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	98.33
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	98.3
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	98.25
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.15
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.02
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	97.98
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	97.9
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	97.69
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	97.42
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.42
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.28
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.21
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	97.09
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	96.72
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	96.66
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	96.56
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	96.51
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	96.42
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	96.33
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	96.21
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	96.1
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	95.92
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	95.82
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	95.81
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	95.74
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	95.64
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	95.56
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	95.55
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	95.49
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	95.44
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	95.36
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	95.35
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	95.29
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	95.23
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	95.16
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	95.12
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	95.09
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	95.08
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	95.07
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	95.02
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	94.96
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	94.94
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	94.89
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	94.87
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	94.8
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	94.8
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	94.79
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	94.75
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	94.75
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	94.75
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	94.66
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	94.66
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	94.62
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	94.6
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	94.59
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	94.58
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	94.57
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	94.56
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	94.52
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	94.49
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	94.48
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	94.46
4a74_A	231	DNA repair and recombination protein RADA; hydrola	94.43
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	94.4
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	94.4
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	94.37
1b0u_A	262	Histidine permease; ABC transporter, transport pro	94.34
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	94.32
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	94.31
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	94.27
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	94.23
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	94.22
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	94.21
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	94.21
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	94.21
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	94.18
1g6h_A	257	High-affinity branched-chain amino acid transport	94.18
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	94.13
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	94.12
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	94.1
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	94.09
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	94.07
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	94.06
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	94.04
1sgw_A	214	Putative ABC transporter; structural genomics, P p	94.02
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	94.01
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	94.0
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	93.96
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	93.96
1ji0_A	240	ABC transporter; ATP binding protein, structural g	93.95
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	93.93
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	93.92
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	93.91
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	93.86
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	93.85
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	93.83
2ghi_A	260	Transport protein; multidrug resistance protein, M	93.82
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	93.79
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	93.77
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	93.75
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	93.74
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	93.73
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	93.72
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	93.69
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	93.67
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	93.65
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	93.64
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	93.62
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	93.62
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	93.62
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	93.59
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	93.55
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	93.52
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	93.52
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	93.47
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	93.44
2vli_A	183	Antibiotic resistance protein; transferase, tunica	93.44
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	93.44
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	93.33
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	93.27
2eyu_A	261	Twitching motility protein PILT; pilus retraction	93.27
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	93.25
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	93.25
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	93.24
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	93.24
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	93.22
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	93.21
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	93.2
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	93.17
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	93.16
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	93.15
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	93.09
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	93.07
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	93.06
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	93.06
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	93.04
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	93.02
3bos_A	242	Putative DNA replication factor; P-loop containing	93.0
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	92.98
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	92.97
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	92.96
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	92.95
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	92.95
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	92.87
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	92.87
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	92.86
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	92.84
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	92.82
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	92.81
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	92.78
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	92.74
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	92.74
2cvh_A	220	DNA repair and recombination protein RADB; filamen	92.74
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	92.72
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	92.72
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	92.68
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	92.66
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	92.66
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	92.53
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	92.52
2chg_A	226	Replication factor C small subunit; DNA-binding pr	92.51
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	92.5
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	92.49
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	92.49
1via_A	175	Shikimate kinase; structural genomics, transferase	92.48
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	92.47
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	92.43
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	92.42
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	92.42
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	92.41
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	92.41
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	92.4
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	92.36
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	92.34
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	92.3
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	92.27
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	92.26
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	92.23
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	92.21
2fna_A	357	Conserved hypothetical protein; structural genomic	92.2
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	92.14
3kta_A	182	Chromosome segregation protein SMC; structural mai	92.05
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	92.02
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	91.99
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	91.95
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	91.94
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	91.93
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	91.82
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	91.68
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	91.68
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	91.67
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	91.66
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	91.65
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	91.64
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	91.61
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	91.59
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	91.55
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	91.5
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	91.49
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	91.49
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	91.41
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	91.41
2ewv_A	372	Twitching motility protein PILT; pilus retraction	91.38
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	91.36
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	91.32
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	91.25
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	91.23
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	91.21
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	91.2
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	91.2
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	91.13
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	91.1
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	91.09
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	91.06
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	91.03
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	90.98
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	90.96
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	90.77
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	90.75
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	90.73
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	90.67
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	90.6
3co5_A	143	Putative two-component system transcriptional RES	90.6
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	90.56
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	90.5
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	90.49
2og2_A	359	Putative signal recognition particle receptor; nuc	90.48
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	90.48
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	90.43
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	90.42
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	90.41
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	90.39
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	90.38
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	90.37
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	90.37
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	90.36
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	90.34
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	90.33
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	90.31
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	90.29
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	90.24
1p9r_A	418	General secretion pathway protein E; bacterial typ	90.23
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	90.2
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	90.18
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	90.09
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	90.08
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	89.97
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	89.92
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	89.86
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	89.79
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	89.79
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	89.79
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	89.74
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	89.72
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	89.69
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	89.62
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	89.6
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	89.57
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	89.56
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	89.55
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	89.55
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	89.54
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	89.39
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	89.35
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	89.34
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	89.31
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	89.28
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	89.22
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	89.19
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	89.15
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	89.13
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	89.11
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	89.09
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	89.02
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	89.0
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	88.99
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	88.98
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	88.96
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	88.93
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	88.89
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	88.88
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	88.86
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	88.79
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	88.7
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	88.65
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	88.6
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	88.59
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	88.53
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	88.53
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	88.47
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	88.36
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	88.18
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	88.04
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	87.85
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	87.8
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	87.79
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	87.76
1tue_A	212	Replication protein E1; helicase, replication, E1E	87.65
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	87.65
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	87.63
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	87.61
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	87.47
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	87.47
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	87.36
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	87.14
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	87.1
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	87.09
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	87.05

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.89  E-value=1.3e-23  Score=137.06  Aligned_cols=81  Identities=15%  Similarity=0.385  Sum_probs=63.2

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|++|||||||++||+.+.|.+.+.||++.++..    +.+..+.++||||+|+++|+.            ++|||++
T Consensus        17 vlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~   96 (216)
T 4dkx_A           17 VFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDIT   96 (216)
T ss_dssp             EEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETT
T ss_pred             EEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecc
Confidence            345999999999999999999999999999977532    456679999999999999887            9999999


Q ss_pred             ChhhHHHHHHHHHHHHH
Q psy2967          83 DTDKLEASRNELHALIE   99 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~   99 (101)
                      +++||+++..|+.++.+
T Consensus        97 ~~~Sf~~i~~~~~~i~~  113 (216)
T 4dkx_A           97 NVNSFQQTTKWIDDVRT  113 (216)
T ss_dssp             CHHHHHTHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHH
Confidence            99999999999998865

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.80  E-value=2.2e-19  Score=113.68  Aligned_cols=81  Identities=31%  Similarity=0.527  Sum_probs=71.6

Q ss_pred             eEeccCCCcceeeeeccccCcCCC-CCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChh
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQ-DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTD   85 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~   85 (101)
                      +.+|++|||||||+++|..+.+.. .+.||++.....++...+.+.+||++|+++++.            |+|||+++++
T Consensus        21 ~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~  100 (199)
T 4bas_A           21 VMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHL  100 (199)
T ss_dssp             EEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGG
T ss_pred             EEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHH
Confidence            346999999999999999999998 889999988888889999999999999998766            9999999999


Q ss_pred             hHHHHHHHHHHHHH
Q psy2967          86 KLEASRNELHALIE   99 (101)
Q Consensus        86 sf~~~~~~~~~i~~   99 (101)
                      +|+++..|+.++++
T Consensus       101 s~~~~~~~~~~~~~  114 (199)
T 4bas_A          101 RLCVVKSEIQAMLK  114 (199)
T ss_dssp             GHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998865

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.78  E-value=5.4e-19  Score=111.88  Aligned_cols=81  Identities=14%  Similarity=0.165  Sum_probs=67.9

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce-----------EEEEECCCh
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS-----------IYMVDAADT   84 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~-----------i~v~d~~~~   84 (101)
                      +.+|++|||||||++++..+.+...+.||++..+..   +++..+.+.+||++|+++++.           ++|||++++
T Consensus        25 ~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ilv~d~~~~  104 (187)
T 3c5c_A           25 AILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNCERYLNWAHAFLVVYSVDSR  104 (187)
T ss_dssp             EEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCTHHHHTTCSEEEEEEETTCH
T ss_pred             EEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhHHHHHhhCCEEEEEEECCCH
Confidence            346999999999999999999998999999977632   455678999999999988764           999999999


Q ss_pred             hhHHHHHHHHHHHHH
Q psy2967          85 DKLEASRNELHALIE   99 (101)
Q Consensus        85 ~sf~~~~~~~~~i~~   99 (101)
                      ++|+++..|+.++.+
T Consensus       105 ~s~~~~~~~~~~i~~  119 (187)
T 3c5c_A          105 QSFDSSSSYLELLAL  119 (187)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998875

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.77  E-value=7.5e-19  Score=111.08  Aligned_cols=80  Identities=69%  Similarity=1.061  Sum_probs=73.2

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKL   87 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf   87 (101)
                      .+|++|||||||++++..+++...+.||++.++..+....+.+.+||++|+++++.            ++|||++++++|
T Consensus        27 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~  106 (188)
T 1zd9_A           27 LVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKI  106 (188)
T ss_dssp             EECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGH
T ss_pred             EECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHH
Confidence            35999999999999999999988899999999888888899999999999987665            999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2967          88 EASRNELHALIE   99 (101)
Q Consensus        88 ~~~~~~~~~i~~   99 (101)
                      +++..|+.++++
T Consensus       107 ~~~~~~~~~~~~  118 (188)
T 1zd9_A          107 EASKNELHNLLD  118 (188)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999988865

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.77  E-value=6.3e-19  Score=113.90  Aligned_cols=81  Identities=15%  Similarity=0.347  Sum_probs=69.7

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      .+|+++||||||+++|..+.+...+.||++..+..   +++..+.+.+||++|+++++.            |+|||++++
T Consensus        32 vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~  111 (214)
T 3q3j_B           32 LVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRP  111 (214)
T ss_dssp             EECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCT
T ss_pred             EECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCH
Confidence            35999999999999999999999999999987753   456779999999999998765            999999999


Q ss_pred             hhHHH-HHHHHHHHHHh
Q psy2967          85 DKLEA-SRNELHALIEK  100 (101)
Q Consensus        85 ~sf~~-~~~~~~~i~~~  100 (101)
                      ++|++ +..|+.++.+.
T Consensus       112 ~s~~~~~~~~~~~i~~~  128 (214)
T 3q3j_B          112 ETVDSALKKWRTEILDY  128 (214)
T ss_dssp             HHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999 68899887653

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.77  E-value=5.5e-19  Score=111.47  Aligned_cols=81  Identities=32%  Similarity=0.596  Sum_probs=71.1

Q ss_pred             eeEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChh
Q psy2967          18 GFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTD   85 (101)
Q Consensus        18 g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~   85 (101)
                      -+.+|+++||||||++++..+++. .+.||++.....+..+++.+.+||++|+++++.            ++|||+++++
T Consensus        25 i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~  103 (189)
T 2x77_A           25 VLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRD  103 (189)
T ss_dssp             EEEEEETTSSHHHHHHHTCCSCCE-EECSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCT
T ss_pred             EEEECCCCCCHHHHHHHHHcCCCC-CcCCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHH
Confidence            334699999999999999988876 578899988777777899999999999988765            9999999999


Q ss_pred             hHHHHHHHHHHHHH
Q psy2967          86 KLEASRNELHALIE   99 (101)
Q Consensus        86 sf~~~~~~~~~i~~   99 (101)
                      +|+++..|+.++++
T Consensus       104 s~~~~~~~~~~~~~  117 (189)
T 2x77_A          104 RMGVAKHELYALLD  117 (189)
T ss_dssp             THHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999988765

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.77  E-value=1.4e-18  Score=107.03  Aligned_cols=80  Identities=25%  Similarity=0.457  Sum_probs=69.2

Q ss_pred             eccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      +|++|||||||++++..+.+...+.||.+.++.  .  +....+.+.+||++|+++++.            ++|||++++
T Consensus         9 ~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   88 (170)
T 1ek0_A            9 LGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKP   88 (170)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCH
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCCh
Confidence            599999999999999999988888999986653  2  345568999999999988766            999999999


Q ss_pred             hhHHHHHHHHHHHHHh
Q psy2967          85 DKLEASRNELHALIEK  100 (101)
Q Consensus        85 ~sf~~~~~~~~~i~~~  100 (101)
                      .+|+++..|+.++.+.
T Consensus        89 ~s~~~~~~~~~~~~~~  104 (170)
T 1ek0_A           89 QSFIKARHWVKELHEQ  104 (170)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999888753

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.76  E-value=6.5e-19  Score=108.42  Aligned_cols=79  Identities=32%  Similarity=0.625  Sum_probs=70.6

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKL   87 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf   87 (101)
                      .+|++|||||||++++..+.+. .+.||++.....+..+++.+.+||++|+++++.            ++|||++++++|
T Consensus         5 ~~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~   83 (164)
T 1r8s_A            5 MVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERV   83 (164)
T ss_dssp             EECSTTSSHHHHHHHHHHHCSS-CCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGH
T ss_pred             EECCCCCCHHHHHHHHHcCCcC-cccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHH
Confidence            4699999999999999998887 478899987777888889999999999988765            899999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2967          88 EASRNELHALIE   99 (101)
Q Consensus        88 ~~~~~~~~~i~~   99 (101)
                      +++..|+.++++
T Consensus        84 ~~~~~~~~~~~~   95 (164)
T 1r8s_A           84 NEAREELMRMLA   95 (164)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999988764

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.76  E-value=1.7e-18  Score=108.80  Aligned_cols=80  Identities=29%  Similarity=0.590  Sum_probs=70.9

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhh
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDK   86 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~s   86 (101)
                      +.+|++|||||||++++.+++ ...+.||++.....+..++..+.+||++|+++++.            ++|||++++++
T Consensus        22 ~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s  100 (186)
T 1ksh_A           22 LMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQR  100 (186)
T ss_dssp             EEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGG
T ss_pred             EEECCCCCCHHHHHHHHhcCC-CCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHH
Confidence            346999999999999999988 66889999988877777899999999999987654            99999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy2967          87 LEASRNELHALIE   99 (101)
Q Consensus        87 f~~~~~~~~~i~~   99 (101)
                      |+++..|+.++++
T Consensus       101 ~~~~~~~~~~~~~  113 (186)
T 1ksh_A          101 MQDCQRELQSLLV  113 (186)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988865

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.76  E-value=3.2e-18  Score=108.09  Aligned_cols=81  Identities=27%  Similarity=0.560  Sum_probs=72.0

Q ss_pred             EeccCCCcceeeeeccccCc-CCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhh
Q psy2967          20 NMRKITKGNVTIWPVPLSGQ-FSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDK   86 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~s   86 (101)
                      .+|++|||||||++++.++. +...+.+|++.....+..+++.+.+||++|+++++.            ++|||++++++
T Consensus        26 v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s  105 (190)
T 2h57_A           26 CLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLR  105 (190)
T ss_dssp             EEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHH
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHH
Confidence            35999999999999999988 677889999988877887889999999999987765            99999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy2967          87 LEASRNELHALIEK  100 (101)
Q Consensus        87 f~~~~~~~~~i~~~  100 (101)
                      |+++..|+.+++++
T Consensus       106 ~~~~~~~~~~~~~~  119 (190)
T 2h57_A          106 MVVAKEELDTLLNH  119 (190)
T ss_dssp             HHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999888753

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.76  E-value=1.1e-18  Score=108.85  Aligned_cols=82  Identities=13%  Similarity=0.220  Sum_probs=66.1

Q ss_pred             eeee-EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce-------EEEEECCCh
Q psy2967          16 TVGF-NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS-------IYMVDAADT   84 (101)
Q Consensus        16 ~~g~-~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~-------i~v~d~~~~   84 (101)
                      .+.+ .+|++|||||||+++|..+.+.+ +.||++..+..   +++..+.+.+||++|++++..       ++|||++++
T Consensus         7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~d~~ilv~D~~~~   85 (178)
T 2iwr_A            7 ELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPDAKFSGWADAVIFVFSLEDE   85 (178)
T ss_dssp             EEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCCHHHHHHCSEEEEEEETTCH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCchhHHHHhCCEEEEEEECcCH
Confidence            3443 35999999999999999999886 88998866532   344568899999999987433       999999999


Q ss_pred             hhHHHHHHHHHHHH
Q psy2967          85 DKLEASRNELHALI   98 (101)
Q Consensus        85 ~sf~~~~~~~~~i~   98 (101)
                      ++|+++..|+..+.
T Consensus        86 ~s~~~~~~~~~~i~   99 (178)
T 2iwr_A           86 NSFQAVSRLHGQLS   99 (178)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999766554

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.76  E-value=1.6e-18  Score=109.65  Aligned_cols=86  Identities=16%  Similarity=0.298  Sum_probs=70.2

Q ss_pred             cceeeeE-eccCCCcceeeeeccccCcCCCCCCCccceEEEE--EecCcEEEEEEeeCCCCccce-------EEEEECCC
Q psy2967          14 IPTVGFN-MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK--ITKGNVTIKVWDIGGQPRFRS-------IYMVDAAD   83 (101)
Q Consensus        14 ~~~~g~~-vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~i~D~~G~~~~~~-------i~v~d~~~   83 (101)
                      .+.+.+. +|++|||||||+++++.+.+...+.||.+.....  +.+..+.+.+||++|+++++.       ++|||+++
T Consensus        18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~i~v~d~~~   97 (184)
T 3ihw_A           18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQFAAWVDAVVFVFSLED   97 (184)
T ss_dssp             CCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHHHHHHCSEEEEEEETTC
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhheecCCCEEEEEEECcC
Confidence            3444444 5999999999999999999998888885533333  445568899999999998663       99999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      +.+|+++..|+.++.+
T Consensus        98 ~~s~~~~~~~~~~i~~  113 (184)
T 3ihw_A           98 EISFQTVYNYFLRLCS  113 (184)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998865

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.76  E-value=2.6e-18  Score=107.43  Aligned_cols=81  Identities=16%  Similarity=0.233  Sum_probs=70.1

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      .+|++|||||||++++..+.+...+.||.+..+..   +++..+.+.+||++|+++++.            ++|||++++
T Consensus        11 ~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~   90 (181)
T 3t5g_A           11 ILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSI   90 (181)
T ss_dssp             EEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCH
T ss_pred             EECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCH
Confidence            36999999999999999999998999999977643   344558899999999998765            999999999


Q ss_pred             hhHHHHHHHHHHHHHh
Q psy2967          85 DKLEASRNELHALIEK  100 (101)
Q Consensus        85 ~sf~~~~~~~~~i~~~  100 (101)
                      ++|+.+..|+.++.+.
T Consensus        91 ~s~~~~~~~~~~~~~~  106 (181)
T 3t5g_A           91 KSFEVIKVIHGKLLDM  106 (181)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999988764

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.76  E-value=2.1e-18  Score=108.59  Aligned_cols=81  Identities=19%  Similarity=0.352  Sum_probs=69.3

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      +.+|++|||||||++++..+.+...+.||++..+..   ++...+.+.+||++|+++++.            ++|||+++
T Consensus        11 ~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~   90 (184)
T 1m7b_A           11 VVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISR   90 (184)
T ss_dssp             EEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC
T ss_pred             EEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCC
Confidence            346999999999999999999988899999876642   445678999999999987655            89999999


Q ss_pred             hhhHHHH-HHHHHHHHH
Q psy2967          84 TDKLEAS-RNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~-~~~~~~i~~   99 (101)
                      +++|+++ ..|+.++.+
T Consensus        91 ~~s~~~~~~~~~~~i~~  107 (184)
T 1m7b_A           91 PETLDSVLKKWKGEIQE  107 (184)
T ss_dssp             HHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            9999999 689887764

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.76  E-value=2.2e-18  Score=106.03  Aligned_cols=80  Identities=13%  Similarity=0.213  Sum_probs=69.9

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      .+|++|||||||++++..+.+...+.||++..+..   ++...+.+.+||++|+++++.            ++|||++++
T Consensus         8 v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   87 (167)
T 1c1y_A            8 VLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQ   87 (167)
T ss_dssp             EECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCH
T ss_pred             EECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCH
Confidence            35999999999999999999988899999876643   455678999999999988766            999999999


Q ss_pred             hhHHHHHHHHHHHHH
Q psy2967          85 DKLEASRNELHALIE   99 (101)
Q Consensus        85 ~sf~~~~~~~~~i~~   99 (101)
                      .+|+++..|+.++.+
T Consensus        88 ~s~~~~~~~~~~i~~  102 (167)
T 1c1y_A           88 STFNDLQDLREQILR  102 (167)
T ss_dssp             HHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988765

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.76  E-value=5.3e-19  Score=110.68  Aligned_cols=80  Identities=31%  Similarity=0.617  Sum_probs=66.9

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhh
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDK   86 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~s   86 (101)
                      +.+|++|||||||++++..+++ ..+.||++.....+..++..+.+||++|+++++.            ++|||++++++
T Consensus        22 ~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s  100 (183)
T 1moz_A           22 LILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDR  100 (183)
T ss_dssp             EEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTT
T ss_pred             EEECCCCCCHHHHHHHHhcCCc-CccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHH
Confidence            3469999999999999999888 5788999988777777789999999999987655            89999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy2967          87 LEASRNELHALIE   99 (101)
Q Consensus        87 f~~~~~~~~~i~~   99 (101)
                      |+++..|+.++++
T Consensus       101 ~~~~~~~~~~~~~  113 (183)
T 1moz_A          101 MSTASKELHLMLQ  113 (183)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHc
Confidence            9999999988764

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.75  E-value=1.6e-18  Score=108.58  Aligned_cols=82  Identities=21%  Similarity=0.451  Sum_probs=47.8

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--EE--ecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KI--TKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|++|||||||++++..+.+...+.||++.++.  .+  ++..+.+.+||++|+++++.            ++|||++
T Consensus        12 ~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~   91 (183)
T 2fu5_C           12 LLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDIT   91 (183)
T ss_dssp             EEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETT
T ss_pred             EEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECc
Confidence            34699999999999999999888888899986653  33  34458999999999988765            9999999


Q ss_pred             ChhhHHHHHHHHHHHHHh
Q psy2967          83 DTDKLEASRNELHALIEK  100 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~~  100 (101)
                      ++.+|+++..|+.++.+.
T Consensus        92 ~~~s~~~~~~~~~~i~~~  109 (183)
T 2fu5_C           92 NEKSFDNIRNWIRNIEEH  109 (183)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHh
Confidence            999999999999988753

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.75  E-value=2.2e-18  Score=107.99  Aligned_cols=87  Identities=18%  Similarity=0.219  Sum_probs=72.8

Q ss_pred             ccceeeeE-eccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------E
Q psy2967          13 MIPTVGFN-MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------I   76 (101)
Q Consensus        13 ~~~~~g~~-vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i   76 (101)
                      ..+.+.+. +|++|||||||++++..+.+...+.||++..+..   +.+..+.+.+||++|+++++.            +
T Consensus        15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   94 (183)
T 3kkq_A           15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL   94 (183)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            34445444 5999999999999999999998999999866632   445568889999999998776            9


Q ss_pred             EEEECCChhhHHHHHHHHHHHHH
Q psy2967          77 YMVDAADTDKLEASRNELHALIE   99 (101)
Q Consensus        77 ~v~d~~~~~sf~~~~~~~~~i~~   99 (101)
                      +|||++++++|+++..|+.++.+
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~  117 (183)
T 3kkq_A           95 IVYSVTDKASFEHVDRFHQLILR  117 (183)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999988865

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.75  E-value=1.6e-18  Score=110.70  Aligned_cols=79  Identities=24%  Similarity=0.447  Sum_probs=61.9

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKL   87 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf   87 (101)
                      .+|++|||||||++++.++++. .+.||++.....+..+++.+.+||++|+++++.            ++|||++++++|
T Consensus        30 lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~  108 (198)
T 1f6b_A           30 FLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERL  108 (198)
T ss_dssp             EEEETTSSHHHHHHHHSCC-------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGH
T ss_pred             EECCCCCCHHHHHHHHhcCCCC-ccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHH
Confidence            4699999999999999998875 688899887777777779999999999987765            999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2967          88 EASRNELHALIE   99 (101)
Q Consensus        88 ~~~~~~~~~i~~   99 (101)
                      +++..|+.++++
T Consensus       109 ~~~~~~~~~~~~  120 (198)
T 1f6b_A          109 LESKEELDSLMT  120 (198)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999998864

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.75  E-value=1.5e-18  Score=109.30  Aligned_cols=81  Identities=33%  Similarity=0.615  Sum_probs=70.3

Q ss_pred             eeEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChh
Q psy2967          18 GFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTD   85 (101)
Q Consensus        18 g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~   85 (101)
                      -+.+|++|||||||++++.++.+. .+.||+|+....+..+++.+.+||++|+++++.            ++|||+++++
T Consensus        19 i~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~   97 (181)
T 1fzq_A           19 ILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRK   97 (181)
T ss_dssp             EEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGG
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHH
Confidence            344699999999999999988654 678999988777777799999999999998765            8999999999


Q ss_pred             hHHHHHHHHHHHHH
Q psy2967          86 KLEASRNELHALIE   99 (101)
Q Consensus        86 sf~~~~~~~~~i~~   99 (101)
                      +|+++..|+.++++
T Consensus        98 s~~~~~~~~~~~~~  111 (181)
T 1fzq_A           98 RFEETGQELTELLE  111 (181)
T ss_dssp             GHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999988754

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.75  E-value=5.4e-18  Score=104.77  Aligned_cols=80  Identities=36%  Similarity=0.637  Sum_probs=70.8

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhh
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDK   86 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~s   86 (101)
                      +.+|++|||||||++++..+.+. .+.||++.....+......+.+||++|+++++.            ++|||++++++
T Consensus        11 ~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s   89 (171)
T 1upt_A           11 LILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDR   89 (171)
T ss_dssp             EEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTT
T ss_pred             EEECCCCCCHHHHHHHHhcCCCC-CcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHH
Confidence            34699999999999999998886 578999988877877899999999999987765            99999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy2967          87 LEASRNELHALIE   99 (101)
Q Consensus        87 f~~~~~~~~~i~~   99 (101)
                      |+++..|+.++++
T Consensus        90 ~~~~~~~~~~~~~  102 (171)
T 1upt_A           90 IGISKSELVAMLE  102 (171)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988764

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.74  E-value=1.3e-18  Score=109.60  Aligned_cols=80  Identities=30%  Similarity=0.484  Sum_probs=67.8

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhh
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDK   86 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~s   86 (101)
                      +.+|++|||||||++++..+++. .+.||++.....+..+++.+.+||++|+++++.            ++|||++++++
T Consensus        20 ~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s   98 (187)
T 1zj6_A           20 IIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRER   98 (187)
T ss_dssp             EEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTT
T ss_pred             EEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHH
Confidence            34699999999999999998887 788999977777777889999999999988765            99999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy2967          87 LEASRNELHALIE   99 (101)
Q Consensus        87 f~~~~~~~~~i~~   99 (101)
                      |+++..|+.++++
T Consensus        99 ~~~~~~~~~~~~~  111 (187)
T 1zj6_A           99 ISVTREELYKMLA  111 (187)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998875

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.74  E-value=3.2e-18  Score=107.90  Aligned_cols=86  Identities=21%  Similarity=0.414  Sum_probs=72.1

Q ss_pred             cceeeeE-eccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------E
Q psy2967          14 IPTVGFN-MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------I   76 (101)
Q Consensus        14 ~~~~g~~-vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i   76 (101)
                      .+.+.+. +|+++||||||++++..+.+...+.||++.++.  .  +....+.+.+||++|+++++.            |
T Consensus        13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   92 (195)
T 1x3s_A           13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   92 (195)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence            3444444 599999999999999999998889999887653  2  345568999999999988766            8


Q ss_pred             EEEECCChhhHHHHHHHHHHHHH
Q psy2967          77 YMVDAADTDKLEASRNELHALIE   99 (101)
Q Consensus        77 ~v~d~~~~~sf~~~~~~~~~i~~   99 (101)
                      +|||++++.+|+++..|+.++.+
T Consensus        93 ~v~d~~~~~s~~~~~~~~~~i~~  115 (195)
T 1x3s_A           93 LVYDVTRRDTFVKLDNWLNELET  115 (195)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTT
T ss_pred             EEEECcCHHHHHHHHHHHHHHHH
Confidence            99999999999999999988764

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.74  E-value=5.1e-18  Score=104.80  Aligned_cols=81  Identities=25%  Similarity=0.410  Sum_probs=65.7

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|++|||||||++++..+.+...+.||++.++.  .  +++..+.+.+||++|+++++.            ++|||++
T Consensus        10 ~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~   89 (170)
T 1z08_A           10 VLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDIT   89 (170)
T ss_dssp             EEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETT
T ss_pred             EEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECc
Confidence            34699999999999999999988888999987654  2  345678999999999987765            9999999


Q ss_pred             ChhhHHHHHHHHHHHHH
Q psy2967          83 DTDKLEASRNELHALIE   99 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~   99 (101)
                      ++.+|+++..|+.++.+
T Consensus        90 ~~~s~~~~~~~~~~~~~  106 (170)
T 1z08_A           90 DEDSFQKVKNWVKELRK  106 (170)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999999999988754

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.74  E-value=4e-18  Score=109.64  Aligned_cols=82  Identities=18%  Similarity=0.330  Sum_probs=69.9

Q ss_pred             eeEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          18 GFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        18 g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      -+.+|++|||||||+++|..+.+...+.||++..+..   ++...+.+.+||++|+++++.            |+|||++
T Consensus        31 i~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~  110 (205)
T 1gwn_A           31 IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDIS  110 (205)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETT
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECC
Confidence            3446999999999999999999998899999877642   345679999999999987655            9999999


Q ss_pred             ChhhHHHH-HHHHHHHHH
Q psy2967          83 DTDKLEAS-RNELHALIE   99 (101)
Q Consensus        83 ~~~sf~~~-~~~~~~i~~   99 (101)
                      ++++|+++ ..|+.++.+
T Consensus       111 ~~~s~~~~~~~~~~~i~~  128 (205)
T 1gwn_A          111 RPETLDSVLKKWKGEIQE  128 (205)
T ss_dssp             CHHHHHHHHHTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence            99999999 789888765

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.74  E-value=5e-18  Score=107.70  Aligned_cols=79  Identities=25%  Similarity=0.473  Sum_probs=70.4

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKL   87 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf   87 (101)
                      .+|++|||||||++++..+++. .+.||++.....+..+++.+.+||++|+++++.            ++|||++++++|
T Consensus        28 ~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~  106 (190)
T 1m2o_B           28 FLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERF  106 (190)
T ss_dssp             EEESTTSSHHHHHHHHHHSCCC-CCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGH
T ss_pred             EECCCCCCHHHHHHHHhcCCCC-ccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHH
Confidence            4699999999999999998876 688999988777777789999999999987765            999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2967          88 EASRNELHALIE   99 (101)
Q Consensus        88 ~~~~~~~~~i~~   99 (101)
                      +++..|+.++++
T Consensus       107 ~~~~~~~~~~~~  118 (190)
T 1m2o_B          107 DEARVELDALFN  118 (190)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHc
Confidence            999999988864

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.74  E-value=6.5e-18  Score=104.05  Aligned_cols=82  Identities=21%  Similarity=0.383  Sum_probs=70.0

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|++|||||||++++..+.+...+.+|++.++.  .  +....+.+.+||++|+++++.            ++|||++
T Consensus        10 ~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~   89 (170)
T 1r2q_A           10 VLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDIT   89 (170)
T ss_dssp             EEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETT
T ss_pred             EEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECC
Confidence            34699999999999999999998888899887653  2  344578999999999998765            9999999


Q ss_pred             ChhhHHHHHHHHHHHHHh
Q psy2967          83 DTDKLEASRNELHALIEK  100 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~~  100 (101)
                      ++.+|+++..|+.++.+.
T Consensus        90 ~~~s~~~~~~~~~~~~~~  107 (170)
T 1r2q_A           90 NEESFARAKNWVKELQRQ  107 (170)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHh
Confidence            999999999999888653

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.74  E-value=3.2e-18  Score=108.75  Aligned_cols=80  Identities=31%  Similarity=0.626  Sum_probs=66.7

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhh
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDK   86 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~s   86 (101)
                      +.+|++|||||||++++..+++. .+.||+++....+..+++.+.+||++|+++++.            ++|||++++++
T Consensus        33 ~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s  111 (192)
T 2b6h_A           33 LMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER  111 (192)
T ss_dssp             EEEESTTSSHHHHHHHHCSSCCE-EEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGG
T ss_pred             EEECCCCCCHHHHHHHHHhCCcc-ccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHH
Confidence            34699999999999999998887 578899988777888899999999999988765            89999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy2967          87 LEASRNELHALIE   99 (101)
Q Consensus        87 f~~~~~~~~~i~~   99 (101)
                      |+++..|+.++++
T Consensus       112 ~~~~~~~l~~~~~  124 (192)
T 2b6h_A          112 VQESADELQKMLQ  124 (192)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988764

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.74  E-value=5.7e-18  Score=104.00  Aligned_cols=80  Identities=16%  Similarity=0.263  Sum_probs=66.6

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      .+|++|||||||++++..+.+...+.+|.+..+..   +.+..+.+.+||++|+++++.            ++|||++++
T Consensus         9 v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   88 (168)
T 1u8z_A            9 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEM   88 (168)
T ss_dssp             EECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCH
T ss_pred             EECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCH
Confidence            35999999999999999999988889998876643   345568999999999987765            999999999


Q ss_pred             hhHHHHHHHHHHHHH
Q psy2967          85 DKLEASRNELHALIE   99 (101)
Q Consensus        85 ~sf~~~~~~~~~i~~   99 (101)
                      ++|+.+..|+.++.+
T Consensus        89 ~s~~~~~~~~~~i~~  103 (168)
T 1u8z_A           89 ESFAATADFREQILR  103 (168)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988875

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.74  E-value=2.3e-18  Score=108.12  Aligned_cols=80  Identities=30%  Similarity=0.482  Sum_probs=70.8

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhh
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDK   86 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~s   86 (101)
                      +.+|++|||||||++++..+++ ..+.||++.....+..+++.+.+||++|+++++.            ++|||++++++
T Consensus        25 ~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s  103 (181)
T 2h17_A           25 IIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRER  103 (181)
T ss_dssp             EEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTT
T ss_pred             EEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHH
Confidence            3459999999999999999988 5788999987777777889999999999988765            99999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy2967          87 LEASRNELHALIE   99 (101)
Q Consensus        87 f~~~~~~~~~i~~   99 (101)
                      |+++..|+.++++
T Consensus       104 ~~~~~~~~~~~~~  116 (181)
T 2h17_A          104 ISVTREELYKMLA  116 (181)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988865

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.74  E-value=5.7e-18  Score=107.26  Aligned_cols=83  Identities=12%  Similarity=0.195  Sum_probs=70.1

Q ss_pred             eeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEEC
Q psy2967          17 VGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDA   81 (101)
Q Consensus        17 ~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~   81 (101)
                      .-+.+|++|||||||++++..+.+...+.||++..+..   +.+..+.+.+||++|+++++.            ++|||+
T Consensus        25 ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~  104 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAV  104 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEET
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEEC
Confidence            33446999999999999999999998999999977754   445668899999999998765            999999


Q ss_pred             CChhhHHHH-HHHHHHHHH
Q psy2967          82 ADTDKLEAS-RNELHALIE   99 (101)
Q Consensus        82 ~~~~sf~~~-~~~~~~i~~   99 (101)
                      +++++|+++ ..|+..+..
T Consensus       105 ~~~~s~~~~~~~~~~~~~~  123 (194)
T 3reg_A          105 NNRTSFDNISTKWEPEIKH  123 (194)
T ss_dssp             TCHHHHHHHHHTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHH
Confidence            999999998 678777654

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.74  E-value=5.6e-18  Score=108.72  Aligned_cols=81  Identities=22%  Similarity=0.357  Sum_probs=69.6

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|++|||||||++++..+.+...+.+|++.++.  .  +++..+.+.+||++|+++++.            ++|||++
T Consensus        30 ~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~  109 (201)
T 2ew1_A           30 VLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDIT  109 (201)
T ss_dssp             EEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETT
T ss_pred             EEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECC
Confidence            34699999999999999999998889999987763  2  334558999999999998765            9999999


Q ss_pred             ChhhHHHHHHHHHHHHH
Q psy2967          83 DTDKLEASRNELHALIE   99 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~   99 (101)
                      ++.+|+++..|+.++.+
T Consensus       110 ~~~s~~~~~~~~~~i~~  126 (201)
T 2ew1_A          110 CEESFRCLPEWLREIEQ  126 (201)
T ss_dssp             CHHHHHTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999999999988764

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.74  E-value=8.9e-18  Score=104.50  Aligned_cols=80  Identities=14%  Similarity=0.196  Sum_probs=69.4

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      .+|++|||||||++++..+.+...+.+|++..+..   +++..+.+.+||++|+++++.            ++|||++++
T Consensus        14 v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   93 (181)
T 2fn4_A           14 VVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDR   93 (181)
T ss_dssp             EEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCH
T ss_pred             EECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCH
Confidence            36999999999999999999998999999877643   334458999999999998766            999999999


Q ss_pred             hhHHHHHHHHHHHHH
Q psy2967          85 DKLEASRNELHALIE   99 (101)
Q Consensus        85 ~sf~~~~~~~~~i~~   99 (101)
                      .+|+++..|+.++++
T Consensus        94 ~s~~~~~~~~~~~~~  108 (181)
T 2fn4_A           94 QSFNEVGKLFTQILR  108 (181)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998854

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.73  E-value=6.2e-18  Score=108.40  Aligned_cols=81  Identities=20%  Similarity=0.272  Sum_probs=69.5

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      +.+|++|||||||++++..+.+...+.||++..+..   +++..+.+.+||++|+++++.            |+|||+++
T Consensus        13 ~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~   92 (212)
T 2j0v_A           13 VTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLIS   92 (212)
T ss_dssp             EEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTC
T ss_pred             EEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCC
Confidence            346999999999999999999988899999866542   455668999999999998765            99999999


Q ss_pred             hhhHHHHH-HHHHHHHH
Q psy2967          84 TDKLEASR-NELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~-~~~~~i~~   99 (101)
                      +++|+++. .|+.++..
T Consensus        93 ~~s~~~~~~~~~~~~~~  109 (212)
T 2j0v_A           93 KASYENVLKKWMPELRR  109 (212)
T ss_dssp             HHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999997 79888765

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.73  E-value=7.4e-18  Score=104.72  Aligned_cols=81  Identities=19%  Similarity=0.409  Sum_probs=69.1

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|++|||||||++++..+.+...+.||++.++..    +.+..+.+.+||++|+++++.            ++|||++
T Consensus        18 ~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~   97 (179)
T 2y8e_A           18 VFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT   97 (179)
T ss_dssp             EEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETT
T ss_pred             EEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECC
Confidence            345999999999999999999988889999866532    334558999999999988766            9999999


Q ss_pred             ChhhHHHHHHHHHHHHH
Q psy2967          83 DTDKLEASRNELHALIE   99 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~   99 (101)
                      ++.+|+++..|+.++..
T Consensus        98 ~~~s~~~~~~~~~~i~~  114 (179)
T 2y8e_A           98 NTNSFHQTSKWIDDVRT  114 (179)
T ss_dssp             CHHHHHTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999999999988764

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.73  E-value=2.3e-18  Score=107.23  Aligned_cols=81  Identities=22%  Similarity=0.386  Sum_probs=68.1

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEE--EEEecC---cEEEEEEeeCCCCccce------------EEEEEC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM--RKITKG---NVTIKVWDIGGQPRFRS------------IYMVDA   81 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~--~~~~~~---~~~~~i~D~~G~~~~~~------------i~v~d~   81 (101)
                      +.+|++|||||||++++..+.+...+.||++.++  ..+...   .+.+.+||++|+++++.            ++|||+
T Consensus        10 ~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~   89 (178)
T 2hxs_A           10 VVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDI   89 (178)
T ss_dssp             EEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEET
T ss_pred             EEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEEC
Confidence            3469999999999999999998877888988544  344433   48999999999998765            999999


Q ss_pred             CChhhHHHHHHHHHHHHH
Q psy2967          82 ADTDKLEASRNELHALIE   99 (101)
Q Consensus        82 ~~~~sf~~~~~~~~~i~~   99 (101)
                      +++.+|+++..|+.++.+
T Consensus        90 ~~~~s~~~~~~~~~~i~~  107 (178)
T 2hxs_A           90 TNYQSFENLEDWYTVVKK  107 (178)
T ss_dssp             TCHHHHHTHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            999999999999988765

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.73  E-value=7.3e-18  Score=105.67  Aligned_cols=81  Identities=23%  Similarity=0.372  Sum_probs=68.6

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--EE--ecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KI--TKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|++|||||||++++..+.+...+.||++.++.  .+  .++.+.+.+||++|+++++.            ++|||++
T Consensus        14 ~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~   93 (186)
T 2bme_A           14 LVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDIT   93 (186)
T ss_dssp             EEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETT
T ss_pred             EEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECc
Confidence            34699999999999999999998888899886653  23  34458999999999988765            9999999


Q ss_pred             ChhhHHHHHHHHHHHHH
Q psy2967          83 DTDKLEASRNELHALIE   99 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~   99 (101)
                      ++.+|+++..|+.++..
T Consensus        94 ~~~s~~~~~~~~~~~~~  110 (186)
T 2bme_A           94 SRETYNALTNWLTDARM  110 (186)
T ss_dssp             CHHHHHTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999999999988754

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.73  E-value=2.2e-18  Score=110.25  Aligned_cols=81  Identities=20%  Similarity=0.382  Sum_probs=60.6

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEE--EEEe--cCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM--RKIT--KGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~--~~~~--~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|++|||||||++++..+.+...+.||++.++  ..+.  +..+.+.+||++|+++++.            |+|||++
T Consensus        33 ~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~  112 (201)
T 2hup_A           33 VLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDIT  112 (201)
T ss_dssp             EEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETT
T ss_pred             EEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECC
Confidence            3469999999999999999999888899988554  3333  4458999999999998765            9999999


Q ss_pred             ChhhHHHHHHHHHHHHH
Q psy2967          83 DTDKLEASRNELHALIE   99 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~   99 (101)
                      ++++|+++..|+.++.+
T Consensus       113 ~~~s~~~~~~~~~~i~~  129 (201)
T 2hup_A          113 KRSSFLSVPHWIEDVRK  129 (201)
T ss_dssp             BHHHHHTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999999999998875

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.73  E-value=1.1e-17  Score=104.06  Aligned_cols=81  Identities=22%  Similarity=0.448  Sum_probs=66.5

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEE--EEe--cCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KIT--KGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      .+|++|||||||++++.++.+...+.||++.++.  .+.  +..+.+.+||++|+++++.            ++|||+++
T Consensus        14 v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~   93 (181)
T 3tw8_B           14 IIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTS   93 (181)
T ss_dssp             EECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTC
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCC
Confidence            3699999999999999999988888899886654  333  3448999999999987765            99999999


Q ss_pred             hhhHHHHHHHHHHHHHh
Q psy2967          84 TDKLEASRNELHALIEK  100 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~~  100 (101)
                      +.+|+++..|+.++.+.
T Consensus        94 ~~s~~~~~~~~~~~~~~  110 (181)
T 3tw8_B           94 AESFVNVKRWLHEINQN  110 (181)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999988653

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.73  E-value=1.1e-17  Score=106.68  Aligned_cols=79  Identities=18%  Similarity=0.268  Sum_probs=67.8

Q ss_pred             eccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCChh
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTD   85 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~   85 (101)
                      +|++|||||||++++..+.+...+.||.+..+..   +....+.+.+||++|+++++.            ++|||+++++
T Consensus        30 vG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~  109 (201)
T 3oes_A           30 LGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLH  109 (201)
T ss_dssp             EESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHH
T ss_pred             ECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHH
Confidence            5999999999999999999998999999876643   346679999999999988765            9999999999


Q ss_pred             hHHHHHHHHHHHHH
Q psy2967          86 KLEASRNELHALIE   99 (101)
Q Consensus        86 sf~~~~~~~~~i~~   99 (101)
                      +|+.+..|+.++.+
T Consensus       110 s~~~~~~~~~~i~~  123 (201)
T 3oes_A          110 SFQVIESLYQKLHE  123 (201)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998865

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.73  E-value=6.8e-18  Score=107.31  Aligned_cols=82  Identities=12%  Similarity=0.176  Sum_probs=61.9

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      +.+|++|||||||++++..+.+...+.||++..+..   +++..+.+.+||++|+++++.            ++|||+++
T Consensus        24 ~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~  103 (201)
T 2q3h_A           24 VLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVS  103 (201)
T ss_dssp             EEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTC
T ss_pred             EEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCC
Confidence            335999999999999999999988899999876642   334558899999999998765            99999999


Q ss_pred             hhhHHHHH-HHHHHHHHh
Q psy2967          84 TDKLEASR-NELHALIEK  100 (101)
Q Consensus        84 ~~sf~~~~-~~~~~i~~~  100 (101)
                      +++|+++. .|+.++..+
T Consensus       104 ~~s~~~~~~~~~~~~~~~  121 (201)
T 2q3h_A          104 PSSFQNVSEKWVPEIRCH  121 (201)
T ss_dssp             HHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            99999997 798887653

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.73  E-value=1.3e-17  Score=105.60  Aligned_cols=80  Identities=21%  Similarity=0.352  Sum_probs=69.7

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      .+|++|||||||++++..+.+...+.||++.++..    +....+.+.+||++|+++++.            ++|||+++
T Consensus        28 vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~  107 (192)
T 2fg5_A           28 LLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITK  107 (192)
T ss_dssp             EEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTC
T ss_pred             EECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCC
Confidence            35999999999999999999888899999977643    345678999999999988766            99999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      +.+|+++..|+.++.+
T Consensus       108 ~~s~~~~~~~~~~i~~  123 (192)
T 2fg5_A          108 QDSFYTLKKWVKELKE  123 (192)
T ss_dssp             THHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988765

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.73  E-value=4.3e-18  Score=107.46  Aligned_cols=82  Identities=20%  Similarity=0.403  Sum_probs=69.6

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--EE--ecCcEEEEEEeeCCCCccc-e------------EEEEEC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KI--TKGNVTIKVWDIGGQPRFR-S------------IYMVDA   81 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~D~~G~~~~~-~------------i~v~d~   81 (101)
                      +.+|++|||||||++++..+.+...+.+|++.++.  .+  .+..+.+.+||++|+++++ .            |+|||+
T Consensus        24 ~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~  103 (189)
T 1z06_A           24 IVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDM  103 (189)
T ss_dssp             EEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEET
T ss_pred             EEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEEC
Confidence            34599999999999999999998888899886553  33  3445899999999998876 3            999999


Q ss_pred             CChhhHHHHHHHHHHHHHh
Q psy2967          82 ADTDKLEASRNELHALIEK  100 (101)
Q Consensus        82 ~~~~sf~~~~~~~~~i~~~  100 (101)
                      +++.+|+.+..|+.++.+.
T Consensus       104 ~~~~s~~~~~~~~~~i~~~  122 (189)
T 1z06_A          104 TNMASFHSLPAWIEECKQH  122 (189)
T ss_dssp             TCHHHHHTHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHh
Confidence            9999999999999988764

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.72  E-value=1.4e-17  Score=102.21  Aligned_cols=81  Identities=16%  Similarity=0.242  Sum_probs=68.8

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      .+|++|||||||++++..+.+...+.||.+..+..   +.+..+.+.+||++|+++++.            ++|||++++
T Consensus         8 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~   87 (167)
T 1kao_A            8 VLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQ   87 (167)
T ss_dssp             EECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCH
T ss_pred             EECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCH
Confidence            35999999999999999999988888988755432   345567899999999988765            999999999


Q ss_pred             hhHHHHHHHHHHHHHh
Q psy2967          85 DKLEASRNELHALIEK  100 (101)
Q Consensus        85 ~sf~~~~~~~~~i~~~  100 (101)
                      .+|+++..|+.++.+.
T Consensus        88 ~s~~~~~~~~~~i~~~  103 (167)
T 1kao_A           88 QSFQDIKPMRDQIIRV  103 (167)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999888753

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.72  E-value=7.3e-18  Score=106.64  Aligned_cols=81  Identities=12%  Similarity=0.198  Sum_probs=68.9

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEE-E--EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR-K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      .+|+++||||||++++..+.+...+.||++..+. .  +.+..+.+.+||++|+++++.            ++|||++++
T Consensus        23 v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~  102 (194)
T 2atx_A           23 VVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNP  102 (194)
T ss_dssp             EEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCH
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCH
Confidence            3599999999999999999998889999986653 2  344568999999999987765            999999999


Q ss_pred             hhHHHHH-HHHHHHHHh
Q psy2967          85 DKLEASR-NELHALIEK  100 (101)
Q Consensus        85 ~sf~~~~-~~~~~i~~~  100 (101)
                      ++|+++. .|+.++.+.
T Consensus       103 ~s~~~~~~~~~~~~~~~  119 (194)
T 2atx_A          103 ASFQNVKEEWVPELKEY  119 (194)
T ss_dssp             HHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            9999997 798887653

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.72  E-value=1.6e-17  Score=102.42  Aligned_cols=80  Identities=20%  Similarity=0.348  Sum_probs=68.9

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      .+|++|||||||++++.++.+...+.||.+..+..    +......+.+||++|+++++.            ++|||+++
T Consensus        11 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~   90 (170)
T 1z0j_A           11 LLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITK   90 (170)
T ss_dssp             EECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTC
T ss_pred             EECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcC
Confidence            35999999999999999999888889999876532    344568999999999987765            89999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      +.+++++..|+.++.+
T Consensus        91 ~~s~~~~~~~~~~l~~  106 (170)
T 1z0j_A           91 EETFSTLKNWVRELRQ  106 (170)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988765

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.72  E-value=1.3e-17  Score=105.96  Aligned_cols=81  Identities=16%  Similarity=0.253  Sum_probs=69.6

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      .+|++|||||||++++..+.+...+.+|.+..+..   +.+..+.+.+||++|+++++.            ++|||++++
T Consensus        19 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~   98 (206)
T 2bov_A           19 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEM   98 (206)
T ss_dssp             EECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCH
T ss_pred             EECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCH
Confidence            35999999999999999999988899998876532   344557999999999988765            999999999


Q ss_pred             hhHHHHHHHHHHHHHh
Q psy2967          85 DKLEASRNELHALIEK  100 (101)
Q Consensus        85 ~sf~~~~~~~~~i~~~  100 (101)
                      ++|+.+..|+.++.+.
T Consensus        99 ~s~~~~~~~~~~i~~~  114 (206)
T 2bov_A           99 ESFAATADFREQILRV  114 (206)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999988753

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.72  E-value=6.7e-18  Score=103.95  Aligned_cols=81  Identities=19%  Similarity=0.389  Sum_probs=69.0

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|++|||||||++++..+.+...+.||++.++.  .  +....+.+.+||++|+++++.            ++|||++
T Consensus         9 ~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~   88 (168)
T 1z2a_A            9 VVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTT   88 (168)
T ss_dssp             EEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETT
T ss_pred             EEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECc
Confidence            34699999999999999999998888999886553  2  334568999999999988765            9999999


Q ss_pred             ChhhHHHHHHHHHHHHH
Q psy2967          83 DTDKLEASRNELHALIE   99 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~   99 (101)
                      ++.+|+++..|+.++.+
T Consensus        89 ~~~s~~~~~~~~~~i~~  105 (168)
T 1z2a_A           89 DRESFEAISSWREKVVA  105 (168)
T ss_dssp             CHHHHHTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999999999988865

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.72  E-value=1.6e-17  Score=103.88  Aligned_cols=86  Identities=15%  Similarity=0.238  Sum_probs=71.2

Q ss_pred             cceeeeE-eccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EE
Q psy2967          14 IPTVGFN-MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IY   77 (101)
Q Consensus        14 ~~~~g~~-vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~   77 (101)
                      .+.+.+. +|++|||||||++++..+.+...+.+|.+..+..   +....+.+.+||++|+++++.            ++
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   95 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEE
Confidence            3344433 5999999999999999999988889998876643   344558999999999987765            99


Q ss_pred             EEECCChhhHHHHHHHHHHHHH
Q psy2967          78 MVDAADTDKLEASRNELHALIE   99 (101)
Q Consensus        78 v~d~~~~~sf~~~~~~~~~i~~   99 (101)
                      |||++++++|+.+..|+.++.+
T Consensus        96 v~d~~~~~s~~~~~~~~~~i~~  117 (187)
T 2a9k_A           96 VFSITEMESFAATADFREQILR  117 (187)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHH
Confidence            9999999999999999988875

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.72  E-value=1.7e-17  Score=105.58  Aligned_cols=81  Identities=17%  Similarity=0.407  Sum_probs=69.5

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|++|||||||++++..+.+...+.+|++.++.  .  +....+.+.+||++|+++++.            |+|||++
T Consensus        12 ~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~   91 (203)
T 1zbd_A           12 LIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDIT   91 (203)
T ss_dssp             EEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETT
T ss_pred             EEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECc
Confidence            34699999999999999999998888999986664  2  344568999999999988765            9999999


Q ss_pred             ChhhHHHHHHHHHHHHH
Q psy2967          83 DTDKLEASRNELHALIE   99 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~   99 (101)
                      ++.+|+++..|+.++..
T Consensus        92 ~~~s~~~~~~~~~~i~~  108 (203)
T 1zbd_A           92 NEESFNAVQDWSTQIKT  108 (203)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999999999988765

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.72  E-value=1.2e-17  Score=104.14  Aligned_cols=83  Identities=19%  Similarity=0.354  Sum_probs=70.0

Q ss_pred             eeEeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEEC
Q psy2967          18 GFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDA   81 (101)
Q Consensus        18 g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~   81 (101)
                      -+.+|++|||||||++++..+++...+.+|++.++.  .  +....+.+.+||++|+++++.            ++|||+
T Consensus        15 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~   94 (181)
T 2efe_B           15 LVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDV   94 (181)
T ss_dssp             EEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEET
T ss_pred             EEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEEC
Confidence            344699999999999999999998888888885543  2  344568999999999988765            999999


Q ss_pred             CChhhHHHHHHHHHHHHHh
Q psy2967          82 ADTDKLEASRNELHALIEK  100 (101)
Q Consensus        82 ~~~~sf~~~~~~~~~i~~~  100 (101)
                      +++.+|+++..|+.++.+.
T Consensus        95 ~~~~s~~~~~~~~~~~~~~  113 (181)
T 2efe_B           95 TNQASFERAKKWVQELQAQ  113 (181)
T ss_dssp             TCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHh
Confidence            9999999999999988753

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.72  E-value=1.1e-17  Score=104.01  Aligned_cols=81  Identities=21%  Similarity=0.392  Sum_probs=65.5

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|++|||||||++++..+.+...+.||++.++.  .  +.+..+.+.+||++|+++++.            ++|||++
T Consensus        11 ~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~   90 (177)
T 1wms_A           11 ILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVD   90 (177)
T ss_dssp             EEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETT
T ss_pred             EEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECc
Confidence            34699999999999999999988888999987763  2  334458999999999988765            8999999


Q ss_pred             ChhhHHHHHHHHHHHHH
Q psy2967          83 DTDKLEASRNELHALIE   99 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~   99 (101)
                      ++.+|+++..|+.++..
T Consensus        91 ~~~s~~~~~~~~~~~~~  107 (177)
T 1wms_A           91 DSQSFQNLSNWKKEFIY  107 (177)
T ss_dssp             CHHHHHTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999999999988764

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.72  E-value=1.5e-17  Score=104.97  Aligned_cols=82  Identities=20%  Similarity=0.421  Sum_probs=69.8

Q ss_pred             eeEeccCCCcceeeeeccccCcCCCCCCCccceEEE--EE--ecCcEEEEEEeeCCCCccce------------EEEEEC
Q psy2967          18 GFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KI--TKGNVTIKVWDIGGQPRFRS------------IYMVDA   81 (101)
Q Consensus        18 g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~D~~G~~~~~~------------i~v~d~   81 (101)
                      -+.+|++|||||||++++..+.+...+.|+++.++.  .+  .+..+.+.+||++|+++++.            ++|||+
T Consensus        19 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~   98 (196)
T 3tkl_A           19 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDV   98 (196)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEET
T ss_pred             EEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEEC
Confidence            344699999999999999999998888999886664  23  34458999999999988765            999999


Q ss_pred             CChhhHHHHHHHHHHHHH
Q psy2967          82 ADTDKLEASRNELHALIE   99 (101)
Q Consensus        82 ~~~~sf~~~~~~~~~i~~   99 (101)
                      +++.+|+++..|+.++.+
T Consensus        99 ~~~~s~~~~~~~~~~i~~  116 (196)
T 3tkl_A           99 TDQESFNNVKQWLQEIDR  116 (196)
T ss_dssp             TCHHHHHTHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHH
Confidence            999999999999988765

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.72  E-value=1.7e-17  Score=103.38  Aligned_cols=82  Identities=24%  Similarity=0.429  Sum_probs=65.1

Q ss_pred             eeEeccCCCcceeeeeccccCcCC-CCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEE
Q psy2967          18 GFNMRKITKGNVTIWPVPLSGQFS-QDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVD   80 (101)
Q Consensus        18 g~~vG~~~vGKtsl~~~~~~~~~~-~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d   80 (101)
                      -+.+|++|||||||++++..+.+. ..+.||++.++..    +.+..+.+.+||++|+++++.            ++|||
T Consensus        13 i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d   92 (180)
T 2g6b_A           13 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYD   92 (180)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEE
T ss_pred             EEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEE
Confidence            344699999999999999998885 4678888877643    344568999999999988765            99999


Q ss_pred             CCChhhHHHHHHHHHHHHH
Q psy2967          81 AADTDKLEASRNELHALIE   99 (101)
Q Consensus        81 ~~~~~sf~~~~~~~~~i~~   99 (101)
                      ++++.+|+++..|+.++.+
T Consensus        93 ~~~~~s~~~~~~~~~~i~~  111 (180)
T 2g6b_A           93 VTNKASFDNIQAWLTEIHE  111 (180)
T ss_dssp             TTCHHHHHTHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHH
Confidence            9999999999999988765

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.72  E-value=7.4e-18  Score=103.93  Aligned_cols=82  Identities=21%  Similarity=0.454  Sum_probs=63.1

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--EE--ecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KI--TKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|++|||||||++++..+.+...+.||++.++.  .+  .+..+.+.+||++|+++++.            ++|||++
T Consensus         7 ~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~   86 (170)
T 1g16_A            7 LLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDIT   86 (170)
T ss_dssp             EEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETT
T ss_pred             EEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECC
Confidence            34699999999999999999988888888885553  33  34568999999999988766            9999999


Q ss_pred             ChhhHHHHHHHHHHHHHh
Q psy2967          83 DTDKLEASRNELHALIEK  100 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~~  100 (101)
                      ++.+|+++..|+.++.+.
T Consensus        87 ~~~s~~~~~~~~~~i~~~  104 (170)
T 1g16_A           87 DERTFTNIKQWFKTVNEH  104 (170)
T ss_dssp             CHHHHHTHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHh
Confidence            999999999999887653

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.72  E-value=1.3e-17  Score=106.52  Aligned_cols=81  Identities=21%  Similarity=0.444  Sum_probs=69.3

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|++|||||||++++..+.+...+.||++.++.  .  +.+..+.+.+||++|+++++.            |+|||++
T Consensus        12 ~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~   91 (206)
T 2bcg_Y           12 LLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVT   91 (206)
T ss_dssp             EEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETT
T ss_pred             EEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECc
Confidence            34699999999999999999998888899886653  3  344568999999999988766            9999999


Q ss_pred             ChhhHHHHHHHHHHHHH
Q psy2967          83 DTDKLEASRNELHALIE   99 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~   99 (101)
                      ++.+|+.+..|+.++..
T Consensus        92 ~~~s~~~~~~~~~~i~~  108 (206)
T 2bcg_Y           92 DQESFNGVKMWLQEIDR  108 (206)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999999999988764

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.72  E-value=7.9e-18  Score=108.72  Aligned_cols=85  Identities=22%  Similarity=0.375  Sum_probs=72.2

Q ss_pred             eeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEE
Q psy2967          16 TVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMV   79 (101)
Q Consensus        16 ~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~   79 (101)
                      +.-+.+|++|||||||+++|+.+.+...+.+|.+.+...    +....+.+.+||++|+++++.            ++||
T Consensus        16 ~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~   95 (221)
T 3gj0_A           16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMF   95 (221)
T ss_dssp             EEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEE
Confidence            333446999999999999999998888889999877643    345678999999999998776            9999


Q ss_pred             ECCChhhHHHHHHHHHHHHHh
Q psy2967          80 DAADTDKLEASRNELHALIEK  100 (101)
Q Consensus        80 d~~~~~sf~~~~~~~~~i~~~  100 (101)
                      |++++.+|+++..|+.++.+.
T Consensus        96 d~~~~~s~~~~~~~~~~~~~~  116 (221)
T 3gj0_A           96 DVTSRVTYKNVPNWHRDLVRV  116 (221)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999988763

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.71  E-value=1.9e-17  Score=104.65  Aligned_cols=81  Identities=19%  Similarity=0.374  Sum_probs=69.6

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|++|||||||++++..+.+...+.+|++.++..    +....+.+.+||++|+++++.            |+|||++
T Consensus        29 ~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~  108 (193)
T 2oil_A           29 VLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLT  108 (193)
T ss_dssp             EEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETT
T ss_pred             EEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECC
Confidence            346999999999999999999988888998876642    345678999999999988765            9999999


Q ss_pred             ChhhHHHHHHHHHHHHH
Q psy2967          83 DTDKLEASRNELHALIE   99 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~   99 (101)
                      ++.+|+++..|+.++..
T Consensus       109 ~~~s~~~~~~~l~~i~~  125 (193)
T 2oil_A          109 KHQTYAVVERWLKELYD  125 (193)
T ss_dssp             CHHHHHTHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999999999988764

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.71  E-value=9.4e-18  Score=106.14  Aligned_cols=81  Identities=17%  Similarity=0.286  Sum_probs=64.5

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|++|||||||++++..+.+...+.+|++.++.  .  +++..+.+.+||++|+++++.            |+|||++
T Consensus        25 ~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~  104 (191)
T 2a5j_A           25 IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT  104 (191)
T ss_dssp             EEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETT
T ss_pred             EEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECC
Confidence            34599999999999999999988888888885543  3  344568999999999998766            9999999


Q ss_pred             ChhhHHHHHHHHHHHHH
Q psy2967          83 DTDKLEASRNELHALIE   99 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~   99 (101)
                      ++++|+++..|+.++.+
T Consensus       105 ~~~s~~~~~~~l~~i~~  121 (191)
T 2a5j_A          105 RRETFNHLTSWLEDARQ  121 (191)
T ss_dssp             CHHHHHTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999999999998865

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.71  E-value=1.7e-17  Score=104.66  Aligned_cols=80  Identities=19%  Similarity=0.420  Sum_probs=68.9

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      .+|++|||||||++++..+++...+.+|++.++.  .  .....+.+.+||++|+++++.            ++|||+++
T Consensus        27 vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~  106 (189)
T 2gf9_A           27 LIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIAN  106 (189)
T ss_dssp             EECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTC
T ss_pred             EECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCC
Confidence            3699999999999999999998888899886653  2  334568999999999988765            89999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      +.+|+.+..|+.++.+
T Consensus       107 ~~s~~~~~~~~~~i~~  122 (189)
T 2gf9_A          107 QESFAAVQDWATQIKT  122 (189)
T ss_dssp             HHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988765

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.71  E-value=2.4e-17  Score=104.99  Aligned_cols=81  Identities=19%  Similarity=0.375  Sum_probs=69.5

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE--E--ecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK--I--TKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|++|||||||++++..+.+...+.+|++.++..  +  ....+.+.+||++|+++++.            |+|||++
T Consensus        12 ~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~   91 (207)
T 1vg8_A           12 IILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVT   91 (207)
T ss_dssp             EEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETT
T ss_pred             EEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECC
Confidence            346999999999999999999988899999876643  3  34568999999999988765            9999999


Q ss_pred             ChhhHHHHHHHHHHHHH
Q psy2967          83 DTDKLEASRNELHALIE   99 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~   99 (101)
                      ++.+|+++..|+.++..
T Consensus        92 ~~~s~~~~~~~~~~~~~  108 (207)
T 1vg8_A           92 APNTFKTLDSWRDEFLI  108 (207)
T ss_dssp             CHHHHHTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999999999988764

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.71  E-value=3.2e-17  Score=102.89  Aligned_cols=81  Identities=25%  Similarity=0.503  Sum_probs=69.5

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE---EEe--cC---------cEEEEEEeeCCCCccce---------
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR---KIT--KG---------NVTIKVWDIGGQPRFRS---------   75 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~---~~~--~~---------~~~~~i~D~~G~~~~~~---------   75 (101)
                      +.+|++|||||||++++..+.+...+.||++.++.   .+.  ..         .+.+.+||++|+++++.         
T Consensus        15 ~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   94 (195)
T 3bc1_A           15 LALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDA   94 (195)
T ss_dssp             EEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTC
T ss_pred             EEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCC
Confidence            34699999999999999999998888999997765   232  22         68999999999988765         


Q ss_pred             ---EEEEECCChhhHHHHHHHHHHHHH
Q psy2967          76 ---IYMVDAADTDKLEASRNELHALIE   99 (101)
Q Consensus        76 ---i~v~d~~~~~sf~~~~~~~~~i~~   99 (101)
                         |+|||++++.+++++..|+.++..
T Consensus        95 d~~i~v~d~~~~~s~~~~~~~~~~i~~  121 (195)
T 3bc1_A           95 MGFLLLFDLTNEQSFLNVRNWISQLQM  121 (195)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence               999999999999999999998875

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.71  E-value=3.9e-17  Score=103.00  Aligned_cols=82  Identities=18%  Similarity=0.368  Sum_probs=69.1

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--EEecCc-------------------------------------
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KITKGN-------------------------------------   59 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~~~~~-------------------------------------   59 (101)
                      +.+|+++||||||++++.++.+...+.||++.++.  .+...+                                     
T Consensus        11 ~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (208)
T 3clv_A           11 VLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNENL   90 (208)
T ss_dssp             EEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CCCTTT
T ss_pred             EEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccccCcc
Confidence            34699999999999999999999889999986653  233222                                     


Q ss_pred             --EEEEEEeeCCCCccce------------EEEEECCChhhHHHHHHHHHHHHHh
Q psy2967          60 --VTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNELHALIEK  100 (101)
Q Consensus        60 --~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf~~~~~~~~~i~~~  100 (101)
                        ..+.+||++|++++..            ++|||++++.+++++..|+.++.+.
T Consensus        91 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~  145 (208)
T 3clv_A           91 CNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS  145 (208)
T ss_dssp             CEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred             ceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh
Confidence              8999999999987765            9999999999999999999988753

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.71  E-value=1.9e-17  Score=103.49  Aligned_cols=81  Identities=17%  Similarity=0.250  Sum_probs=68.4

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      +.+|++|||||||++++..+.+...+.||++..+..   +.+..+.+.+||++|+++++.            ++|||+++
T Consensus         9 ~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~   88 (186)
T 1mh1_A            9 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVS   88 (186)
T ss_dssp             EEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTC
T ss_pred             EEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCC
Confidence            346999999999999999999988889998866532   455678899999999988765            89999999


Q ss_pred             hhhHHHHH-HHHHHHHH
Q psy2967          84 TDKLEASR-NELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~-~~~~~i~~   99 (101)
                      +.+|+++. .|+..+.+
T Consensus        89 ~~s~~~~~~~~~~~~~~  105 (186)
T 1mh1_A           89 PASFENVRAKWYPEVRH  105 (186)
T ss_dssp             HHHHHHHHHTHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHH
Confidence            99999997 68887764

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.71  E-value=1.8e-17  Score=105.08  Aligned_cols=80  Identities=18%  Similarity=0.373  Sum_probs=61.1

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEE--EE--ecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KI--TKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      .+|++|||||||++++..+.+...+.+|++.++.  .+  .+..+.+.+||++|+++++.            |+|||+++
T Consensus        31 vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~  110 (192)
T 2il1_A           31 IIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITK  110 (192)
T ss_dssp             EECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTC
T ss_pred             EECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcC
Confidence            3599999999999999999988888899886653  33  34458999999999998765            99999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      +.+|+++..|+..+..
T Consensus       111 ~~s~~~~~~~~~~i~~  126 (192)
T 2il1_A          111 KETFDDLPKWMKMIDK  126 (192)
T ss_dssp             HHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999887754

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.71  E-value=3.3e-17  Score=102.68  Aligned_cols=81  Identities=15%  Similarity=0.226  Sum_probs=66.7

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      +.+|++|||||||++++.++.+...+.+|.+..+..   +++..+.+.+||++|+++++.            ++|||+++
T Consensus         8 ~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~   87 (189)
T 4dsu_A            8 VVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINN   87 (189)
T ss_dssp             EEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTC
T ss_pred             EEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCC
Confidence            346999999999999999999988888888755533   445668899999999988766            89999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      +.+|+.+..|+.++.+
T Consensus        88 ~~s~~~~~~~~~~~~~  103 (189)
T 4dsu_A           88 TKSFEDIHHYREQIKR  103 (189)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988875

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.71  E-value=1.7e-17  Score=105.47  Aligned_cols=81  Identities=19%  Similarity=0.301  Sum_probs=40.5

Q ss_pred             EeccCCCcceeeeeccccC--cCCCCCCCccceEE--EEEe--cC--cEEEEEEeeCCCCccce------------EEEE
Q psy2967          20 NMRKITKGNVTIWPVPLSG--QFSQDMIPTVGFNM--RKIT--KG--NVTIKVWDIGGQPRFRS------------IYMV   79 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~--~~~~~~~~t~~~~~--~~~~--~~--~~~~~i~D~~G~~~~~~------------i~v~   79 (101)
                      .+|++|||||||++++..+  .+...+.||++.++  ..+.  +.  .+.+.+||++|+++++.            |+||
T Consensus        25 v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~  104 (208)
T 2yc2_C           25 VVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVF  104 (208)
T ss_dssp             EC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEE
T ss_pred             EECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEE
Confidence            3599999999999999998  88888999998554  3343  33  78999999999987654            9999


Q ss_pred             ECCChhhHHHHHHHHHHHHHh
Q psy2967          80 DAADTDKLEASRNELHALIEK  100 (101)
Q Consensus        80 d~~~~~sf~~~~~~~~~i~~~  100 (101)
                      |++++.+|+++..|+.++.+.
T Consensus       105 d~~~~~s~~~~~~~~~~i~~~  125 (208)
T 2yc2_C          105 DVSSMESFESCKAWFELLKSA  125 (208)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999988753

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.71  E-value=1.7e-17  Score=103.10  Aligned_cols=80  Identities=18%  Similarity=0.330  Sum_probs=68.5

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      .+|+++||||||++++..+.+...+.+|.+.++.  .  +....+.+.+||++|+++++.            ++|||+++
T Consensus        20 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~   99 (179)
T 1z0f_A           20 IIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR   99 (179)
T ss_dssp             EECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTC
T ss_pred             EECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcC
Confidence            3599999999999999999998888899886543  2  344568999999999988765            99999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      +.+++++..|+.++..
T Consensus       100 ~~s~~~~~~~~~~~~~  115 (179)
T 1z0f_A          100 RSTYNHLSSWLTDARN  115 (179)
T ss_dssp             HHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988764

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.70  E-value=1.3e-17  Score=108.03  Aligned_cols=81  Identities=20%  Similarity=0.382  Sum_probs=62.7

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--EEe--cCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KIT--KGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|+++||||||++++..+.+...+.||++.++.  .+.  +..+.+.+||++|+++++.            |+|||++
T Consensus        17 ~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~   96 (223)
T 3cpj_B           17 VLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDIS   96 (223)
T ss_dssp             EEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-C
T ss_pred             EEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCC
Confidence            34699999999999999999998888898885553  333  4458999999999998766            9999999


Q ss_pred             ChhhHHHHHHHHHHHHH
Q psy2967          83 DTDKLEASRNELHALIE   99 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~   99 (101)
                      ++.+|+++..|+.++..
T Consensus        97 ~~~s~~~~~~~l~~i~~  113 (223)
T 3cpj_B           97 KSSSYENCNHWLSELRE  113 (223)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999999999998865

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.70  E-value=1.9e-17  Score=106.75  Aligned_cols=81  Identities=16%  Similarity=0.245  Sum_probs=55.7

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      +.+|++|||||||++++..+.+...+.||++..+..   +++..+.+.+||++|+++++.            ++|||+++
T Consensus        38 ~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~  117 (214)
T 2j1l_A           38 VLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTS  117 (214)
T ss_dssp             EEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEEEEETTC
T ss_pred             EEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcC
Confidence            345999999999999999999988888998866532   445668999999999987765            99999999


Q ss_pred             hhhHHHHH-HHHHHHHH
Q psy2967          84 TDKLEASR-NELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~-~~~~~i~~   99 (101)
                      +.+|+++. .|+.++.+
T Consensus       118 ~~s~~~~~~~~~~~~~~  134 (214)
T 2j1l_A          118 PNSFDNIFNRWYPEVNH  134 (214)
T ss_dssp             HHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999997 68887764

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.70  E-value=1.2e-17  Score=106.38  Aligned_cols=81  Identities=17%  Similarity=0.364  Sum_probs=60.8

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|++|||||||++++..+.+...+.+|++.++.  .  +++..+.+.+||++|+++++.            |+|||++
T Consensus        32 ~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~  111 (199)
T 2p5s_A           32 VLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVT  111 (199)
T ss_dssp             EEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETT
T ss_pred             EEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECC
Confidence            34699999999999999999988888898886543  2  445568899999999998765            9999999


Q ss_pred             ChhhHHHHHHHHHHHHH
Q psy2967          83 DTDKLEASRNELHALIE   99 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~   99 (101)
                      ++.+|+++..|+..+.+
T Consensus       112 ~~~s~~~~~~~~~~i~~  128 (199)
T 2p5s_A          112 CEKSFLNIREWVDMIED  128 (199)
T ss_dssp             CHHHHHTHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHH
Confidence            99999999999987754

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.70  E-value=1.4e-17  Score=103.62  Aligned_cols=81  Identities=21%  Similarity=0.426  Sum_probs=60.2

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEE--EEEe---cCcEEEEEEeeCCCCccce------------EEEEEC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM--RKIT---KGNVTIKVWDIGGQPRFRS------------IYMVDA   81 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~--~~~~---~~~~~~~i~D~~G~~~~~~------------i~v~d~   81 (101)
                      +.+|++|||||||++++..+.+...+.||++.++  ..+.   ...+.+.+||++|+++++.            ++|||+
T Consensus        12 ~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~   91 (182)
T 1ky3_A           12 IILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDV   91 (182)
T ss_dssp             EEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEET
T ss_pred             EEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEEC
Confidence            3469999999999999999998888889887544  3333   3468999999999988765            999999


Q ss_pred             CChhhHHHHHHHHHHHHH
Q psy2967          82 ADTDKLEASRNELHALIE   99 (101)
Q Consensus        82 ~~~~sf~~~~~~~~~i~~   99 (101)
                      +++.+|+++..|+.++..
T Consensus        92 ~~~~s~~~~~~~~~~~~~  109 (182)
T 1ky3_A           92 TNASSFENIKSWRDEFLV  109 (182)
T ss_dssp             TCHHHHHTHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHH
Confidence            999999999999988765

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.70  E-value=2.8e-17  Score=101.36  Aligned_cols=80  Identities=21%  Similarity=0.278  Sum_probs=68.2

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      .+|++|||||||++++..+.+...+.||++..+..   .....+.+.+||++|+++++.            ++|||++++
T Consensus         8 v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~   87 (172)
T 2erx_A            8 VFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSR   87 (172)
T ss_dssp             EECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCH
T ss_pred             EECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCH
Confidence            46999999999999999999888888998876643   344568899999999997765            999999999


Q ss_pred             hhHHHHHHHHHHHHH
Q psy2967          85 DKLEASRNELHALIE   99 (101)
Q Consensus        85 ~sf~~~~~~~~~i~~   99 (101)
                      .+++++..|+.++.+
T Consensus        88 ~~~~~~~~~~~~i~~  102 (172)
T 2erx_A           88 QSLEELKPIYEQICE  102 (172)
T ss_dssp             HHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999877764

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.70  E-value=3.9e-17  Score=103.64  Aligned_cols=80  Identities=20%  Similarity=0.220  Sum_probs=68.3

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      +.+|++|||||||++++..+.+...+.||++..+..   ++...+.+.+||++|+++ +.            ++|||+++
T Consensus        32 ~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~  110 (196)
T 2atv_A           32 AIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITD  110 (196)
T ss_dssp             EEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTC
T ss_pred             EEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcC
Confidence            345999999999999999999988899999877643   345568999999999986 22            99999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      +++|+++..|+.++.+
T Consensus       111 ~~s~~~~~~~~~~i~~  126 (196)
T 2atv_A          111 RGSFEEVLPLKNILDE  126 (196)
T ss_dssp             HHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988765

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.70  E-value=6.1e-18  Score=105.61  Aligned_cols=81  Identities=20%  Similarity=0.296  Sum_probs=54.6

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      +.+|++|||||||++++..+.+...+.||++..+..   +.+..+.+.+||++|+++++.            ++|||+++
T Consensus        12 ~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~   91 (182)
T 3bwd_D           12 VTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS   91 (182)
T ss_dssp             EEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTC
T ss_pred             EEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCC
Confidence            346999999999999999999988889998865532   445668889999999988765            99999999


Q ss_pred             hhhHHHHH-HHHHHHHH
Q psy2967          84 TDKLEASR-NELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~-~~~~~i~~   99 (101)
                      +.+|+++. .|+.++..
T Consensus        92 ~~s~~~~~~~~~~~~~~  108 (182)
T 3bwd_D           92 KASYENVSKKWIPELKH  108 (182)
T ss_dssp             HHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999997 68887765

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.69  E-value=2.8e-17  Score=101.26  Aligned_cols=79  Identities=13%  Similarity=0.061  Sum_probs=53.3

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEE---EEecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      .+|++|||||||++++.+..+. ...++.+..+.   .+....+.+.+||++|+++++.            ++|||++++
T Consensus         7 ~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~   85 (166)
T 3q72_A            7 LLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDK   85 (166)
T ss_dssp             EEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEETTCH
T ss_pred             EECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCH
Confidence            3599999999999999976654 44566665543   2556678999999999998765            899999999


Q ss_pred             hhHHHHHHHHHHHHH
Q psy2967          85 DKLEASRNELHALIE   99 (101)
Q Consensus        85 ~sf~~~~~~~~~i~~   99 (101)
                      ++|+++..|+.++.+
T Consensus        86 ~s~~~~~~~~~~~~~  100 (166)
T 3q72_A           86 GSFEKASELRVQLRR  100 (166)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998875

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.69  E-value=5.9e-17  Score=103.77  Aligned_cols=81  Identities=16%  Similarity=0.233  Sum_probs=67.2

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      +.+|++|||||||++++..+.+...+.+|++..+..   +++..+.+.+||++|+++++.            ++|||+++
T Consensus        34 ~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~  113 (204)
T 4gzl_A           34 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVS  113 (204)
T ss_dssp             EEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC
T ss_pred             EEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCC
Confidence            346999999999999999999988889998766542   456678899999999988765            99999999


Q ss_pred             hhhHHHHH-HHHHHHHH
Q psy2967          84 TDKLEASR-NELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~-~~~~~i~~   99 (101)
                      +.+|+++. .|+..+.+
T Consensus       114 ~~s~~~~~~~~~~~~~~  130 (204)
T 4gzl_A          114 PASFENVRAKWYPEVRH  130 (204)
T ss_dssp             HHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999997 78877764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.69  E-value=2.1e-17  Score=105.42  Aligned_cols=81  Identities=19%  Similarity=0.120  Sum_probs=62.3

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEE--EE--EecCcEEEEEEeeCCCCccce-------------EEEEEC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM--RK--ITKGNVTIKVWDIGGQPRFRS-------------IYMVDA   81 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~--~~--~~~~~~~~~i~D~~G~~~~~~-------------i~v~d~   81 (101)
                      +.+|++|||||||+++|.+..+...+.|+.+.+.  ..  +++..+.+.+||++|+++++.             |+|||+
T Consensus        27 ~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~  106 (195)
T 3cbq_A           27 MLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSV  106 (195)
T ss_dssp             EEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEET
T ss_pred             EEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEEC
Confidence            3469999999999999986554433445544322  22  455678999999999987543             889999


Q ss_pred             CChhhHHHHHHHHHHHHH
Q psy2967          82 ADTDKLEASRNELHALIE   99 (101)
Q Consensus        82 ~~~~sf~~~~~~~~~i~~   99 (101)
                      +++++|+++..|+.++.+
T Consensus       107 ~~~~s~~~~~~~~~~i~~  124 (195)
T 3cbq_A          107 TDRRSFSKVPETLLRLRA  124 (195)
T ss_dssp             TCHHHHHTHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            999999999999998865

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.69  E-value=7.9e-17  Score=98.56  Aligned_cols=81  Identities=15%  Similarity=0.218  Sum_probs=68.5

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      +.+|++|||||||++++..+.+...+.+|.+..+..   +....+.+.+||++|+++++.            ++|||+++
T Consensus         7 ~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~   86 (166)
T 2ce2_X            7 VVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINN   86 (166)
T ss_dssp             EEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTC
T ss_pred             EEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCC
Confidence            346999999999999999999888888888866532   345568899999999987665            99999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      +.+++++..|+.++.+
T Consensus        87 ~~~~~~~~~~~~~i~~  102 (166)
T 2ce2_X           87 TKSFEDIHQYREQIKR  102 (166)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988765

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.69  E-value=4.1e-17  Score=104.28  Aligned_cols=81  Identities=21%  Similarity=0.453  Sum_probs=68.7

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--EEe--cCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KIT--KGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|+++||||||++++..+.+...+.||++.++.  .+.  +..+.+.+||++|+++++.            ++|||++
T Consensus        24 ~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~  103 (213)
T 3cph_A           24 LLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVT  103 (213)
T ss_dssp             EEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETT
T ss_pred             EEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECC
Confidence            34699999999999999999988888899886553  333  3448999999999988775            9999999


Q ss_pred             ChhhHHHHHHHHHHHHH
Q psy2967          83 DTDKLEASRNELHALIE   99 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~   99 (101)
                      ++.+|+++..|+.++..
T Consensus       104 ~~~s~~~~~~~~~~i~~  120 (213)
T 3cph_A          104 DERTFTNIKQWFKTVNE  120 (213)
T ss_dssp             CHHHHHTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999999999988765

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.69  E-value=5e-17  Score=104.11  Aligned_cols=81  Identities=19%  Similarity=0.267  Sum_probs=61.6

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      +.+|++|||||||++++..+.+...+.||++..+..   +.+..+.+.+||++|+++++.            ++|||+++
T Consensus        29 ~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~  108 (207)
T 2fv8_A           29 VVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDS  108 (207)
T ss_dssp             EEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTC
T ss_pred             EEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCC
Confidence            345999999999999999999988888998876632   344568999999999987765            89999999


Q ss_pred             hhhHHHH-HHHHHHHHH
Q psy2967          84 TDKLEAS-RNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~-~~~~~~i~~   99 (101)
                      +++|+++ ..|+..+.+
T Consensus       109 ~~s~~~~~~~~~~~~~~  125 (207)
T 2fv8_A          109 PDSLENIPEKWVPEVKH  125 (207)
T ss_dssp             HHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            9999999 678877654

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.68  E-value=1.6e-17  Score=105.70  Aligned_cols=81  Identities=20%  Similarity=0.444  Sum_probs=66.9

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--EE--ecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KI--TKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|++|||||||++++..+.+...+.+|++.++.  .+  .+..+.+.+||++|+++++.            ++|||++
T Consensus        37 ~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~  116 (199)
T 3l0i_B           37 LLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT  116 (199)
T ss_dssp             EEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CC
T ss_pred             EEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECC
Confidence            34699999999999999999988877888775543  33  34458999999999988765            8999999


Q ss_pred             ChhhHHHHHHHHHHHHH
Q psy2967          83 DTDKLEASRNELHALIE   99 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~   99 (101)
                      ++.+|+++..|+.++..
T Consensus       117 ~~~s~~~~~~~~~~i~~  133 (199)
T 3l0i_B          117 DQESFNNVKQWLQEIDR  133 (199)
T ss_dssp             CSHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999999999988754

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.68  E-value=1.5e-17  Score=106.21  Aligned_cols=81  Identities=21%  Similarity=0.372  Sum_probs=57.7

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--EE--ecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KI--TKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|++|||||||++++..+.+...+.||++.++.  .+  .+..+.+.+||++|+++++.            |+|||++
T Consensus        29 ~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~  108 (200)
T 2o52_A           29 LVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDIT  108 (200)
T ss_dssp             EEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETT
T ss_pred             EEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECc
Confidence            34699999999999999999998888888885543  33  34458999999999987665            9999999


Q ss_pred             ChhhHHHHHHHHHHHHH
Q psy2967          83 DTDKLEASRNELHALIE   99 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~   99 (101)
                      ++.+|+++..|+.++..
T Consensus       109 ~~~s~~~~~~~~~~~~~  125 (200)
T 2o52_A          109 SRETYNSLAAWLTDART  125 (200)
T ss_dssp             CHHHHHTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999999999988764

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.68  E-value=8.8e-17  Score=103.37  Aligned_cols=83  Identities=18%  Similarity=0.208  Sum_probs=69.2

Q ss_pred             eeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEEE---e--cCcEEEEEEeeCCCCccce------------EEEE
Q psy2967          17 VGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKI---T--KGNVTIKVWDIGGQPRFRS------------IYMV   79 (101)
Q Consensus        17 ~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~---~--~~~~~~~i~D~~G~~~~~~------------i~v~   79 (101)
                      .-+.+|++|||||||++++.++.+...+.+|.+......   .  ...+.+.+||++|+++++.            |+||
T Consensus        13 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (218)
T 4djt_A           13 KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFF   92 (218)
T ss_dssp             EEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEE
Confidence            334469999999999999999998888889988766432   2  2238999999999988765            9999


Q ss_pred             ECCChhhHHHHHHHHHHHHH
Q psy2967          80 DAADTDKLEASRNELHALIE   99 (101)
Q Consensus        80 d~~~~~sf~~~~~~~~~i~~   99 (101)
                      |++++.+|+++..|+.++..
T Consensus        93 d~~~~~s~~~~~~~~~~~~~  112 (218)
T 4djt_A           93 DVTSRITCQNLARWVKEFQA  112 (218)
T ss_dssp             ETTCHHHHHTHHHHHHHHHH
T ss_pred             eCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999988764

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.68  E-value=4.1e-17  Score=104.08  Aligned_cols=81  Identities=20%  Similarity=0.254  Sum_probs=67.6

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE-E--EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR-K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      +.+|++|||||||++++..+.+...+.||++.++. .  +.+..+.+.+||++|+++++.            ++|||+++
T Consensus        29 ~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~  108 (201)
T 2gco_A           29 VIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS  108 (201)
T ss_dssp             EEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTC
T ss_pred             EEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCC
Confidence            33599999999999999999998888999886653 2  345568999999999987765            99999999


Q ss_pred             hhhHHHH-HHHHHHHHH
Q psy2967          84 TDKLEAS-RNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~-~~~~~~i~~   99 (101)
                      +++|+++ ..|+..+.+
T Consensus       109 ~~s~~~~~~~~~~~~~~  125 (201)
T 2gco_A          109 PDSLENIPEKWTPEVKH  125 (201)
T ss_dssp             HHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            9999999 678777654

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.68  E-value=1.3e-16  Score=100.51  Aligned_cols=81  Identities=12%  Similarity=0.186  Sum_probs=63.8

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      +.+|++|||||||++++..+.+...+.+|.+..+..   +....+.+.+||++|++++..            ++|||+++
T Consensus        25 ~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~  104 (190)
T 3con_A           25 VVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINN  104 (190)
T ss_dssp             EEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEEEEETTC
T ss_pred             EEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcC
Confidence            345999999999999999999888888888866542   344568899999999987655            89999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      +.+|+++..|+.++..
T Consensus       105 ~~s~~~~~~~~~~i~~  120 (190)
T 3con_A          105 SKSFADINLYREQIKR  120 (190)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988764

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.68  E-value=6e-18  Score=107.04  Aligned_cols=81  Identities=20%  Similarity=0.428  Sum_probs=69.5

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|++|||||||++++..+.+...+.+|.+.++.  .  +....+.+.+||++|+++++.            ++|||++
T Consensus        27 ~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~  106 (191)
T 3dz8_A           27 LIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDIT  106 (191)
T ss_dssp             EEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETT
T ss_pred             EEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECc
Confidence            34699999999999999999988888888875543  2  456789999999999987765            9999999


Q ss_pred             ChhhHHHHHHHHHHHHH
Q psy2967          83 DTDKLEASRNELHALIE   99 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~   99 (101)
                      ++++|+++..|+.++..
T Consensus       107 ~~~s~~~~~~~~~~i~~  123 (191)
T 3dz8_A          107 NEESFNAVQDWATQIKT  123 (191)
T ss_dssp             CHHHHHTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999999999998865

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.68  E-value=2.1e-17  Score=104.15  Aligned_cols=80  Identities=19%  Similarity=0.313  Sum_probs=57.4

Q ss_pred             EeccCCCcceeeeeccccC--cCCCCCCCccceEEEEE-------ecCcEEEEEEeeCCCCccce------------EEE
Q psy2967          20 NMRKITKGNVTIWPVPLSG--QFSQDMIPTVGFNMRKI-------TKGNVTIKVWDIGGQPRFRS------------IYM   78 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~--~~~~~~~~t~~~~~~~~-------~~~~~~~~i~D~~G~~~~~~------------i~v   78 (101)
                      .+|++|||||||++++.+.  .+...+.||++.++...       ....+.+.+||++|+++++.            ++|
T Consensus         7 ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   86 (184)
T 2zej_A            7 IVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAV   86 (184)
T ss_dssp             EESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSEEEEEE
T ss_pred             EECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCcEEEEE
Confidence            4699999999999999984  56667889999887542       23578999999999987665            789


Q ss_pred             EECCCh-hhHHHHHHHHHHHHH
Q psy2967          79 VDAADT-DKLEASRNELHALIE   99 (101)
Q Consensus        79 ~d~~~~-~sf~~~~~~~~~i~~   99 (101)
                      ||++++ .+|+++..|+.++..
T Consensus        87 ~d~~~~~~s~~~~~~~~~~~~~  108 (184)
T 2zej_A           87 YDLSKGQAEVDAMKPWLFNIKA  108 (184)
T ss_dssp             EEGGGCHHHHHTHHHHHHHHHH
T ss_pred             EeCCcchhHHHHHHHHHHHHHh
Confidence            999997 589999999998764

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.67  E-value=5.4e-17  Score=100.19  Aligned_cols=81  Identities=17%  Similarity=0.078  Sum_probs=54.6

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEE--EE--EecCcEEEEEEeeCCCCccce-------------EEEEECC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM--RK--ITKGNVTIKVWDIGGQPRFRS-------------IYMVDAA   82 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~--~~--~~~~~~~~~i~D~~G~~~~~~-------------i~v~d~~   82 (101)
                      .+|++|||||||++++.+..+...+.++.+.+.  ..  +++..+.+.+||++|+++++.             ++|||++
T Consensus         7 ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~   86 (169)
T 3q85_A            7 LVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVT   86 (169)
T ss_dssp             EECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEEEETT
T ss_pred             EECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECC
Confidence            369999999999999987766655444444332  22  445568999999999987653             9999999


Q ss_pred             ChhhHHHHHHHHHHHHHh
Q psy2967          83 DTDKLEASRNELHALIEK  100 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~~  100 (101)
                      ++++|+++..|+.++.+.
T Consensus        87 ~~~s~~~~~~~~~~~~~~  104 (169)
T 3q85_A           87 DRRSFSKVPETLLRLRAG  104 (169)
T ss_dssp             CHHHHHTHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhc
Confidence            999999999999988763

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.67  E-value=6.8e-17  Score=102.18  Aligned_cols=81  Identities=19%  Similarity=0.272  Sum_probs=68.2

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      +.+|++|||||||++++..+.+...+.||++..+..   .+...+.+.+||++|+++++.            ++|||+++
T Consensus        12 ~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~   91 (199)
T 2gf0_A           12 VVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTS   91 (199)
T ss_dssp             EEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTC
T ss_pred             EEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcC
Confidence            346999999999999999999988888998876643   345568999999999987765            99999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      +.+|+++..|+..+.+
T Consensus        92 ~~s~~~~~~~~~~i~~  107 (199)
T 2gf0_A           92 KQSLEELGPIYKLIVQ  107 (199)
T ss_dssp             HHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999888876654

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.67  E-value=8e-17  Score=110.46  Aligned_cols=80  Identities=31%  Similarity=0.625  Sum_probs=66.8

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhh
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDK   86 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~s   86 (101)
                      +.+|+++||||||++++..+.+.+ ..||++..+..+..+++.+.+|||+|+++++.            |+|||++++++
T Consensus       169 ~ivG~~~vGKSsLl~~l~~~~~~~-~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s  247 (329)
T 3o47_A          169 LMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER  247 (329)
T ss_dssp             EEEESTTSSHHHHHHHTCSSCCEE-EEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSS
T ss_pred             EEECCCCccHHHHHHHHhCCCCCC-cccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHH
Confidence            346999999999999999998874 45899999888888999999999999998876            99999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy2967          87 LEASRNELHALIE   99 (101)
Q Consensus        87 f~~~~~~~~~i~~   99 (101)
                      |+++..|+.+++.
T Consensus       248 ~~~~~~~~~~~~~  260 (329)
T 3o47_A          248 VNEAREELMRMLA  260 (329)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999888764

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.66  E-value=2.1e-17  Score=113.51  Aligned_cols=64  Identities=17%  Similarity=0.246  Sum_probs=52.5

Q ss_pred             EeccCCCcceeeeeccccCcCCC---CCCCccceEEEEEecCcEEEEEEeeCCCCccc------e---------EEEEEC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQ---DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR------S---------IYMVDA   81 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~------~---------i~v~d~   81 (101)
                      .+|++|||||||++++.++.+..   .+.||+|+++..+ ...++++||||+||++|+      .         |+|||+
T Consensus         4 llGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v-~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Di   82 (331)
T 3r7w_B            4 LMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF-STLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDS   82 (331)
T ss_dssp             EECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE-CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCC
T ss_pred             EECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE-ccEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEEC
Confidence            46999999999999887654432   3679999888776 356999999999999984      1         999999


Q ss_pred             CCh
Q psy2967          82 ADT   84 (101)
Q Consensus        82 ~~~   84 (101)
                      +++
T Consensus        83 td~   85 (331)
T 3r7w_B           83 QDE   85 (331)
T ss_dssp             SSC
T ss_pred             Cch
Confidence            998

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.66  E-value=2.2e-17  Score=106.11  Aligned_cols=80  Identities=28%  Similarity=0.474  Sum_probs=67.3

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecC----------cEEEEEEeeCCCCccce---------
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKG----------NVTIKVWDIGGQPRFRS---------   75 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~----------~~~~~i~D~~G~~~~~~---------   75 (101)
                      +.+|+++||||||++++..+.+...+.+|++.++..    +...          .+.+.+||++|+++++.         
T Consensus        29 ~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~  108 (217)
T 2f7s_A           29 LALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDA  108 (217)
T ss_dssp             EEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHHHTTC
T ss_pred             EEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHHhcCC
Confidence            346999999999999999999988888998876532    3333          68999999999987765         


Q ss_pred             ---EEEEECCChhhHHHHHHHHHHHH
Q psy2967          76 ---IYMVDAADTDKLEASRNELHALI   98 (101)
Q Consensus        76 ---i~v~d~~~~~sf~~~~~~~~~i~   98 (101)
                         |+|||++++.+|+++..|+.++.
T Consensus       109 d~iilV~D~~~~~s~~~~~~~l~~i~  134 (217)
T 2f7s_A          109 MGFLLMFDLTSQQSFLNVRNWMSQLQ  134 (217)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHTCC
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHH
Confidence               99999999999999999988764

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.66  E-value=3.4e-16  Score=99.34  Aligned_cols=80  Identities=18%  Similarity=0.333  Sum_probs=67.0

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      .+|++|||||||++++.+..+...+.||++.++.  .  +++..+.+.+||++|+++++.            ++|||+++
T Consensus        34 lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~  113 (191)
T 1oix_A           34 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAK  113 (191)
T ss_dssp             EEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTC
T ss_pred             EECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcC
Confidence            3699999999999999999988889999987663  2  344557888999999987655            88999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      ..+|+++..|+.++.+
T Consensus       114 ~~s~~~~~~~~~~~~~  129 (191)
T 1oix_A          114 HLTYENVERWLKELRD  129 (191)
T ss_dssp             HHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999889877653

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.64  E-value=2e-16  Score=97.97  Aligned_cols=79  Identities=14%  Similarity=0.107  Sum_probs=55.3

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEE--EE--EecCcEEEEEEeeCCCCcc--ce------------EEEEEC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM--RK--ITKGNVTIKVWDIGGQPRF--RS------------IYMVDA   81 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~--~~--~~~~~~~~~i~D~~G~~~~--~~------------i~v~d~   81 (101)
                      .+|++|||||||++++.++.+... .++.+.+.  ..  +++..+.+.+||++|++++  +.            ++|||+
T Consensus         9 i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~   87 (175)
T 2nzj_A            9 LLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSI   87 (175)
T ss_dssp             EECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEET
T ss_pred             EECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEEC
Confidence            469999999999999998887643 34555443  22  4455678999999999873  22            999999


Q ss_pred             CChhhHHHHHHHHHHHHH
Q psy2967          82 ADTDKLEASRNELHALIE   99 (101)
Q Consensus        82 ~~~~sf~~~~~~~~~i~~   99 (101)
                      +++.+|+++..|+.++.+
T Consensus        88 ~~~~s~~~~~~~~~~l~~  105 (175)
T 2nzj_A           88 ADRGSFESASELRIQLRR  105 (175)
T ss_dssp             TCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            999999999999988764

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.64  E-value=3.3e-16  Score=99.75  Aligned_cols=80  Identities=19%  Similarity=0.346  Sum_probs=64.6

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      .+|++|||||||++++.+..+...+.||++.++.  .  +.+..+.+.+||++|+++++.            ++|||+++
T Consensus        10 lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~   89 (199)
T 2f9l_A           10 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAK   89 (199)
T ss_dssp             EESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTC
T ss_pred             EECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcC
Confidence            3699999999999999999988888899886553  2  345568899999999988765            88999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      ..+|+++..|+.++..
T Consensus        90 ~~s~~~~~~~~~~~~~  105 (199)
T 2f9l_A           90 HLTYENVERWLKELRD  105 (199)
T ss_dssp             HHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999877653

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.63  E-value=1.2e-16  Score=100.61  Aligned_cols=78  Identities=13%  Similarity=0.210  Sum_probs=61.7

Q ss_pred             eEeccCCCcceeeeeccccCcCCCC-----------CCCccceEEEE-----EecCcEEEEEEeeCCCCccce-------
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQD-----------MIPTVGFNMRK-----ITKGNVTIKVWDIGGQPRFRS-------   75 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~-----------~~~t~~~~~~~-----~~~~~~~~~i~D~~G~~~~~~-------   75 (101)
                      +.+|++|||||||+ +++.+.+...           +.||++.++..     +++..+.+.+||++|+++++.       
T Consensus        18 ~vvG~~~~GKssL~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   96 (198)
T 3t1o_A           18 VYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILR   96 (198)
T ss_dssp             EEECSTTSSHHHHH-HHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHHHHTT
T ss_pred             EEECCCCCCHHHHH-HHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHHHHHh
Confidence            34699999999999 5555666655           45677777643     345678999999999998776       


Q ss_pred             -----EEEEECC------ChhhHHHHHHHHHHH
Q psy2967          76 -----IYMVDAA------DTDKLEASRNELHAL   97 (101)
Q Consensus        76 -----i~v~d~~------~~~sf~~~~~~~~~i   97 (101)
                           |+|||++      +.++|+++..|+.++
T Consensus        97 ~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~  129 (198)
T 3t1o_A           97 GVDGIVFVADSAPNRLRANAESMRNMRENLAEY  129 (198)
T ss_dssp             TCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHT
T ss_pred             cCCEEEEEEECCcchhhHhHHHHHHHHHHHHhh
Confidence                 9999999      678888998998876

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.62  E-value=8.5e-16  Score=103.94  Aligned_cols=81  Identities=15%  Similarity=0.217  Sum_probs=68.2

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      +.+|++|||||||++++..+.+...+.+|++..+..   +++..+.+.+||++|+++++.            ++|||+++
T Consensus       159 ~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~  238 (332)
T 2wkq_A          159 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVS  238 (332)
T ss_dssp             EEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTC
T ss_pred             EEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCC
Confidence            446999999999999999999988899999866643   345567888999999988765            89999999


Q ss_pred             hhhHHHHH-HHHHHHHH
Q psy2967          84 TDKLEASR-NELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~-~~~~~i~~   99 (101)
                      +.+|+++. .|+..+..
T Consensus       239 ~~s~~~~~~~~~~~~~~  255 (332)
T 2wkq_A          239 PASFHHVRAKWYPEVRH  255 (332)
T ss_dssp             HHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999997 68877764

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.62  E-value=7.2e-16  Score=104.77  Aligned_cols=78  Identities=26%  Similarity=0.425  Sum_probs=63.7

Q ss_pred             EeccCCCcceeeeeccccC--cCCC-CCCCccceEEEEEe-cCcEEEEEEeeCCCCcc-----ce------------EEE
Q psy2967          20 NMRKITKGNVTIWPVPLSG--QFSQ-DMIPTVGFNMRKIT-KGNVTIKVWDIGGQPRF-----RS------------IYM   78 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~--~~~~-~~~~t~~~~~~~~~-~~~~~~~i~D~~G~~~~-----~~------------i~v   78 (101)
                      .+|++|||||||++++.++  .+.. .+.+|++..+..+. .+++.+.+||++|++++     +.            |+|
T Consensus         8 lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V   87 (307)
T 3r7w_A            8 LMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHV   87 (307)
T ss_dssp             EECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEE
T ss_pred             EECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEE
Confidence            3699999999999999877  4432 57899998887655 35899999999999987     22            999


Q ss_pred             EECCChhhHHHHHHHHHHH
Q psy2967          79 VDAADTDKLEASRNELHAL   97 (101)
Q Consensus        79 ~d~~~~~sf~~~~~~~~~i   97 (101)
                      ||++++++|+++..|...+
T Consensus        88 ~D~t~~~s~~~l~~~~~~l  106 (307)
T 3r7w_A           88 FDVESTEVLKDIEIFAKAL  106 (307)
T ss_dssp             EETTCSCHHHHHHHHHHHH
T ss_pred             EECCChhhHHHHHHHHHHH
Confidence            9999999999997775544

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.42  E-value=2.9e-17  Score=104.79  Aligned_cols=80  Identities=18%  Similarity=0.253  Sum_probs=66.5

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      .+|++|||||||++++..+.+...+.+|++..+..   +++..+.+.+||++|+++++.            ++|||++++
T Consensus        35 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~  114 (204)
T 3th5_A           35 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSP  114 (204)
Confidence            35999999999999999999988888888765532   456678899999999988765            899999999


Q ss_pred             hhHHHHH-HHHHHHHH
Q psy2967          85 DKLEASR-NELHALIE   99 (101)
Q Consensus        85 ~sf~~~~-~~~~~i~~   99 (101)
                      .+|+++. .|+..+..
T Consensus       115 ~s~~~~~~~~~~~l~~  130 (204)
T 3th5_A          115 ASFENVRAKWYPEVRH  130 (204)
Confidence            9999997 78776653

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.61  E-value=7.3e-16  Score=99.95  Aligned_cols=84  Identities=13%  Similarity=0.095  Sum_probs=60.3

Q ss_pred             ceeee-EeccCCCcceeeeeccccCc--CCCCCCCccceEE--EE--EecCcEEEEEEeeCCCCc-cce-----------
Q psy2967          15 PTVGF-NMRKITKGNVTIWPVPLSGQ--FSQDMIPTVGFNM--RK--ITKGNVTIKVWDIGGQPR-FRS-----------   75 (101)
Q Consensus        15 ~~~g~-~vG~~~vGKtsl~~~~~~~~--~~~~~~~t~~~~~--~~--~~~~~~~~~i~D~~G~~~-~~~-----------   75 (101)
                      +.+.+ .+|++|||||||+++|.+..  +...+ ++++.++  ..  +++..+.+.+||++|++. ++.           
T Consensus        36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~  114 (211)
T 2g3y_A           36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA  114 (211)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence            33444 36999999999999998643  44444 3455433  22  445567889999999886 221           


Q ss_pred             -EEEEECCChhhHHHHHHHHHHHHH
Q psy2967          76 -IYMVDAADTDKLEASRNELHALIE   99 (101)
Q Consensus        76 -i~v~d~~~~~sf~~~~~~~~~i~~   99 (101)
                       |+|||+++++||+++..|+.++.+
T Consensus       115 ~ilVydvt~~~sf~~~~~~~~~l~~  139 (211)
T 2g3y_A          115 YLIVYSITDRASFEKASELRIQLRR  139 (211)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHH
Confidence             999999999999999999887753

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.57  E-value=4.1e-15  Score=94.51  Aligned_cols=79  Identities=14%  Similarity=0.103  Sum_probs=55.6

Q ss_pred             EeccCCCcceeeeeccccC--cCCCCCCCccceEE--EE--EecCcEEEEEEeeCCCCcc-ce------------EEEEE
Q psy2967          20 NMRKITKGNVTIWPVPLSG--QFSQDMIPTVGFNM--RK--ITKGNVTIKVWDIGGQPRF-RS------------IYMVD   80 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~--~~~~~~~~t~~~~~--~~--~~~~~~~~~i~D~~G~~~~-~~------------i~v~d   80 (101)
                      .+|++|||||||+++|.+.  .+...+ ++++.++  ..  +++..+.+.+||++|++.. +.            ++|||
T Consensus        11 lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~d   89 (192)
T 2cjw_A           11 LIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYS   89 (192)
T ss_dssp             EECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEE
T ss_pred             EECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEE
Confidence            4699999999999999953  344443 3455333  22  4455678899999998652 21            99999


Q ss_pred             CCChhhHHHHHHHHHHHHH
Q psy2967          81 AADTDKLEASRNELHALIE   99 (101)
Q Consensus        81 ~~~~~sf~~~~~~~~~i~~   99 (101)
                      +++++||+++..|+..+.+
T Consensus        90 v~~~~s~~~~~~~~~~l~~  108 (192)
T 2cjw_A           90 ITDRASFEKASELRIQLRR  108 (192)
T ss_dssp             TTCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHH
Confidence            9999999999999877654

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.55  E-value=7.7e-15  Score=94.02  Aligned_cols=79  Identities=14%  Similarity=0.237  Sum_probs=60.2

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecC---cEEEEEEeeCCCCccce-------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKG---NVTIKVWDIGGQPRFRS-------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~i~D~~G~~~~~~-------------i~v~d~~   82 (101)
                      +.+|++|||||||++++..+.+.+.+.++ ..++..+..+   .+.+.+||++|+++++.             |+|||++
T Consensus        11 ~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~   89 (214)
T 2fh5_B           11 LFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSA   89 (214)
T ss_dssp             EEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETT
T ss_pred             EEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECC
Confidence            34699999999999999999988777654 4444444333   68999999999987653             9999999


Q ss_pred             Chh-hHHHHHHHHHHHH
Q psy2967          83 DTD-KLEASRNELHALI   98 (101)
Q Consensus        83 ~~~-sf~~~~~~~~~i~   98 (101)
                      +.+ ++.++..|+.+++
T Consensus        90 ~~~~~~~~~~~~~~~~~  106 (214)
T 2fh5_B           90 AFQREVKDVAEFLYQVL  106 (214)
T ss_dssp             THHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHH
Confidence            964 5777766665543

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.51  E-value=5.4e-15  Score=93.21  Aligned_cols=75  Identities=17%  Similarity=0.280  Sum_probs=56.7

Q ss_pred             EeccCCCcceeeeeccccCcCCC---CCCCccceEEEEEecCcEEEEEEeeCCCCccce----------------EEEEE
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQ---DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS----------------IYMVD   80 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------------i~v~d   80 (101)
                      .+|++|||||||++++..+.+..   .+.|+.+.     ......+.+||++|++.++.                ++|||
T Consensus        53 vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d  127 (193)
T 2ged_A           53 IAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-----DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVD  127 (193)
T ss_dssp             EECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEE
T ss_pred             EECCCCCCHHHHHHHHhcCCCCcccccCCCceee-----eecCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEE
Confidence            46999999999999999887654   23333332     23667899999999988753                89999


Q ss_pred             CC-ChhhHHHHHHHHHHHHH
Q psy2967          81 AA-DTDKLEASRNELHALIE   99 (101)
Q Consensus        81 ~~-~~~sf~~~~~~~~~i~~   99 (101)
                      ++ ++++|.++..|+.++++
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~  147 (193)
T 2ged_A          128 STVDPKKLTTTAEFLVDILS  147 (193)
T ss_dssp             TTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCchhHHHHHHHHHHHHh
Confidence            99 99999999999988764

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.49  E-value=5.9e-15  Score=94.78  Aligned_cols=75  Identities=17%  Similarity=0.290  Sum_probs=61.4

Q ss_pred             EeccCCCcceeeeeccccCcCCC---CCCCccceEEEEEecCcEEEEEEeeCCCCccce----------------EEEEE
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQ---DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS----------------IYMVD   80 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------------i~v~d   80 (101)
                      .+|++|||||||++++..+.+..   .+.|+++..     .....+.+||++|+++++.                |+|||
T Consensus        17 ~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D   91 (218)
T 1nrj_B           17 IAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-----YDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVD   91 (218)
T ss_dssp             EECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT-----GGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE-----eeCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEE
Confidence            46999999999999999887654   345554432     2667899999999988754                89999


Q ss_pred             CC-ChhhHHHHHHHHHHHHH
Q psy2967          81 AA-DTDKLEASRNELHALIE   99 (101)
Q Consensus        81 ~~-~~~sf~~~~~~~~~i~~   99 (101)
                      .+ ++++|.++..|+.++++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~  111 (218)
T 1nrj_B           92 STVDPKKLTTTAEFLVDILS  111 (218)
T ss_dssp             TTSCTTCCHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHh
Confidence            99 99999999999988875

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.48  E-value=2.1e-14  Score=91.15  Aligned_cols=76  Identities=25%  Similarity=0.368  Sum_probs=55.8

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEE------EEEe-cCcEEEEEEeeCCCCccc-------e--------EE
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM------RKIT-KGNVTIKVWDIGGQPRFR-------S--------IY   77 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~------~~~~-~~~~~~~i~D~~G~~~~~-------~--------i~   77 (101)
                      .+|++|||||||++++.+ .+...  +|++.+.      ..+. +..+.+.+||++|+++|.       .        |+
T Consensus        25 ~vG~~~vGKTsLi~~l~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~  101 (196)
T 3llu_A           25 LMGLRRSGKSSIQKVVFH-KMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIY  101 (196)
T ss_dssp             EEESTTSSHHHHHHHHHS-CCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEE
T ss_pred             EECCCCCCHHHHHHHHHh-cCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEE
Confidence            359999999999997765 34333  4444332      1232 567999999999998763       2        99


Q ss_pred             EEECCCh--hhHHHHHHHHHHHH
Q psy2967          78 MVDAADT--DKLEASRNELHALI   98 (101)
Q Consensus        78 v~d~~~~--~sf~~~~~~~~~i~   98 (101)
                      |||++++  ++++.+..|+.++.
T Consensus       102 v~d~~~~~~~~~~~~~~~l~~~~  124 (196)
T 3llu_A          102 VIDAQDDYMEALTRLHITVSKAY  124 (196)
T ss_dssp             EEETTSCCHHHHHHHHHHHHHHH
T ss_pred             EEECCCchHHHHHHHHHHHHHHH
Confidence            9999998  77888888888764

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.47  E-value=4.8e-14  Score=87.46  Aligned_cols=71  Identities=20%  Similarity=0.298  Sum_probs=55.3

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEE--EEEecCcEEEEEEeeCCCCccce------------EEEEECCC--
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM--RKITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD--   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~--   83 (101)
                      .+|++|||||||++++..+.+...+.+++..++  ..+...+..+.+||++|+++++.            ++|||+++  
T Consensus        13 v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~   92 (178)
T 2lkc_A           13 IMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGV   92 (178)
T ss_dssp             EESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCC
T ss_pred             EECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCC
Confidence            469999999999999999988877666655333  34556677889999999988765            89999998  


Q ss_pred             -hhhHHHH
Q psy2967          84 -TDKLEAS   90 (101)
Q Consensus        84 -~~sf~~~   90 (101)
                       +++++.+
T Consensus        93 ~~~~~~~l  100 (178)
T 2lkc_A           93 MPQTVEAI  100 (178)
T ss_dssp             CHHHHHHH
T ss_pred             cHHHHHHH
Confidence             4555444

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.43  E-value=5.8e-13  Score=82.35  Aligned_cols=76  Identities=17%  Similarity=0.166  Sum_probs=52.6

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccce--EEEEEecCcEEEEEEeeCCCCccc----------------e----EE
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGF--NMRKITKGNVTIKVWDIGGQPRFR----------------S----IY   77 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~i~D~~G~~~~~----------------~----i~   77 (101)
                      .+|++|||||||++++.+..+.....|+...  ....+...+..+.+|||+|+++++                .    ++
T Consensus         8 lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~   87 (165)
T 2wji_A            8 LIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVN   87 (165)
T ss_dssp             EECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEE
T ss_pred             EECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEE
Confidence            3699999999999999987765555554432  333455567899999999998763                1    88


Q ss_pred             EEECCChhhHHHHHHHHHHHH
Q psy2967          78 MVDAADTDKLEASRNELHALI   98 (101)
Q Consensus        78 v~d~~~~~sf~~~~~~~~~i~   98 (101)
                      |+|.++.++   ...|+.++.
T Consensus        88 v~D~~~~~~---~~~~~~~~~  105 (165)
T 2wji_A           88 IVDATALER---NLYLTLQLM  105 (165)
T ss_dssp             EEETTCHHH---HHHHHHHHH
T ss_pred             EecCCchhH---hHHHHHHHH
Confidence            999998654   345666654

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.40  E-value=2.8e-13  Score=84.58  Aligned_cols=79  Identities=15%  Similarity=0.226  Sum_probs=55.8

Q ss_pred             EeccCCCcceeeeeccccCcCC--CCCCCc-cceEEEEEecCcEEEEEEeeCCCCccc----------------e----E
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFS--QDMIPT-VGFNMRKITKGNVTIKVWDIGGQPRFR----------------S----I   76 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~--~~~~~t-~~~~~~~~~~~~~~~~i~D~~G~~~~~----------------~----i   76 (101)
                      .+|++|||||||++++....+.  ..+.+| .......+...+..+.+||++|++++.                .    +
T Consensus         9 ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i   88 (172)
T 2gj8_A            9 IAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVL   88 (172)
T ss_dssp             EEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEE
T ss_pred             EECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEE
Confidence            3599999999999999987642  233332 233334455566789999999986421                1    8


Q ss_pred             EEEECCChhhHHHHHHHHHHHHH
Q psy2967          77 YMVDAADTDKLEASRNELHALIE   99 (101)
Q Consensus        77 ~v~d~~~~~sf~~~~~~~~~i~~   99 (101)
                      +|||++++.+++. ..|+.++.+
T Consensus        89 ~v~D~~~~~s~~~-~~~~~~~~~  110 (172)
T 2gj8_A           89 FMVDGTTTDAVDP-AEIWPEFIA  110 (172)
T ss_dssp             EEEETTTCCCCSH-HHHCHHHHH
T ss_pred             EEEECCCCCCHHH-HHHHHHHHH
Confidence            8999999998874 467776654

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.39  E-value=5e-13  Score=83.70  Aligned_cols=77  Identities=21%  Similarity=0.193  Sum_probs=56.9

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceE--EEEEecCcEEEEEEeeCCCCccc-----------------e---EE
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFN--MRKITKGNVTIKVWDIGGQPRFR-----------------S---IY   77 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~D~~G~~~~~-----------------~---i~   77 (101)
                      .+|++|||||||++++.+..+.....|++..+  ...+..++..+.+||++|+++++                 .   ++
T Consensus        12 lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~   91 (188)
T 2wjg_A           12 LIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVN   91 (188)
T ss_dssp             EECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEE
T ss_pred             EECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEE
Confidence            36999999999999999876655555655443  34466678999999999998763                 1   77


Q ss_pred             EEECCChhhHHHHHHHHHHHHH
Q psy2967          78 MVDAADTDKLEASRNELHALIE   99 (101)
Q Consensus        78 v~d~~~~~sf~~~~~~~~~i~~   99 (101)
                      |+|.++   +++...|+.++.+
T Consensus        92 v~d~~~---~~~~~~~~~~~~~  110 (188)
T 2wjg_A           92 IVDATA---LERNLYLTLQLME  110 (188)
T ss_dssp             EEEGGG---HHHHHHHHHHHHT
T ss_pred             Eecchh---HHHHHHHHHHHHh
Confidence            888765   5666777776653

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.38  E-value=1.2e-13  Score=91.47  Aligned_cols=85  Identities=7%  Similarity=0.051  Sum_probs=57.6

Q ss_pred             ceeee-EeccC---------CCcceeeeecccc---CcCCCCCCCcc-ceEEE------------------EEecCcEEE
Q psy2967          15 PTVGF-NMRKI---------TKGNVTIWPVPLS---GQFSQDMIPTV-GFNMR------------------KITKGNVTI   62 (101)
Q Consensus        15 ~~~g~-~vG~~---------~vGKtsl~~~~~~---~~~~~~~~~t~-~~~~~------------------~~~~~~~~~   62 (101)
                      +.+.+ .+|++         |||||||+++|+.   +.+...+.||+ +.++.                  .+++..+.+
T Consensus        18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l   97 (255)
T 3c5h_A           18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKM   97 (255)
T ss_dssp             SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------CE
T ss_pred             ceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEEE
Confidence            33443 35999         9999999999998   66777777775 43321                  134567899


Q ss_pred             EEEe-----------------------eCCCCcc--------c---------------------e----EEEEECCCh--
Q psy2967          63 KVWD-----------------------IGGQPRF--------R---------------------S----IYMVDAADT--   84 (101)
Q Consensus        63 ~i~D-----------------------~~G~~~~--------~---------------------~----i~v~d~~~~--   84 (101)
                      ++||                       ++|++++        +                     .    |+|||++++  
T Consensus        98 ~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~  177 (255)
T 3c5h_A           98 HIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMN  177 (255)
T ss_dssp             EEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC---
T ss_pred             EEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCch
Confidence            9999                       5555422        1                     2    899999999  


Q ss_pred             hhHHHHHHHHHHHHH
Q psy2967          85 DKLEASRNELHALIE   99 (101)
Q Consensus        85 ~sf~~~~~~~~~i~~   99 (101)
                      +||+++..|+.++.+
T Consensus       178 ~s~~~~~~~l~~i~~  192 (255)
T 3c5h_A          178 RNFDDQLKFVSNLYN  192 (255)
T ss_dssp             -CHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHH
Confidence            999999999998865

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.38  E-value=5.8e-13  Score=86.35  Aligned_cols=80  Identities=10%  Similarity=0.131  Sum_probs=56.0

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCC--CccceEEEEEecCcEEEEEEeeCCC------Cc----cce-----------E
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMI--PTVGFNMRKITKGNVTIKVWDIGGQ------PR----FRS-----------I   76 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~i~D~~G~------~~----~~~-----------i   76 (101)
                      .+|++|||||||++++.++.+.....  .|..............+.+||++|+      ++    +..           |
T Consensus        34 vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i  113 (228)
T 2qu8_A           34 LSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVIL  113 (228)
T ss_dssp             EECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEE
T ss_pred             EECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEE
Confidence            46999999999999999887753222  2334444445667799999999999      43    211           8


Q ss_pred             EEEECCChhhHHH--HHHHHHHHHH
Q psy2967          77 YMVDAADTDKLEA--SRNELHALIE   99 (101)
Q Consensus        77 ~v~d~~~~~sf~~--~~~~~~~i~~   99 (101)
                      +|||++++.+|+.  ...|+..+.+
T Consensus       114 ~v~d~~~~~s~~~~~~~~~~~~l~~  138 (228)
T 2qu8_A          114 FIIDISEQCGLTIKEQINLFYSIKS  138 (228)
T ss_dssp             EEEETTCTTSSCHHHHHHHHHHHHT
T ss_pred             EEEecccccCcchHHHHHHHHHHHH
Confidence            8999999988753  3456666543

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.37  E-value=2.9e-13  Score=97.76  Aligned_cols=77  Identities=16%  Similarity=0.276  Sum_probs=52.5

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEEE------------ecCcEEEEEEeeCCCCccce------------
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKI------------TKGNVTIKVWDIGGQPRFRS------------   75 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~------------~~~~~~~~i~D~~G~~~~~~------------   75 (101)
                      .+|.+|||||||++++.++.+...+.||++.++...            .+..+.+.+||++|++.++.            
T Consensus        46 lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~i  125 (535)
T 3dpu_A           46 LIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVY  125 (535)
T ss_dssp             EESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHHHSSEEE
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHccCCcEE
Confidence            359999999999999999999888999999887632            23368999999999988776            


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHH
Q psy2967          76 IYMVDAADTDKLEASRNELHALIE   99 (101)
Q Consensus        76 i~v~d~~~~~sf~~~~~~~~~i~~   99 (101)
                      |+|||+++.   +.+..|+.++.+
T Consensus       126 i~V~D~s~~---~~~~~~~~~l~~  146 (535)
T 3dpu_A          126 MLLLDSRTD---SNKHYWLRHIEK  146 (535)
T ss_dssp             EEEECGGGG---GGHHHHHHHHHH
T ss_pred             EEEEeCCCc---hhHHHHHHHHHH
Confidence            889998765   455667777654

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.36  E-value=6.7e-14  Score=87.62  Aligned_cols=74  Identities=16%  Similarity=0.085  Sum_probs=56.9

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCC-----------CCccce-------------
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGG-----------QPRFRS-------------   75 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~-------------   75 (101)
                      .+|++|||||||++++.++.+...+.|++......+...  .+.+||++|           +++++.             
T Consensus         6 v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (190)
T 2cxx_A            6 FAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNI   83 (190)
T ss_dssp             EEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGC
T ss_pred             EECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccC
Confidence            369999999999999999988877777766544444333  688999999           444332             


Q ss_pred             EEEEECCChhhHHHH-HHHHH
Q psy2967          76 IYMVDAADTDKLEAS-RNELH   95 (101)
Q Consensus        76 i~v~d~~~~~sf~~~-~~~~~   95 (101)
                      ++||++.|..+|.++ ..|..
T Consensus        84 ~~v~~v~d~~s~~~~~~~~~~  104 (190)
T 2cxx_A           84 DVAVLVVDGKAAPEIIKRWEK  104 (190)
T ss_dssp             CEEEEEEETTHHHHHHHHHHH
T ss_pred             CEEEEEEcchhhhhHHHhhhc
Confidence            688999999999887 56754

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.29  E-value=1.8e-12  Score=86.16  Aligned_cols=75  Identities=17%  Similarity=0.202  Sum_probs=56.2

Q ss_pred             eccCCCcceeeeeccccCcCCCCCCCccceEE--EEEecCcEEEEEEeeCCCCccc------e-----------------
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM--RKITKGNVTIKVWDIGGQPRFR------S-----------------   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G~~~~~------~-----------------   75 (101)
                      +|.+|||||||++++.+..+.....|++..+.  ..+..++..+.+||++|+..+.      .                 
T Consensus         7 vG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~   86 (256)
T 3iby_A            7 IGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDC   86 (256)
T ss_dssp             EESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSE
T ss_pred             ECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCE
Confidence            69999999999999998765444445444333  3466677899999999997653      1                 


Q ss_pred             -EEEEECCChhhHHHHHHHHH
Q psy2967          76 -IYMVDAADTDKLEASRNELH   95 (101)
Q Consensus        76 -i~v~d~~~~~sf~~~~~~~~   95 (101)
                       |+|+|.++.+++..+..|+.
T Consensus        87 vi~VvDas~~~~~~~l~~~l~  107 (256)
T 3iby_A           87 IINVIDACHLERHLYLTSQLF  107 (256)
T ss_dssp             EEEEEEGGGHHHHHHHHHHHT
T ss_pred             EEEEeeCCCchhHHHHHHHHH
Confidence             88999999888777665553

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.28  E-value=1.2e-11  Score=84.09  Aligned_cols=78  Identities=15%  Similarity=0.043  Sum_probs=58.1

Q ss_pred             eccCCCcceeeeeccccCcCCC--CC-CCccceEEEEEecC-cEEEEEEeeCCCCccc----------e-----------
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQ--DM-IPTVGFNMRKITKG-NVTIKVWDIGGQPRFR----------S-----------   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~--~~-~~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~----------~-----------   75 (101)
                      +|.+|||||||++++++.++..  .. ..|........... +..+.+|||+|+....          .           
T Consensus        16 vG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~   95 (308)
T 3iev_A           16 VGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADV   95 (308)
T ss_dssp             ECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSE
T ss_pred             ECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCE
Confidence            5999999999999999887642  22 22333333334555 8999999999996654          1           


Q ss_pred             -EEEEECCChhhHHHHHHHHHHHH
Q psy2967          76 -IYMVDAADTDKLEASRNELHALI   98 (101)
Q Consensus        76 -i~v~d~~~~~sf~~~~~~~~~i~   98 (101)
                       ++|+|.++..++++...|+..+.
T Consensus        96 il~VvD~~~~~~~~~~~~~~~~l~  119 (308)
T 3iev_A           96 ILFMIDATEGWRPRDEEIYQNFIK  119 (308)
T ss_dssp             EEEEEETTTBSCHHHHHHHHHHTG
T ss_pred             EEEEEeCCCCCCchhHHHHHHHHH
Confidence             89999999999988877776654

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.27  E-value=2.5e-12  Score=78.37  Aligned_cols=68  Identities=13%  Similarity=0.118  Sum_probs=46.4

Q ss_pred             EeccCCCcceeeeeccccCcCC--CCCCC-ccceEEEEEecCcEEEEEEeeCCCCcc-------ce------------EE
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFS--QDMIP-TVGFNMRKITKGNVTIKVWDIGGQPRF-------RS------------IY   77 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~--~~~~~-t~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~------------i~   77 (101)
                      .+|++|||||||++++.++.+.  ..+.+ |.......+...+..+.+||++|++.+       ..            ++
T Consensus         6 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~   85 (161)
T 2dyk_A            6 IVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLF   85 (161)
T ss_dssp             EECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEE
T ss_pred             EECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEE
Confidence            3699999999999999987643  22222 223333446666779999999999862       11            88


Q ss_pred             EEECCChhhH
Q psy2967          78 MVDAADTDKL   87 (101)
Q Consensus        78 v~d~~~~~sf   87 (101)
                      |||.+++.+.
T Consensus        86 v~d~~~~~~~   95 (161)
T 2dyk_A           86 AVDGRAELTQ   95 (161)
T ss_dssp             EEESSSCCCH
T ss_pred             EEECCCcccH
Confidence            9999986554

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.24  E-value=9.5e-12  Score=82.68  Aligned_cols=76  Identities=14%  Similarity=0.124  Sum_probs=54.6

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEE--EEEecCcEEEEEEeeCCCCccce--------------------EE
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM--RKITKGNVTIKVWDIGGQPRFRS--------------------IY   77 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G~~~~~~--------------------i~   77 (101)
                      .+|++|||||||++++.+..+.....|.+....  ..+..++..+.+||++|+..+..                    ++
T Consensus        10 lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~   89 (258)
T 3a1s_A           10 LAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVIL   89 (258)
T ss_dssp             EECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEE
T ss_pred             EECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEE
Confidence            359999999999999998765433344333333  34666789999999999876531                    88


Q ss_pred             EEECCChhhHHHHHHHHHHHH
Q psy2967          78 MVDAADTDKLEASRNELHALI   98 (101)
Q Consensus        78 v~d~~~~~sf~~~~~~~~~i~   98 (101)
                      |+|.++.++..   .|..++.
T Consensus        90 V~D~t~~~~~~---~~~~~l~  107 (258)
T 3a1s_A           90 VADSVNPEQSL---YLLLEIL  107 (258)
T ss_dssp             EEETTSCHHHH---HHHHHHH
T ss_pred             EeCCCchhhHH---HHHHHHH
Confidence            99999976644   3555544

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.24  E-value=7.3e-12  Score=81.79  Aligned_cols=51  Identities=16%  Similarity=0.035  Sum_probs=37.6

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCC----ccceEEEEEecCcEEEEEEeeCCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIP----TVGFNMRKITKGNVTIKVWDIGGQ   70 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~D~~G~   70 (101)
                      .+|.+|||||||++++.+..+.....+    |.......+...+..+.+|||+|.
T Consensus        34 lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~   88 (239)
T 3lxx_A           34 LVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGI   88 (239)
T ss_dssp             EECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSC
T ss_pred             EECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCc
Confidence            369999999999999998877655444    333444456677889999999994

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.23  E-value=9.1e-12  Score=83.33  Aligned_cols=76  Identities=13%  Similarity=0.152  Sum_probs=55.6

Q ss_pred             eccCCCcceeeeeccccCcCCCCCCCccceEE--EEEecCcEEEEEEeeCCCCccc--------------------e---
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM--RKITKGNVTIKVWDIGGQPRFR--------------------S---   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G~~~~~--------------------~---   75 (101)
                      +|.+|||||||++++.+..+.....|++..+.  ..+...+..+.+||++|+..+.                    .   
T Consensus         9 vG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~   88 (274)
T 3i8s_A            9 IGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADL   88 (274)
T ss_dssp             EECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSE
T ss_pred             ECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCE
Confidence            59999999999999998765444444444333  3466667789999999987755                    1   


Q ss_pred             -EEEEECCChhhHHHHHHHHHH
Q psy2967          76 -IYMVDAADTDKLEASRNELHA   96 (101)
Q Consensus        76 -i~v~d~~~~~sf~~~~~~~~~   96 (101)
                       ++|+|.++.++...+..|+.+
T Consensus        89 ii~VvD~~~~~~~~~~~~~l~~  110 (274)
T 3i8s_A           89 LINVVDASNLERNLYLTLQLLE  110 (274)
T ss_dssp             EEEEEEGGGHHHHHHHHHHHHH
T ss_pred             EEEEecCCChHHHHHHHHHHHh
Confidence             889999998776665555543

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.22  E-value=1.5e-12  Score=81.87  Aligned_cols=70  Identities=10%  Similarity=0.073  Sum_probs=42.8

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEE--EEecCcEEEEEEeeCC----------CCccce------------
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KITKGNVTIKVWDIGG----------QPRFRS------------   75 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~D~~G----------~~~~~~------------   75 (101)
                      .+|++|||||||++++.++.+...+.++.+....  .... +..+.+||++|          ++.++.            
T Consensus        28 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (195)
T 1svi_A           28 LAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREEL  106 (195)
T ss_dssp             EEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTE
T ss_pred             EECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-CCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcC
Confidence            4699999999999999998876666666653321  1221 22689999999          444332            


Q ss_pred             ---EEEEECCChhhHHHH
Q psy2967          76 ---IYMVDAADTDKLEAS   90 (101)
Q Consensus        76 ---i~v~d~~~~~sf~~~   90 (101)
                         ++|+|++++.++.+.
T Consensus       107 ~~~i~v~d~~~~~~~~~~  124 (195)
T 1svi_A          107 KAVVQIVDLRHAPSNDDV  124 (195)
T ss_dssp             EEEEEEEETTSCCCHHHH
T ss_pred             CEEEEEEECCCCCCHHHH
Confidence               889999998887765

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.20  E-value=1.7e-11  Score=81.67  Aligned_cols=66  Identities=15%  Similarity=0.129  Sum_probs=50.7

Q ss_pred             eccCCCcceeeeeccccCcCCCCCCCccceEEE--EEecCcEEEEEEeeCCCCccce--------------------EEE
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KITKGNVTIKVWDIGGQPRFRS--------------------IYM   78 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~D~~G~~~~~~--------------------i~v   78 (101)
                      +|++|||||||++++.+..+.....|++..+..  .+..++..+.+||++|+..+..                    ++|
T Consensus         9 vG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v   88 (271)
T 3k53_A            9 VGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDI   88 (271)
T ss_dssp             EECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEE
Confidence            599999999999999987765455565555543  4666778899999999876532                    889


Q ss_pred             EECCChhh
Q psy2967          79 VDAADTDK   86 (101)
Q Consensus        79 ~d~~~~~s   86 (101)
                      +|.++.++
T Consensus        89 ~D~~~~~~   96 (271)
T 3k53_A           89 VDSTCLMR   96 (271)
T ss_dssp             EEGGGHHH
T ss_pred             ecCCcchh
Confidence            99988643

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.19  E-value=4.4e-11  Score=79.36  Aligned_cols=80  Identities=15%  Similarity=0.108  Sum_probs=54.9

Q ss_pred             eEeccCCCcceeeeeccccCcC--CCCCCC-ccceEEEEEecCcEEEEEEeeCCCCccce--------------------
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQF--SQDMIP-TVGFNMRKITKGNVTIKVWDIGGQPRFRS--------------------   75 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~--~~~~~~-t~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------------------   75 (101)
                      ..+|..|+|||||++++.+.++  ...+.+ |.......+...+..+.+|||+|++.+..                    
T Consensus        40 ~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~  119 (262)
T 3def_A           40 LVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDV  119 (262)
T ss_dssp             EEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECE
T ss_pred             EEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCE
Confidence            3469999999999999998774  323333 33444445677888999999999976532                    


Q ss_pred             -EEEEECCChhhHHHH-HHHHHHHHH
Q psy2967          76 -IYMVDAADTDKLEAS-RNELHALIE   99 (101)
Q Consensus        76 -i~v~d~~~~~sf~~~-~~~~~~i~~   99 (101)
                       ++|+|+++.. +.+. ..|+..+.+
T Consensus       120 il~V~~~d~~~-~~~~~~~~~~~l~~  144 (262)
T 3def_A          120 LLYVDRLDVYA-VDELDKQVVIAITQ  144 (262)
T ss_dssp             EEEEEESSCSC-CCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCC-CCHHHHHHHHHHHH
Confidence             8888887654 4433 356555543

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.18  E-value=2.3e-11  Score=81.48  Aligned_cols=74  Identities=16%  Similarity=0.218  Sum_probs=50.8

Q ss_pred             eccCCCcceeeeeccccCcCCCCCCCccce--EEEEEecCcEEEEEEeeCCCCccce--------------------EEE
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGF--NMRKITKGNVTIKVWDIGGQPRFRS--------------------IYM   78 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~i~D~~G~~~~~~--------------------i~v   78 (101)
                      +|++|||||||++++.+........|...+  ....+.. +..+.+||++|+.++..                    ++|
T Consensus         9 vG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V   87 (272)
T 3b1v_A            9 IGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNV   87 (272)
T ss_dssp             ECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEE
T ss_pred             ECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEE
Confidence            699999999999999986533222232222  2233445 77899999999987641                    889


Q ss_pred             EECCChhhHHHHHHHHHHHH
Q psy2967          79 VDAADTDKLEASRNELHALI   98 (101)
Q Consensus        79 ~d~~~~~sf~~~~~~~~~i~   98 (101)
                      +|.++.+++.   .|..++.
T Consensus        88 ~D~t~~e~~~---~~~~~l~  104 (272)
T 3b1v_A           88 VDATNLERNL---YLTTQLI  104 (272)
T ss_dssp             EEGGGHHHHH---HHHHHHH
T ss_pred             ecCCchHhHH---HHHHHHH
Confidence            9999876654   4555443

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.17  E-value=6e-11  Score=80.49  Aligned_cols=74  Identities=19%  Similarity=0.170  Sum_probs=51.5

Q ss_pred             eccCCCcceeeeeccccCcCCC--CCCCccceEEE-EEecCcEEEEEEeeCCCCccc--------e------------EE
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQ--DMIPTVGFNMR-KITKGNVTIKVWDIGGQPRFR--------S------------IY   77 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~--~~~~t~~~~~~-~~~~~~~~~~i~D~~G~~~~~--------~------------i~   77 (101)
                      +|.+|||||||++++++.++..  ....|...... .+..++..+.+|||+|+.+.+        .            ++
T Consensus        13 vG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~   92 (301)
T 1wf3_A           13 VGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVW   92 (301)
T ss_dssp             ECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEE
T ss_pred             ECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEE
Confidence            5999999999999999887642  22223332222 345678999999999987631        1            89


Q ss_pred             EEECCChhhHHHHHHHHHH
Q psy2967          78 MVDAADTDKLEASRNELHA   96 (101)
Q Consensus        78 v~d~~~~~sf~~~~~~~~~   96 (101)
                      |+|.+++.+..  ..|+.+
T Consensus        93 VvD~~~~~~~~--~~~i~~  109 (301)
T 1wf3_A           93 VVDLRHPPTPE--DELVAR  109 (301)
T ss_dssp             EEETTSCCCHH--HHHHHH
T ss_pred             EEECCCCCChH--HHHHHH
Confidence            99999876544  345533

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.17  E-value=1.2e-11  Score=85.41  Aligned_cols=79  Identities=16%  Similarity=0.135  Sum_probs=57.8

Q ss_pred             eccCCCcceeeeeccccCcCC-CCC-CCccceEEEEEecCc-EEEEEEeeCCCCc----cce---------------EEE
Q psy2967          21 MRKITKGNVTIWPVPLSGQFS-QDM-IPTVGFNMRKITKGN-VTIKVWDIGGQPR----FRS---------------IYM   78 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~-~~~-~~t~~~~~~~~~~~~-~~~~i~D~~G~~~----~~~---------------i~v   78 (101)
                      +|.++||||||++++....+. .++ ..|...+...+...+ ..+.+||++|...    ++.               |+|
T Consensus       164 vG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~V  243 (342)
T 1lnz_A          164 VGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHV  243 (342)
T ss_dssp             ESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEE
T ss_pred             eCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEE
Confidence            699999999999999976532 222 245555554455443 7899999999532    111               889


Q ss_pred             EECCC---hhhHHHHHHHHHHHHH
Q psy2967          79 VDAAD---TDKLEASRNELHALIE   99 (101)
Q Consensus        79 ~d~~~---~~sf~~~~~~~~~i~~   99 (101)
                      +|+++   +.+++++..|+.++..
T Consensus       244 vD~s~~~~~~~~~~~~~~~~eL~~  267 (342)
T 1lnz_A          244 IDMSGLEGRDPYDDYLTINQELSE  267 (342)
T ss_dssp             EESSCSSCCCHHHHHHHHHHHHHH
T ss_pred             EECCcccccChHHHHHHHHHHHHH
Confidence            99999   8899999989888764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.15  E-value=4.9e-11  Score=84.38  Aligned_cols=68  Identities=16%  Similarity=0.086  Sum_probs=44.1

Q ss_pred             eccCCCcceeeeeccccCcCC--CCCCC-ccceEEEEEecCcEEEEEEeeCCCCccc---------e------------E
Q psy2967          21 MRKITKGNVTIWPVPLSGQFS--QDMIP-TVGFNMRKITKGNVTIKVWDIGGQPRFR---------S------------I   76 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~--~~~~~-t~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~------------i   76 (101)
                      +|.+|||||||+++++++...  ..+.. |....+..+...+..+.+|||+|++...         .            +
T Consensus         7 vG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il   86 (439)
T 1mky_A            7 VGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVL   86 (439)
T ss_dssp             ECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEE
Confidence            699999999999999987642  22221 1223334566677889999999987421         1            8


Q ss_pred             EEEECCChhhHH
Q psy2967          77 YMVDAADTDKLE   88 (101)
Q Consensus        77 ~v~d~~~~~sf~   88 (101)
                      +|+|.++..+..
T Consensus        87 ~V~D~~~~~~~~   98 (439)
T 1mky_A           87 FVVDGKRGITKE   98 (439)
T ss_dssp             EEEETTTCCCHH
T ss_pred             EEEECCCCCCHH
Confidence            999998866543

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.14  E-value=1.7e-10  Score=79.62  Aligned_cols=80  Identities=16%  Similarity=0.183  Sum_probs=60.7

Q ss_pred             EeccCCCcceeeeeccccCcCCCC--CCCccceEEEEEecCcEEEEEEeeCCCCccc------------------e---E
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQD--MIPTVGFNMRKITKGNVTIKVWDIGGQPRFR------------------S---I   76 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~------------------~---i   76 (101)
                      .+|.+|||||||++++.+..+...  ...|.......+...+..+.+|||+|.....                  .   +
T Consensus       172 lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~il  251 (357)
T 2e87_A          172 IAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLII  251 (357)
T ss_dssp             EECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEE
T ss_pred             EECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEE
Confidence            469999999999999998764321  2345556555666678899999999984321                  1   8


Q ss_pred             EEEECCChh--hHHHHHHHHHHHHH
Q psy2967          77 YMVDAADTD--KLEASRNELHALIE   99 (101)
Q Consensus        77 ~v~d~~~~~--sf~~~~~~~~~i~~   99 (101)
                      +|+|+++..  ++++...|+.++.+
T Consensus       252 lV~D~s~~~~~~~~~~~~~~~~i~~  276 (357)
T 2e87_A          252 YIFDPSEHCGFPLEEQIHLFEEVHG  276 (357)
T ss_dssp             EEECTTCTTSSCHHHHHHHHHHHHH
T ss_pred             EEEeCCccccCCHHHHHHHHHHHHH
Confidence            899999887  78888889888765

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.14  E-value=1.6e-11  Score=76.86  Aligned_cols=76  Identities=11%  Similarity=0.049  Sum_probs=48.8

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE-EecCcEEEEEEeeCC----------CCccce-------------
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK-ITKGNVTIKVWDIGG----------QPRFRS-------------   75 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~i~D~~G----------~~~~~~-------------   75 (101)
                      .+|++|||||||++++.++.+. .+.++.+..... ....+..+.+||++|          ++.++.             
T Consensus        28 v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (195)
T 3pqc_A           28 FVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQ  106 (195)
T ss_dssp             EEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEE
T ss_pred             EECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCce
Confidence            4699999999999999988743 455555533211 111233577999999          433332             


Q ss_pred             --EEEEECCChhh--HHHHHHHHHH
Q psy2967          76 --IYMVDAADTDK--LEASRNELHA   96 (101)
Q Consensus        76 --i~v~d~~~~~s--f~~~~~~~~~   96 (101)
                        ++|+|.++..+  ...+..|+.+
T Consensus       107 ~vi~v~d~~~~~~~~~~~~~~~~~~  131 (195)
T 3pqc_A          107 MVFLLVDGRIPPQDSDLMMVEWMKS  131 (195)
T ss_dssp             EEEEEEETTSCCCHHHHHHHHHHHH
T ss_pred             EEEEEecCCCCCCHHHHHHHHHHHH
Confidence              78899887644  3444455543

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.12  E-value=2.1e-10  Score=76.29  Aligned_cols=79  Identities=11%  Similarity=0.072  Sum_probs=52.9

Q ss_pred             eEeccCCCcceeeeeccccCcCC--CCCCCcc-ceEEEEEecCcEEEEEEeeCCCCccc-----------------e---
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFS--QDMIPTV-GFNMRKITKGNVTIKVWDIGGQPRFR-----------------S---   75 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~--~~~~~t~-~~~~~~~~~~~~~~~i~D~~G~~~~~-----------------~---   75 (101)
                      +.+|.+|+|||||++++.+..+.  ..+.++. ......+...+..+.+|||+|+..+.                 .   
T Consensus        43 ~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~  122 (270)
T 1h65_A           43 LVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDV  122 (270)
T ss_dssp             EEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECE
T ss_pred             EEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCE
Confidence            34699999999999999987753  2222222 22223456778999999999986542                 1   


Q ss_pred             -EEEEECCChhhHHHH-HHHHHHHH
Q psy2967          76 -IYMVDAADTDKLEAS-RNELHALI   98 (101)
Q Consensus        76 -i~v~d~~~~~sf~~~-~~~~~~i~   98 (101)
                       ++|+|++.. ++... ..|+..+.
T Consensus       123 il~v~~~d~~-~~~~~~~~~~~~l~  146 (270)
T 1h65_A          123 LLYVDRLDAY-RVDNLDKLVAKAIT  146 (270)
T ss_dssp             EEEEEESSCC-CCCHHHHHHHHHHH
T ss_pred             EEEEEeCCCC-cCCHHHHHHHHHHH
Confidence             889888653 34433 35666554

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.11  E-value=4e-11  Score=85.91  Aligned_cols=70  Identities=14%  Similarity=0.149  Sum_probs=39.5

Q ss_pred             EeccCCCcceeeeeccccCcC--CCCCCCcc-ceEEEEEecCcEEEEEEeeCCCCccce--------------------E
Q psy2967          20 NMRKITKGNVTIWPVPLSGQF--SQDMIPTV-GFNMRKITKGNVTIKVWDIGGQPRFRS--------------------I   76 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~--~~~~~~t~-~~~~~~~~~~~~~~~i~D~~G~~~~~~--------------------i   76 (101)
                      .+|.+|||||||++++.+.+.  ...+..|. ......+..++..+.+|||+|+..++.                    +
T Consensus       238 ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl  317 (476)
T 3gee_A          238 IAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLIL  317 (476)
T ss_dssp             EECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCCSSCSEEE
T ss_pred             EECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEE
Confidence            359999999999999998753  33333332 222244667789999999999865431                    8


Q ss_pred             EEEECCChhhHHH
Q psy2967          77 YMVDAADTDKLEA   89 (101)
Q Consensus        77 ~v~d~~~~~sf~~   89 (101)
                      +|+|.+++.++++
T Consensus       318 ~VvD~s~~~s~~~  330 (476)
T 3gee_A          318 YLLDLGTERLDDE  330 (476)
T ss_dssp             EEEETTTCSSGGG
T ss_pred             EEEECCCCcchhh
Confidence            9999999988864

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.11  E-value=8.2e-12  Score=88.35  Aligned_cols=77  Identities=16%  Similarity=0.169  Sum_probs=53.4

Q ss_pred             eccCCCcceeeeeccccC--cCCCC-------------------------------CCCccceEEEEEecCcEEEEEEee
Q psy2967          21 MRKITKGNVTIWPVPLSG--QFSQD-------------------------------MIPTVGFNMRKITKGNVTIKVWDI   67 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~--~~~~~-------------------------------~~~t~~~~~~~~~~~~~~~~i~D~   67 (101)
                      +|..++|||||++++...  .+.+.                               ...|+...+..+...+..+.+||+
T Consensus        12 iG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~~~iiDt   91 (435)
T 1jny_A           12 IGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFFTIIDA   91 (435)
T ss_dssp             EESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCEEEECCC
T ss_pred             EeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeEEEEEEC
Confidence            599999999999999863  33211                               123444444557778899999999


Q ss_pred             CCCCccce------------EEEEECCChhhHHHHHHHHHHHH
Q psy2967          68 GGQPRFRS------------IYMVDAADTDKLEASRNELHALI   98 (101)
Q Consensus        68 ~G~~~~~~------------i~v~d~~~~~sf~~~~~~~~~i~   98 (101)
                      +|+++|..            |+|+|.++ .+|+++..|..+..
T Consensus        92 pG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~  133 (435)
T 1jny_A           92 PGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTR  133 (435)
T ss_dssp             SSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHH
T ss_pred             CCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHH
Confidence            99998865            99999999 78887765544443

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.10  E-value=1e-10  Score=80.72  Aligned_cols=66  Identities=18%  Similarity=0.304  Sum_probs=55.9

Q ss_pred             ccccCcCCCC-------CCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECC----------Ch
Q psy2967          34 VPLSGQFSQD-------MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAA----------DT   84 (101)
Q Consensus        34 ~~~~~~~~~~-------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~----------~~   84 (101)
                      |+....+.+.       +.||+|+....+..+++.+++||++||++++.            |||||++          +.
T Consensus       128 Ri~~~~Y~PT~~Dil~~~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~  207 (340)
T 4fid_A          128 RIAMEDYVPTEEDLIHNRTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNT  207 (340)
T ss_dssp             HHSSTTCCCCHHHHHHSCCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCS
T ss_pred             HHhcccCCccccceeecccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCcccccccccccc
Confidence            4444555554       67889998888888999999999999998877            9999999          78


Q ss_pred             hhHHHHHHHHHHHHH
Q psy2967          85 DKLEASRNELHALIE   99 (101)
Q Consensus        85 ~sf~~~~~~~~~i~~   99 (101)
                      ++|+++..|+.++++
T Consensus       208 nr~~es~~~~~~i~~  222 (340)
T 4fid_A          208 SRLTESIAVFKDIMT  222 (340)
T ss_dssp             BHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhh
Confidence            999999999998875

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.08  E-value=2.1e-11  Score=86.21  Aligned_cols=78  Identities=9%  Similarity=0.030  Sum_probs=53.2

Q ss_pred             EeccCCCcceeeeeccccCcCC--CCCCCccc-eEEEEEecCcEEEEEEeeCCC----------Cccce-----------
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFS--QDMIPTVG-FNMRKITKGNVTIKVWDIGGQ----------PRFRS-----------   75 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~--~~~~~t~~-~~~~~~~~~~~~~~i~D~~G~----------~~~~~-----------   75 (101)
                      .+|.+|||||||++++.+.++.  ..+..|.. .....+...+..+.+|||+|+          ++|..           
T Consensus       180 lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad  259 (436)
T 2hjg_A          180 LIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSE  259 (436)
T ss_dssp             EECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCS
T ss_pred             EEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCC
Confidence            4699999999999999987753  22332222 222345566778999999998          44322           


Q ss_pred             --EEEEECCChhhHHHHHHHHHHHH
Q psy2967          76 --IYMVDAADTDKLEASRNELHALI   98 (101)
Q Consensus        76 --i~v~d~~~~~sf~~~~~~~~~i~   98 (101)
                        ++|+|+++..++++. .|+..+.
T Consensus       260 ~~llv~D~~~~~s~~~~-~~~~~~~  283 (436)
T 2hjg_A          260 VVAVVLDGEEGIIEQDK-RIAGYAH  283 (436)
T ss_dssp             EEEEEEETTTCCCHHHH-HHHHHHH
T ss_pred             EEEEEEcCCcCCcHHHH-HHHHHHH
Confidence              889999999998876 4666554

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.08  E-value=4.2e-10  Score=74.14  Aligned_cols=78  Identities=13%  Similarity=0.120  Sum_probs=52.9

Q ss_pred             EeccCCCcceeeeeccccCc-CCCCCCC---ccceEEEEEecCcEEEEEEeeCCCCccc-------------------e-
Q psy2967          20 NMRKITKGNVTIWPVPLSGQ-FSQDMIP---TVGFNMRKITKGNVTIKVWDIGGQPRFR-------------------S-   75 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~-~~~~~~~---t~~~~~~~~~~~~~~~~i~D~~G~~~~~-------------------~-   75 (101)
                      .+|.+|||||||++++.+.. +...+.|   |.......+...+..+.+|||+|+..+.                   . 
T Consensus        27 lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~  106 (260)
T 2xtp_A           27 LVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGP  106 (260)
T ss_dssp             EEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCC
T ss_pred             EECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCC
Confidence            36999999999999999876 5544444   3334444566778899999999975431                   1 


Q ss_pred             ---EEEEECCChhhH-HHHHHHHHHH
Q psy2967          76 ---IYMVDAADTDKL-EASRNELHAL   97 (101)
Q Consensus        76 ---i~v~d~~~~~sf-~~~~~~~~~i   97 (101)
                         |+|+|+++.... ..+..|+.++
T Consensus       107 d~il~V~d~~~~~~~~~~~~~~l~~~  132 (260)
T 2xtp_A          107 HVLLLVTQLGRYTSQDQQAAQRVKEI  132 (260)
T ss_dssp             SEEEEEEETTCCCHHHHHHHHHHHHH
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHHH
Confidence               899999863322 2334455443

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.05  E-value=1e-10  Score=75.04  Aligned_cols=51  Identities=14%  Similarity=0.011  Sum_probs=36.1

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCC----CccceEEEEEe-cCcEEEEEEeeCCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMI----PTVGFNMRKIT-KGNVTIKVWDIGGQ   70 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~----~t~~~~~~~~~-~~~~~~~i~D~~G~   70 (101)
                      .+|.+|||||||++++.++.+.....    .|....+..+. ..+..+.+|||+|.
T Consensus        34 v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~   89 (223)
T 4dhe_A           34 FAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGY   89 (223)
T ss_dssp             EEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCC
T ss_pred             EEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCC
Confidence            36999999999999999886322222    23334444454 56788999999995

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.03  E-value=2.6e-10  Score=79.26  Aligned_cols=80  Identities=18%  Similarity=0.231  Sum_probs=50.6

Q ss_pred             cceeeeEeccCCCcceeeeeccccCcCCC--CCCCccceEEEEEecCcEEEEEEeeCCCC---------ccce-------
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLSGQFSQ--DMIPTVGFNMRKITKGNVTIKVWDIGGQP---------RFRS-------   75 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~-------   75 (101)
                      ++.+. .+|.+|||||||++++.+..+..  ...+|.......+...+..+.+|||+|.-         .++.       
T Consensus       179 ~~~V~-lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~  257 (364)
T 2qtf_A          179 IPSIG-IVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKY  257 (364)
T ss_dssp             CCEEE-EECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGG
T ss_pred             CcEEE-EECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHh
Confidence            44444 36999999999999999876532  23455555555566566889999999972         1221       


Q ss_pred             ----EEEEECCChh--hHHHHHHHH
Q psy2967          76 ----IYMVDAADTD--KLEASRNEL   94 (101)
Q Consensus        76 ----i~v~d~~~~~--sf~~~~~~~   94 (101)
                          ++|+|.+++.  +.+....|.
T Consensus       258 aD~il~VvD~s~~~~~~~~~~~~~~  282 (364)
T 2qtf_A          258 SDALILVIDSTFSENLLIETLQSSF  282 (364)
T ss_dssp             SSEEEEEEETTSCHHHHHHHHHHHH
T ss_pred             CCEEEEEEECCCCcchHHHHHHHHH
Confidence                8899999876  555554443

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.00  E-value=7.3e-11  Score=83.42  Aligned_cols=76  Identities=20%  Similarity=0.254  Sum_probs=45.8

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceE----EEEEecCcEEEEEEeeCCCC--------ccce------------
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFN----MRKITKGNVTIKVWDIGGQP--------RFRS------------   75 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~----~~~~~~~~~~~~i~D~~G~~--------~~~~------------   75 (101)
                      .+|.+|||||||++++.+..+. ...++.|..    +..+...+..+.+|||+|++        +++.            
T Consensus         8 ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~i   86 (436)
T 2hjg_A            8 IVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVI   86 (436)
T ss_dssp             EECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEE
T ss_pred             EECCCCCCHHHHHHHHhCCCce-eecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEE
Confidence            3699999999999999987654 334444433    33456677889999999986        3322            


Q ss_pred             EEEEECCChhhHHHHHHHHHHHH
Q psy2967          76 IYMVDAADTDKLEASRNELHALI   98 (101)
Q Consensus        76 i~v~d~~~~~sf~~~~~~~~~i~   98 (101)
                      |+|+|.++..++..  .|+.+++
T Consensus        87 l~vvD~~~~~~~~d--~~~~~~l  107 (436)
T 2hjg_A           87 IFMVNGREGVTAAD--EEVAKIL  107 (436)
T ss_dssp             EEEEETTTCSCHHH--HHHHHHH
T ss_pred             EEEEeCCCCCCHHH--HHHHHHH
Confidence            88999998777554  3454444

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=98.99  E-value=1.2e-09  Score=76.94  Aligned_cols=54  Identities=26%  Similarity=0.457  Sum_probs=47.4

Q ss_pred             CccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCC----------hhhHHHHHHHHHHHHH
Q psy2967          46 PTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD----------TDKLEASRNELHALIE   99 (101)
Q Consensus        46 ~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~----------~~sf~~~~~~~~~i~~   99 (101)
                      +|+|++...+..+++.+++||++||++++.            |||||+++          +++|+++..|+.++.+
T Consensus       203 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~  278 (402)
T 1azs_C          203 LTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWN  278 (402)
T ss_dssp             CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHT
T ss_pred             ceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHh
Confidence            466777766777789999999999999887            99999999          8999999999999875

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=98.97  E-value=2.8e-10  Score=79.18  Aligned_cols=77  Identities=17%  Similarity=0.111  Sum_probs=48.2

Q ss_pred             eccCCCcceeeeeccccCcCCC-CC-CCccceEEEEEecC-----------------cEEEEEEeeCCCCccce------
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQ-DM-IPTVGFNMRKITKG-----------------NVTIKVWDIGGQPRFRS------   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~-~~-~~t~~~~~~~~~~~-----------------~~~~~i~D~~G~~~~~~------   75 (101)
                      +|.+|||||||++++.+..+.. ++ .+|++.+...+...                 ...+.+||++|+.++..      
T Consensus         8 VG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl~   87 (363)
T 1jal_A            8 VGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGLG   87 (363)
T ss_dssp             ECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGGT
T ss_pred             ECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccccchHH
Confidence            6899999999999999876422 22 12444332222222                 26899999999876421      


Q ss_pred             -------------EEEEECCCh----------hhHHHHHHHHHHH
Q psy2967          76 -------------IYMVDAADT----------DKLEASRNELHAL   97 (101)
Q Consensus        76 -------------i~v~d~~~~----------~sf~~~~~~~~~i   97 (101)
                                   ++|+|+++.          +.+..+..+..|+
T Consensus        88 ~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL  132 (363)
T 1jal_A           88 NKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTEL  132 (363)
T ss_dssp             CCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHH
Confidence                         889999863          4555555544444

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=98.97  E-value=9.9e-10  Score=75.45  Aligned_cols=56  Identities=23%  Similarity=0.465  Sum_probs=48.9

Q ss_pred             CCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECC----------ChhhHHHHHHHHHHHHH
Q psy2967          44 MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAA----------DTDKLEASRNELHALIE   99 (101)
Q Consensus        44 ~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~----------~~~sf~~~~~~~~~i~~   99 (101)
                      ..||+|+....+..+++.+++||++||++++.            |||||++          +.++|+++..|+.++.+
T Consensus       151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~  228 (327)
T 3ohm_A          151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIIT  228 (327)
T ss_dssp             CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHT
T ss_pred             cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhh
Confidence            67889988888888999999999999998877            9999554          78899999999998875

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=98.97  E-value=2.6e-10  Score=81.81  Aligned_cols=71  Identities=17%  Similarity=0.185  Sum_probs=52.7

Q ss_pred             EeccCCCcceeeeeccccCcC--CCCCCCcc-ceEEEEEecCcEEEEEEeeCCCC-ccce--------------------
Q psy2967          20 NMRKITKGNVTIWPVPLSGQF--SQDMIPTV-GFNMRKITKGNVTIKVWDIGGQP-RFRS--------------------   75 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~--~~~~~~t~-~~~~~~~~~~~~~~~i~D~~G~~-~~~~--------------------   75 (101)
                      .+|.+|||||||++++.+.++  ...+..|. ......+..++..+.+|||+|.. .+..                    
T Consensus       248 ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~v  327 (482)
T 1xzp_A          248 IVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIV  327 (482)
T ss_dssp             EECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEE
T ss_pred             EECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEE
Confidence            369999999999999998753  33444333 33334566678899999999987 4321                    


Q ss_pred             EEEEECCChhhHHHH
Q psy2967          76 IYMVDAADTDKLEAS   90 (101)
Q Consensus        76 i~v~d~~~~~sf~~~   90 (101)
                      |+|+|.+++.+++..
T Consensus       328 l~VvD~s~~~s~~~~  342 (482)
T 1xzp_A          328 LFVLDASSPLDEEDR  342 (482)
T ss_dssp             EEEEETTSCCCHHHH
T ss_pred             EEEecCCCCCCHHHH
Confidence            899999999888764

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=98.96  E-value=4.4e-10  Score=82.40  Aligned_cols=77  Identities=17%  Similarity=0.243  Sum_probs=55.2

Q ss_pred             cceeeeEeccCCCcceeeeeccccCcCCC----CCCCccceEEEEEe----------------cCcEEEEEEeeCCCCcc
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLSGQFSQ----DMIPTVGFNMRKIT----------------KGNVTIKVWDIGGQPRF   73 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~~~----~~~~t~~~~~~~~~----------------~~~~~~~i~D~~G~~~~   73 (101)
                      .|.+. .+|.+++|||||++++.+..+..    ...++++..+....                .....+.+|||+|++.|
T Consensus         5 ~~~V~-IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            5 SPIVS-VLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCEEE-EECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CcEEE-EECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            34444 36999999999999998765542    23456676654321                11236999999999987


Q ss_pred             ce------------EEEEECCC---hhhHHHHH
Q psy2967          74 RS------------IYMVDAAD---TDKLEASR   91 (101)
Q Consensus        74 ~~------------i~v~d~~~---~~sf~~~~   91 (101)
                      ..            |+|+|.++   +++++.+.
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~  116 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN  116 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH
Confidence            66            99999999   78877664

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=98.93  E-value=2e-09  Score=74.53  Aligned_cols=56  Identities=23%  Similarity=0.423  Sum_probs=49.2

Q ss_pred             CCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCC----------hhhHHHHHHHHHHHHH
Q psy2967          44 MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD----------TDKLEASRNELHALIE   99 (101)
Q Consensus        44 ~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~----------~~sf~~~~~~~~~i~~   99 (101)
                      +.||+|++...+..+++.+.+||++||++++.            |||||+++          ..+|+++..|+.++.+
T Consensus       177 ~~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~  254 (353)
T 1cip_A          177 RVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN  254 (353)
T ss_dssp             CCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred             cCceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHc
Confidence            45788888777888899999999999998887            99999999          5789999999998875

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=98.93  E-value=4.4e-10  Score=78.23  Aligned_cols=68  Identities=9%  Similarity=0.006  Sum_probs=52.2

Q ss_pred             eccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhHH
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLE   88 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf~   88 (101)
                      +|.+++|||||++++.      ....|+...+..+...+..+.+||++|+++|..            |+|+|  +...+.
T Consensus        27 iG~~d~GKSTL~~~L~------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd--~~g~~~   98 (370)
T 2elf_A           27 IGTEKSGRTSLAANLG------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP--PQGLDA   98 (370)
T ss_dssp             EESTTSSHHHHHHTTS------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC--TTCCCH
T ss_pred             ECCCCCCHHHHHHHHH------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc--CCCCcH
Confidence            5999999999999998      344566666667777788899999999998854            99999  444445


Q ss_pred             HHHHHHHH
Q psy2967          89 ASRNELHA   96 (101)
Q Consensus        89 ~~~~~~~~   96 (101)
                      ...+|+..
T Consensus        99 qt~e~~~~  106 (370)
T 2elf_A           99 HTGECIIA  106 (370)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555443

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=98.92  E-value=1.3e-09  Score=81.16  Aligned_cols=75  Identities=15%  Similarity=0.078  Sum_probs=53.1

Q ss_pred             eccCCCcceeeeeccccC--cCC------C------------CCCCccceEEEEEecCcEEEEEEeeCCCCccce-----
Q psy2967          21 MRKITKGNVTIWPVPLSG--QFS------Q------------DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS-----   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~--~~~------~------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----   75 (101)
                      +|.+++|||||++++...  .+.      .            ...+|+......+..+++.+.+|||+|+..|..     
T Consensus        18 vG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~   97 (691)
T 1dar_A           18 AAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERS   97 (691)
T ss_dssp             EECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTCHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccchHHHHHHH
Confidence            699999999999999841  110      0            233555555555677789999999999988765     


Q ss_pred             -------EEEEECCChhhHHHHHHHHH
Q psy2967          76 -------IYMVDAADTDKLEASRNELH   95 (101)
Q Consensus        76 -------i~v~d~~~~~sf~~~~~~~~   95 (101)
                             |+|+|.++..+++....|..
T Consensus        98 l~~aD~~ilVvDa~~g~~~~t~~~~~~  124 (691)
T 1dar_A           98 MRVLDGAIVVFDSSQGVEPQSETVWRQ  124 (691)
T ss_dssp             HHHCSEEEEEEETTTCSCHHHHHHHHH
T ss_pred             HHHCCEEEEEEECCCCcchhhHHHHHH
Confidence                   99999999888887766643

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=98.91  E-value=4.3e-09  Score=73.13  Aligned_cols=56  Identities=29%  Similarity=0.496  Sum_probs=44.1

Q ss_pred             CCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCC----------hhhHHHHHHHHHHHHH
Q psy2967          44 MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD----------TDKLEASRNELHALIE   99 (101)
Q Consensus        44 ~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~----------~~sf~~~~~~~~~i~~   99 (101)
                      ..||+|++...+..+++.+.+||++||++++.            |||||+++          .++|+++..|+..+.+
T Consensus       185 r~~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~  262 (362)
T 1zcb_A          185 RRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVN  262 (362)
T ss_dssp             CCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred             cCCccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhc
Confidence            45678888777888899999999999998877            99999999          7899999999998875

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=98.90  E-value=1.9e-10  Score=81.71  Aligned_cols=81  Identities=22%  Similarity=0.302  Sum_probs=50.4

Q ss_pred             cceeeeEeccCCCcceeeeeccccCcCCCCCCCccceE----EEEEecCcEEEEEEeeCC--------CCccce------
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFN----MRKITKGNVTIKVWDIGG--------QPRFRS------   75 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~----~~~~~~~~~~~~i~D~~G--------~~~~~~------   75 (101)
                      .|.+. .+|.+|||||||++++.+..+. ...++.|..    +..+...+..+.+|||+|        +++++.      
T Consensus        23 ~~~V~-lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~  100 (456)
T 4dcu_A           23 KPVVA-IVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM  100 (456)
T ss_dssp             CCEEE-EECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred             CCEEE-EECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence            44444 3699999999999999987654 233344433    234566778999999999        444433      


Q ss_pred             ------EEEEECCChhhHHHHHHHHHHHH
Q psy2967          76 ------IYMVDAADTDKLEASRNELHALI   98 (101)
Q Consensus        76 ------i~v~d~~~~~sf~~~~~~~~~i~   98 (101)
                            |+|+|..+..+  ....|+.+++
T Consensus       101 ~~ad~il~VvD~~~~~~--~~d~~l~~~l  127 (456)
T 4dcu_A          101 DEADVIIFMVNGREGVT--AADEEVAKIL  127 (456)
T ss_dssp             HHCSEEEEEEESSSCSC--HHHHHHHHHH
T ss_pred             hhCCEEEEEEeCCCCCC--hHHHHHHHHH
Confidence                  88899765433  3344555544

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=98.88  E-value=1.6e-09  Score=76.68  Aligned_cols=75  Identities=13%  Similarity=0.110  Sum_probs=45.2

Q ss_pred             eccCCCcceeeeeccccCcCC--CCCC-CccceEEEEEecCc-EEEEEEeeCCCCccce-------------------EE
Q psy2967          21 MRKITKGNVTIWPVPLSGQFS--QDMI-PTVGFNMRKITKGN-VTIKVWDIGGQPRFRS-------------------IY   77 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~--~~~~-~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~~-------------------i~   77 (101)
                      +|..++|||||++++.+..+.  ..+. .|+......+...+ ..+.+|||+|++.+..                   |+
T Consensus        40 vG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vll  119 (423)
T 3qq5_A           40 AGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGIL  119 (423)
T ss_dssp             ECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEE
T ss_pred             ECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEE
Confidence            599999999999999988763  1222 23333344444333 4899999999976531                   88


Q ss_pred             EEECCChhhHHHHHHHHHHHH
Q psy2967          78 MVDAADTDKLEASRNELHALI   98 (101)
Q Consensus        78 v~d~~~~~sf~~~~~~~~~i~   98 (101)
                      |+|.+..+..   ..|+.++.
T Consensus       120 VvD~~~~~~~---~~~l~~l~  137 (423)
T 3qq5_A          120 VTDSAPTPYE---DDVVNLFK  137 (423)
T ss_dssp             ECSSSCCHHH---HHHHHHHH
T ss_pred             EEeCCChHHH---HHHHHHHH
Confidence            9998444443   34554443

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=98.86  E-value=1.8e-09  Score=75.74  Aligned_cols=73  Identities=14%  Similarity=0.174  Sum_probs=49.5

Q ss_pred             eccCCCcceeeeeccccC---cCCCCCCC--ccceEEEE--Ee-----------------cC----cEEEEEEeeCCCCc
Q psy2967          21 MRKITKGNVTIWPVPLSG---QFSQDMIP--TVGFNMRK--IT-----------------KG----NVTIKVWDIGGQPR   72 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~---~~~~~~~~--t~~~~~~~--~~-----------------~~----~~~~~i~D~~G~~~   72 (101)
                      +|..++|||||++++.+.   .+.++..+  |+...+..  +.                 +.    ...+.+||++|+++
T Consensus        16 iG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~   95 (410)
T 1kk1_A           16 VGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEA   95 (410)
T ss_dssp             ECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSHHH
T ss_pred             ECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEECCChHH
Confidence            599999999999999843   33334444  66554432  11                 11    27899999999988


Q ss_pred             cce------------EEEEECCC----hhhHHHHHHH
Q psy2967          73 FRS------------IYMVDAAD----TDKLEASRNE   93 (101)
Q Consensus        73 ~~~------------i~v~d~~~----~~sf~~~~~~   93 (101)
                      |..            |+|+|.++    +++++.+..|
T Consensus        96 f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~  132 (410)
T 1kk1_A           96 LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL  132 (410)
T ss_dssp             HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH
T ss_pred             HHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH
Confidence            755            99999984    5566665433

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=98.86  E-value=3.6e-10  Score=80.71  Aligned_cols=77  Identities=13%  Similarity=0.139  Sum_probs=46.5

Q ss_pred             EeccCCCcceeeeeccccCcC--CCCCCCccc-eEEEEEecCcEEEEEEeeCCCCccce--------------------E
Q psy2967          20 NMRKITKGNVTIWPVPLSGQF--SQDMIPTVG-FNMRKITKGNVTIKVWDIGGQPRFRS--------------------I   76 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~--~~~~~~t~~-~~~~~~~~~~~~~~i~D~~G~~~~~~--------------------i   76 (101)
                      .+|.+|||||||++++.+.++  ...+..|.. .....+..++..+.+|||+|...+..                    +
T Consensus       229 ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl  308 (462)
T 3geh_A          229 IVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVL  308 (462)
T ss_dssp             EEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCCCSCSEEE
T ss_pred             EEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEE
Confidence            359999999999999998654  333332221 22233555778899999999744321                    8


Q ss_pred             EEEECCChhhHHHHHHHHHHH
Q psy2967          77 YMVDAADTDKLEASRNELHAL   97 (101)
Q Consensus        77 ~v~d~~~~~sf~~~~~~~~~i   97 (101)
                      +|+|.+++.+.+. ..|+..+
T Consensus       309 ~VvD~s~~~~~~~-~~i~~~l  328 (462)
T 3geh_A          309 LTIDAATGWTTGD-QEIYEQV  328 (462)
T ss_dssp             EEEETTTCSCHHH-HHHHHHH
T ss_pred             EEeccCCCCCHHH-HHHHHhc
Confidence            8999999877655 3455443

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=98.84  E-value=9.2e-10  Score=78.76  Aligned_cols=72  Identities=18%  Similarity=0.202  Sum_probs=48.3

Q ss_pred             eeeeE-eccCCCcceeeeeccccC--cCCCC-------------------------------CCCccceEEEEEecCcEE
Q psy2967          16 TVGFN-MRKITKGNVTIWPVPLSG--QFSQD-------------------------------MIPTVGFNMRKITKGNVT   61 (101)
Q Consensus        16 ~~g~~-vG~~~vGKtsl~~~~~~~--~~~~~-------------------------------~~~t~~~~~~~~~~~~~~   61 (101)
                      .+.+. +|.+++|||||+++++..  .+.+.                               .-.|+......+...+..
T Consensus        33 ~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~  112 (483)
T 3p26_A           33 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRAN  112 (483)
T ss_dssp             EEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSCE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCce
Confidence            34444 599999999999998754  11110                               012333334456677899


Q ss_pred             EEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967          62 IKVWDIGGQPRFRS------------IYMVDAADTDKL   87 (101)
Q Consensus        62 ~~i~D~~G~~~~~~------------i~v~d~~~~~sf   87 (101)
                      +.+||++|+++|..            |+|+|.++..++
T Consensus       113 ~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~  150 (483)
T 3p26_A          113 FTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFE  150 (483)
T ss_dssp             EEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC----
T ss_pred             EEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccc
Confidence            99999999998876            999999987543

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.84  E-value=2.1e-09  Score=75.44  Aligned_cols=74  Identities=11%  Similarity=0.149  Sum_probs=47.8

Q ss_pred             EeccCCCcceeeeeccccC---cCCCCCCC--ccceEEEE--Ee-----------------cC----cEEEEEEeeCCCC
Q psy2967          20 NMRKITKGNVTIWPVPLSG---QFSQDMIP--TVGFNMRK--IT-----------------KG----NVTIKVWDIGGQP   71 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~---~~~~~~~~--t~~~~~~~--~~-----------------~~----~~~~~i~D~~G~~   71 (101)
                      .+|..++|||||++++.+.   .+..++.+  |+...+..  +.                 +.    ...+.+||++|++
T Consensus        13 iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~   92 (408)
T 1s0u_A           13 MVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHE   92 (408)
T ss_dssp             EESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEECSSHH
T ss_pred             EEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEECCCHH
Confidence            3599999999999999843   33334444  66554432  11                 11    2789999999998


Q ss_pred             ccce------------EEEEECCC----hhhHHHHHHH
Q psy2967          72 RFRS------------IYMVDAAD----TDKLEASRNE   93 (101)
Q Consensus        72 ~~~~------------i~v~d~~~----~~sf~~~~~~   93 (101)
                      +|..            |+|+|.++    +++++.+..|
T Consensus        93 ~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~  130 (408)
T 1s0u_A           93 TLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL  130 (408)
T ss_dssp             HHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH
Confidence            8755            99999984    5666666433

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.84  E-value=1.3e-09  Score=69.29  Aligned_cols=67  Identities=10%  Similarity=0.047  Sum_probs=38.2

Q ss_pred             eccCCCcceeeeeccccCcCCCCCCCccceEEE--EEecCcEEEEEEeeCCCCc----------cce-------------
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KITKGNVTIKVWDIGGQPR----------FRS-------------   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~D~~G~~~----------~~~-------------   75 (101)
                      +|++|||||||++++.+..+...+.|+.|....  .+...+ .+.+||++|...          ++.             
T Consensus        32 vG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (210)
T 1pui_A           32 AGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQ  110 (210)
T ss_dssp             EECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEE
T ss_pred             ECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhccc
Confidence            599999999999999987765556666664321  122112 578999999742          111             


Q ss_pred             --EEEEECCChhhHH
Q psy2967          76 --IYMVDAADTDKLE   88 (101)
Q Consensus        76 --i~v~d~~~~~sf~   88 (101)
                        ++++|+++..++.
T Consensus       111 ~~~~v~d~~~~~~~~  125 (210)
T 1pui_A          111 GLVVLMDIRHPLKDL  125 (210)
T ss_dssp             EEEEEEETTSCCCHH
T ss_pred             EEEEEEECCCCCchh
Confidence              8899999876654

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=98.83  E-value=3.7e-10  Score=80.63  Aligned_cols=64  Identities=14%  Similarity=0.187  Sum_probs=38.9

Q ss_pred             eccCCCcceeeeecccc--CcCCC-------------------------------CCCCccceEEEEEecCcEEEEEEee
Q psy2967          21 MRKITKGNVTIWPVPLS--GQFSQ-------------------------------DMIPTVGFNMRKITKGNVTIKVWDI   67 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~--~~~~~-------------------------------~~~~t~~~~~~~~~~~~~~~~i~D~   67 (101)
                      +|..++|||||++++..  +.+.+                               ....|+...+..+...+..+.+||+
T Consensus        49 iG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~~~iiDt  128 (467)
T 1r5b_A           49 IGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDA  128 (467)
T ss_dssp             EECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEEEEECCC
T ss_pred             EECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeEEEEEEC
Confidence            59999999999999864  22210                               1234555444456667889999999


Q ss_pred             CCCCccce------------EEEEECCCh
Q psy2967          68 GGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        68 ~G~~~~~~------------i~v~d~~~~   84 (101)
                      +|+++|..            |+|+|.++.
T Consensus       129 PGh~~f~~~~~~~~~~aD~~ilVvDa~~g  157 (467)
T 1r5b_A          129 PGHKGYVTNMINGASQADIGVLVISARRG  157 (467)
T ss_dssp             CC-----------TTSCSEEEEEEECSTT
T ss_pred             CCcHHHHHHHHhhcccCCEEEEEEeCCcC
Confidence            99998866            999999985

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.83  E-value=1e-08  Score=69.43  Aligned_cols=67  Identities=15%  Similarity=0.026  Sum_probs=55.3

Q ss_pred             eeeeeccccCcCC-CCCCCccceEEEE-EecCcEEEEEEeeCCCCccce------------EEEEECCChh-hHHHHHHH
Q psy2967          29 VTIWPVPLSGQFS-QDMIPTVGFNMRK-ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTD-KLEASRNE   93 (101)
Q Consensus        29 tsl~~~~~~~~~~-~~~~~t~~~~~~~-~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~-sf~~~~~~   93 (101)
                      .+|+.+|+.+.|. +.+.||+|..+.. +..+. .+.+||+  +++++.            |+|||++++. +|+.+..|
T Consensus        31 ~sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~  107 (301)
T 1u0l_A           31 GERILCKLRGKFRLQNLKIYVGDRVEYTPDETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKF  107 (301)
T ss_dssp             CCEEEEEECGGGTTTTCCCCTTCEEEEECCCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHH
T ss_pred             CcEEEEEEcccccccCCCCCCccEEEEEEcCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHH
Confidence            3799999999999 8999999966643 22333 7999999  888777            8999999998 79999999


Q ss_pred             HHHHH
Q psy2967          94 LHALI   98 (101)
Q Consensus        94 ~~~i~   98 (101)
                      +.++.
T Consensus       108 l~~~~  112 (301)
T 1u0l_A          108 LVLAE  112 (301)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98764

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=98.83  E-value=6.3e-09  Score=72.88  Aligned_cols=78  Identities=18%  Similarity=0.111  Sum_probs=51.0

Q ss_pred             EeccCCCcceeeeeccccCcCCCC---CCCccceEE-------EE------------EecCcEEEEEEeeCCCCccce--
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQD---MIPTVGFNM-------RK------------ITKGNVTIKVWDIGGQPRFRS--   75 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~---~~~t~~~~~-------~~------------~~~~~~~~~i~D~~G~~~~~~--   75 (101)
                      .+|.+++|||||++++.+......   ...+++...       ..            .......+.+||++|+++|..  
T Consensus        13 vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~~~~~~~   92 (403)
T 3sjy_A           13 VVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATM   92 (403)
T ss_dssp             EECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCGGGHHHH
T ss_pred             EECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcHHHHHHH
Confidence            369999999999999987433221   001110000       00            011227899999999998876  


Q ss_pred             ----------EEEEECCChhhHHHHHHHHHHH
Q psy2967          76 ----------IYMVDAADTDKLEASRNELHAL   97 (101)
Q Consensus        76 ----------i~v~d~~~~~sf~~~~~~~~~i   97 (101)
                                ++|+|.++..++....+|+..+
T Consensus        93 ~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~  124 (403)
T 3sjy_A           93 LSGAALMDGAILVVAANEPFPQPQTREHFVAL  124 (403)
T ss_dssp             HHHHTTCSEEEEEEETTSCSSCHHHHHHHHHH
T ss_pred             HHHHhhCCEEEEEEECCCCCCcHHHHHHHHHH
Confidence                      9999999887677777776544

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=98.83  E-value=3.7e-09  Score=71.55  Aligned_cols=51  Identities=18%  Similarity=0.079  Sum_probs=36.2

Q ss_pred             eccCCCcceeeeeccccCcCC--CCCCCccc-eEEEEEecCcEEEEEEeeCCCC
Q psy2967          21 MRKITKGNVTIWPVPLSGQFS--QDMIPTVG-FNMRKITKGNVTIKVWDIGGQP   71 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~--~~~~~t~~-~~~~~~~~~~~~~~i~D~~G~~   71 (101)
                      +|.+|||||||++++.+..+.  .....|.. .....+..++..+.+|||+|..
T Consensus        14 vG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~   67 (301)
T 1ega_A           14 VGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH   67 (301)
T ss_dssp             ECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCC
T ss_pred             ECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCC
Confidence            599999999999999987653  12222222 2222355678899999999997

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=98.82  E-value=1.2e-10  Score=84.56  Aligned_cols=72  Identities=17%  Similarity=0.162  Sum_probs=52.7

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEE--EEEec-CcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM--RKITK-GNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~--~~~~~-~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      .+|.+++|||||++++....+.....+++..++  ..+.. .+..+.+|||+|++.|..            |+|+|.++.
T Consensus         9 IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg   88 (537)
T 3izy_P            9 IMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDG   88 (537)
T ss_dssp             EEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSC
T ss_pred             EECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCC
Confidence            469999999999999998776655555544332  22332 456789999999998776            999999986


Q ss_pred             hhHHHHH
Q psy2967          85 DKLEASR   91 (101)
Q Consensus        85 ~sf~~~~   91 (101)
                      ...+...
T Consensus        89 ~~~qt~e   95 (537)
T 3izy_P           89 VMKQTVE   95 (537)
T ss_dssp             CCHHHHH
T ss_pred             ccHHHHH
Confidence            6554443

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=98.81  E-value=1.2e-09  Score=78.31  Aligned_cols=71  Identities=20%  Similarity=0.211  Sum_probs=48.1

Q ss_pred             EeccCCCcceeeeeccccCc-------CCCCCC--CccceEEEEEecCcEEEEEEeeCCCCccce------------EEE
Q psy2967          20 NMRKITKGNVTIWPVPLSGQ-------FSQDMI--PTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYM   78 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~-------~~~~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v   78 (101)
                      .+|..++|||||++++.+..       +..+..  .|+...+..+...+..+.+||++|+++|..            |+|
T Consensus        24 iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilV  103 (482)
T 1wb1_A           24 IFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIV  103 (482)
T ss_dssp             EEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEE
T ss_pred             EECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhCCEEEEE
Confidence            35999999999999998765       222222  344444444555778999999999988754            999


Q ss_pred             EECCC---hhhHHHH
Q psy2967          79 VDAAD---TDKLEAS   90 (101)
Q Consensus        79 ~d~~~---~~sf~~~   90 (101)
                      +|.++   +++++.+
T Consensus       104 vda~~g~~~qt~e~l  118 (482)
T 1wb1_A          104 VDAKEGPKTQTGEHM  118 (482)
T ss_dssp             EETTTCSCHHHHHHH
T ss_pred             EecCCCccHHHHHHH
Confidence            99988   5666555

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=98.79  E-value=6.8e-10  Score=80.02  Aligned_cols=76  Identities=21%  Similarity=0.290  Sum_probs=52.0

Q ss_pred             cceeeeEeccCCCcceeeeeccccCcCCCCCCCcc--ceEEEEEecCcEEEEEEeeCCCCccce------------EEEE
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTV--GFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMV   79 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~--~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~   79 (101)
                      .|.+. .+|..++|||||++++....+.....+.+  ......+..++..+.+|||+|++.|..            ++|+
T Consensus         4 ~~~V~-IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVV   82 (501)
T 1zo1_I            4 APVVT-IMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVV   82 (501)
T ss_dssp             CCCEE-EEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEE
T ss_pred             CeEEE-EECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEe
Confidence            34444 36999999999999998766554332222  222223444566889999999998866            9999


Q ss_pred             ECCC---hhhHHHH
Q psy2967          80 DAAD---TDKLEAS   90 (101)
Q Consensus        80 d~~~---~~sf~~~   90 (101)
                      |.++   +++.+.+
T Consensus        83 da~~g~~~qT~e~l   96 (501)
T 1zo1_I           83 AADDGVMPQTIEAI   96 (501)
T ss_dssp             ETTTBSCTTTHHHH
T ss_pred             ecccCccHHHHHHH
Confidence            9987   4555544

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=98.79  E-value=7.1e-09  Score=72.59  Aligned_cols=76  Identities=14%  Similarity=0.135  Sum_probs=51.9

Q ss_pred             EeccCCCcceeeeeccccC--------cCCC-----------CCCCccceEEEEEecCcEEEEEEeeCCCCccce-----
Q psy2967          20 NMRKITKGNVTIWPVPLSG--------QFSQ-----------DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS-----   75 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~--------~~~~-----------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----   75 (101)
                      .+|.+++|||||++++...        .+..           ....|+......+...+..+.+||++|+++|..     
T Consensus        16 iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~   95 (405)
T 2c78_A           16 TIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITG   95 (405)
T ss_dssp             EECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHHHHHHH
T ss_pred             EEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHHHHHHHH
Confidence            3599999999999999863        2211           011233333344666778999999999998765     


Q ss_pred             -------EEEEECCChhhHHHHHHHHHH
Q psy2967          76 -------IYMVDAADTDKLEASRNELHA   96 (101)
Q Consensus        76 -------i~v~d~~~~~sf~~~~~~~~~   96 (101)
                             |+|+|.++....+ ..+|+..
T Consensus        96 ~~~aD~~ilVvda~~g~~~q-t~~~l~~  122 (405)
T 2c78_A           96 AAQMDGAILVVSAADGPMPQ-TREHILL  122 (405)
T ss_dssp             HTTCSSEEEEEETTTCCCHH-HHHHHHH
T ss_pred             HHHCCEEEEEEECCCCCcHH-HHHHHHH
Confidence                   9999998865433 3445443

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.78  E-value=8.1e-09  Score=72.98  Aligned_cols=65  Identities=18%  Similarity=0.231  Sum_probs=45.6

Q ss_pred             eccCCCcceeeeeccccCc--CCCC----------CCC-----------------------ccceEEEEEecCcEEEEEE
Q psy2967          21 MRKITKGNVTIWPVPLSGQ--FSQD----------MIP-----------------------TVGFNMRKITKGNVTIKVW   65 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~--~~~~----------~~~-----------------------t~~~~~~~~~~~~~~~~i~   65 (101)
                      +|..++|||||+++++.+.  +...          ..+                       |+...+..+...+..+.+|
T Consensus        30 iG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~~~~~ii  109 (434)
T 1zun_B           30 CGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKRKFIIA  109 (434)
T ss_dssp             ECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSSEEEEEE
T ss_pred             EECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCCceEEEE
Confidence            5999999999999997543  1110          112                       2223334456677899999


Q ss_pred             eeCCCCccce------------EEEEECCChh
Q psy2967          66 DIGGQPRFRS------------IYMVDAADTD   85 (101)
Q Consensus        66 D~~G~~~~~~------------i~v~d~~~~~   85 (101)
                      |++|+++|..            |+|+|.++..
T Consensus       110 DtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~  141 (434)
T 1zun_B          110 DTPGHEQYTRNMATGASTCDLAIILVDARYGV  141 (434)
T ss_dssp             ECCCSGGGHHHHHHHHTTCSEEEEEEETTTCS
T ss_pred             ECCChHHHHHHHHHHHhhCCEEEEEEECCCCC
Confidence            9999998865            9999998864

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=98.77  E-value=2.6e-09  Score=75.89  Aligned_cols=67  Identities=10%  Similarity=0.098  Sum_probs=44.5

Q ss_pred             EeccCCCcceeeeeccccCcC--CCCCCCccc-eEEEEEecCcEEEEEEeeCC----------CCccce-----------
Q psy2967          20 NMRKITKGNVTIWPVPLSGQF--SQDMIPTVG-FNMRKITKGNVTIKVWDIGG----------QPRFRS-----------   75 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~--~~~~~~t~~-~~~~~~~~~~~~~~i~D~~G----------~~~~~~-----------   75 (101)
                      .+|.++||||||++++.+.+.  ...+..|.. .....+...+..+.+|||+|          ++++..           
T Consensus       200 ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad  279 (456)
T 4dcu_A          200 LIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSE  279 (456)
T ss_dssp             EECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCS
T ss_pred             EecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCC
Confidence            469999999999999997642  222222221 11234556677999999999          665543           


Q ss_pred             --EEEEECCChhh
Q psy2967          76 --IYMVDAADTDK   86 (101)
Q Consensus        76 --i~v~d~~~~~s   86 (101)
                        |+|+|.++..+
T Consensus       280 ~~llviD~~~~~~  292 (456)
T 4dcu_A          280 VVAVVLDGEEGII  292 (456)
T ss_dssp             EEEEEEETTTCCC
T ss_pred             EEEEEEeCCCCcC
Confidence              88999987544

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=98.77  E-value=9.8e-09  Score=76.42  Aligned_cols=74  Identities=18%  Similarity=0.142  Sum_probs=52.3

Q ss_pred             eccCCCcceeeeecccc--CcCCC------------------CCCCccceEEEEEecCcEEEEEEeeCCCCccce-----
Q psy2967          21 MRKITKGNVTIWPVPLS--GQFSQ------------------DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS-----   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~--~~~~~------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----   75 (101)
                      +|.+++|||||+++++.  +.+..                  ....|+......+..++..+.+|||+|+..|..     
T Consensus        16 vG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~   95 (693)
T 2xex_A           16 MAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERS   95 (693)
T ss_dssp             ECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSCCHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcchHHHHHHH
Confidence            59999999999999984  22210                  112334433444666789999999999988765     


Q ss_pred             -------EEEEECCChhhHHHHHHHH
Q psy2967          76 -------IYMVDAADTDKLEASRNEL   94 (101)
Q Consensus        76 -------i~v~d~~~~~sf~~~~~~~   94 (101)
                             |+|+|.++..+++....|.
T Consensus        96 l~~aD~~llVvDa~~g~~~~~~~~~~  121 (693)
T 2xex_A           96 LRVLDGAVTVLDAQSGVEPQTETVWR  121 (693)
T ss_dssp             HHHCSEEEEEEETTTBSCHHHHHHHH
T ss_pred             HHHCCEEEEEECCCCCCcHHHHHHHH
Confidence                   9999999988877766554

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=98.76  E-value=2.4e-09  Score=77.57  Aligned_cols=79  Identities=16%  Similarity=0.140  Sum_probs=55.1

Q ss_pred             cceeeeEeccCCCcceeeeecccc------------------CcCCC------CCCCccceEEEEEecCcEEEEEEeeCC
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLS------------------GQFSQ------DMIPTVGFNMRKITKGNVTIKVWDIGG   69 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~------------------~~~~~------~~~~t~~~~~~~~~~~~~~~~i~D~~G   69 (101)
                      ++.+.+ +|.+++|||||++++..                  .....      ....|+......+..+++.+.+|||+|
T Consensus        13 ~r~IaI-iG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG   91 (528)
T 3tr5_A           13 RRTFAI-ISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG   91 (528)
T ss_dssp             EEEEEE-EECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred             CCEEEE-ECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence            344443 69999999999999961                  11110      011233344445677889999999999


Q ss_pred             CCccce------------EEEEECCChhhHHHHHHH
Q psy2967          70 QPRFRS------------IYMVDAADTDKLEASRNE   93 (101)
Q Consensus        70 ~~~~~~------------i~v~d~~~~~sf~~~~~~   93 (101)
                      +++|..            |+|+|.++..+.+....|
T Consensus        92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~  127 (528)
T 3tr5_A           92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM  127 (528)
T ss_dssp             STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH
T ss_pred             chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH
Confidence            998776            999999998777776555

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=98.76  E-value=5.3e-09  Score=73.17  Aligned_cols=67  Identities=15%  Similarity=0.125  Sum_probs=47.7

Q ss_pred             eccCCCcceeeeeccccC-------cCCC-----------CCCCccceEEEEEecCcEEEEEEeeCCCCccce-------
Q psy2967          21 MRKITKGNVTIWPVPLSG-------QFSQ-----------DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS-------   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~-------~~~~-----------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------   75 (101)
                      +|..++|||||++++...       .+..           ....|+...+..+...+..+.+||++|+++|..       
T Consensus         9 iG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~   88 (397)
T 1d2e_A            9 IGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTA   88 (397)
T ss_dssp             ESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTSS
T ss_pred             EeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHHHHhhHh
Confidence            599999999999999863       1110           112244444444666778999999999988754       


Q ss_pred             -----EEEEECCChhhH
Q psy2967          76 -----IYMVDAADTDKL   87 (101)
Q Consensus        76 -----i~v~d~~~~~sf   87 (101)
                           |+|+|.++....
T Consensus        89 ~aD~~ilVvda~~g~~~  105 (397)
T 1d2e_A           89 PLDGCILVVAANDGPMP  105 (397)
T ss_dssp             CCSEEEEEEETTTCSCH
T ss_pred             hCCEEEEEEECCCCCCH
Confidence                 999999985443

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=98.76  E-value=8.7e-09  Score=75.65  Aligned_cols=77  Identities=17%  Similarity=0.239  Sum_probs=46.3

Q ss_pred             eccCCCcceeeeeccccC--cCC-----CCC------CCccceEEE----EE-----ecCcEEEEEEeeCCCCccce---
Q psy2967          21 MRKITKGNVTIWPVPLSG--QFS-----QDM------IPTVGFNMR----KI-----TKGNVTIKVWDIGGQPRFRS---   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~--~~~-----~~~------~~t~~~~~~----~~-----~~~~~~~~i~D~~G~~~~~~---   75 (101)
                      +|..++|||||+.++...  .+.     ..+      +.+.|..+.    .+     ++..+.+.+|||+|++.|..   
T Consensus        10 iGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF~~ev~   89 (599)
T 3cb4_D           10 IAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVS   89 (599)
T ss_dssp             ECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGGHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHHHHHHH
Confidence            599999999999999752  111     111      112232221    22     23458999999999998865   


Q ss_pred             ---------EEEEECCChhhHHHHHHHHHHH
Q psy2967          76 ---------IYMVDAADTDKLEASRNELHAL   97 (101)
Q Consensus        76 ---------i~v~d~~~~~sf~~~~~~~~~i   97 (101)
                               |+|+|.++..+++....|....
T Consensus        90 ~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~  120 (599)
T 3cb4_D           90 RSLAACEGALLVVDAGQGVEAQTLANCYTAM  120 (599)
T ss_dssp             HHHHHCSEEEEEEETTTCCCTHHHHHHHHHH
T ss_pred             HHHHHCCEEEEEEECCCCCCHHHHHHHHHHH
Confidence                     9999999988887777776544

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=98.76  E-value=6.8e-09  Score=72.86  Aligned_cols=77  Identities=19%  Similarity=0.198  Sum_probs=43.5

Q ss_pred             eccCCCcceeeeeccccCcCC-CCC-----CCccceEEEE-------------------Eec-CcEEEEEEeeCCCCcc-
Q psy2967          21 MRKITKGNVTIWPVPLSGQFS-QDM-----IPTVGFNMRK-------------------ITK-GNVTIKVWDIGGQPRF-   73 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~-~~~-----~~t~~~~~~~-------------------~~~-~~~~~~i~D~~G~~~~-   73 (101)
                      +|.+|||||||++++.+.... .++     .|+.|.....                   +.. +.+.+.+||++|..+. 
T Consensus         6 vG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~~~~a   85 (397)
T 1wxq_A            6 VGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGLVPGA   85 (397)
T ss_dssp             EECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC------
T ss_pred             ECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCcccch
Confidence            699999999999999987632 122     2344432211                   111 1478999999997431 


Q ss_pred             ---c-----------e----EEEEECCCh-----------hhHHHHHHHHHHH
Q psy2967          74 ---R-----------S----IYMVDAADT-----------DKLEASRNELHAL   97 (101)
Q Consensus        74 ---~-----------~----i~v~d~~~~-----------~sf~~~~~~~~~i   97 (101)
                         +           .    ++|+|+++.           +.+..+..+..++
T Consensus        86 ~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL  138 (397)
T 1wxq_A           86 HEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREI  138 (397)
T ss_dssp             ---------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHH
Confidence               1           1    889999886           5666665554444

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=98.75  E-value=1.3e-08  Score=67.86  Aligned_cols=22  Identities=9%  Similarity=0.113  Sum_probs=19.5

Q ss_pred             EeccCCCcceeeeeccccCcCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFS   41 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~   41 (101)
                      .+|.+|||||||++++.+.++.
T Consensus        31 vvG~~~~GKSSLln~l~g~~~~   52 (299)
T 2aka_B           31 VVGGQSAGKSSVLENFVGRDFL   52 (299)
T ss_dssp             EEEBTTSCHHHHHHHHHTSCCS
T ss_pred             EEeCCCCCHHHHHHHHHCCCcC
Confidence            3699999999999999988774

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=98.75  E-value=4.1e-09  Score=79.90  Aligned_cols=75  Identities=15%  Similarity=0.194  Sum_probs=52.3

Q ss_pred             eccCCCcceeeeeccccC------------cCCC------CCCCccceEEEEE----------------ecCcEEEEEEe
Q psy2967          21 MRKITKGNVTIWPVPLSG------------QFSQ------DMIPTVGFNMRKI----------------TKGNVTIKVWD   66 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~------------~~~~------~~~~t~~~~~~~~----------------~~~~~~~~i~D   66 (101)
                      +|..++|||||+++++..            .+.+      ....|+......+                +++++.+.+||
T Consensus        25 iG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~liD  104 (842)
T 1n0u_A           25 IAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLID  104 (842)
T ss_dssp             ECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEEEEEC
T ss_pred             ECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCceEEEEE
Confidence            599999999999998863            1111      1112443322221                23478999999


Q ss_pred             eCCCCccce------------EEEEECCChhhHHHHHHHHH
Q psy2967          67 IGGQPRFRS------------IYMVDAADTDKLEASRNELH   95 (101)
Q Consensus        67 ~~G~~~~~~------------i~v~d~~~~~sf~~~~~~~~   95 (101)
                      |+|+.+|..            |+|+|.++..+++....|..
T Consensus       105 TPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~  145 (842)
T 1n0u_A          105 SPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQ  145 (842)
T ss_dssp             CCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHH
T ss_pred             CcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH
Confidence            999998876            99999999988888766654

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=98.75  E-value=7.3e-09  Score=73.41  Aligned_cols=64  Identities=14%  Similarity=0.156  Sum_probs=46.3

Q ss_pred             eccCCCcceeeeeccccC--cCC-----------------------------CCC--CCccceEEEEEecCcEEEEEEee
Q psy2967          21 MRKITKGNVTIWPVPLSG--QFS-----------------------------QDM--IPTVGFNMRKITKGNVTIKVWDI   67 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~--~~~-----------------------------~~~--~~t~~~~~~~~~~~~~~~~i~D~   67 (101)
                      +|.+++|||||++++...  .+.                             .+.  ..|+...+..+...+..+.+|||
T Consensus        23 iG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~~~~iiDT  102 (439)
T 3j2k_7           23 IGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDA  102 (439)
T ss_pred             EeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCeEEEEEEC
Confidence            599999999999999532  111                             111  12334444456777889999999


Q ss_pred             CCCCccce------------EEEEECCCh
Q psy2967          68 GGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        68 ~G~~~~~~------------i~v~d~~~~   84 (101)
                      +|+++|..            |+|+|.++.
T Consensus       103 PGh~~f~~~~~~~~~~aD~~ilVVDa~~g  131 (439)
T 3j2k_7          103 PGHKSFVPNMIGGASQADLAVLVISARKG  131 (439)
T ss_pred             CChHHHHHHHHhhHhhCCEEEEEEECCCC
Confidence            99998866            899999875

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=98.73  E-value=2.6e-08  Score=69.03  Aligned_cols=42  Identities=14%  Similarity=0.413  Sum_probs=36.1

Q ss_pred             CcEEEEEEeeCCCCccce------------EEEEECC----------ChhhHHHHHHHHHHHHH
Q psy2967          58 GNVTIKVWDIGGQPRFRS------------IYMVDAA----------DTDKLEASRNELHALIE   99 (101)
Q Consensus        58 ~~~~~~i~D~~G~~~~~~------------i~v~d~~----------~~~sf~~~~~~~~~i~~   99 (101)
                      +.+.+++||++||++++.            |+|||++          +.++|+++..|+.++.+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~  244 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK  244 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHT
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHh
Confidence            579999999999999887            9999998          88999999999998875

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=98.72  E-value=1.8e-08  Score=67.11  Aligned_cols=68  Identities=13%  Similarity=0.110  Sum_probs=40.4

Q ss_pred             EeccCCCcceeeeecccc-CcCCCCC-------CCccceEEEE--E--ecCcEEEEEEeeCCCCccceEEEEECCChhhH
Q psy2967          20 NMRKITKGNVTIWPVPLS-GQFSQDM-------IPTVGFNMRK--I--TKGNVTIKVWDIGGQPRFRSIYMVDAADTDKL   87 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~-~~~~~~~-------~~t~~~~~~~--~--~~~~~~~~i~D~~G~~~~~~i~v~d~~~~~sf   87 (101)
                      .+|.+|+|||||++++.. +.+...+       .+|++.+...  +  .+..+.+.+|||+|....       ..+.+++
T Consensus        13 vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~-------~~~~~~~   85 (274)
T 3t5d_A           13 VVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA-------VDNSNCW   85 (274)
T ss_dssp             EEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCC-------SCCTTTT
T ss_pred             EECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcccc-------ccchhhH
Confidence            469999999999999654 4455455       6777766644  3  234479999999998542       2344556


Q ss_pred             HHHHHHH
Q psy2967          88 EASRNEL   94 (101)
Q Consensus        88 ~~~~~~~   94 (101)
                      ..+..++
T Consensus        86 ~~i~~~i   92 (274)
T 3t5d_A           86 QPVIDYI   92 (274)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6654433

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=98.71  E-value=1.1e-08  Score=75.15  Aligned_cols=77  Identities=17%  Similarity=0.289  Sum_probs=48.8

Q ss_pred             eccCCCcceeeeeccccC--cCC-----CCCCCc------cceEE----EEE-----ecCcEEEEEEeeCCCCccce---
Q psy2967          21 MRKITKGNVTIWPVPLSG--QFS-----QDMIPT------VGFNM----RKI-----TKGNVTIKVWDIGGQPRFRS---   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~--~~~-----~~~~~t------~~~~~----~~~-----~~~~~~~~i~D~~G~~~~~~---   75 (101)
                      +|..++|||||++++...  .+.     ..+..+      .|..+    ..+     ++..+.+.+|||+|+..|..   
T Consensus        12 iGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF~~ev~   91 (600)
T 2ywe_A           12 IAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFSYEVS   91 (600)
T ss_dssp             ECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGGHHHHH
T ss_pred             ECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhHHHHHH
Confidence            599999999999999752  111     111111      11111    111     23458999999999998865   


Q ss_pred             ---------EEEEECCChhhHHHHHHHHHHH
Q psy2967          76 ---------IYMVDAADTDKLEASRNELHAL   97 (101)
Q Consensus        76 ---------i~v~d~~~~~sf~~~~~~~~~i   97 (101)
                               |+|+|.++..+++....|....
T Consensus        92 r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~  122 (600)
T 2ywe_A           92 RALAACEGALLLIDASQGIEAQTVANFWKAV  122 (600)
T ss_dssp             HHHHTCSEEEEEEETTTBCCHHHHHHHHHHH
T ss_pred             HHHHhCCEEEEEEECCCCccHHHHHHHHHHH
Confidence                     9999999988888887776544

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=98.70  E-value=8.1e-09  Score=73.53  Aligned_cols=65  Identities=14%  Similarity=0.168  Sum_probs=49.2

Q ss_pred             EeccCCCcceeeeeccccC--cCCC-------------------------------CCCCccceEEEEEecCcEEEEEEe
Q psy2967          20 NMRKITKGNVTIWPVPLSG--QFSQ-------------------------------DMIPTVGFNMRKITKGNVTIKVWD   66 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~--~~~~-------------------------------~~~~t~~~~~~~~~~~~~~~~i~D   66 (101)
                      .+|.+++|||||+++++..  .+.+                               ....|+...+..+...+..+.+||
T Consensus        12 iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~~~iiD   91 (458)
T 1f60_A           12 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQVTVID   91 (458)
T ss_dssp             EEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEEEEEE
T ss_pred             EEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCceEEEEE
Confidence            3599999999999999753  2211                               122455555556777889999999


Q ss_pred             eCCCCccce------------EEEEECCCh
Q psy2967          67 IGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        67 ~~G~~~~~~------------i~v~d~~~~   84 (101)
                      |+|+++|..            |+|+|.++.
T Consensus        92 tPGh~~f~~~~~~~~~~aD~~ilVvda~~g  121 (458)
T 1f60_A           92 APGHRDFIKNMITGTSQADCAILIIAGGVG  121 (458)
T ss_dssp             CCCCTTHHHHHHHSSSCCSEEEEEEECSHH
T ss_pred             CCCcHHHHHHHHhhhhhCCEEEEEEeCCcC
Confidence            999998765            999999875

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=98.67  E-value=2.6e-08  Score=70.40  Aligned_cols=70  Identities=13%  Similarity=0.065  Sum_probs=45.0

Q ss_pred             EeccCCCcceeeeeccccCcC--CCCCCCccc-eEEEEEecCcEEEEEEeeCCCCcc-----------ce----------
Q psy2967          20 NMRKITKGNVTIWPVPLSGQF--SQDMIPTVG-FNMRKITKGNVTIKVWDIGGQPRF-----------RS----------   75 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~--~~~~~~t~~-~~~~~~~~~~~~~~i~D~~G~~~~-----------~~----------   75 (101)
                      .+|++|||||||++++.+..+  ...+..|.. .....+...+..+.+|||+|..+.           ..          
T Consensus       185 ivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~a  264 (439)
T 1mky_A          185 IVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKA  264 (439)
T ss_dssp             EECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHC
T ss_pred             EECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhC
Confidence            369999999999999998754  222222221 222335556668899999997321           11          


Q ss_pred             ---EEEEECCChhhHHH
Q psy2967          76 ---IYMVDAADTDKLEA   89 (101)
Q Consensus        76 ---i~v~d~~~~~sf~~   89 (101)
                         ++|+|.++..+++.
T Consensus       265 d~vllv~d~~~~~~~~~  281 (439)
T 1mky_A          265 DVVVIVLDATQGITRQD  281 (439)
T ss_dssp             SEEEEEEETTTCCCHHH
T ss_pred             CEEEEEEeCCCCCCHHH
Confidence               78899998777655

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=98.65  E-value=1.8e-08  Score=74.13  Aligned_cols=64  Identities=19%  Similarity=0.197  Sum_probs=46.3

Q ss_pred             eccCCCcceeeeeccccCcCC--CC-------------------------------CCCccceEEEEEecCcEEEEEEee
Q psy2967          21 MRKITKGNVTIWPVPLSGQFS--QD-------------------------------MIPTVGFNMRKITKGNVTIKVWDI   67 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~--~~-------------------------------~~~t~~~~~~~~~~~~~~~~i~D~   67 (101)
                      +|.+++|||||+++++.....  ..                               ...|+...+..+...+..+.+|||
T Consensus       173 vG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~~~~iiDT  252 (611)
T 3izq_1          173 LGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDA  252 (611)
T ss_dssp             ECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSCEEEEEEC
T ss_pred             EECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCceEEEEEC
Confidence            599999999999999854211  00                               112333333456677889999999


Q ss_pred             CCCCccce------------EEEEECCCh
Q psy2967          68 GGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        68 ~G~~~~~~------------i~v~d~~~~   84 (101)
                      +|+++|..            |+|+|.++.
T Consensus       253 PG~e~f~~~~~~~~~~aD~~llVVDa~~g  281 (611)
T 3izq_1          253 PGHRDFVPNAIMGISQADMAILCVDCSTN  281 (611)
T ss_dssp             CSSSCHHHHHTTTSSCCSEEEEEEECSHH
T ss_pred             CCCcccHHHHHHHHhhcCceEEEEECCCC
Confidence            99998765            899999873

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.64  E-value=1.2e-08  Score=70.76  Aligned_cols=52  Identities=15%  Similarity=0.157  Sum_probs=28.6

Q ss_pred             eEeccCCCcceeeeecccc-CcCCCCC--------CCccceEEEE--Ee--cCcEEEEEEeeCCC
Q psy2967          19 FNMRKITKGNVTIWPVPLS-GQFSQDM--------IPTVGFNMRK--IT--KGNVTIKVWDIGGQ   70 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~-~~~~~~~--------~~t~~~~~~~--~~--~~~~~~~i~D~~G~   70 (101)
                      ..+|++|+|||||++++.. +.+...+        .+|++.....  +.  +..+.+.+||++|+
T Consensus        41 ~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~  105 (361)
T 2qag_A           41 MVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGY  105 (361)
T ss_dssp             EECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC----
T ss_pred             EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccc
Confidence            3469999999999999654 4444333        2566655543  22  23468999999999

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=98.64  E-value=1.1e-08  Score=71.81  Aligned_cols=70  Identities=19%  Similarity=0.173  Sum_probs=33.8

Q ss_pred             eccCCCcceeeeeccccCcCCCCC--CCccceEEEEEecC-----------------cEEEEEEeeCCCCccce------
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQDM--IPTVGFNMRKITKG-----------------NVTIKVWDIGGQPRFRS------   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~~~--~~t~~~~~~~~~~~-----------------~~~~~i~D~~G~~~~~~------   75 (101)
                      +|.+|||||||++++.+..+....  ..|+..+...+...                 ...+.+||++|..+..+      
T Consensus        28 VG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~~glg  107 (396)
T 2ohf_A           28 VGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLG  107 (396)
T ss_dssp             ECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----------C
T ss_pred             ECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccchhhHHH
Confidence            689999999999999987553221  23344433332211                 34699999999876432      


Q ss_pred             -------------EEEEECCChhhHHHH
Q psy2967          76 -------------IYMVDAADTDKLEAS   90 (101)
Q Consensus        76 -------------i~v~d~~~~~sf~~~   90 (101)
                                   ++|+|+++.+++.++
T Consensus       108 ~~~l~~ir~aD~Il~VvD~~~~~~i~~v  135 (396)
T 2ohf_A          108 NAFLSHISACDGIFHLTRAFEDDDITHV  135 (396)
T ss_dssp             CHHHHHHHTSSSEEEEEEC---------
T ss_pred             HHHHHHHHhcCeEEEEEecCCCcchhhh
Confidence                         889999887666543

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=98.62  E-value=4.1e-08  Score=73.20  Aligned_cols=73  Identities=14%  Similarity=-0.011  Sum_probs=49.7

Q ss_pred             eccCCCcceeeeeccccC--cCCC------------------CCCCccceEEEEEecCc-------EEEEEEeeCCCCcc
Q psy2967          21 MRKITKGNVTIWPVPLSG--QFSQ------------------DMIPTVGFNMRKITKGN-------VTIKVWDIGGQPRF   73 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~--~~~~------------------~~~~t~~~~~~~~~~~~-------~~~~i~D~~G~~~~   73 (101)
                      +|..++|||||+.++...  .+..                  ....|+......+..++       +.+.+|||+|+..|
T Consensus        16 iG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDTPG~~df   95 (704)
T 2rdo_7           16 SAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDF   95 (704)
T ss_pred             ECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeCCCccch
Confidence            699999999999999642  1111                  11223333333344333       89999999999887


Q ss_pred             ce------------EEEEECCChhhHHHHHHH
Q psy2967          74 RS------------IYMVDAADTDKLEASRNE   93 (101)
Q Consensus        74 ~~------------i~v~d~~~~~sf~~~~~~   93 (101)
                      ..            |+|+|.++..+.+....|
T Consensus        96 ~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~  127 (704)
T 2rdo_7           96 TIEVERSMRVLDGAVMVYCAVGGVQPQSETVW  127 (704)
T ss_pred             HHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH
Confidence            55            999999987766655544

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=98.58  E-value=2.8e-08  Score=72.01  Aligned_cols=66  Identities=18%  Similarity=0.255  Sum_probs=43.8

Q ss_pred             eccCCCcceeeeeccccC--cCCC------------------CCCCccceE----EEEEecCcEEEEEEeeCCCCccce-
Q psy2967          21 MRKITKGNVTIWPVPLSG--QFSQ------------------DMIPTVGFN----MRKITKGNVTIKVWDIGGQPRFRS-   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~--~~~~------------------~~~~t~~~~----~~~~~~~~~~~~i~D~~G~~~~~~-   75 (101)
                      +|.+++|||||++++...  .+..                  ...++.|..    ...+..++..+.+|||+|++.|.. 
T Consensus        19 iG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~~df~~~   98 (529)
T 2h5e_A           19 ISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSED   98 (529)
T ss_dssp             EECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCSTTCCHH
T ss_pred             ECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCChhHHHH
Confidence            599999999999999852  1100                  001122222    234567789999999999988765 


Q ss_pred             -----------EEEEECCChhh
Q psy2967          76 -----------IYMVDAADTDK   86 (101)
Q Consensus        76 -----------i~v~d~~~~~s   86 (101)
                                 |+|+|.++...
T Consensus        99 ~~~~l~~aD~~IlVvDa~~g~~  120 (529)
T 2h5e_A           99 TYRTLTAVDCCLMVIDAAKGVE  120 (529)
T ss_dssp             HHHGGGGCSEEEEEEETTTCSC
T ss_pred             HHHHHHHCCEEEEEEeCCccch
Confidence                       99999987643

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=98.56  E-value=3.3e-08  Score=71.90  Aligned_cols=26  Identities=15%  Similarity=0.155  Sum_probs=20.9

Q ss_pred             cceeeeEeccCCCcceeeeeccccCcC
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLSGQF   40 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~   40 (101)
                      .|.+. .+|.+|+|||||++++++.++
T Consensus        65 ~~~V~-vvG~~n~GKSTLIN~Llg~~~   90 (550)
T 2qpt_A           65 KPMVL-VAGQYSTGKTSFIQYLLEQEV   90 (550)
T ss_dssp             CCEEE-EEEBTTSCHHHHHHHHHTSCC
T ss_pred             CcEEE-EECCCCCCHHHHHHHHhCCcc
Confidence            34443 369999999999999998876

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=98.55  E-value=6.7e-08  Score=67.28  Aligned_cols=61  Identities=11%  Similarity=0.102  Sum_probs=41.4

Q ss_pred             eccCCCcceeeeeccccCcC-CCC-----CCCccceEEEEEe-------------------cCcEEEEEEeeCCCCccce
Q psy2967          21 MRKITKGNVTIWPVPLSGQF-SQD-----MIPTVGFNMRKIT-------------------KGNVTIKVWDIGGQPRFRS   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~-~~~-----~~~t~~~~~~~~~-------------------~~~~~~~i~D~~G~~~~~~   75 (101)
                      +|.+|||||||++++..... ..+     ..|+++..  .+.                   .....+.+||++|..+...
T Consensus         7 VG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~--~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~~a~   84 (368)
T 2dby_A            7 VGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV--PLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVKGAH   84 (368)
T ss_dssp             ECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE--ECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCCCCC
T ss_pred             ECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE--ecChHHHHHHHHHhcccccccccCCceEEEEECCCcccccc
Confidence            69999999999999987542 122     23444432  111                   1246799999999876421


Q ss_pred             -------------------EEEEECCC
Q psy2967          76 -------------------IYMVDAAD   83 (101)
Q Consensus        76 -------------------i~v~d~~~   83 (101)
                                         ++|+|+++
T Consensus        85 ~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           85 KGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             SSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             ccchHHHHHHHHHHhCCEEEEEEECCC
Confidence                               88999986

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=98.50  E-value=1.9e-08  Score=73.79  Aligned_cols=63  Identities=14%  Similarity=0.211  Sum_probs=33.2

Q ss_pred             eccCCCcceeeeeccccCc--CC-----------------------------CCCC--CccceEEEEEecCcEEEEEEee
Q psy2967          21 MRKITKGNVTIWPVPLSGQ--FS-----------------------------QDMI--PTVGFNMRKITKGNVTIKVWDI   67 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~--~~-----------------------------~~~~--~t~~~~~~~~~~~~~~~~i~D~   67 (101)
                      +|.+++|||||+++++...  +.                             .+..  .|+...+..+...+..+.+|||
T Consensus       183 iG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~~i~iiDT  262 (592)
T 3mca_A          183 TGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDA  262 (592)
T ss_dssp             ECCSSSTHHHHHHHHHHHHHCC------------------------------------------------------CCEE
T ss_pred             EcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCeEEEEEEC
Confidence            5999999999999995310  00                             0011  1222223335556688999999


Q ss_pred             CCCCccce------------EEEEECCC
Q psy2967          68 GGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        68 ~G~~~~~~------------i~v~d~~~   83 (101)
                      +|+++|..            |+|+|.++
T Consensus       263 PGh~~f~~~~~~~~~~aD~alLVVDa~~  290 (592)
T 3mca_A          263 PGHRDFISGMIAGASSADFAVLVVDSSQ  290 (592)
T ss_dssp             ESSSEEEEECCC-------CCSEEEEEE
T ss_pred             CChHHHHHHHHHHHhhCCEEEEEEECCC
Confidence            99998876            88999875

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.49  E-value=2.2e-07  Score=68.94  Aligned_cols=69  Identities=16%  Similarity=0.107  Sum_probs=48.2

Q ss_pred             eccCCCcceeeeeccccCcCC-------------CCC-------CCccceEEEEEecCcEEEEEEeeCCCCccce-----
Q psy2967          21 MRKITKGNVTIWPVPLSGQFS-------------QDM-------IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS-----   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~-------------~~~-------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----   75 (101)
                      +|..|+|||||++++......             .++       ..|+......+..+++.+++|||+|+++|..     
T Consensus        15 iG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~~~~~~~   94 (665)
T 2dy1_A           15 VGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGA   94 (665)
T ss_dssp             EESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHHHHHH
T ss_pred             ECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchHHHHHHH
Confidence            599999999999999843221             111       1123333344667789999999999998765     


Q ss_pred             -------EEEEECCChhhHHH
Q psy2967          76 -------IYMVDAADTDKLEA   89 (101)
Q Consensus        76 -------i~v~d~~~~~sf~~   89 (101)
                             ++|+|.++....+.
T Consensus        95 l~~ad~~ilVvD~~~g~~~qt  115 (665)
T 2dy1_A           95 LEAADAALVAVSAEAGVQVGT  115 (665)
T ss_dssp             HHHCSEEEEEEETTTCSCHHH
T ss_pred             HhhcCcEEEEEcCCcccchhH
Confidence                   89999887655443

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.49  E-value=1.1e-07  Score=65.46  Aligned_cols=28  Identities=11%  Similarity=0.306  Sum_probs=22.8

Q ss_pred             ccceeeeEeccCCCcceeeeeccccCcCC
Q psy2967          13 MIPTVGFNMRKITKGNVTIWPVPLSGQFS   41 (101)
Q Consensus        13 ~~~~~g~~vG~~~vGKtsl~~~~~~~~~~   41 (101)
                      .+|.+.+ +|++|||||||++++.+.++.
T Consensus        33 ~lp~I~v-vG~~~sGKSSLln~l~g~~~l   60 (360)
T 3t34_A           33 SLPAIAV-VGGQSSGKSSVLESIVGKDFL   60 (360)
T ss_dssp             CCCEEEE-ECBTTSSHHHHHHHHHTSCCS
T ss_pred             cCCEEEE-ECCCCCcHHHHHHHHhCCCcC
Confidence            4665553 699999999999999998763

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.49  E-value=2.1e-07  Score=65.72  Aligned_cols=78  Identities=15%  Similarity=0.152  Sum_probs=51.9

Q ss_pred             eccCCCcceeeeeccccCcCC-CCCC-CccceEEEEEecCc-EEEEEEeeCCCCcc------------c----e---EEE
Q psy2967          21 MRKITKGNVTIWPVPLSGQFS-QDMI-PTVGFNMRKITKGN-VTIKVWDIGGQPRF------------R----S---IYM   78 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~-~~~~-~t~~~~~~~~~~~~-~~~~i~D~~G~~~~------------~----~---i~v   78 (101)
                      +|.+|||||||++.+...... ..+. .|...+...+...+ ..+.+||++|....            +    .   +.+
T Consensus       163 VG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~v  242 (416)
T 1udx_A          163 VGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYV  242 (416)
T ss_dssp             ECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEE
T ss_pred             ECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEE
Confidence            599999999999999876321 1121 22333333344443 78899999997321            0    0   889


Q ss_pred             EECCChhhHHHHHHHHHHHHH
Q psy2967          79 VDAADTDKLEASRNELHALIE   99 (101)
Q Consensus        79 ~d~~~~~sf~~~~~~~~~i~~   99 (101)
                      +|++ +.+++++..|.+++..
T Consensus       243 vDls-~~~~~~ls~g~~el~~  262 (416)
T 1udx_A          243 LDAA-DEPLKTLETLRKEVGA  262 (416)
T ss_dssp             EETT-SCHHHHHHHHHHHHHH
T ss_pred             eCCc-cCCHHHHHHHHHHHHH
Confidence            9998 7778888877777653

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=98.47  E-value=3e-07  Score=64.24  Aligned_cols=75  Identities=15%  Similarity=0.134  Sum_probs=52.8

Q ss_pred             ccccceeeeEeccCCCcceeeeeccccCcCC-CCC-CCccceEEEEEecCcEEEEEEeeCCCCccce-------------
Q psy2967          11 QDMIPTVGFNMRKITKGNVTIWPVPLSGQFS-QDM-IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS-------------   75 (101)
Q Consensus        11 ~~~~~~~g~~vG~~~vGKtsl~~~~~~~~~~-~~~-~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------------   75 (101)
                      +.-.+.+++ ||.||||||||++++.+.... .+| ..|+......+...+..+++.|++|--+-..             
T Consensus        69 k~g~a~V~i-vG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i  147 (376)
T 4a9a_A           69 RTGVASVGF-VGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVA  147 (376)
T ss_dssp             BCSSEEEEE-ECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred             ecCCCeEEE-ECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHH
Confidence            334566665 699999999999999975421 233 3455565566778889999999999643221             


Q ss_pred             ------EEEEECCChhh
Q psy2967          76 ------IYMVDAADTDK   86 (101)
Q Consensus        76 ------i~v~d~~~~~s   86 (101)
                            ++|+|.+++..
T Consensus       148 ~~ad~il~vvD~~~p~~  164 (376)
T 4a9a_A          148 RTCNLLFIILDVNKPLH  164 (376)
T ss_dssp             HHCSEEEEEEETTSHHH
T ss_pred             HhcCccccccccCccHH
Confidence                  77899998743

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=98.35  E-value=2.2e-07  Score=62.45  Aligned_cols=26  Identities=12%  Similarity=0.319  Sum_probs=21.3

Q ss_pred             cceeeeEeccCCCcceeeeeccccCcC
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLSGQF   40 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~   40 (101)
                      .|.+.+ +|.+|||||||++++++.++
T Consensus        24 ~~~I~v-vG~~~~GKSTlln~l~g~~~   49 (315)
T 1jwy_B           24 LPQIVV-VGSQSSGKSSVLENIVGRDF   49 (315)
T ss_dssp             CCEEEE-EECSSSSHHHHHHHHHTSCC
T ss_pred             CCeEEE-EcCCCCCHHHHHHHHHCCCc
Confidence            455543 69999999999999998876

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=98.33  E-value=9.2e-08  Score=74.72  Aligned_cols=66  Identities=14%  Similarity=0.132  Sum_probs=43.2

Q ss_pred             eccCCCcceeeeeccccC-------cCCC-------CCCCccceEE----EEEecCcEEEEEEeeCCCCccce-------
Q psy2967          21 MRKITKGNVTIWPVPLSG-------QFSQ-------DMIPTVGFNM----RKITKGNVTIKVWDIGGQPRFRS-------   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~-------~~~~-------~~~~t~~~~~----~~~~~~~~~~~i~D~~G~~~~~~-------   75 (101)
                      +|.+++|||||++++...       .+..       ..+.+.|..+    ..+...+..+.+|||+|+++|..       
T Consensus       302 IGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~~mi~gas  381 (1289)
T 3avx_A          302 IGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAA  381 (1289)
T ss_dssp             EESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHHHHHHHTSC
T ss_pred             EcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHHHHHHHHh
Confidence            599999999999999863       1110       1123334332    23566778999999999998765       


Q ss_pred             -----EEEEECCChhh
Q psy2967          76 -----IYMVDAADTDK   86 (101)
Q Consensus        76 -----i~v~d~~~~~s   86 (101)
                           |+|+|.++...
T Consensus       382 ~AD~aILVVDAtdGv~  397 (1289)
T 3avx_A          382 QMDGAILVVAATDGPM  397 (1289)
T ss_dssp             CCSEEEEEEETTTCSC
T ss_pred             hCCEEEEEEcCCccCc
Confidence                 99999988643

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=98.30  E-value=7.2e-07  Score=61.37  Aligned_cols=27  Identities=11%  Similarity=0.265  Sum_probs=21.9

Q ss_pred             cceeeeEeccCCCcceeeeeccccCcCC
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLSGQFS   41 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~~   41 (101)
                      .|.+. .+|+++||||||++++++.++.
T Consensus        31 ~~~I~-vvG~~~~GKSSLln~L~g~~~~   57 (353)
T 2x2e_A           31 LPQIA-VVGGQSAGKSSVLENFVGRDFL   57 (353)
T ss_dssp             CCEEE-EECBTTSSHHHHHHTTTTSCCS
T ss_pred             CCeEE-EECCCCCCHHHHHHHHhCCCcC
Confidence            44444 3699999999999999988774

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=98.25  E-value=4.6e-07  Score=67.53  Aligned_cols=37  Identities=16%  Similarity=0.175  Sum_probs=26.8

Q ss_pred             EEEEEEeeCCCCccce---------------EEEEECCChhhHHHHHHHHHH
Q psy2967          60 VTIKVWDIGGQPRFRS---------------IYMVDAADTDKLEASRNELHA   96 (101)
Q Consensus        60 ~~~~i~D~~G~~~~~~---------------i~v~d~~~~~sf~~~~~~~~~   96 (101)
                      ..+.+|||+|......               |+|+|.++..+..+...|...
T Consensus       174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~  225 (695)
T 2j69_A          174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENY  225 (695)
T ss_dssp             TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHH
T ss_pred             CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHH
Confidence            3589999999543211               889999998888777666443

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.15  E-value=2.3e-06  Score=60.48  Aligned_cols=54  Identities=15%  Similarity=0.133  Sum_probs=30.9

Q ss_pred             eEeccCCCcceeeeeccccCcCCC-C-------CCCccceEEEE--Ee--cCcEEEEEEeeCCCCc
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQ-D-------MIPTVGFNMRK--IT--KGNVTIKVWDIGGQPR   72 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~-~-------~~~t~~~~~~~--~~--~~~~~~~i~D~~G~~~   72 (101)
                      ..+|++|||||||++.+.+..+.. .       ..+|++.....  ++  .....+.+||++|...
T Consensus        35 ~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~  100 (418)
T 2qag_C           35 MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGD  100 (418)
T ss_dssp             EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC----
T ss_pred             EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhh
Confidence            346999999999999999876531 1       12344433222  12  2235899999999865

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.02  E-value=1e-06  Score=59.63  Aligned_cols=52  Identities=15%  Similarity=0.149  Sum_probs=26.2

Q ss_pred             eEeccCCCcceeeeeccccC-cCCCCC--------CCccceEEEE--E--ecCcEEEEEEeeCCC
Q psy2967          19 FNMRKITKGNVTIWPVPLSG-QFSQDM--------IPTVGFNMRK--I--TKGNVTIKVWDIGGQ   70 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~-~~~~~~--------~~t~~~~~~~--~--~~~~~~~~i~D~~G~   70 (101)
                      ..+|++|||||||++++... .++...        .+|++.....  +  ......+.+||++|+
T Consensus        22 ~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~   86 (301)
T 2qnr_A           22 MVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGY   86 (301)
T ss_dssp             EEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC--
T ss_pred             EEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhh
Confidence            34699999999999997654 444332        2333322211  2  233578999999998

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=97.98  E-value=3.9e-06  Score=58.89  Aligned_cols=20  Identities=10%  Similarity=0.089  Sum_probs=17.7

Q ss_pred             eccCCCcceeeeeccccCcC
Q psy2967          21 MRKITKGNVTIWPVPLSGQF   40 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~   40 (101)
                      +|.+|||||||++.+.+...
T Consensus        26 VG~pnaGKSTL~n~Ltg~~~   45 (392)
T 1ni3_A           26 VGMPNVGKSTFFRAITKSVL   45 (392)
T ss_dssp             EECSSSSHHHHHHHHHHSTT
T ss_pred             ECCCCCCHHHHHHHHHCCCc
Confidence            69999999999999998654

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=97.90  E-value=5.3e-07  Score=60.01  Aligned_cols=50  Identities=16%  Similarity=0.078  Sum_probs=29.3

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEE--EEEecCcEEEEEEeeCCCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM--RKITKGNVTIKVWDIGGQP   71 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G~~   71 (101)
                      .+|.+|||||||++++.+.... .+.++.|...  ..+.. +..+.+|||+|..
T Consensus       104 ~vG~~~vGKSslin~l~~~~~~-~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~  155 (262)
T 3cnl_A          104 IVGVPNTGKSTIINKLKGKRAS-SVGAQPGITKGIQWFSL-ENGVKILDTPGIL  155 (262)
T ss_dssp             EEESTTSSHHHHHHHHHTTCC-----------CCSCEEEC-TTSCEEESSCEEC
T ss_pred             EeCCCCCCHHHHHHHHhccccc-ccCCCCCCccceEEEEe-CCCEEEEECCCcc
Confidence            4699999999999999976543 2333334322  11221 2368899999965

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=97.69  E-value=8e-06  Score=54.82  Aligned_cols=51  Identities=10%  Similarity=0.057  Sum_probs=29.1

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEE--EEEecCcEEEEEEeeCCCC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNM--RKITKGNVTIKVWDIGGQP   71 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G~~   71 (101)
                      ..+|.+|||||||++++.+.... ...++.|...  ..+.. +..+.+|||+|-.
T Consensus       124 ~~vG~~nvGKSsliN~l~~~~~~-~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~  176 (282)
T 1puj_A          124 LIIGIPNVGKSTLINRLAKKNIA-KTGDRPGITTSQQWVKV-GKELELLDTPGIL  176 (282)
T ss_dssp             EEEESTTSSHHHHHHHHHTSCCC-------------CCEEE-TTTEEEEECCCCC
T ss_pred             EEEecCCCchHHHHHHHhcCcee-ecCCCCCeeeeeEEEEe-CCCEEEEECcCcC
Confidence            44699999999999999976532 1222222111  11111 2257899999964

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=97.42  E-value=5.5e-05  Score=55.64  Aligned_cols=53  Identities=13%  Similarity=0.045  Sum_probs=34.6

Q ss_pred             EeccCCCcceeeeeccccCcCCCCC-----CCccceEEEEE---ecCcEEEEEEeeCCCCc
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDM-----IPTVGFNMRKI---TKGNVTIKVWDIGGQPR   72 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~-----~~t~~~~~~~~---~~~~~~~~i~D~~G~~~   72 (101)
                      .+|.+|||||||++++.+....-..     ..|.+......   ...+..+.++||+|-..
T Consensus        43 ivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           43 IVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             EEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             EECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            3699999999999999976532122     23334322211   23567899999999753

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.42  E-value=3.2e-05  Score=49.18  Aligned_cols=24  Identities=17%  Similarity=0.166  Sum_probs=18.6

Q ss_pred             cceeeeEeccCCCcceeeeeccccC
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~~   38 (101)
                      ++.+. .+|.+|||||||++++...
T Consensus        30 ~~~i~-i~G~~g~GKTTl~~~l~~~   53 (221)
T 2wsm_A           30 TVAVN-IMGAIGSGKTLLIERTIER   53 (221)
T ss_dssp             CEEEE-EEECTTSCHHHHHHHHHHH
T ss_pred             ceEEE-EEcCCCCCHHHHHHHHHHH
Confidence            44444 3599999999999998865

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.28  E-value=4.1e-06  Score=59.65  Aligned_cols=83  Identities=17%  Similarity=0.090  Sum_probs=50.7

Q ss_pred             cceeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCcc--ce------------
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRF--RS------------   75 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~--~~------------   75 (101)
                      .|.+-+.+|.+|+||||+.+++...-.. ...+|.+++...    ..+......+||..|++.+  +.            
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~  116 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK  116 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3445556799999999999998864321 223444443221    1122345578998887322  11            


Q ss_pred             --------EEEEECCChhhHHHHHHHHHHHH
Q psy2967          76 --------IYMVDAADTDKLEASRNELHALI   98 (101)
Q Consensus        76 --------i~v~d~~~~~sf~~~~~~~~~i~   98 (101)
                              ++|+|.++. +++....|+..+.
T Consensus       117 ~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~  146 (469)
T 1bif_A          117 FLSEEGGHVAVFDATNT-TRERRAMIFNFGE  146 (469)
T ss_dssp             HHHTTCCSEEEEESCCC-SHHHHHHHHHHHH
T ss_pred             HHHhCCCCEEEEeCCCC-CHHHHHHHHHHHH
Confidence                    899999988 5555556655443

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.21  E-value=3.7e-05  Score=49.05  Aligned_cols=30  Identities=13%  Similarity=0.083  Sum_probs=23.6

Q ss_pred             eccCCCcceeeeeccccCcCCCCCCCccce
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGF   50 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~   50 (101)
                      +|.+|||||||++++....+...+.++++.
T Consensus        44 vG~~gvGKTtl~~~l~~~~~~~~~~~~i~~   73 (226)
T 2hf9_A           44 MGAIGSGKTLLIEKLIDNLKDKYKIACIAG   73 (226)
T ss_dssp             EESTTSSHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred             EcCCCCCHHHHHHHHHHHhccCCeEEEEEC
Confidence            599999999999999987666555555553

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=97.09  E-value=0.0005  Score=50.05  Aligned_cols=78  Identities=17%  Similarity=0.204  Sum_probs=49.0

Q ss_pred             eeeeE-eccCCCcceeeeecccc--Cc----------------CCC------CCCCccceEEEEEecCcEEEEEEeeCCC
Q psy2967          16 TVGFN-MRKITKGNVTIWPVPLS--GQ----------------FSQ------DMIPTVGFNMRKITKGNVTIKVWDIGGQ   70 (101)
Q Consensus        16 ~~g~~-vG~~~vGKtsl~~~~~~--~~----------------~~~------~~~~t~~~~~~~~~~~~~~~~i~D~~G~   70 (101)
                      +..+. +|-.++|||||+.++..  +.                ..+      +.--|+......+.+++..+++.||+|+
T Consensus        31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH  110 (548)
T 3vqt_A           31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH  110 (548)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred             cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence            34444 48899999999998752  10                000      0011122222346778999999999999


Q ss_pred             Cccce------------EEEEECCChhhHHHHHHH
Q psy2967          71 PRFRS------------IYMVDAADTDKLEASRNE   93 (101)
Q Consensus        71 ~~~~~------------i~v~d~~~~~sf~~~~~~   93 (101)
                      ..|..            |+|+|..+--.-+....|
T Consensus       111 vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~  145 (548)
T 3vqt_A          111 QDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM  145 (548)
T ss_dssp             GGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH
Confidence            98876            888888765444444444

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=96.72  E-value=0.0005  Score=47.26  Aligned_cols=23  Identities=17%  Similarity=-0.026  Sum_probs=18.1

Q ss_pred             cceeeeEeccCCCcceeeeecccc
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      .+++++ +|.+|||||||++++..
T Consensus        79 ~~~I~i-~G~~G~GKSTl~~~L~~  101 (355)
T 3p32_A           79 AHRVGI-TGVPGVGKSTAIEALGM  101 (355)
T ss_dssp             SEEEEE-ECCTTSSHHHHHHHHHH
T ss_pred             ceEEEE-ECCCCCCHHHHHHHHHH
Confidence            445554 69999999999999863

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=96.66  E-value=0.0007  Score=46.34  Aligned_cols=22  Identities=14%  Similarity=0.009  Sum_probs=17.6

Q ss_pred             cceeeeEeccCCCcceeeeeccc
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPL   36 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~   36 (101)
                      .+++++ +|.+|+|||||++.+.
T Consensus        56 ~~~i~i-~G~~g~GKSTl~~~l~   77 (341)
T 2p67_A           56 TLRLGV-TGTPGAGKSTFLEAFG   77 (341)
T ss_dssp             SEEEEE-EECTTSCHHHHHHHHH
T ss_pred             CEEEEE-EcCCCCCHHHHHHHHH
Confidence            445554 6999999999999985

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=96.56  E-value=0.00038  Score=48.26  Aligned_cols=19  Identities=11%  Similarity=-0.022  Sum_probs=16.8

Q ss_pred             EeccCCCcceeeeeccccC
Q psy2967          20 NMRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~   38 (101)
                      .+|.+|+|||||++.+.+.
T Consensus       167 ~vG~~nvGKStliN~L~~~  185 (369)
T 3ec1_A          167 VVGCTNVGKSTFINRIIEE  185 (369)
T ss_dssp             EECCTTSSHHHHHHHHHHH
T ss_pred             EEcCCCCchHHHHHHHHhh
Confidence            4699999999999999865

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=96.51  E-value=0.00044  Score=47.96  Aligned_cols=19  Identities=11%  Similarity=-0.020  Sum_probs=16.7

Q ss_pred             EeccCCCcceeeeeccccC
Q psy2967          20 NMRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~   38 (101)
                      .+|.+|+|||||++.+.+.
T Consensus       165 ~vG~~nvGKStliN~L~~~  183 (368)
T 3h2y_A          165 VVGCTNVGKSTFINRMIKE  183 (368)
T ss_dssp             EEEBTTSSHHHHHHHHHHH
T ss_pred             EecCCCCChhHHHHHHHhh
Confidence            4689999999999999865

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=96.42  E-value=0.006  Score=45.60  Aligned_cols=80  Identities=11%  Similarity=0.079  Sum_probs=45.1

Q ss_pred             eeeeE-eccCCCcceeeeeccccC--------cCCC--CCC------CccceEEE----EE-------ecCcEEEEEEee
Q psy2967          16 TVGFN-MRKITKGNVTIWPVPLSG--------QFSQ--DMI------PTVGFNMR----KI-------TKGNVTIKVWDI   67 (101)
Q Consensus        16 ~~g~~-vG~~~vGKtsl~~~~~~~--------~~~~--~~~------~t~~~~~~----~~-------~~~~~~~~i~D~   67 (101)
                      +..++ +|-..+|||||+.+++..        +...  .+.      --.|+.++    .+       +.+++.+++.||
T Consensus        13 IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDT   92 (709)
T 4fn5_A           13 YRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDT   92 (709)
T ss_dssp             EEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECC
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeC
Confidence            34444 488999999999887631        1110  011      01112221    11       124689999999


Q ss_pred             CCCCccce------------EEEEECCChhhHHHHHHHHH
Q psy2967          68 GGQPRFRS------------IYMVDAADTDKLEASRNELH   95 (101)
Q Consensus        68 ~G~~~~~~------------i~v~d~~~~~sf~~~~~~~~   95 (101)
                      +|+..|..            |+|+|...--.-+.-.-|..
T Consensus        93 PGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~  132 (709)
T 4fn5_A           93 PGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQ  132 (709)
T ss_dssp             CSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHH
Confidence            99998876            88899876444333333433

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=96.33  E-value=0.008  Score=45.55  Aligned_cols=27  Identities=11%  Similarity=0.254  Sum_probs=22.0

Q ss_pred             ccceeeeEeccCCCcceeeeeccccCcC
Q psy2967          13 MIPTVGFNMRKITKGNVTIWPVPLSGQF   40 (101)
Q Consensus        13 ~~~~~g~~vG~~~vGKtsl~~~~~~~~~   40 (101)
                      ..|.+. .+|..++|||||++.+++.++
T Consensus        50 ~lp~I~-vvG~~saGKSSllnaL~g~~~   76 (772)
T 3zvr_A           50 DLPQIA-VVGGQSAGKSSVLENFVGRDF   76 (772)
T ss_dssp             CCSEEE-EEECTTTCHHHHHHHHHSSCC
T ss_pred             CCCEEE-EECCCCCcHHHHHHHHhCCCc
Confidence            356555 369999999999999998776

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=96.21  E-value=0.00058  Score=46.95  Aligned_cols=23  Identities=17%  Similarity=-0.019  Sum_probs=19.0

Q ss_pred             cceeeeEeccCCCcceeeeecccc
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      .+++++ +|.+|||||||++++..
T Consensus        74 ~~~v~l-vG~pgaGKSTLln~L~~   96 (349)
T 2www_A           74 AFRVGL-SGPPGAGKSTFIEYFGK   96 (349)
T ss_dssp             CEEEEE-ECCTTSSHHHHHHHHHH
T ss_pred             ceEEEE-EcCCCCCHHHHHHHHHH
Confidence            555554 69999999999999985

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=96.10  E-value=0.0026  Score=45.37  Aligned_cols=17  Identities=18%  Similarity=0.172  Sum_probs=15.4

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|.+++|||+|++++.+
T Consensus        73 ~G~~~~GKStLLN~llg   89 (447)
T 3q5d_A           73 AGAFRKGKSFLMDFMLR   89 (447)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHhh
Confidence            49999999999999974

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=95.92  E-value=0.0013  Score=40.09  Aligned_cols=23  Identities=9%  Similarity=-0.048  Sum_probs=18.3

Q ss_pred             ceeeeEeccCCCcceeeeecccc
Q psy2967          15 PTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        15 ~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      |.+-+.+|.+|+||||+.+.+..
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEecCCCCCHHHHHHHHHh
Confidence            44445569999999999998875

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=95.82  E-value=0.00074  Score=41.90  Aligned_cols=17  Identities=12%  Similarity=0.053  Sum_probs=15.2

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|++|||||||++.+..
T Consensus        11 ~GpsGsGKSTL~~~L~~   27 (180)
T 1kgd_A           11 LGAHGVGRRHIKNTLIT   27 (180)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHh
Confidence            59999999999999875

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=95.81  E-value=0.0019  Score=47.81  Aligned_cols=64  Identities=20%  Similarity=0.332  Sum_probs=42.4

Q ss_pred             eccCCCcceeeeecccc--CcCCC-----------CCC-------CccceEEEEEecCcEEEEEEeeCCCCccce-----
Q psy2967          21 MRKITKGNVTIWPVPLS--GQFSQ-----------DMI-------PTVGFNMRKITKGNVTIKVWDIGGQPRFRS-----   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~--~~~~~-----------~~~-------~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----   75 (101)
                      +|-..+|||||+.++..  +....           ++.       -|+......+.+++..+++.||+|+..|..     
T Consensus         8 iaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~Ev~ra   87 (638)
T 3j25_A            8 LAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRS   87 (638)
T ss_dssp             ECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            47789999999988752  21111           010       111111123567889999999999998877     


Q ss_pred             -------EEEEECCCh
Q psy2967          76 -------IYMVDAADT   84 (101)
Q Consensus        76 -------i~v~d~~~~   84 (101)
                             |+|+|..+-
T Consensus        88 L~~~DgavlVVDa~~G  103 (638)
T 3j25_A           88 LSVLDGAILLISAKDG  103 (638)
T ss_dssp             HTTCSEEECCEESSCT
T ss_pred             HHHhCEEEEEEeCCCC
Confidence                   889998764

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=95.74  E-value=0.0015  Score=40.85  Aligned_cols=24  Identities=25%  Similarity=0.375  Sum_probs=19.1

Q ss_pred             ccceeeeEeccCCCcceeeeecccc
Q psy2967          13 MIPTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        13 ~~~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      ++|++.+ +|.+|+|||||++++..
T Consensus         5 ~~~~i~i-~G~sGsGKTTl~~~l~~   28 (174)
T 1np6_A            5 MIPLLAF-AAWSGTGKTTLLKKLIP   28 (174)
T ss_dssp             CCCEEEE-ECCTTSCHHHHHHHHHH
T ss_pred             cceEEEE-EeCCCCCHHHHHHHHHH
Confidence            4566654 69999999999988774

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=95.64  E-value=0.0012  Score=40.74  Aligned_cols=15  Identities=13%  Similarity=0.040  Sum_probs=12.9

Q ss_pred             eccCCCcceeeeecc
Q psy2967          21 MRKITKGNVTIWPVP   35 (101)
Q Consensus        21 vG~~~vGKtsl~~~~   35 (101)
                      +|++|||||||++.+
T Consensus        15 ~G~nGsGKSTl~~~~   29 (171)
T 4gp7_A           15 IGSSGSGKSTFAKKH   29 (171)
T ss_dssp             ECCTTSCHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHH
Confidence            588899999999953

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=95.56  E-value=0.0098  Score=42.99  Aligned_cols=17  Identities=12%  Similarity=-0.076  Sum_probs=15.1

Q ss_pred             EeccCCCcceeeeeccc
Q psy2967          20 NMRKITKGNVTIWPVPL   36 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~   36 (101)
                      .+|.+||||||++.++.
T Consensus       106 ivG~~GvGKTTl~~kLA  122 (504)
T 2j37_W          106 FVGLQGSGKTTTCSKLA  122 (504)
T ss_dssp             EECSTTSSHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHH
Confidence            35999999999999987

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=95.55  E-value=0.002  Score=39.36  Aligned_cols=22  Identities=14%  Similarity=-0.088  Sum_probs=16.8

Q ss_pred             eeeeEeccCCCcceeeeecccc
Q psy2967          16 TVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        16 ~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      .+-+.+|.+|+||||+.+.+..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3344469999999999887764

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=95.49  E-value=0.0012  Score=41.70  Aligned_cols=17  Identities=12%  Similarity=0.048  Sum_probs=14.9

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|++|+|||||++.+..
T Consensus        10 vGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A           10 SGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHh
Confidence            58899999999998764

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=95.44  E-value=0.0014  Score=40.53  Aligned_cols=18  Identities=17%  Similarity=-0.062  Sum_probs=15.3

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|++|+|||||++.+...
T Consensus        15 ~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           15 SGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EECTTSCHHHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHHHhc
Confidence            588899999999988653

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=95.36  E-value=0.0014  Score=40.96  Aligned_cols=17  Identities=12%  Similarity=0.030  Sum_probs=14.7

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|++|+|||||++.+.+
T Consensus         6 ~G~nGsGKTTLl~~l~g   22 (178)
T 1ye8_A            6 TGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            58999999999987764

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=95.35  E-value=0.0014  Score=40.94  Aligned_cols=17  Identities=6%  Similarity=0.042  Sum_probs=15.0

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|++|||||||++.+.+
T Consensus        13 ~Gp~GsGKSTl~~~L~~   29 (205)
T 3tr0_A           13 SAPSGAGKTSLVRALVK   29 (205)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHHh
Confidence            59999999999988775

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=95.23  E-value=0.0016  Score=43.26  Aligned_cols=18  Identities=11%  Similarity=0.104  Sum_probs=15.9

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++.+.+-
T Consensus         8 vG~nGaGKSTLln~L~g~   25 (270)
T 3sop_A            8 VGQSGLGKSTLVNTLFKS   25 (270)
T ss_dssp             EESSSSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            599999999999998863

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=95.16  E-value=0.0018  Score=41.01  Aligned_cols=17  Identities=12%  Similarity=-0.031  Sum_probs=14.8

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|+.|||||||++.+.+
T Consensus        26 ~GpnGsGKSTLl~~l~g   42 (207)
T 1znw_A           26 SGPSAVGKSTVVRCLRE   42 (207)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHh
Confidence            58999999999998764

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=95.12  E-value=0.0018  Score=41.73  Aligned_cols=18  Identities=11%  Similarity=0.069  Sum_probs=15.5

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|++|||||||++.+.+.
T Consensus        22 ~GpsGsGKSTLlk~L~g~   39 (219)
T 1s96_A           22 SAPSGAGKSSLIQALLKT   39 (219)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhcc
Confidence            599999999999987753

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=95.09  E-value=0.0019  Score=41.38  Aligned_cols=17  Identities=18%  Similarity=0.018  Sum_probs=14.9

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|++|||||||++.+.+
T Consensus        29 vGpsGsGKSTLl~~L~g   45 (218)
T 1z6g_A           29 CGPSGVGKGTLIKKLLN   45 (218)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHh
Confidence            58999999999998765

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=95.08  E-value=0.0014  Score=40.85  Aligned_cols=22  Identities=9%  Similarity=0.140  Sum_probs=17.0

Q ss_pred             ceeeeEeccCCCcceeeeecccc
Q psy2967          15 PTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        15 ~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      +++++ +|++|+|||||++.+..
T Consensus         3 ~~v~I-vG~SGsGKSTL~~~L~~   24 (171)
T 2f1r_A            3 LILSI-VGTSDSGKTTLITRMMP   24 (171)
T ss_dssp             CEEEE-EESCHHHHHHHHHHHHH
T ss_pred             eEEEE-ECCCCCCHHHHHHHHHH
Confidence            44443 68999999999988774

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=95.07  E-value=0.0033  Score=39.19  Aligned_cols=23  Identities=9%  Similarity=0.027  Sum_probs=18.0

Q ss_pred             cceeeeEeccCCCcceeeeecccc
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      ++++++ +|.+|+|||||+.++..
T Consensus         4 ~~~i~i-~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            4 MNVWQV-VGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CCEEEE-ECCTTSSHHHHHHHHHH
T ss_pred             CEEEEE-ECCCCCCHHHHHHHHHH
Confidence            555554 58999999999988764

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=95.02  E-value=0.0022  Score=40.60  Aligned_cols=16  Identities=13%  Similarity=-0.085  Sum_probs=13.6

Q ss_pred             eccCCCcceeeeeccc
Q psy2967          21 MRKITKGNVTIWPVPL   36 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~   36 (101)
                      +|++|+|||||++.+.
T Consensus        28 ~G~sGsGKSTl~~~l~   43 (208)
T 3c8u_A           28 SGAPGSGKSTLSNPLA   43 (208)
T ss_dssp             ECCTTSCTHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999997654

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=94.96  E-value=0.0061  Score=40.72  Aligned_cols=25  Identities=12%  Similarity=0.053  Sum_probs=19.8

Q ss_pred             ccceeeeEeccCCCcceeeeecccc
Q psy2967          13 MIPTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        13 ~~~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      .-|.+-+.+|++||||||+.+++..
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3466666679999999999988763

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=94.94  E-value=0.0029  Score=39.64  Aligned_cols=19  Identities=11%  Similarity=-0.003  Sum_probs=15.6

Q ss_pred             eEeccCCCcceeeeecccc
Q psy2967          19 FNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~   37 (101)
                      +-+|.+|+||||+.+.+..
T Consensus        22 ~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           22 VVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             EEECSTTSCHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            3469999999999988754

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=94.89  E-value=0.0033  Score=39.58  Aligned_cols=19  Identities=21%  Similarity=0.011  Sum_probs=15.9

Q ss_pred             eEeccCCCcceeeeecccc
Q psy2967          19 FNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~   37 (101)
                      +.+|++||||||+.+++..
T Consensus        16 ~l~G~sGsGKsTl~~~L~~   34 (204)
T 2qor_A           16 VVCGPSGVGKGTLIKKVLS   34 (204)
T ss_dssp             EEECCTTSCHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            3469999999999998864

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=94.87  E-value=0.0048  Score=38.60  Aligned_cols=27  Identities=7%  Similarity=-0.273  Sum_probs=19.9

Q ss_pred             ccccceeeeEeccCCCcceeeeecccc
Q psy2967          11 QDMIPTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        11 ~~~~~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      ....|++-+-+|.+|+||||+.+.+..
T Consensus        16 ~~~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           16 PRGSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            344555555569999999999888764

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=94.80  E-value=0.005  Score=37.96  Aligned_cols=23  Identities=13%  Similarity=0.128  Sum_probs=17.3

Q ss_pred             ceeeeEeccCCCcceeeeecccc
Q psy2967          15 PTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        15 ~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      |.+-+.+|.+|+||||+.+.+..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34444569999999999888753

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=94.80  E-value=0.0034  Score=39.63  Aligned_cols=17  Identities=12%  Similarity=0.075  Sum_probs=15.3

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|++|||||||++++..
T Consensus         7 ~GPSG~GK~Tl~~~L~~   23 (186)
T 1ex7_A            7 SGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999999874

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=94.79  E-value=0.0038  Score=42.36  Aligned_cols=17  Identities=18%  Similarity=0.096  Sum_probs=14.5

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|++|+|||||++.+.+
T Consensus        96 ~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           96 AGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCCchHHHHHHHHHh
Confidence            59999999999987654

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=94.75  E-value=0.0033  Score=46.25  Aligned_cols=26  Identities=8%  Similarity=0.234  Sum_probs=20.7

Q ss_pred             ccceeeeEeccCCCcceeeeeccccCc
Q psy2967          13 MIPTVGFNMRKITKGNVTIWPVPLSGQ   39 (101)
Q Consensus        13 ~~~~~g~~vG~~~vGKtsl~~~~~~~~   39 (101)
                      .+|.+++ +|+.|||||||++.+.+-.
T Consensus        44 ~lp~iaI-vG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           44 ALPAIAV-IGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CCCCEEC-CCCTTSCHHHHHHHHHSCC
T ss_pred             cCCeEEE-ECCCCChHHHHHHHHhCCC
Confidence            3566654 6999999999999988653

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=94.75  E-value=0.0033  Score=40.87  Aligned_cols=18  Identities=17%  Similarity=0.030  Sum_probs=15.2

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|||||||++-+.+-
T Consensus        37 iG~nGsGKSTLl~~l~Gl   54 (235)
T 3tif_A           37 MGPSGSGKSTMLNIIGCL   54 (235)
T ss_dssp             ECSTTSSHHHHHHHHTTS
T ss_pred             ECCCCCcHHHHHHHHhcC
Confidence            388899999999988753

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=94.75  E-value=0.0044  Score=40.12  Aligned_cols=18  Identities=11%  Similarity=-0.042  Sum_probs=15.5

Q ss_pred             eEeccCCCcceeeeeccc
Q psy2967          19 FNMRKITKGNVTIWPVPL   36 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~   36 (101)
                      ..+|++||||||+++.+.
T Consensus        31 ~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           31 VILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             EEECCTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            346999999999999887

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=94.66  E-value=0.0052  Score=39.19  Aligned_cols=18  Identities=22%  Similarity=0.052  Sum_probs=15.6

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      -+|++|||||||++.+..
T Consensus        24 l~GPSGaGKsTL~~~L~~   41 (197)
T 3ney_A           24 LIGASGVGRSHIKNALLS   41 (197)
T ss_dssp             EECCTTSSHHHHHHHHHH
T ss_pred             EECcCCCCHHHHHHHHHh
Confidence            359999999999998874

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=94.66  E-value=0.004  Score=39.90  Aligned_cols=16  Identities=19%  Similarity=0.015  Sum_probs=10.9

Q ss_pred             eccCCCcceeeeeccc
Q psy2967          21 MRKITKGNVTIWPVPL   36 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~   36 (101)
                      +|+.|||||||++.+.
T Consensus        33 ~Gp~GsGKSTl~~~L~   48 (231)
T 3lnc_A           33 SSPSGCGKTTVANKLL   48 (231)
T ss_dssp             ECSCC----CHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999988

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=94.62  E-value=0.0037  Score=40.32  Aligned_cols=18  Identities=11%  Similarity=-0.069  Sum_probs=15.2

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        36 iG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           36 IGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             EECTTSCHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            388899999999988753

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=94.60  E-value=0.0051  Score=41.33  Aligned_cols=19  Identities=11%  Similarity=0.013  Sum_probs=16.5

Q ss_pred             eccCCCcceeeeeccccCc
Q psy2967          21 MRKITKGNVTIWPVPLSGQ   39 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~   39 (101)
                      +|++|||||||++.+.+..
T Consensus       175 ~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          175 AGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             ECSTTSSHHHHHHHHSTTC
T ss_pred             ECCCCCcHHHHHHHhcccc
Confidence            6999999999999998643

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=94.59  E-value=0.0052  Score=36.94  Aligned_cols=15  Identities=7%  Similarity=-0.086  Sum_probs=13.9

Q ss_pred             eccCCCcceeeeecc
Q psy2967          21 MRKITKGNVTIWPVP   35 (101)
Q Consensus        21 vG~~~vGKtsl~~~~   35 (101)
                      +|.+||||||+.+.+
T Consensus         7 ~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            7 TGMPGSGKSEFAKLL   21 (179)
T ss_dssp             ECCTTSCHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHH
Confidence            599999999999988

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=94.58  E-value=0.0046  Score=39.17  Aligned_cols=18  Identities=11%  Similarity=0.012  Sum_probs=15.7

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|++||||||+++.+...
T Consensus        14 ~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A           14 SGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             ECCTTSCHHHHHHHHHHS
T ss_pred             ECcCCCCHHHHHHHHHhh
Confidence            699999999999998754

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=94.57  E-value=0.0037  Score=43.36  Aligned_cols=19  Identities=16%  Similarity=0.087  Sum_probs=16.6

Q ss_pred             eccCCCcceeeeeccccCc
Q psy2967          21 MRKITKGNVTIWPVPLSGQ   39 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~   39 (101)
                      +|++|||||||++.+.+..
T Consensus       221 vG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          221 AGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             ECCTTSSHHHHHHHHHCCS
T ss_pred             ECCCCccHHHHHHHHhccc
Confidence            5999999999999998644

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=94.56  E-value=0.0031  Score=39.33  Aligned_cols=17  Identities=12%  Similarity=-0.046  Sum_probs=14.8

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|++||||||+++.+..
T Consensus        12 ~G~~GsGKSTl~~~L~~   28 (207)
T 2j41_A           12 SGPSGVGKGTVRKRIFE   28 (207)
T ss_dssp             ECSTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999988764

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=94.52  E-value=0.0038  Score=37.95  Aligned_cols=17  Identities=18%  Similarity=0.085  Sum_probs=14.7

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|.+|+||||+.+.+..
T Consensus        10 ~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A           10 VGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            58899999999988764

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=94.49  E-value=0.0067  Score=37.29  Aligned_cols=23  Identities=22%  Similarity=0.135  Sum_probs=16.8

Q ss_pred             ceeeeEeccCCCcceeeeecccc
Q psy2967          15 PTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        15 ~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      |.+-+-.|.+||||||+.+.+..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            33334469999999999887653

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=94.46  E-value=0.0086  Score=37.58  Aligned_cols=18  Identities=11%  Similarity=-0.079  Sum_probs=15.2

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      .+|.+|+||||+++.+..
T Consensus        26 i~G~~GsGKSTl~~~L~~   43 (207)
T 2qt1_A           26 ISGVTNSGKTTLAKNLQK   43 (207)
T ss_dssp             EEESTTSSHHHHHHHHHT
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            359999999999988765

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=94.43  E-value=0.0038  Score=39.46  Aligned_cols=17  Identities=6%  Similarity=0.057  Sum_probs=15.1

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|++|+|||||++.+..
T Consensus        31 ~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           31 FGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            48889999999999875

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=94.40  E-value=0.0061  Score=36.79  Aligned_cols=17  Identities=6%  Similarity=-0.384  Sum_probs=14.9

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|.+||||||+.+.+..
T Consensus         7 ~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            7 EGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             ECSSSSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999988764

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=94.40  E-value=0.0041  Score=41.89  Aligned_cols=16  Identities=13%  Similarity=-0.016  Sum_probs=14.9

Q ss_pred             eccCCCcceeeeeccc
Q psy2967          21 MRKITKGNVTIWPVPL   36 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~   36 (101)
                      +|++|||||||++.+.
T Consensus       171 ~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          171 AGPSGVGKSSILSRLT  186 (302)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999988

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=94.37  E-value=0.0036  Score=38.44  Aligned_cols=19  Identities=21%  Similarity=0.179  Sum_probs=15.8

Q ss_pred             eccCCCcceeeeeccccCc
Q psy2967          21 MRKITKGNVTIWPVPLSGQ   39 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~   39 (101)
                      +|+.|+|||||++.+.+..
T Consensus        39 ~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           39 NGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             ECSTTSSHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHhC
Confidence            4888999999999887643

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=94.34  E-value=0.0048  Score=40.79  Aligned_cols=18  Identities=11%  Similarity=-0.103  Sum_probs=15.4

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        38 iG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           38 IGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             ECCTTSSHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            388899999999988854

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=94.32  E-value=0.0056  Score=39.66  Aligned_cols=17  Identities=12%  Similarity=0.116  Sum_probs=14.8

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|+.|+|||||++.+.+
T Consensus        31 ~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           31 SGGTASGKSTVCEKIME   47 (245)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999988765

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=94.31  E-value=0.0071  Score=40.92  Aligned_cols=24  Identities=17%  Similarity=0.126  Sum_probs=18.9

Q ss_pred             cceeeeEeccCCCcceeeeeccccC
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+..+ +|..|+|||||++.+...
T Consensus         4 i~v~~i-~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            4 IAVTLL-TGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEE-EESSSSSCHHHHHHHHHS
T ss_pred             ccEEEE-EecCCCCHHHHHHHHHhh
Confidence            555554 588899999999998854

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=94.27  E-value=0.007  Score=37.14  Aligned_cols=19  Identities=11%  Similarity=-0.010  Sum_probs=15.1

Q ss_pred             eEeccCCCcceeeeecccc
Q psy2967          19 FNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~   37 (101)
                      +..|.+||||||+.+.+..
T Consensus         7 ~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            7 VVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             EEECCTTSCHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            3359999999999887654

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=94.23  E-value=0.0052  Score=40.01  Aligned_cols=18  Identities=11%  Similarity=0.257  Sum_probs=15.3

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        37 ~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           37 VGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             ECSTTSSHHHHHHHHTTC
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            388999999999988753

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=94.22  E-value=0.0048  Score=40.34  Aligned_cols=18  Identities=6%  Similarity=-0.012  Sum_probs=15.5

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        30 iG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           30 LGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             ECCTTSSHHHHHHHHHTS
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            588899999999988754

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=94.21  E-value=0.0053  Score=40.98  Aligned_cols=18  Identities=11%  Similarity=-0.051  Sum_probs=15.4

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        40 iGpnGsGKSTLl~~l~Gl   57 (275)
T 3gfo_A           40 LGGNGVGKSTLFQNFNGI   57 (275)
T ss_dssp             ECCTTSSHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHHcC
Confidence            388999999999988753

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=94.21  E-value=0.005  Score=37.31  Aligned_cols=19  Identities=11%  Similarity=-0.055  Sum_probs=15.8

Q ss_pred             eEeccCCCcceeeeecccc
Q psy2967          19 FNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~   37 (101)
                      +-.|++|+|||++++.+..
T Consensus        47 ll~G~~G~GKT~l~~~~~~   65 (195)
T 1jbk_A           47 VLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             EEECCTTSCHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            3459999999999988765

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=94.21  E-value=0.0035  Score=38.53  Aligned_cols=17  Identities=12%  Similarity=0.083  Sum_probs=14.8

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|++|+|||+|++.+..
T Consensus        44 ~G~~G~GKTtL~~~i~~   60 (180)
T 3ec2_A           44 VGSPGVGKTHLAVATLK   60 (180)
T ss_dssp             CCSSSSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999988764

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=94.18  E-value=0.0054  Score=40.66  Aligned_cols=18  Identities=11%  Similarity=0.027  Sum_probs=15.5

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        43 iG~nGsGKSTLl~~l~Gl   60 (266)
T 4g1u_C           43 IGPNGAGKSTLLRLLTGY   60 (266)
T ss_dssp             ECCTTSCHHHHHHHHTSS
T ss_pred             ECCCCCcHHHHHHHHhcC
Confidence            388899999999998854

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=94.18  E-value=0.0054  Score=40.35  Aligned_cols=18  Identities=17%  Similarity=0.017  Sum_probs=15.4

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        39 iG~nGsGKSTLlk~l~Gl   56 (257)
T 1g6h_A           39 IGPNGSGKSTLINVITGF   56 (257)
T ss_dssp             ECSTTSSHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            388899999999998754

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=94.13  E-value=0.002  Score=43.79  Aligned_cols=18  Identities=6%  Similarity=-0.010  Sum_probs=15.5

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|++|||||||++.+...
T Consensus       179 vG~sG~GKSTLln~L~g~  196 (307)
T 1t9h_A          179 AGQSGVGKSSLLNAISPE  196 (307)
T ss_dssp             EESHHHHHHHHHHHHCC-
T ss_pred             ECCCCCCHHHHHHHhccc
Confidence            588899999999999864

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=94.12  E-value=0.0044  Score=38.96  Aligned_cols=17  Identities=12%  Similarity=0.053  Sum_probs=14.3

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|+.|+|||||++.+.+
T Consensus        12 ~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A           12 AGGTASGKTTLAQALAR   28 (211)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            58889999999987654

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=94.10  E-value=0.0088  Score=36.95  Aligned_cols=17  Identities=12%  Similarity=-0.066  Sum_probs=14.9

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|++|+||||+++.+..
T Consensus         8 ~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            8 TGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHhc
Confidence            58999999999998864

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=94.09  E-value=0.0067  Score=40.82  Aligned_cols=17  Identities=18%  Similarity=0.096  Sum_probs=14.3

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|+.|+|||||++.+.+
T Consensus        86 ~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           86 AGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999987654

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=94.07  E-value=0.0059  Score=40.02  Aligned_cols=18  Identities=11%  Similarity=0.008  Sum_probs=15.4

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        41 ~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           41 VGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             ECSTTSSHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            388999999999998754

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=94.06  E-value=0.069  Score=38.24  Aligned_cols=57  Identities=21%  Similarity=0.231  Sum_probs=35.0

Q ss_pred             ceeeeE-eccCCCcceeeeeccc---c---------------CcCC---CCCCCccceEEEE----E---ecCcEEEEEE
Q psy2967          15 PTVGFN-MRKITKGNVTIWPVPL---S---------------GQFS---QDMIPTVGFNMRK----I---TKGNVTIKVW   65 (101)
Q Consensus        15 ~~~g~~-vG~~~vGKtsl~~~~~---~---------------~~~~---~~~~~t~~~~~~~----~---~~~~~~~~i~   65 (101)
                      |+.-+. +|+.++|||.|++.+.   .               ..|.   .....|.|+-+..    +   ++....+.+.
T Consensus        66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll  145 (457)
T 4ido_A           66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM  145 (457)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred             ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence            444444 4999999999999443   1               1222   1123456654421    1   3456889999


Q ss_pred             eeCCCC
Q psy2967          66 DIGGQP   71 (101)
Q Consensus        66 D~~G~~   71 (101)
                      ||.|..
T Consensus       146 DTEG~~  151 (457)
T 4ido_A          146 DTQGTF  151 (457)
T ss_dssp             EECCBT
T ss_pred             eccCCC
Confidence            999864

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=94.04  E-value=0.0054  Score=41.97  Aligned_cols=16  Identities=13%  Similarity=-0.195  Sum_probs=14.7

Q ss_pred             eccCCCcceeeeeccc
Q psy2967          21 MRKITKGNVTIWPVPL   36 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~   36 (101)
                      +|.+|||||||++.+.
T Consensus        61 ~G~~GaGKSTLl~~l~   76 (337)
T 2qm8_A           61 TGVPGVGKSTTIDALG   76 (337)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999986

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=94.02  E-value=0.006  Score=39.24  Aligned_cols=18  Identities=11%  Similarity=-0.084  Sum_probs=15.3

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        41 iG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           41 HGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             ECCTTSSHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            388899999999998753

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=94.01  E-value=0.0061  Score=40.38  Aligned_cols=18  Identities=11%  Similarity=-0.097  Sum_probs=15.3

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        56 iG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           56 IGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             ECCTTSSHHHHHHHHTTS
T ss_pred             EcCCCCcHHHHHHHHHcC
Confidence            388899999999988753

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=94.00  E-value=0.0062  Score=39.73  Aligned_cols=18  Identities=17%  Similarity=0.038  Sum_probs=15.3

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        34 ~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           34 AGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             ECCTTSSHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            388999999999988753

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=93.96  E-value=0.0063  Score=39.37  Aligned_cols=18  Identities=6%  Similarity=0.119  Sum_probs=15.4

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        40 ~G~nGsGKSTLl~~l~Gl   57 (229)
T 2pze_A           40 AGSTGAGKTSLLMMIMGE   57 (229)
T ss_dssp             ECCTTSSHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            388899999999988753

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=93.96  E-value=0.01  Score=41.84  Aligned_cols=22  Identities=9%  Similarity=0.004  Sum_probs=17.6

Q ss_pred             eeeeEeccCCCcceeeeeccccC
Q psy2967          16 TVGFNMRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        16 ~~g~~vG~~~vGKtsl~~~~~~~   38 (101)
                      .+++ +|++|+|||||++.+.+-
T Consensus        71 ~val-vG~nGaGKSTLln~L~Gl   92 (413)
T 1tq4_A           71 NVAV-TGETGSGKSSFINTLRGI   92 (413)
T ss_dssp             EEEE-EECTTSSHHHHHHHHHTC
T ss_pred             EEEE-ECCCCCcHHHHHHHHhCC
Confidence            3443 699999999999998863

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=93.95  E-value=0.0064  Score=39.62  Aligned_cols=18  Identities=11%  Similarity=-0.032  Sum_probs=15.4

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        38 ~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           38 IGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             ECSTTSSHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            388899999999988854

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=93.93  E-value=0.0065  Score=43.10  Aligned_cols=19  Identities=11%  Similarity=0.160  Sum_probs=16.6

Q ss_pred             eccCCCcceeeeeccccCc
Q psy2967          21 MRKITKGNVTIWPVPLSGQ   39 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~   39 (101)
                      +|++|+|||||++.+.+-.
T Consensus        48 vG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           48 VGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             ECSTTSSSHHHHHHHHTSC
T ss_pred             ECCCCCCHHHHHHHHhCcc
Confidence            5999999999999988654

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=93.92  E-value=0.0076  Score=37.77  Aligned_cols=17  Identities=24%  Similarity=0.046  Sum_probs=14.4

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|++|+||||+++.+..
T Consensus        35 ~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           35 MGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999887753

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=93.91  E-value=0.0058  Score=39.10  Aligned_cols=18  Identities=6%  Similarity=-0.034  Sum_probs=15.4

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        28 iG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           28 LGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             ECCTTSSTTHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            588899999999988754

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=93.86  E-value=0.0068  Score=39.84  Aligned_cols=18  Identities=11%  Similarity=-0.029  Sum_probs=15.2

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++.+.+-
T Consensus        32 iG~NGsGKSTLlk~l~Gl   49 (249)
T 2qi9_C           32 VGPNGAGKSTLLARMAGM   49 (249)
T ss_dssp             ECCTTSSHHHHHHHHTTS
T ss_pred             ECCCCCcHHHHHHHHhCC
Confidence            388899999999998753

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=93.85  E-value=0.0063  Score=37.12  Aligned_cols=16  Identities=13%  Similarity=0.019  Sum_probs=13.9

Q ss_pred             eccCCCcceeeeeccc
Q psy2967          21 MRKITKGNVTIWPVPL   36 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~   36 (101)
                      +|.+|+||||+++.+.
T Consensus        14 ~G~~GsGKSTl~~~l~   29 (175)
T 1knq_A           14 MGVSGSGKSAVASEVA   29 (175)
T ss_dssp             ECSTTSCHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            5999999999988765

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=93.83  E-value=0.011  Score=39.11  Aligned_cols=23  Identities=9%  Similarity=-0.048  Sum_probs=17.9

Q ss_pred             ceeeeEeccCCCcceeeeecccc
Q psy2967          15 PTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        15 ~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      |.+-+.+|.+|+||||+.+++..
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            44444569999999999988775

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=93.82  E-value=0.007  Score=39.95  Aligned_cols=18  Identities=17%  Similarity=0.047  Sum_probs=15.4

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        52 ~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           52 VGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             ECSTTSSHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHhcc
Confidence            388999999999998753

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=93.79  E-value=0.0071  Score=39.90  Aligned_cols=18  Identities=11%  Similarity=-0.001  Sum_probs=15.4

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        47 ~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           47 IGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             ECCTTSSHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            388899999999998854

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=93.77  E-value=0.0072  Score=40.14  Aligned_cols=18  Identities=11%  Similarity=-0.010  Sum_probs=15.4

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        51 ~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           51 VGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             ECSTTSSHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            388999999999988754

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=93.75  E-value=0.0067  Score=39.76  Aligned_cols=18  Identities=17%  Similarity=0.106  Sum_probs=15.5

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        35 ~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           35 MGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             ECSTTSSHHHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            388899999999998864

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=93.74  E-value=0.0074  Score=40.30  Aligned_cols=18  Identities=11%  Similarity=-0.027  Sum_probs=15.3

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        53 iG~NGsGKSTLlk~l~Gl   70 (279)
T 2ihy_A           53 YGLNGAGKTTLLNILNAY   70 (279)
T ss_dssp             ECCTTSSHHHHHHHHTTS
T ss_pred             ECCCCCcHHHHHHHHhCC
Confidence            388899999999988753

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=93.73  E-value=0.011  Score=36.20  Aligned_cols=17  Identities=12%  Similarity=-0.054  Sum_probs=14.4

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|.+||||||+.+.+..
T Consensus         7 ~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            7 TGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EECTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999887654

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=93.72  E-value=0.012  Score=38.13  Aligned_cols=21  Identities=10%  Similarity=-0.114  Sum_probs=17.1

Q ss_pred             eeeeEeccCCCcceeeeeccc
Q psy2967          16 TVGFNMRKITKGNVTIWPVPL   36 (101)
Q Consensus        16 ~~g~~vG~~~vGKtsl~~~~~   36 (101)
                      .+-+.+|.+||||||+++.+.
T Consensus        15 ~i~~~~GkgGvGKTTl~~~La   35 (262)
T 1yrb_A           15 MIVVFVGTAGSGKTTLTGEFG   35 (262)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCCHHHHHHHHH
Confidence            444456999999999999986

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=93.69  E-value=0.0058  Score=38.53  Aligned_cols=17  Identities=12%  Similarity=-0.019  Sum_probs=14.3

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|+.|+|||||++.+.+
T Consensus         7 ~G~nG~GKTTll~~l~g   23 (189)
T 2i3b_A            7 TGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             ESCCSSCHHHHHHHHHH
T ss_pred             ECCCCChHHHHHHHHHh
Confidence            57789999999988664

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=93.67  E-value=0.0071  Score=37.87  Aligned_cols=17  Identities=12%  Similarity=0.008  Sum_probs=14.7

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|.+||||||+.+.+..
T Consensus        31 ~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           31 TGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            59999999999988763

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=93.65  E-value=0.0072  Score=36.54  Aligned_cols=17  Identities=6%  Similarity=0.022  Sum_probs=15.2

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|++|+|||+|++.+..
T Consensus        42 ~G~~G~GKTtL~~~i~~   58 (149)
T 2kjq_A           42 WGEEGAGKSHLLQAWVA   58 (149)
T ss_dssp             ESSSTTTTCHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998875

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=93.64  E-value=0.03  Score=36.46  Aligned_cols=31  Identities=19%  Similarity=0.351  Sum_probs=17.0

Q ss_pred             eeCCCCccce------------EEEEECCChhhHHHHHHHHHHH
Q psy2967          66 DIGGQPRFRS------------IYMVDAADTDKLEASRNELHAL   97 (101)
Q Consensus        66 D~~G~~~~~~------------i~v~d~~~~~sf~~~~~~~~~i   97 (101)
                      +.+||+++|.            |||+|.+|++.++ ++..+.++
T Consensus       108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL  150 (227)
T 3l82_B          108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHI  150 (227)
T ss_dssp             ---------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHH
T ss_pred             ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHH
Confidence            3468888877            9999999998765 66666444

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=93.62  E-value=0.012  Score=36.57  Aligned_cols=19  Identities=5%  Similarity=-0.258  Sum_probs=15.6

Q ss_pred             eEeccCCCcceeeeecccc
Q psy2967          19 FNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~   37 (101)
                      +..|.+|+||||+.+.+..
T Consensus         8 ~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            8 AFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             EEECCTTSSHHHHHHHHHH
T ss_pred             EEEcCCCCCHHHHHHHHHH
Confidence            3459999999999988764

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=93.62  E-value=0.0079  Score=39.56  Aligned_cols=18  Identities=17%  Similarity=0.119  Sum_probs=15.4

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        37 ~G~nGsGKSTLl~~l~Gl   54 (253)
T 2nq2_C           37 LGQNGCGKSTLLDLLLGI   54 (253)
T ss_dssp             ECCSSSSHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            388899999999988854

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=93.62  E-value=0.0073  Score=40.01  Aligned_cols=18  Identities=17%  Similarity=0.067  Sum_probs=15.5

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        52 ~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           52 MGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             ECCTTSSHHHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            388899999999998864

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=93.59  E-value=0.0081  Score=39.73  Aligned_cols=18  Identities=11%  Similarity=0.084  Sum_probs=15.3

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        39 iG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           39 AGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             ECSTTSSHHHHHHHHTTS
T ss_pred             ECCCCCcHHHHHHHHhCC
Confidence            388899999999998753

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=93.55  E-value=0.0076  Score=41.80  Aligned_cols=18  Identities=11%  Similarity=-0.031  Sum_probs=15.5

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|||||||++.+.+-
T Consensus        36 lGpsGsGKSTLLr~iaGl   53 (359)
T 3fvq_A           36 IGASGCGKTTLLRCLAGF   53 (359)
T ss_dssp             EESTTSSHHHHHHHHHTS
T ss_pred             ECCCCchHHHHHHHHhcC
Confidence            388999999999988854

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=93.52  E-value=0.013  Score=36.63  Aligned_cols=18  Identities=11%  Similarity=-0.158  Sum_probs=14.3

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      -+|++|+||||+.+.+..
T Consensus        30 l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           30 VTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             EECSTTSSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            359999999999876553

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=93.52  E-value=0.015  Score=35.58  Aligned_cols=19  Identities=16%  Similarity=0.050  Sum_probs=15.3

Q ss_pred             eEeccCCCcceeeeecccc
Q psy2967          19 FNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~   37 (101)
                      +-.|.+||||||+.+.+..
T Consensus        10 ~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A           10 FVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEESTTSSHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            3469999999999887753

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=93.47  E-value=0.01  Score=38.64  Aligned_cols=23  Identities=17%  Similarity=0.096  Sum_probs=17.7

Q ss_pred             cceeeeEeccCCCcceeeeeccc
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPL   36 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~   36 (101)
                      -|.+-+-+|.+|+||||+.+.+.
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~   53 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQ   53 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            45555557999999999987754

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=93.44  E-value=0.0077  Score=37.95  Aligned_cols=17  Identities=6%  Similarity=-0.070  Sum_probs=15.0

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|++|+|||+|++.+..
T Consensus        29 ~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           29 TGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            59999999999998874

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=93.44  E-value=0.012  Score=35.88  Aligned_cols=18  Identities=6%  Similarity=-0.130  Sum_probs=11.0

Q ss_pred             eEeccCCCcceeeeeccc
Q psy2967          19 FNMRKITKGNVTIWPVPL   36 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~   36 (101)
                      +-.|.+||||||+.+.+.
T Consensus         9 ~l~G~~GsGKST~a~~La   26 (183)
T 2vli_A            9 WINGPFGVGKTHTAHTLH   26 (183)
T ss_dssp             EEECCC----CHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            345999999999998875

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=93.44  E-value=0.012  Score=35.67  Aligned_cols=17  Identities=12%  Similarity=-0.126  Sum_probs=14.5

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|.+||||||+.+.+..
T Consensus         8 ~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            8 VGARGCGMTTVGRELAR   24 (173)
T ss_dssp             ESCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999888764

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=93.33  E-value=0.014  Score=35.75  Aligned_cols=18  Identities=11%  Similarity=-0.178  Sum_probs=14.9

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      -+|.+||||||+.+.+..
T Consensus         9 l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            9 FLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EECCTTSCHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            359999999999888763

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=93.27  E-value=0.015  Score=37.67  Aligned_cols=23  Identities=9%  Similarity=-0.279  Sum_probs=17.7

Q ss_pred             ceeeeEeccCCCcceeeeecccc
Q psy2967          15 PTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        15 ~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      |++-+..|++||||||+.+++..
T Consensus        29 ~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           29 DGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            44444469999999999988864

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=93.27  E-value=0.0078  Score=39.77  Aligned_cols=17  Identities=12%  Similarity=0.059  Sum_probs=14.8

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|+.|+|||||++.+..
T Consensus        31 ~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           31 TGPTGSGKSTTIASMID   47 (261)
T ss_dssp             ECSTTCSHHHHHHHHHH
T ss_pred             ECCCCccHHHHHHHHHH
Confidence            59999999999988764

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=93.25  E-value=0.013  Score=37.82  Aligned_cols=23  Identities=17%  Similarity=0.037  Sum_probs=17.6

Q ss_pred             ceeeeEeccCCCcceeeeecccc
Q psy2967          15 PTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        15 ~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      |.+-+.+|+|||||+|...++..
T Consensus        29 ~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           29 AKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            33445579999999998887764

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=93.25  E-value=0.01  Score=39.37  Aligned_cols=18  Identities=11%  Similarity=0.001  Sum_probs=15.7

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        36 ~G~NGsGKSTLlk~l~Gl   53 (263)
T 2pjz_A           36 LGPNGSGKTTLLRAISGL   53 (263)
T ss_dssp             ECCTTSSHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            488899999999998854

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=93.24  E-value=0.014  Score=37.24  Aligned_cols=17  Identities=18%  Similarity=-0.048  Sum_probs=14.5

Q ss_pred             EeccCCCcceeeeeccc
Q psy2967          20 NMRKITKGNVTIWPVPL   36 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~   36 (101)
                      -+|.+||||||+.+++.
T Consensus        12 l~G~~GsGKsT~a~~La   28 (227)
T 1zd8_A           12 IMGAPGSGKGTVSSRIT   28 (227)
T ss_dssp             EEECTTSSHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHH
Confidence            35999999999998775

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=93.24  E-value=0.0093  Score=37.75  Aligned_cols=17  Identities=12%  Similarity=-0.064  Sum_probs=14.5

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|++|+||||+.+.+..
T Consensus        11 ~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A           11 DGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999887753

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=93.22  E-value=0.0093  Score=41.28  Aligned_cols=18  Identities=17%  Similarity=0.089  Sum_probs=15.5

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|||||||++-+.+-
T Consensus        47 lGpnGsGKSTLLr~iaGl   64 (355)
T 1z47_A           47 LGPSGSGKTTILRLIAGL   64 (355)
T ss_dssp             ECSTTSSHHHHHHHHHTS
T ss_pred             ECCCCCcHHHHHHHHhCC
Confidence            388999999999988754

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=93.21  E-value=0.0094  Score=41.66  Aligned_cols=18  Identities=11%  Similarity=-0.031  Sum_probs=15.5

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|||||||++.+.+-
T Consensus        35 lGpsGsGKSTLLr~iaGl   52 (381)
T 3rlf_A           35 VGPSGCGKSTLLRMIAGL   52 (381)
T ss_dssp             ECCTTSSHHHHHHHHHTS
T ss_pred             EcCCCchHHHHHHHHHcC
Confidence            388999999999988854

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=93.20  E-value=0.012  Score=36.51  Aligned_cols=17  Identities=18%  Similarity=0.114  Sum_probs=14.5

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|.+||||||+.+.+..
T Consensus         6 ~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            6 FGTVGAGKSTISAEISK   22 (205)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCccCHHHHHHHHHH
Confidence            58899999999888764

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=93.17  E-value=0.0096  Score=41.25  Aligned_cols=18  Identities=11%  Similarity=-0.075  Sum_probs=15.4

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|||||||++-+.+-
T Consensus        35 lGpnGsGKSTLLr~iaGl   52 (359)
T 2yyz_A           35 LGPSGCGKTTTLLMLAGI   52 (359)
T ss_dssp             ECSTTSSHHHHHHHHHTS
T ss_pred             EcCCCchHHHHHHHHHCC
Confidence            388999999999988753

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=93.16  E-value=0.0097  Score=41.28  Aligned_cols=18  Identities=11%  Similarity=-0.027  Sum_probs=15.5

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|||||||++-+.+-
T Consensus        35 lGpnGsGKSTLLr~iaGl   52 (362)
T 2it1_A           35 LGPSGSGKSTLLYTIAGI   52 (362)
T ss_dssp             ECCTTSSHHHHHHHHHTS
T ss_pred             ECCCCchHHHHHHHHhcC
Confidence            388999999999988754

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=93.15  E-value=0.0084  Score=36.32  Aligned_cols=19  Identities=11%  Similarity=-0.081  Sum_probs=15.9

Q ss_pred             eEeccCCCcceeeeecccc
Q psy2967          19 FNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~   37 (101)
                      +-.|++|+|||++++.+..
T Consensus        47 ll~G~~G~GKT~la~~~~~   65 (187)
T 2p65_A           47 ILLGDPGVGKTAIVEGLAI   65 (187)
T ss_dssp             EEESCGGGCHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            4459999999999988764

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=93.09  E-value=0.017  Score=37.80  Aligned_cols=19  Identities=11%  Similarity=-0.185  Sum_probs=15.4

Q ss_pred             eEeccCCCcceeeeecccc
Q psy2967          19 FNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~   37 (101)
                      +.+|.+||||||+.+.+..
T Consensus         8 vl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            8 ILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEECCTTSSHHHHHHHHHH
T ss_pred             EEEcCCCCCHHHHHHHHHH
Confidence            3459999999999887764

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=93.07  E-value=0.013  Score=37.16  Aligned_cols=19  Identities=11%  Similarity=-0.069  Sum_probs=15.3

Q ss_pred             eEeccCCCcceeeeecccc
Q psy2967          19 FNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~   37 (101)
                      +.+|.+||||||+.+.+..
T Consensus         9 ~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            9 MISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             EEEESTTSSHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            3469999999999887753

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=93.06  E-value=0.01  Score=41.27  Aligned_cols=18  Identities=11%  Similarity=-0.053  Sum_probs=15.5

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|||||||++-+.+-
T Consensus        35 lGpnGsGKSTLLr~iaGl   52 (372)
T 1g29_1           35 LGPSGCGKTTTLRMIAGL   52 (372)
T ss_dssp             ECSTTSSHHHHHHHHHTS
T ss_pred             ECCCCcHHHHHHHHHHcC
Confidence            388999999999998854

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=93.06  E-value=0.015  Score=35.89  Aligned_cols=21  Identities=14%  Similarity=0.015  Sum_probs=16.1

Q ss_pred             eeeEeccCCCcceeeeecccc
Q psy2967          17 VGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        17 ~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      +-...|.+|+||||+.+.+..
T Consensus        14 ~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           14 IIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            333469999999999887764

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=93.04  E-value=0.009  Score=40.52  Aligned_cols=17  Identities=18%  Similarity=0.030  Sum_probs=14.9

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|++|+|||+|++.+.+
T Consensus        57 ~Gp~G~GKTTLa~~ia~   73 (334)
T 1in4_A           57 AGPPGLGKTTLAHIIAS   73 (334)
T ss_dssp             ESSTTSSHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHH
Confidence            59999999999988764

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=93.02  E-value=0.0091  Score=40.52  Aligned_cols=16  Identities=6%  Similarity=0.108  Sum_probs=14.0

Q ss_pred             eccCCCcceeeeeccc
Q psy2967          21 MRKITKGNVTIWPVPL   36 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~   36 (101)
                      +|++|+|||||++.+.
T Consensus       132 vGpsGsGKSTLl~lL~  147 (305)
T 2v9p_A          132 IGPPNTGKSMLCNSLI  147 (305)
T ss_dssp             ECSSSSSHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHh
Confidence            5889999999998766

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=93.00  E-value=0.013  Score=36.97  Aligned_cols=17  Identities=6%  Similarity=0.143  Sum_probs=14.9

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|++|+|||+|++.+..
T Consensus        58 ~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           58 WGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999988764

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=92.98  E-value=0.0092  Score=39.58  Aligned_cols=17  Identities=6%  Similarity=-0.117  Sum_probs=14.9

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|++|+|||+|++.+.+
T Consensus        50 ~Gp~GtGKTtLakala~   66 (274)
T 2x8a_A           50 AGPPGCGKTLLAKAVAN   66 (274)
T ss_dssp             ESSTTSCHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHH
Confidence            49999999999988764

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=92.97  E-value=0.011  Score=38.18  Aligned_cols=17  Identities=6%  Similarity=-0.046  Sum_probs=15.1

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|++|+|||+|++.+..
T Consensus        55 ~G~~G~GKTtl~~~i~~   71 (254)
T 1ixz_A           55 VGPPGVGKTHLARAVAG   71 (254)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998774

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=92.96  E-value=0.011  Score=41.19  Aligned_cols=17  Identities=12%  Similarity=-0.111  Sum_probs=15.0

Q ss_pred             ccCCCcceeeeeccccC
Q psy2967          22 RKITKGNVTIWPVPLSG   38 (101)
Q Consensus        22 G~~~vGKtsl~~~~~~~   38 (101)
                      |+.|||||||++-+.+-
T Consensus        44 GpnGsGKSTLLr~iaGl   60 (372)
T 1v43_A           44 GPSGCGKTTTLRMIAGL   60 (372)
T ss_dssp             CCTTSSHHHHHHHHHTS
T ss_pred             CCCCChHHHHHHHHHcC
Confidence            88999999999988753

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=92.95  E-value=0.012  Score=39.60  Aligned_cols=18  Identities=6%  Similarity=0.119  Sum_probs=15.2

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        70 ~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           70 AGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             EESTTSSHHHHHHHHTTS
T ss_pred             ECCCCCcHHHHHHHHhcC
Confidence            388899999999988753

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=92.95  E-value=0.01  Score=37.79  Aligned_cols=17  Identities=12%  Similarity=0.149  Sum_probs=15.2

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|++|+|||+|+..+..
T Consensus        30 ~G~~GsGKTtl~~~l~~   46 (243)
T 1n0w_A           30 FGEFRTGKTQICHTLAV   46 (243)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHH
Confidence            58999999999999876

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=92.87  E-value=0.017  Score=36.58  Aligned_cols=19  Identities=16%  Similarity=-0.055  Sum_probs=15.2

Q ss_pred             eEeccCCCcceeeeecccc
Q psy2967          19 FNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~   37 (101)
                      +-+|.+||||||+.+.+..
T Consensus         8 ~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            8 VLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             EEECCTTSSHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            3459999999999887654

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=92.87  E-value=0.019  Score=39.17  Aligned_cols=20  Identities=20%  Similarity=0.165  Sum_probs=15.5

Q ss_pred             eeeeEeccCCCcceeeeeccc
Q psy2967          16 TVGFNMRKITKGNVTIWPVPL   36 (101)
Q Consensus        16 ~~g~~vG~~~vGKtsl~~~~~   36 (101)
                      ++| .+|++|||||||++.+.
T Consensus        94 iig-I~GpsGSGKSTl~~~L~  113 (321)
T 3tqc_A           94 IIG-IAGSVAVGKSTTSRVLK  113 (321)
T ss_dssp             EEE-EECCTTSSHHHHHHHHH
T ss_pred             EEE-EECCCCCCHHHHHHHHH
Confidence            344 36999999999987764

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=92.86  E-value=0.019  Score=35.89  Aligned_cols=21  Identities=29%  Similarity=0.292  Sum_probs=16.8

Q ss_pred             eeeeEeccCCCcceeeeecccc
Q psy2967          16 TVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        16 ~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      ++++ +|.+||||||+.+.+..
T Consensus         4 ~i~l-~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            4 IVGL-TGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEE-ECSTTSCHHHHHHHHHT
T ss_pred             EEEE-ECCCCCCHHHHHHHHHH
Confidence            3443 59999999999988865

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=92.84  E-value=0.014  Score=36.47  Aligned_cols=19  Identities=11%  Similarity=-0.029  Sum_probs=15.8

Q ss_pred             eEeccCCCcceeeeecccc
Q psy2967          19 FNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~   37 (101)
                      +-.|++|+|||++++.+..
T Consensus        49 ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           49 LFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEECSTTSCHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            3459999999999988764

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=92.82  E-value=0.0097  Score=37.15  Aligned_cols=17  Identities=18%  Similarity=0.067  Sum_probs=14.4

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|.+||||||+.+.+..
T Consensus         7 ~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            7 TGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHH
Confidence            58899999999987654

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=92.81  E-value=0.017  Score=35.54  Aligned_cols=18  Identities=11%  Similarity=-0.097  Sum_probs=14.9

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      -+|.+||||||+.+.+..
T Consensus        14 l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A           14 VVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             EEECTTSSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            359999999999887753

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=92.78  E-value=0.018  Score=36.00  Aligned_cols=21  Identities=10%  Similarity=-0.184  Sum_probs=16.3

Q ss_pred             eeeEeccCCCcceeeeecccc
Q psy2967          17 VGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        17 ~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      +-...|.+||||||+.+.+..
T Consensus        12 ~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           12 FIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            333459999999999988764

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=92.74  E-value=0.012  Score=40.93  Aligned_cols=18  Identities=11%  Similarity=-0.080  Sum_probs=15.2

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|||||||++.+.+-
T Consensus        60 iGpnGaGKSTLlr~i~GL   77 (366)
T 3tui_C           60 IGASGAGKSTLIRCVNLL   77 (366)
T ss_dssp             ECCTTSSHHHHHHHHHTS
T ss_pred             EcCCCchHHHHHHHHhcC
Confidence            388999999999887753

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=92.74  E-value=0.021  Score=35.21  Aligned_cols=18  Identities=17%  Similarity=-0.031  Sum_probs=14.7

Q ss_pred             eEeccCCCcceeeeeccc
Q psy2967          19 FNMRKITKGNVTIWPVPL   36 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~   36 (101)
                      ..+|.+|+||||+.+.+.
T Consensus        17 ~l~G~~GsGKsT~~~~L~   34 (186)
T 2yvu_A           17 WLTGLPGSGKTTIATRLA   34 (186)
T ss_dssp             EEECCTTSSHHHHHHHHH
T ss_pred             EEEcCCCCCHHHHHHHHH
Confidence            345999999999988765

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=92.74  E-value=0.017  Score=36.21  Aligned_cols=18  Identities=11%  Similarity=-0.092  Sum_probs=15.6

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      .+|++|+|||+|+..+..
T Consensus        25 i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           25 VYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EECSTTSSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            358999999999998875

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=92.72  E-value=0.0093  Score=40.96  Aligned_cols=17  Identities=6%  Similarity=0.026  Sum_probs=14.6

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|++|+|||||++.+.+
T Consensus       176 vG~nGsGKSTLlk~L~g  192 (365)
T 1lw7_A          176 LGGESSGKSVLVNKLAA  192 (365)
T ss_dssp             ECCTTSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999987654

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=92.72  E-value=0.018  Score=35.97  Aligned_cols=18  Identities=11%  Similarity=-0.206  Sum_probs=15.1

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      -.|.+||||||+.+.+..
T Consensus        14 l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A           14 LEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             EEESTTSSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            359999999999988764

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=92.68  E-value=0.019  Score=35.23  Aligned_cols=18  Identities=6%  Similarity=0.019  Sum_probs=15.1

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      -+|.+||||||+.+.+..
T Consensus        10 l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A           10 LIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             EECSTTSSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            359999999999988764

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=92.66  E-value=0.015  Score=38.74  Aligned_cols=19  Identities=5%  Similarity=-0.176  Sum_probs=15.5

Q ss_pred             eEeccCCCcceeeeecccc
Q psy2967          19 FNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~   37 (101)
                      +-.|+||+|||+|++.+..
T Consensus        40 Ll~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           40 GIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             EEEECTTSCHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            3349999999999988764

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=92.66  E-value=0.016  Score=37.93  Aligned_cols=17  Identities=6%  Similarity=-0.138  Sum_probs=14.4

Q ss_pred             EeccCCCcceeeeeccc
Q psy2967          20 NMRKITKGNVTIWPVPL   36 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~   36 (101)
                      .+|++|+|||||.+.+.
T Consensus         6 I~G~~GSGKSTla~~La   22 (253)
T 2ze6_A            6 IYGPTCSGKTDMAIQIA   22 (253)
T ss_dssp             EECCTTSSHHHHHHHHH
T ss_pred             EECCCCcCHHHHHHHHH
Confidence            46999999999988765

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=92.53  E-value=0.016  Score=35.42  Aligned_cols=18  Identities=17%  Similarity=-0.090  Sum_probs=15.2

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      ..|.+|+||||+.+.+..
T Consensus        16 i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           16 LTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             EECSTTSSHHHHHHHHHH
T ss_pred             EEeCCCCCHHHHHHHHHH
Confidence            359999999999988763

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.52  E-value=0.015  Score=41.24  Aligned_cols=23  Identities=13%  Similarity=0.167  Sum_probs=18.2

Q ss_pred             ceeeeEe-ccCCCcceeeeecccc
Q psy2967          15 PTVGFNM-RKITKGNVTIWPVPLS   37 (101)
Q Consensus        15 ~~~g~~v-G~~~vGKtsl~~~~~~   37 (101)
                      |..|+-+ |+||+|||+|++.+..
T Consensus       205 ~prGiLL~GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            4556554 9999999999988764

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=92.51  E-value=0.017  Score=35.77  Aligned_cols=18  Identities=6%  Similarity=-0.221  Sum_probs=15.2

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      -.|++|+|||++++.+..
T Consensus        43 l~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           43 FSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             EECSTTSSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            359999999999988764

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=92.50  E-value=0.019  Score=38.45  Aligned_cols=17  Identities=6%  Similarity=-0.298  Sum_probs=13.8

Q ss_pred             EeccCCCcceeeeeccc
Q psy2967          20 NMRKITKGNVTIWPVPL   36 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~   36 (101)
                      .+|++|||||||++.+.
T Consensus        36 I~G~sGsGKSTla~~L~   52 (290)
T 1odf_A           36 FSGPQGSGKSFTSIQIY   52 (290)
T ss_dssp             EECCTTSSHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHH
Confidence            35999999999986643

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=92.49  E-value=0.022  Score=39.97  Aligned_cols=23  Identities=22%  Similarity=0.125  Sum_probs=18.6

Q ss_pred             ceeeeEeccCCCcceeeeecccc
Q psy2967          15 PTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        15 ~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      |.+-+.+|.+|+||||+.+++..
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45555679999999999999874

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=92.49  E-value=0.022  Score=38.09  Aligned_cols=22  Identities=14%  Similarity=0.083  Sum_probs=14.0

Q ss_pred             ceeeeEeccCCCcceeeeecccc
Q psy2967          15 PTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        15 ~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      +++++ .|++|+||||+.+.+..
T Consensus         6 ~iIgI-tG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            6 PIISV-TGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             CEEEE-ESCC---CCTHHHHHHH
T ss_pred             eEEEE-ECCCCCCHHHHHHHHHH
Confidence            35554 39999999999887664

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=92.48  E-value=0.014  Score=35.68  Aligned_cols=17  Identities=12%  Similarity=0.073  Sum_probs=14.3

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|.+|+||||+.+.+..
T Consensus        10 ~G~~GsGKsTla~~La~   26 (175)
T 1via_A           10 IGFMGSGKSTLARALAK   26 (175)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            59999999999887653

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=92.47  E-value=0.014  Score=40.91  Aligned_cols=16  Identities=19%  Similarity=0.244  Sum_probs=14.3

Q ss_pred             ccCCCcceeeeecccc
Q psy2967          22 RKITKGNVTIWPVPLS   37 (101)
Q Consensus        22 G~~~vGKtsl~~~~~~   37 (101)
                      |+.|||||||++.+.+
T Consensus        54 GpsGsGKSTLLr~iaG   69 (390)
T 3gd7_A           54 GRTGSGKSTLLSAFLR   69 (390)
T ss_dssp             ESTTSSHHHHHHHHHT
T ss_pred             CCCCChHHHHHHHHhC
Confidence            8899999999988774

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=92.43  E-value=0.021  Score=35.43  Aligned_cols=17  Identities=12%  Similarity=-0.113  Sum_probs=14.8

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|.+||||||+.+.+..
T Consensus        10 ~G~~GsGKsT~~~~L~~   26 (204)
T 2v54_A           10 EGLDKSGKTTQCMNIME   26 (204)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            59999999999988775

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=92.42  E-value=0.02  Score=35.97  Aligned_cols=17  Identities=18%  Similarity=-0.064  Sum_probs=14.7

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|.+||||||+.+.+..
T Consensus         6 ~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            6 MGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999988753

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=92.42  E-value=0.039  Score=35.35  Aligned_cols=18  Identities=17%  Similarity=-0.073  Sum_probs=15.2

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      .|..|+||||+++.+.+.
T Consensus        26 ~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           26 EGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             ECSTTSCHHHHHHTTGGG
T ss_pred             ECCCCCCHHHHHHHHHhc
Confidence            488899999999988753

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=92.41  E-value=0.0091  Score=41.18  Aligned_cols=18  Identities=6%  Similarity=-0.031  Sum_probs=15.3

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|||||||++-+.+-
T Consensus        32 lGpnGsGKSTLLr~iaGl   49 (348)
T 3d31_A           32 LGPTGAGKTLFLELIAGF   49 (348)
T ss_dssp             ECCCTHHHHHHHHHHHTS
T ss_pred             ECCCCccHHHHHHHHHcC
Confidence            388899999999988754

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=92.41  E-value=0.015  Score=38.76  Aligned_cols=19  Identities=11%  Similarity=0.036  Sum_probs=15.8

Q ss_pred             EeccCCCcceeeeeccccC
Q psy2967          20 NMRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~   38 (101)
                      ..|++|+|||+|++.+...
T Consensus        36 i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           36 LLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             EECCTTSSHHHHHHHHHHH
T ss_pred             EECCCcCCHHHHHHHHHHH
Confidence            3599999999999988743

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=92.40  E-value=0.031  Score=34.74  Aligned_cols=17  Identities=12%  Similarity=-0.087  Sum_probs=14.5

Q ss_pred             EeccCCCcceeeeeccc
Q psy2967          20 NMRKITKGNVTIWPVPL   36 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~   36 (101)
                      ..|.+||||||+.+.+.
T Consensus        20 l~G~~GsGKsT~~~~L~   36 (203)
T 1ukz_A           20 VLGGPGAGKGTQCEKLV   36 (203)
T ss_dssp             EECSTTSSHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHH
Confidence            35999999999987775

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=92.36  E-value=0.018  Score=35.35  Aligned_cols=17  Identities=18%  Similarity=-0.046  Sum_probs=14.6

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|.+|+||||+.+.+..
T Consensus         8 ~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            8 VGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999887754

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=92.34  E-value=0.02  Score=37.89  Aligned_cols=17  Identities=12%  Similarity=-0.091  Sum_probs=14.7

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|++|+|||||++.+..
T Consensus        41 ~G~~G~GKTTl~~~ia~   57 (296)
T 1cr0_A           41 TSGSGMGKSTFVRQQAL   57 (296)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHH
Confidence            58999999999988764

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=92.30  E-value=0.018  Score=36.73  Aligned_cols=19  Identities=11%  Similarity=-0.186  Sum_probs=15.7

Q ss_pred             eEeccCCCcceeeeecccc
Q psy2967          19 FNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~   37 (101)
                      +-+|+|||||+|...++..
T Consensus         4 il~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            4 VFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             EEECSTTSSHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            3469999999999888764

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=92.27  E-value=0.022  Score=38.93  Aligned_cols=22  Identities=14%  Similarity=-0.111  Sum_probs=16.5

Q ss_pred             eeeeEeccCCCcceeeeecccc
Q psy2967          16 TVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        16 ~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      .+-.-+|+.||||||+++.+..
T Consensus       130 ~vi~lvG~nGaGKTTll~~Lag  151 (328)
T 3e70_C          130 YVIMFVGFNGSGKTTTIAKLAN  151 (328)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3334468899999999987664

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=92.23  E-value=0.011  Score=40.08  Aligned_cols=17  Identities=18%  Similarity=0.184  Sum_probs=14.6

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|+.|+|||||++-+..
T Consensus        86 vG~sGsGKSTLl~ll~g  102 (306)
T 3nh6_A           86 VGPSGAGKSTILRLLFR  102 (306)
T ss_dssp             ESSSCHHHHHHHHHHTT
T ss_pred             ECCCCchHHHHHHHHHc
Confidence            38999999999988764

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=92.21  E-value=0.022  Score=35.72  Aligned_cols=16  Identities=13%  Similarity=-0.116  Sum_probs=13.8

Q ss_pred             eccCCCcceeeeeccc
Q psy2967          21 MRKITKGNVTIWPVPL   36 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~   36 (101)
                      +|.+|+||||+++.+.
T Consensus        28 ~G~~GsGKstl~~~l~   43 (201)
T 1rz3_A           28 DGLSRSGKTTLANQLS   43 (201)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999987765

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=92.20  E-value=0.016  Score=38.63  Aligned_cols=18  Identities=11%  Similarity=0.182  Sum_probs=15.4

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      ..|++|+|||+|++.+..
T Consensus        35 i~G~~G~GKT~L~~~~~~   52 (357)
T 2fna_A           35 VLGLRRTGKSSIIKIGIN   52 (357)
T ss_dssp             EEESTTSSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            359999999999988764

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=92.14  E-value=0.014  Score=38.40  Aligned_cols=17  Identities=6%  Similarity=-0.046  Sum_probs=15.1

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|++|+|||+|++.+..
T Consensus        79 ~Gp~GtGKTtl~~~i~~   95 (278)
T 1iy2_A           79 VGPPGVGKTHLARAVAG   95 (278)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCcChHHHHHHHHHH
Confidence            59999999999988774

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=92.05  E-value=0.025  Score=34.63  Aligned_cols=17  Identities=18%  Similarity=0.028  Sum_probs=14.1

Q ss_pred             EeccCCCcceeeeeccc
Q psy2967          20 NMRKITKGNVTIWPVPL   36 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~   36 (101)
                      -+|+.|+|||||+..+.
T Consensus        31 i~G~NGsGKStll~ai~   47 (182)
T 3kta_A           31 IVGANGSGKSNIGDAIL   47 (182)
T ss_dssp             EEECTTSSHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHH
Confidence            35999999999988754

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=92.02  E-value=0.02  Score=39.00  Aligned_cols=18  Identities=11%  Similarity=-0.064  Sum_probs=15.5

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++.+.+-
T Consensus       177 ~G~~GsGKTTll~~l~g~  194 (330)
T 2pt7_A          177 CGGTGSGKTTYIKSIMEF  194 (330)
T ss_dssp             EESTTSCHHHHHHHGGGG
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            488999999999988853

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=91.99  E-value=0.011  Score=37.11  Aligned_cols=17  Identities=12%  Similarity=-0.156  Sum_probs=14.2

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|.+|+||||+++.+..
T Consensus         6 ~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            6 EGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            47789999999988763

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=91.95  E-value=0.018  Score=38.80  Aligned_cols=18  Identities=17%  Similarity=0.089  Sum_probs=15.5

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      ..|++|+|||+|++.+..
T Consensus        50 i~G~~G~GKTtl~~~l~~   67 (386)
T 2qby_A           50 IYGLTGTGKTAVVKFVLS   67 (386)
T ss_dssp             EEECTTSSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            359999999999998775

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=91.94  E-value=0.019  Score=39.70  Aligned_cols=17  Identities=18%  Similarity=0.126  Sum_probs=14.9

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|+.|+|||||++.+.+
T Consensus       129 ~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          129 TGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             ECSTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHh
Confidence            59999999999998764

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=91.93  E-value=0.025  Score=35.57  Aligned_cols=17  Identities=18%  Similarity=-0.101  Sum_probs=14.7

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|.+|+||||+.+.+..
T Consensus         6 ~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            6 MGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999988753

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.82  E-value=0.021  Score=40.63  Aligned_cols=23  Identities=13%  Similarity=0.150  Sum_probs=18.3

Q ss_pred             ceeeeEe-ccCCCcceeeeecccc
Q psy2967          15 PTVGFNM-RKITKGNVTIWPVPLS   37 (101)
Q Consensus        15 ~~~g~~v-G~~~vGKtsl~~~~~~   37 (101)
                      |..|+-+ |+||+|||+|++.+..
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~  237 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAA  237 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHH
Confidence            4566554 9999999999988764

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=91.68  E-value=0.0091  Score=41.24  Aligned_cols=18  Identities=11%  Similarity=0.043  Sum_probs=15.4

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|||||||++-+.+-
T Consensus        37 lGpnGsGKSTLLr~iaGl   54 (353)
T 1oxx_K           37 LGPSGAGKTTFMRIIAGL   54 (353)
T ss_dssp             ECSCHHHHHHHHHHHHTS
T ss_pred             ECCCCCcHHHHHHHHhCC
Confidence            388899999999988854

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=91.68  E-value=0.028  Score=37.93  Aligned_cols=17  Identities=12%  Similarity=-0.183  Sum_probs=14.4

Q ss_pred             EeccCCCcceeeeeccc
Q psy2967          20 NMRKITKGNVTIWPVPL   36 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~   36 (101)
                      .+|+.||||||+++.+.
T Consensus       107 lvG~nGsGKTTll~~La  123 (304)
T 1rj9_A          107 VVGVNGVGKTTTIAKLG  123 (304)
T ss_dssp             EECSTTSSHHHHHHHHH
T ss_pred             EECCCCCcHHHHHHHHH
Confidence            35888999999998876

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=91.67  E-value=0.03  Score=37.87  Aligned_cols=23  Identities=13%  Similarity=0.072  Sum_probs=17.8

Q ss_pred             ceeeeE-eccCCCcceeeeecccc
Q psy2967          15 PTVGFN-MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        15 ~~~g~~-vG~~~vGKtsl~~~~~~   37 (101)
                      |..++- .|++|+|||+|++.+..
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala~   67 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVAT   67 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCceEEEECCCCccHHHHHHHHHH
Confidence            444544 49999999999988774

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=91.66  E-value=0.019  Score=39.53  Aligned_cols=17  Identities=12%  Similarity=0.194  Sum_probs=15.1

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|+.|+|||||++.+..
T Consensus       181 vG~sGsGKSTll~~l~~  197 (361)
T 2gza_A          181 AGETGSGKTTLMKALMQ  197 (361)
T ss_dssp             EESSSSCHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHh
Confidence            48999999999999875

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.65  E-value=0.022  Score=40.45  Aligned_cols=23  Identities=13%  Similarity=0.008  Sum_probs=17.9

Q ss_pred             ceeeeEe-ccCCCcceeeeecccc
Q psy2967          15 PTVGFNM-RKITKGNVTIWPVPLS   37 (101)
Q Consensus        15 ~~~g~~v-G~~~vGKtsl~~~~~~   37 (101)
                      |..|+-+ |+||+|||+|++.+..
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~  237 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAA  237 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHH
Confidence            3456543 9999999999988774

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=91.64  E-value=0.024  Score=36.65  Aligned_cols=18  Identities=6%  Similarity=-0.079  Sum_probs=15.0

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      -.|++|+|||+|++.+..
T Consensus        50 l~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           50 MVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             EECCTTSCHHHHHHHHHH
T ss_pred             EECcCCCCHHHHHHHHHH
Confidence            359999999999987764

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=91.61  E-value=0.034  Score=35.08  Aligned_cols=17  Identities=18%  Similarity=0.069  Sum_probs=14.5

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|.+||||||+.+.+..
T Consensus        10 ~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A           10 TGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999888754

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=91.59  E-value=0.028  Score=35.76  Aligned_cols=17  Identities=12%  Similarity=-0.142  Sum_probs=14.4

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|++|+|||+|+.++..
T Consensus        29 ~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           29 SGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999887754

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=91.55  E-value=0.025  Score=35.16  Aligned_cols=17  Identities=6%  Similarity=0.024  Sum_probs=14.7

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|++|+|||+|+..+..
T Consensus        60 ~G~~GtGKT~la~~i~~   76 (202)
T 2w58_A           60 HGSFGVGKTYLLAAIAN   76 (202)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999987764

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=91.50  E-value=0.033  Score=34.55  Aligned_cols=17  Identities=6%  Similarity=-0.058  Sum_probs=14.5

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|.+|+||||+.+.+..
T Consensus         8 ~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            8 DGPSASGKSSVARRVAA   24 (208)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999887754

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=91.49  E-value=0.03  Score=37.75  Aligned_cols=18  Identities=11%  Similarity=-0.154  Sum_probs=14.8

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      -+|+.||||||+++.+..
T Consensus       105 lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          105 IVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             EECCTTSCHHHHHHHHHH
T ss_pred             EEcCCCCCHHHHHHHHHH
Confidence            358889999999987664

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=91.49  E-value=0.021  Score=37.21  Aligned_cols=16  Identities=13%  Similarity=-0.070  Sum_probs=14.4

Q ss_pred             eccCCCcceeeeeccc
Q psy2967          21 MRKITKGNVTIWPVPL   36 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~   36 (101)
                      +|++||||||+++.+.
T Consensus        33 ~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           33 DGPSGAGKGTLCKALA   48 (252)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999998877

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=91.41  E-value=0.032  Score=34.42  Aligned_cols=17  Identities=6%  Similarity=0.024  Sum_probs=14.4

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|.+||||||+.+.+..
T Consensus        16 ~G~~GsGKSTv~~~La~   32 (184)
T 1y63_A           16 TGTPGTGKTSMAEMIAA   32 (184)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999887654

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=91.41  E-value=0.036  Score=34.88  Aligned_cols=18  Identities=11%  Similarity=-0.158  Sum_probs=14.7

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      .+|.+|+||||+.+.+..
T Consensus        30 ~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           30 LTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             EECSTTSSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            359999999999987653

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=91.38  E-value=0.023  Score=39.32  Aligned_cols=17  Identities=12%  Similarity=0.059  Sum_probs=14.9

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|+.|+||||+++.+..
T Consensus       142 vG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          142 TGPTGSGKSTTIASMID  158 (372)
T ss_dssp             ECSSSSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHh
Confidence            59999999999988774

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=91.36  E-value=0.023  Score=38.04  Aligned_cols=17  Identities=6%  Similarity=0.137  Sum_probs=15.0

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|++|+|||+|++.+..
T Consensus        43 ~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           43 YGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             ECSSSSSHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHH
Confidence            49999999999988774

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=91.32  E-value=0.028  Score=36.81  Aligned_cols=17  Identities=6%  Similarity=-0.038  Sum_probs=15.0

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|++|+|||+|++.+..
T Consensus        57 ~G~~GtGKT~la~~la~   73 (285)
T 3h4m_A           57 YGPPGTGKTLLAKAVAT   73 (285)
T ss_dssp             ESSSSSSHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHH
Confidence            49999999999998864

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=91.25  E-value=0.037  Score=37.22  Aligned_cols=23  Identities=17%  Similarity=0.147  Sum_probs=17.5

Q ss_pred             ceeeeE-eccCCCcceeeeecccc
Q psy2967          15 PTVGFN-MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        15 ~~~g~~-vG~~~vGKtsl~~~~~~   37 (101)
                      |..++- .|++|+|||+|++.+..
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~   73 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVAT   73 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHH
Confidence            444544 49999999999988764

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=91.23  E-value=0.036  Score=37.76  Aligned_cols=28  Identities=21%  Similarity=0.354  Sum_probs=20.0

Q ss_pred             eCCCCccce------------EEEEECCChhhHHHHHHHHH
Q psy2967          67 IGGQPRFRS------------IYMVDAADTDKLEASRNELH   95 (101)
Q Consensus        67 ~~G~~~~~~------------i~v~d~~~~~sf~~~~~~~~   95 (101)
                      .+||+++|.            |||+|.+|+++++ +++.+.
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~  233 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFS  233 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHH
Confidence            578988877            9999999998865 555554

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=91.21  E-value=0.025  Score=38.36  Aligned_cols=19  Identities=5%  Similarity=-0.099  Sum_probs=15.9

Q ss_pred             EeccCCCcceeeeeccccC
Q psy2967          20 NMRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~   38 (101)
                      ..|++|+|||+|++.+...
T Consensus        49 i~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           49 LLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EECCTTSSHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHH
Confidence            3599999999999887743

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=91.20  E-value=0.032  Score=36.69  Aligned_cols=17  Identities=6%  Similarity=-0.123  Sum_probs=14.9

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|++|+|||+|+..+..
T Consensus        36 ~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           36 VSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            48999999999988774

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=91.20  E-value=0.034  Score=35.47  Aligned_cols=17  Identities=12%  Similarity=-0.107  Sum_probs=14.5

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|.+||||||+.+.+..
T Consensus         6 ~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            6 FGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999888754

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=91.13  E-value=0.052  Score=35.35  Aligned_cols=17  Identities=18%  Similarity=0.145  Sum_probs=14.9

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|.+|+||||+++.+..
T Consensus        30 eG~~GsGKST~~~~L~~   46 (263)
T 1p5z_B           30 EGNIAAGKSTFVNILKQ   46 (263)
T ss_dssp             ECSTTSSHHHHHTTTGG
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999988874

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=91.10  E-value=0.04  Score=34.03  Aligned_cols=17  Identities=24%  Similarity=0.206  Sum_probs=14.7

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|.+||||||+.+.+..
T Consensus        14 ~G~~GsGKST~~~~La~   30 (203)
T 1uf9_A           14 TGNIGSGKSTVAALLRS   30 (203)
T ss_dssp             EECTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999988764

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=91.09  E-value=0.023  Score=38.32  Aligned_cols=18  Identities=17%  Similarity=-0.075  Sum_probs=15.5

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      -.|++|+|||++++.+..
T Consensus        41 l~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           41 LYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EECSTTSSHHHHHHTHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            369999999999988765

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=91.06  E-value=0.035  Score=33.98  Aligned_cols=17  Identities=12%  Similarity=-0.191  Sum_probs=14.8

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|.+||||||+.+.+..
T Consensus         6 ~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            6 EGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             ECSTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999988765

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=91.03  E-value=0.031  Score=36.86  Aligned_cols=17  Identities=6%  Similarity=0.005  Sum_probs=14.8

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|++|+|||++++.+..
T Consensus        60 ~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           60 FGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             ESSSSSCHHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHHH
Confidence            49999999999988764

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=90.98  E-value=0.045  Score=35.25  Aligned_cols=17  Identities=12%  Similarity=-0.015  Sum_probs=14.6

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|.+||||||+++++..
T Consensus        32 ~G~~GsGKsT~~~~l~~   48 (229)
T 4eaq_A           32 EGPEGSGKTTVINEVYH   48 (229)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            49999999999988764

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=90.96  E-value=0.031  Score=35.93  Aligned_cols=17  Identities=6%  Similarity=-0.037  Sum_probs=14.8

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|++|+|||++++.+..
T Consensus        45 ~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           45 LGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             ESCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999988764

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=90.77  E-value=0.039  Score=33.17  Aligned_cols=17  Identities=12%  Similarity=0.118  Sum_probs=14.6

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|.+|+||||+.+.+..
T Consensus         6 ~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            6 IGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             ESCTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            58999999999888764

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=90.75  E-value=0.039  Score=34.77  Aligned_cols=17  Identities=12%  Similarity=-0.001  Sum_probs=14.5

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|.+||||||+.+.+..
T Consensus         6 ~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            6 LGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999888764

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=90.73  E-value=0.027  Score=38.05  Aligned_cols=17  Identities=12%  Similarity=0.110  Sum_probs=15.1

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|++|+|||++++.+..
T Consensus        50 ~G~~G~GKT~l~~~~~~   66 (387)
T 2v1u_A           50 YGLTGTGKTAVARLVLR   66 (387)
T ss_dssp             CBCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999988774

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=90.67  E-value=0.042  Score=35.17  Aligned_cols=18  Identities=17%  Similarity=-0.040  Sum_probs=14.8

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      -+|.+|+||||+.+.+..
T Consensus        21 l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           21 LLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             EECCTTSSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            359999999999887753

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=90.60  E-value=0.039  Score=39.90  Aligned_cols=18  Identities=11%  Similarity=0.119  Sum_probs=15.5

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      .+|+.|+||||+++.+.+
T Consensus       265 I~GptGSGKTTlL~aL~~  282 (511)
T 2oap_1          265 VVGETASGKTTTLNAIMM  282 (511)
T ss_dssp             EEESTTSSHHHHHHHHGG
T ss_pred             EECCCCCCHHHHHHHHHh
Confidence            359999999999998874

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=90.60  E-value=0.047  Score=32.39  Aligned_cols=18  Identities=6%  Similarity=-0.256  Sum_probs=15.3

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      .|++|+|||++++.+...
T Consensus        33 ~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           33 TGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             EEETTCCHHHHHGGGCCT
T ss_pred             ECCCCccHHHHHHHHHHh
Confidence            599999999999887753

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=90.56  E-value=0.028  Score=38.59  Aligned_cols=18  Identities=6%  Similarity=-0.010  Sum_probs=15.5

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|++|+|||+|++.+...
T Consensus       137 ~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          137 FGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EESTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999988753

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=90.50  E-value=0.026  Score=38.84  Aligned_cols=18  Identities=17%  Similarity=0.182  Sum_probs=15.5

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++.+.+.
T Consensus        77 iG~nGaGKTTLl~~I~g~   94 (347)
T 2obl_A           77 FAGSGVGKSTLLGMICNG   94 (347)
T ss_dssp             EECTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            488899999999888865

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=90.49  E-value=0.55  Score=31.37  Aligned_cols=23  Identities=13%  Similarity=-0.086  Sum_probs=19.6

Q ss_pred             EEEEECCChh-hHHHHHHHHHHHH
Q psy2967          76 IYMVDAADTD-KLEASRNELHALI   98 (101)
Q Consensus        76 i~v~d~~~~~-sf~~~~~~~~~i~   98 (101)
                      ++|||++++. +++.+.+|+..+.
T Consensus        84 liV~d~~~p~~s~~~l~~~l~~~~  107 (302)
T 2yv5_A           84 IIVETLKMPEFNNYLLDNMLVVYE  107 (302)
T ss_dssp             EEEECSTTTTCCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHH
Confidence            8899999986 8999999987653

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=90.48  E-value=0.043  Score=38.00  Aligned_cols=18  Identities=11%  Similarity=-0.154  Sum_probs=14.7

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      -+|+.||||||++..+..
T Consensus       162 lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          162 IVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             EECCTTSCHHHHHHHHHH
T ss_pred             EEcCCCChHHHHHHHHHh
Confidence            358889999999987664

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=90.48  E-value=0.028  Score=36.50  Aligned_cols=17  Identities=6%  Similarity=-0.025  Sum_probs=14.6

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|++|+|||+|++.+..
T Consensus        50 ~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           50 VGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             BCSSCSSHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHH
Confidence            49999999999988764

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=90.43  E-value=0.04  Score=40.20  Aligned_cols=17  Identities=12%  Similarity=0.020  Sum_probs=14.7

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|+.|+|||||++-+.+
T Consensus       373 vG~sGsGKSTll~~l~g  389 (578)
T 4a82_A          373 VGMSGGGKSTLINLIPR  389 (578)
T ss_dssp             ECSTTSSHHHHHTTTTT
T ss_pred             ECCCCChHHHHHHHHhc
Confidence            39999999999988774

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=90.42  E-value=0.045  Score=34.64  Aligned_cols=17  Identities=12%  Similarity=-0.072  Sum_probs=14.4

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|.+||||||+.+.+..
T Consensus        11 ~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A           11 IGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999887753

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=90.41  E-value=0.046  Score=35.66  Aligned_cols=22  Identities=9%  Similarity=-0.174  Sum_probs=16.6

Q ss_pred             ceeeeEeccCCCcceeeeeccc
Q psy2967          15 PTVGFNMRKITKGNVTIWPVPL   36 (101)
Q Consensus        15 ~~~g~~vG~~~vGKtsl~~~~~   36 (101)
                      |++-...|++|+||||+.+.+.
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la   30 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLA   30 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3333345999999999998876

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=90.39  E-value=0.051  Score=36.03  Aligned_cols=17  Identities=6%  Similarity=-0.167  Sum_probs=14.4

Q ss_pred             EeccCCCcceeeeeccc
Q psy2967          20 NMRKITKGNVTIWPVPL   36 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~   36 (101)
                      ..|.+||||||+.+.+.
T Consensus        80 I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           80 LTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             EEECTTSCHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHH
Confidence            35999999999988765

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=90.38  E-value=0.057  Score=36.88  Aligned_cols=24  Identities=17%  Similarity=0.158  Sum_probs=18.8

Q ss_pred             cceeeeEeccCCCcceeeeecccc
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      .|.+-+.+|+.|||||+|...+..
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEECCCccCHHHHHHHHHH
Confidence            444555679999999999988764

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=90.37  E-value=0.027  Score=38.07  Aligned_cols=17  Identities=6%  Similarity=-0.081  Sum_probs=15.1

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|++|+|||++++.+..
T Consensus        52 ~Gp~G~GKTtla~~la~   68 (340)
T 1sxj_C           52 YGPPGTGKTSTIVALAR   68 (340)
T ss_dssp             ECSSSSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999988765

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=90.37  E-value=0.045  Score=34.46  Aligned_cols=22  Identities=23%  Similarity=0.336  Sum_probs=17.0

Q ss_pred             ceeeeEeccCCCcceeeeecccc
Q psy2967          15 PTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        15 ~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      .++|+ .|.+||||||+.+.+..
T Consensus        13 ~iIgl-tG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           13 MVIGV-TGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             EEEEE-ECSTTSSHHHHHHHHHH
T ss_pred             eEEEE-ECCCCCCHHHHHHHHHH
Confidence            34554 59999999999888764

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=90.36  E-value=0.052  Score=33.11  Aligned_cols=17  Identities=12%  Similarity=-0.086  Sum_probs=14.4

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|.+|+||||+.+.+..
T Consensus        11 ~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A           11 TGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            48889999999888764

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.34  E-value=0.032  Score=39.33  Aligned_cols=23  Identities=9%  Similarity=0.017  Sum_probs=18.0

Q ss_pred             ceeeeEe-ccCCCcceeeeecccc
Q psy2967          15 PTVGFNM-RKITKGNVTIWPVPLS   37 (101)
Q Consensus        15 ~~~g~~v-G~~~vGKtsl~~~~~~   37 (101)
                      |..|+-+ |+||+|||.|++.+..
T Consensus       181 ~prGvLL~GPPGTGKTllAkAiA~  204 (405)
T 4b4t_J          181 QPKGVILYGPPGTGKTLLARAVAH  204 (405)
T ss_dssp             CCCCEEEESCSSSSHHHHHHHHHH
T ss_pred             CCCceEEeCCCCCCHHHHHHHHHH
Confidence            4456543 9999999999988764

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=90.33  E-value=0.028  Score=40.14  Aligned_cols=17  Identities=12%  Similarity=0.075  Sum_probs=14.4

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|+.|+|||||++-+.+
T Consensus       144 vGpnGsGKSTLlr~L~G  160 (460)
T 2npi_A          144 VGGSQTGKTSLSRTLCS  160 (460)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhC
Confidence            58889999999987664

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=90.31  E-value=0.045  Score=39.62  Aligned_cols=18  Identities=11%  Similarity=-0.152  Sum_probs=14.6

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      .+|..|||||||++.+..
T Consensus       298 LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          298 MVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             EECCTTSSHHHHHHHHHH
T ss_pred             EECCCcccHHHHHHHHHH
Confidence            358889999999987653

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=90.29  E-value=0.039  Score=36.24  Aligned_cols=17  Identities=12%  Similarity=-0.019  Sum_probs=14.5

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|++|+|||++++.+..
T Consensus        56 ~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           56 IGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999987653

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=90.23  E-value=0.035  Score=39.19  Aligned_cols=17  Identities=18%  Similarity=0.069  Sum_probs=15.1

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|+.|+||||+++.+.+
T Consensus       173 ~GpnGSGKTTlL~allg  189 (418)
T 1p9r_A          173 TGPTGSGKSTTLYAGLQ  189 (418)
T ss_dssp             ECSTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHh
Confidence            59999999999998875

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=90.20  E-value=0.044  Score=34.14  Aligned_cols=19  Identities=11%  Similarity=-0.069  Sum_probs=14.7

Q ss_pred             eeEeccCCCcceeeeeccc
Q psy2967          18 GFNMRKITKGNVTIWPVPL   36 (101)
Q Consensus        18 g~~vG~~~vGKtsl~~~~~   36 (101)
                      -+..|++|+|||+++.+..
T Consensus         6 ~vi~G~~gsGKTT~ll~~~   24 (184)
T 2orw_A            6 TVITGPMYSGKTTELLSFV   24 (184)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3446999999999986554

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=90.18  E-value=0.034  Score=36.72  Aligned_cols=16  Identities=13%  Similarity=-0.051  Sum_probs=13.6

Q ss_pred             eccCCCcceeeeeccc
Q psy2967          21 MRKITKGNVTIWPVPL   36 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~   36 (101)
                      .|++|+|||++++.+.
T Consensus        73 ~G~~GtGKT~la~~la   88 (309)
T 3syl_A           73 TGNPGTGKTTVALKMA   88 (309)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            4999999999997544

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=90.09  E-value=0.03  Score=39.72  Aligned_cols=18  Identities=6%  Similarity=-0.071  Sum_probs=15.4

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|++|+|||||++.+.+.
T Consensus       163 vG~sGsGKSTLl~~Iag~  180 (438)
T 2dpy_A          163 FAGSGVGKSVLLGMMARY  180 (438)
T ss_dssp             EECTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhcc
Confidence            488899999999888754

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=90.08  E-value=0.033  Score=33.63  Aligned_cols=23  Identities=4%  Similarity=-0.021  Sum_probs=16.8

Q ss_pred             cceeeeEeccCCCcceeeeecccc
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      +..+++ .|.+||||||+.+.+..
T Consensus         7 ~~~i~l-~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            7 MQHLVL-IGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             -CEEEE-ESCTTSSHHHHHHHHHH
T ss_pred             cceEEE-ECCCCCCHHHHHHHHHH
Confidence            334443 59999999999988764

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=89.97  E-value=0.038  Score=40.28  Aligned_cols=17  Identities=18%  Similarity=0.157  Sum_probs=14.9

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|+.|+|||||++-+.+
T Consensus       375 vG~sGsGKSTLl~~l~g  391 (582)
T 3b60_A          375 VGRSGSGKSTIASLITR  391 (582)
T ss_dssp             EECTTSSHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHhh
Confidence            38999999999998874

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=89.92  E-value=0.04  Score=37.68  Aligned_cols=17  Identities=12%  Similarity=0.290  Sum_probs=15.2

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|++|+|||+|++.+..
T Consensus        58 ~G~~G~GKT~L~~~~~~   74 (412)
T 1w5s_A           58 IGRVGIGKTTLAKFTVK   74 (412)
T ss_dssp             TTCCSSSHHHHHHHHHH
T ss_pred             cCcCCCCHHHHHHHHHH
Confidence            59999999999998874

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=89.86  E-value=0.045  Score=37.06  Aligned_cols=17  Identities=12%  Similarity=-0.085  Sum_probs=14.8

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|++|+|||++++.+..
T Consensus        76 ~GppGtGKT~la~~la~   92 (368)
T 3uk6_A           76 AGQPGTGKTAIAMGMAQ   92 (368)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999988764

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=89.79  E-value=0.062  Score=32.32  Aligned_cols=18  Identities=11%  Similarity=0.172  Sum_probs=14.4

Q ss_pred             eEeccCCCcceeeeeccc
Q psy2967          19 FNMRKITKGNVTIWPVPL   36 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~   36 (101)
                      +.+|+.|+|||+|+..+.
T Consensus        27 ~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           27 LIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEECCTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            335999999999987754

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=89.79  E-value=0.04  Score=35.94  Aligned_cols=17  Identities=18%  Similarity=0.011  Sum_probs=14.3

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|.+|+||||++..+..
T Consensus        33 eG~~GsGKsT~~~~l~~   49 (236)
T 3lv8_A           33 EGLEGAGKSTAIQVVVE   49 (236)
T ss_dssp             EESTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999888653

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=89.79  E-value=0.065  Score=36.65  Aligned_cols=23  Identities=17%  Similarity=0.160  Sum_probs=16.9

Q ss_pred             ceeeeEeccCCCcceeeeecccc
Q psy2967          15 PTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        15 ~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      +.+-+.+|++|||||+|...+..
T Consensus         5 ~~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            33444569999999999877653

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=89.74  E-value=0.038  Score=40.11  Aligned_cols=18  Identities=11%  Similarity=0.004  Sum_probs=15.3

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        53 vG~NGaGKSTLlk~l~Gl   70 (538)
T 1yqt_A           53 VGPNGTGKSTAVKILAGQ   70 (538)
T ss_dssp             ECCTTSSHHHHHHHHHTS
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            488899999999988753

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=89.72  E-value=0.063  Score=34.77  Aligned_cols=17  Identities=6%  Similarity=0.092  Sum_probs=14.3

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|.+|+||||+.+.+..
T Consensus        28 ~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           28 SGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999877654

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=89.69  E-value=0.047  Score=37.01  Aligned_cols=18  Identities=6%  Similarity=-0.023  Sum_probs=15.5

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      -.|++|+|||++++.+..
T Consensus        50 l~G~~G~GKT~la~~l~~   67 (384)
T 2qby_B           50 FLGLTGTGKTFVSKYIFN   67 (384)
T ss_dssp             EEECTTSSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            359999999999988874

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=89.62  E-value=0.047  Score=32.44  Aligned_cols=19  Identities=11%  Similarity=-0.286  Sum_probs=15.7

Q ss_pred             EeccCCCcceeeeeccccC
Q psy2967          20 NMRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~   38 (101)
                      -.|++|+|||++++.+...
T Consensus        29 l~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           29 LYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             EESSTTSSHHHHHHHHHHS
T ss_pred             EECCCCCCHHHHHHHHHHh
Confidence            3599999999999887653

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=89.60  E-value=0.048  Score=35.57  Aligned_cols=17  Identities=6%  Similarity=-0.079  Sum_probs=15.0

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|++|+|||++++.+..
T Consensus        70 ~G~~GtGKT~la~~ia~   86 (272)
T 1d2n_A           70 EGPPHSGKTALAAKIAE   86 (272)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHH
Confidence            49999999999988765

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=89.57  E-value=0.048  Score=39.96  Aligned_cols=17  Identities=18%  Similarity=0.216  Sum_probs=14.7

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|+.|+|||||++-+.+
T Consensus       387 vG~sGsGKSTll~~l~g  403 (598)
T 3qf4_B          387 VGPTGSGKTTIVNLLMR  403 (598)
T ss_dssp             ECCTTSSTTHHHHHHTT
T ss_pred             ECCCCCcHHHHHHHHhc
Confidence            48999999999988774

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=89.56  E-value=0.043  Score=39.86  Aligned_cols=18  Identities=17%  Similarity=0.193  Sum_probs=15.6

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        31 iGpNGaGKSTLlkiL~Gl   48 (538)
T 3ozx_A           31 LGKNGVGKTTVLKILAGE   48 (538)
T ss_dssp             ECCTTSSHHHHHHHHTTS
T ss_pred             ECCCCCcHHHHHHHHhcC
Confidence            588899999999988863

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=89.55  E-value=0.035  Score=38.70  Aligned_cols=17  Identities=24%  Similarity=0.247  Sum_probs=14.5

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|++|+|||||++.+..
T Consensus       175 ~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          175 KGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHh
Confidence            59999999999987653

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=89.55  E-value=0.04  Score=36.21  Aligned_cols=17  Identities=12%  Similarity=0.167  Sum_probs=14.4

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|.+|+||||+.+.+..
T Consensus        54 ~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           54 VGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             ECSTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            58899999999888754

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=89.54  E-value=0.049  Score=36.30  Aligned_cols=17  Identities=6%  Similarity=-0.122  Sum_probs=14.9

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|++|+|||+|++.+..
T Consensus        55 ~Gp~GtGKT~la~ala~   71 (301)
T 3cf0_A           55 YGPPGCGKTLLAKAIAN   71 (301)
T ss_dssp             ECSSSSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHH
Confidence            49999999999988774

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=89.39  E-value=0.04  Score=38.68  Aligned_cols=16  Identities=6%  Similarity=0.133  Sum_probs=14.1

Q ss_pred             eccCCCcceeeeeccc
Q psy2967          21 MRKITKGNVTIWPVPL   36 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~   36 (101)
                      +|++|+|||+|+..++
T Consensus       184 ~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          184 FGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             EcCCCCChHHHHHHHH
Confidence            4889999999999775

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=89.35  E-value=0.045  Score=39.94  Aligned_cols=17  Identities=18%  Similarity=0.108  Sum_probs=14.9

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|+.|+|||||++-+.+
T Consensus       375 vG~sGsGKSTll~~l~g  391 (582)
T 3b5x_A          375 VGRSGSGKSTIANLFTR  391 (582)
T ss_pred             ECCCCCCHHHHHHHHhc
Confidence            48899999999998874

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.34  E-value=0.044  Score=39.31  Aligned_cols=23  Identities=13%  Similarity=0.099  Sum_probs=18.2

Q ss_pred             ceeeeEe-ccCCCcceeeeecccc
Q psy2967          15 PTVGFNM-RKITKGNVTIWPVPLS   37 (101)
Q Consensus        15 ~~~g~~v-G~~~vGKtsl~~~~~~   37 (101)
                      |..|+-+ |+||+|||.|++.+..
T Consensus       242 pprGILLyGPPGTGKTlLAkAiA~  265 (467)
T 4b4t_H          242 PPKGILLYGPPGTGKTLCARAVAN  265 (467)
T ss_dssp             CCSEEEECSCTTSSHHHHHHHHHH
T ss_pred             CCCceEeeCCCCCcHHHHHHHHHh
Confidence            5566554 9999999999988764

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=89.31  E-value=0.033  Score=37.33  Aligned_cols=17  Identities=6%  Similarity=-0.087  Sum_probs=14.8

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|++|+|||++++.+..
T Consensus        64 ~G~~G~GKT~la~~la~   80 (353)
T 1sxj_D           64 YGPPGTGKTSTILALTK   80 (353)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999988764

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=89.28  E-value=0.068  Score=34.34  Aligned_cols=17  Identities=6%  Similarity=-0.156  Sum_probs=14.4

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|++|+|||+|...+..
T Consensus        40 ~GpsGsGKStLA~~La~   56 (205)
T 2qmh_A           40 TGDSGVGKSETALELVQ   56 (205)
T ss_dssp             ECCCTTTTHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999877764

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=89.22  E-value=0.038  Score=39.75  Aligned_cols=17  Identities=12%  Similarity=-0.075  Sum_probs=14.3

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|+.|+|||||++.+.+
T Consensus        35 iG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           35 SGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHhc
Confidence            58899999999987654

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=89.19  E-value=0.044  Score=36.18  Aligned_cols=17  Identities=6%  Similarity=0.028  Sum_probs=14.7

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|++|+|||++++.+..
T Consensus        53 ~G~~GtGKt~la~~la~   69 (311)
T 4fcw_A           53 LGPTGVGKTELAKTLAA   69 (311)
T ss_dssp             ESCSSSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHH
Confidence            59999999999987664

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=89.15  E-value=0.062  Score=34.07  Aligned_cols=23  Identities=4%  Similarity=-0.070  Sum_probs=18.2

Q ss_pred             ccceeeeEeccCCCcceeeeecc
Q psy2967          13 MIPTVGFNMRKITKGNVTIWPVP   35 (101)
Q Consensus        13 ~~~~~g~~vG~~~vGKtsl~~~~   35 (101)
                      .++++-+..|.+|+|||+++..+
T Consensus         3 ~~~mi~l~tG~pGsGKT~~a~~~   25 (199)
T 2r2a_A            3 AMAEICLITGTPGSGKTLKMVSM   25 (199)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHH
T ss_pred             cceeEEEEEeCCCCCHHHHHHHH
Confidence            45677777899999999987664

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=89.13  E-value=0.068  Score=36.59  Aligned_cols=19  Identities=5%  Similarity=-0.116  Sum_probs=16.1

Q ss_pred             eEeccCCCcceeeeecccc
Q psy2967          19 FNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~   37 (101)
                      +.+|+.|||||+|..++..
T Consensus         7 ~i~GptgsGKt~la~~La~   25 (322)
T 3exa_A            7 AIVGPTAVGKTKTSVMLAK   25 (322)
T ss_dssp             EEECCTTSCHHHHHHHHHH
T ss_pred             EEECCCcCCHHHHHHHHHH
Confidence            3469999999999988874

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=89.11  E-value=0.074  Score=34.12  Aligned_cols=17  Identities=18%  Similarity=0.114  Sum_probs=14.3

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|..|+||||+++.+..
T Consensus         8 ~G~~g~GKtt~~~~l~~   24 (241)
T 2ocp_A            8 EGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            38899999999888764

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=89.09  E-value=0.046  Score=39.33  Aligned_cols=15  Identities=7%  Similarity=-0.201  Sum_probs=13.5

Q ss_pred             eccCCCcceeeeecc
Q psy2967          21 MRKITKGNVTIWPVP   35 (101)
Q Consensus        21 vG~~~vGKtsl~~~~   35 (101)
                      +|++|+|||||++.|
T Consensus        45 ~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           45 SGTSGTGKTLFSIQF   59 (525)
T ss_dssp             EESTTSSHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHH
Confidence            588899999999995

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=89.02  E-value=0.077  Score=35.88  Aligned_cols=21  Identities=14%  Similarity=-0.096  Sum_probs=15.9

Q ss_pred             eeeEeccCCCcceeeeecccc
Q psy2967          17 VGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        17 ~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      +-..+|++|+||||++..+..
T Consensus       106 vi~ivG~~GsGKTTl~~~LA~  126 (306)
T 1vma_A          106 VIMVVGVNGTGKTTSCGKLAK  126 (306)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCChHHHHHHHHHH
Confidence            334468899999999877653

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=89.00  E-value=0.077  Score=36.70  Aligned_cols=21  Identities=10%  Similarity=-0.121  Sum_probs=16.5

Q ss_pred             eeeeEeccCCCcceeeeeccc
Q psy2967          16 TVGFNMRKITKGNVTIWPVPL   36 (101)
Q Consensus        16 ~~g~~vG~~~vGKtsl~~~~~   36 (101)
                      ..-+.+|.+++|||||++++.
T Consensus        34 ~killlG~~~SGKST~~kq~~   54 (362)
T 1zcb_A           34 VKILLLGAGESGKSTFLKQMR   54 (362)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHH
Confidence            344556999999999998863

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=88.99  E-value=0.057  Score=39.52  Aligned_cols=17  Identities=12%  Similarity=0.157  Sum_probs=14.7

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|+.|+|||||++-+.+
T Consensus       375 vG~sGsGKSTll~~l~g  391 (587)
T 3qf4_A          375 LGETGSGKSTLMNLIPR  391 (587)
T ss_dssp             ECSSSSSHHHHHHTTTT
T ss_pred             ECCCCCCHHHHHHHHhC
Confidence            39999999999988774

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=88.98  E-value=0.074  Score=36.63  Aligned_cols=18  Identities=6%  Similarity=-0.058  Sum_probs=15.0

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      .+|++|||||+|..++..
T Consensus        12 I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A           12 IVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EECSTTSSHHHHHHHHHH
T ss_pred             EECCCcCcHHHHHHHHHH
Confidence            469999999999887664

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=88.96  E-value=0.064  Score=34.07  Aligned_cols=17  Identities=12%  Similarity=-0.019  Sum_probs=14.5

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|+||+|||+|+.+++.
T Consensus        36 ~G~pG~GKT~l~l~~~~   52 (251)
T 2zts_A           36 TGGTGTGKTTFAAQFIY   52 (251)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHH
Confidence            49999999999988753

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=88.93  E-value=0.062  Score=38.20  Aligned_cols=18  Identities=11%  Similarity=-0.079  Sum_probs=15.1

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      -+|++|+|||++++.+..
T Consensus       206 L~G~pG~GKT~la~~la~  223 (468)
T 3pxg_A          206 LIGEPGVGKTAIAEGLAQ  223 (468)
T ss_dssp             EESCTTTTTHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            359999999999987664

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=88.89  E-value=0.048  Score=40.26  Aligned_cols=18  Identities=11%  Similarity=0.010  Sum_probs=15.4

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus       109 vGpNGaGKSTLLkiL~Gl  126 (608)
T 3j16_B          109 VGTNGIGKSTALKILAGK  126 (608)
T ss_dssp             ECCTTSSHHHHHHHHHTS
T ss_pred             ECCCCChHHHHHHHHhcC
Confidence            588899999999988753

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=88.88  E-value=0.062  Score=35.64  Aligned_cols=17  Identities=18%  Similarity=0.034  Sum_probs=14.5

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|++|+|||++++.+..
T Consensus        44 ~G~~GtGKT~la~~i~~   60 (324)
T 1hqc_A           44 FGPPGLGKTTLAHVIAH   60 (324)
T ss_dssp             ECCTTCCCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999987653

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=88.86  E-value=0.019  Score=37.33  Aligned_cols=17  Identities=12%  Similarity=-0.009  Sum_probs=14.2

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|+.|+|||||++.+..
T Consensus        33 ~GpnGsGKSTll~~i~g   49 (227)
T 1qhl_A           33 SGGNGAGKSTTMAAFVT   49 (227)
T ss_dssp             HSCCSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhc
Confidence            48899999999987654

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=88.79  E-value=0.06  Score=36.08  Aligned_cols=18  Identities=11%  Similarity=-0.097  Sum_probs=15.3

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      -.|++|+|||++++.+..
T Consensus        60 l~G~~GtGKT~la~~ia~   77 (338)
T 3pfi_A           60 FSGPAGLGKTTLANIISY   77 (338)
T ss_dssp             EECSTTSSHHHHHHHHHH
T ss_pred             EECcCCCCHHHHHHHHHH
Confidence            359999999999988764

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=88.70  E-value=0.088  Score=36.09  Aligned_cols=16  Identities=13%  Similarity=0.038  Sum_probs=14.3

Q ss_pred             ccCCCcceeeeecccc
Q psy2967          22 RKITKGNVTIWPVPLS   37 (101)
Q Consensus        22 G~~~vGKtsl~~~~~~   37 (101)
                      |..||||||+++.+..
T Consensus        11 G~dGsGKTT~~~~La~   26 (331)
T 1e2k_A           11 GPHGMGKTTTTQLLVA   26 (331)
T ss_dssp             SCTTSSHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            8899999999988775

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=88.65  E-value=0.063  Score=33.72  Aligned_cols=20  Identities=5%  Similarity=-0.044  Sum_probs=16.9

Q ss_pred             eEeccCCCcceeeeeccccC
Q psy2967          19 FNMRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~   38 (101)
                      +.+|.+++|||++..++...
T Consensus         3 lV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            3 LVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEECTTSSHHHHHHHHHCS
T ss_pred             EEECCCCCcHHHHHHHHHhc
Confidence            45699999999999998854

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=88.60  E-value=0.073  Score=36.41  Aligned_cols=17  Identities=6%  Similarity=-0.070  Sum_probs=14.8

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|++|+|||+|++.+..
T Consensus        90 ~GppGtGKT~la~ala~  106 (355)
T 2qp9_X           90 YGPPGTGKSYLAKAVAT  106 (355)
T ss_dssp             ECSTTSCHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHH
Confidence            49999999999988764

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=88.59  E-value=0.078  Score=37.43  Aligned_cols=23  Identities=13%  Similarity=0.072  Sum_probs=17.5

Q ss_pred             ceeeeE-eccCCCcceeeeecccc
Q psy2967          15 PTVGFN-MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        15 ~~~g~~-vG~~~vGKtsl~~~~~~   37 (101)
                      |..++- .|++|+|||+|++.+..
T Consensus       166 ~~~~vLL~GppGtGKT~lA~aia~  189 (444)
T 2zan_A          166 PWRGILLFGPPGTGKSYLAKAVAT  189 (444)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            434544 49999999999988774

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=88.53  E-value=0.081  Score=37.70  Aligned_cols=22  Identities=18%  Similarity=0.093  Sum_probs=17.5

Q ss_pred             ceeeeEeccCCCcceeeeeccc
Q psy2967          15 PTVGFNMRKITKGNVTIWPVPL   36 (101)
Q Consensus        15 ~~~g~~vG~~~vGKtsl~~~~~   36 (101)
                      |.+-+.+|.+||||||++..+.
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA  121 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLA  121 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHH
Confidence            5555567999999999987765

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=88.53  E-value=0.071  Score=37.84  Aligned_cols=22  Identities=14%  Similarity=-0.035  Sum_probs=16.8

Q ss_pred             ceeeeEeccCCCcceeeeeccc
Q psy2967          15 PTVGFNMRKITKGNVTIWPVPL   36 (101)
Q Consensus        15 ~~~g~~vG~~~vGKtsl~~~~~   36 (101)
                      |.+-+.+|.+||||||++..+.
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA  118 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLA  118 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4444456999999999987765

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=88.47  E-value=0.058  Score=39.79  Aligned_cols=18  Identities=11%  Similarity=0.023  Sum_probs=15.4

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus       123 iG~NGsGKSTLlkiL~Gl  140 (607)
T 3bk7_A          123 VGPNGTGKTTAVKILAGQ  140 (607)
T ss_dssp             ECCTTSSHHHHHHHHTTS
T ss_pred             ECCCCChHHHHHHHHhCC
Confidence            488899999999988763

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=88.36  E-value=0.078  Score=37.54  Aligned_cols=18  Identities=11%  Similarity=-0.123  Sum_probs=14.9

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      .+|.+||||||++..+..
T Consensus       104 ivG~~GvGKTTla~~La~  121 (432)
T 2v3c_C          104 LVGIQGSGKTTTAAKLAR  121 (432)
T ss_dssp             EECCSSSSTTHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            468899999999887664

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=88.18  E-value=0.062  Score=39.07  Aligned_cols=18  Identities=11%  Similarity=0.073  Sum_probs=15.5

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++.+.+-
T Consensus       300 ~G~nGsGKSTLl~~l~Gl  317 (538)
T 3ozx_A          300 LGPNGIGKTTFARILVGE  317 (538)
T ss_dssp             ECCTTSSHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            488899999999998863

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.04  E-value=0.06  Score=38.33  Aligned_cols=23  Identities=13%  Similarity=0.109  Sum_probs=17.7

Q ss_pred             ceeeeE-eccCCCcceeeeecccc
Q psy2967          15 PTVGFN-MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        15 ~~~g~~-vG~~~vGKtsl~~~~~~   37 (101)
                      |..|+- .|+||+|||+|++.+..
T Consensus       215 ~prGvLLyGPPGTGKTlLAkAiA~  238 (437)
T 4b4t_I          215 PPKGVILYGAPGTGKTLLAKAVAN  238 (437)
T ss_dssp             CCSEEEEESSTTTTHHHHHHHHHH
T ss_pred             CCCCCceECCCCchHHHHHHHHHH
Confidence            345654 39999999999988764

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=87.85  E-value=0.098  Score=36.52  Aligned_cols=16  Identities=13%  Similarity=0.038  Sum_probs=14.5

Q ss_pred             ccCCCcceeeeecccc
Q psy2967          22 RKITKGNVTIWPVPLS   37 (101)
Q Consensus        22 G~~~vGKtsl~~~~~~   37 (101)
                      |..||||||+++.+..
T Consensus        56 G~dGsGKTT~~~~Lae   71 (376)
T 1of1_A           56 GPHGMGKTTTTQLLVA   71 (376)
T ss_dssp             SSTTSSHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            9999999999988775

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=87.80  E-value=0.076  Score=37.45  Aligned_cols=17  Identities=6%  Similarity=-0.007  Sum_probs=14.9

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|++|+|||+|++.+..
T Consensus       136 ~Gp~G~GKTtLa~aia~  152 (440)
T 2z4s_A          136 YGGVGLGKTHLLQSIGN  152 (440)
T ss_dssp             ECSSSSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999988764

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=87.79  E-value=0.1  Score=32.89  Aligned_cols=18  Identities=11%  Similarity=0.172  Sum_probs=14.3

Q ss_pred             eEeccCCCcceeeeeccc
Q psy2967          19 FNMRKITKGNVTIWPVPL   36 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~   36 (101)
                      +-+|+.|+||||++..+.
T Consensus        27 ~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           27 LIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEECCTTSSHHHHHHHHH
T ss_pred             EEEcCCCCCHHHHHHHHH
Confidence            335999999999987753

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=87.76  E-value=0.088  Score=35.31  Aligned_cols=16  Identities=13%  Similarity=0.050  Sum_probs=13.7

Q ss_pred             eccCCCcceeeeeccc
Q psy2967          21 MRKITKGNVTIWPVPL   36 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~   36 (101)
                      +|..|+||||++..+.
T Consensus       111 vG~~GsGKTTl~~~LA  126 (296)
T 2px0_A          111 FGSTGAGKTTTLAKLA  126 (296)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5889999999987765

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=87.65  E-value=0.046  Score=35.31  Aligned_cols=16  Identities=6%  Similarity=-0.114  Sum_probs=12.7

Q ss_pred             eccCCCcceeeeeccc
Q psy2967          21 MRKITKGNVTIWPVPL   36 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~   36 (101)
                      .|+||+|||+++..+.
T Consensus        64 ~GPPGtGKTt~a~ala   79 (212)
T 1tue_A           64 CGPANTGKSYFGMSFI   79 (212)
T ss_dssp             ESCGGGCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            4999999997765544

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=87.65  E-value=0.066  Score=38.85  Aligned_cols=16  Identities=6%  Similarity=-0.101  Sum_probs=13.9

Q ss_pred             eccCCCcceeeeeccc
Q psy2967          21 MRKITKGNVTIWPVPL   36 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~   36 (101)
                      +|++|+|||+|++.+.
T Consensus       114 ~Gp~GtGKTtlar~ia  129 (543)
T 3m6a_A          114 AGPPGVGKTSLAKSIA  129 (543)
T ss_dssp             ESSSSSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999987765

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=87.63  E-value=0.11  Score=37.64  Aligned_cols=23  Identities=22%  Similarity=0.069  Sum_probs=17.8

Q ss_pred             cceeeeEeccCCCcceeeeeccc
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPL   36 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~   36 (101)
                      .|.+-+.+|.+|+||||+.+++.
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La   56 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLT   56 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            34555567999999999988764

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=87.61  E-value=0.079  Score=36.22  Aligned_cols=17  Identities=6%  Similarity=0.016  Sum_probs=14.7

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|++|+|||++++.+..
T Consensus        78 ~Gp~GtGKT~la~~la~   94 (376)
T 1um8_A           78 IGPTGSGKTLMAQTLAK   94 (376)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999987764

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=87.47  E-value=0.091  Score=36.19  Aligned_cols=16  Identities=6%  Similarity=0.030  Sum_probs=13.8

Q ss_pred             eccCCCcceeeeeccc
Q psy2967          21 MRKITKGNVTIWPVPL   36 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~   36 (101)
                      +|+.|+|||||+..+.
T Consensus        29 ~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           29 EGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999998754

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=87.47  E-value=0.065  Score=35.88  Aligned_cols=17  Identities=12%  Similarity=0.003  Sum_probs=14.6

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|++|+|||++++.+..
T Consensus        51 ~G~~GtGKT~la~~la~   67 (350)
T 1g8p_A           51 FGDRGTGKSTAVRALAA   67 (350)
T ss_dssp             ECCGGGCTTHHHHHHHH
T ss_pred             ECCCCccHHHHHHHHHH
Confidence            49999999999988764

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=87.36  E-value=0.084  Score=35.62  Aligned_cols=19  Identities=11%  Similarity=-0.029  Sum_probs=15.7

Q ss_pred             eEeccCCCcceeeeecccc
Q psy2967          19 FNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~   37 (101)
                      +-.|++|+|||++++.+..
T Consensus        42 ll~G~~G~GKT~la~~la~   60 (373)
T 1jr3_A           42 LFSGTRGVGKTSIARLLAK   60 (373)
T ss_dssp             EEESCTTSSHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            3459999999999988764

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=87.14  E-value=0.085  Score=39.08  Aligned_cols=15  Identities=13%  Similarity=-0.033  Sum_probs=12.5

Q ss_pred             eccCCCcceeeeecc
Q psy2967          21 MRKITKGNVTIWPVP   35 (101)
Q Consensus        21 vG~~~vGKtsl~~~~   35 (101)
                      +|+.|+|||||++-+
T Consensus       354 iGpnGsGKSTLl~~i  368 (670)
T 3ux8_A          354 TGVSGSGKSTLVNEV  368 (670)
T ss_dssp             ECSTTSSHHHHHTTT
T ss_pred             EeeCCCCHHHHHHHH
Confidence            388999999999643

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=87.10  E-value=0.088  Score=35.97  Aligned_cols=17  Identities=18%  Similarity=0.008  Sum_probs=14.8

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|++|+|||+|++.+..
T Consensus       123 ~GppGtGKT~la~aia~  139 (357)
T 3d8b_A          123 FGPPGTGKTLIGKCIAS  139 (357)
T ss_dssp             ESSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999988764

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=87.09  E-value=0.11  Score=35.82  Aligned_cols=17  Identities=6%  Similarity=0.016  Sum_probs=14.9

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|++|+|||+|++.+..
T Consensus       154 ~GppGtGKT~la~aia~  170 (389)
T 3vfd_A          154 FGPPGNGKTMLAKAVAA  170 (389)
T ss_dssp             ESSTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999988764

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=87.05  E-value=0.099  Score=35.19  Aligned_cols=18  Identities=6%  Similarity=-0.008  Sum_probs=15.2

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      .|.||+|||+|+..+..+
T Consensus        74 ~G~pG~GKTtl~l~ia~~   91 (315)
T 3bh0_A           74 AARPSMGKTAFALKQAKN   91 (315)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHHH
Confidence            499999999999887743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	101
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	8e-06
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	2e-05
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	2e-04
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	3e-04
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	0.002
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	0.003

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (92), Expect = 8e-06
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)

Query: 36 LSGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSI 76
          +  +F+   I T+G + +     I    V +++WD  GQ RFR+I
Sbjct: 23 VEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI 67

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (90), Expect = 2e-05
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 4/45 (8%)

Query: 36 LSGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSI 76
              ++ D I T+G + +    ++    V +++WD  GQ RFR+I
Sbjct: 27 SDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI 71

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.9 bits (82), Expect = 2e-04
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 36 LSGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSIYMVDAADTD 85
              F+   I T+G + +    ++    + +++WD  GQ RFR+I         
Sbjct: 27 SEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 80

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 3e-04
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 36 LSGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSI 76
            G F      T+G +      +I    V +++WD  GQ RFRSI
Sbjct: 26 TQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSI 70

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 33.3 bits (75), Expect = 0.002
 Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 36 LSGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSI 76
              F+   + TVG + +          + +++WD  GQ R+R+I
Sbjct: 26 ADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTI 70

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 32.8 bits (74), Expect = 0.003
 Identities = 9/38 (23%), Positives = 15/38 (39%)

Query: 40 FSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSIY 77
              ++ T G    K     V   ++D+GGQ   R  +
Sbjct: 27 RILHVVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKW 64

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	101
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.85
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.85
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.83
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.83
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.82
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.82
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.82
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.81
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.81
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.81
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.81
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.8
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.8
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.8
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.8
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.79
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.79
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.78
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.78
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.77
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.77
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.77
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.76
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.75
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.75
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.75
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.73
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.72
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.72
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.72
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.69
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.65
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.65
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.62
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.61
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.6
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.52
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.51
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.44
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.39
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.37
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.32
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.24
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.22
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.06
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	98.89
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	98.84
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	98.63
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	98.57
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	98.57
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	98.45
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	98.35
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	98.35
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.34
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	98.3
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	98.24
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	98.11
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	98.08
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	98.01
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	97.91
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	97.88
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	97.84
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.71
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	97.63
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	97.63
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	97.61
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	97.55
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	97.55
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	97.48
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	97.46
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.32
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	97.22
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	97.15
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	97.14
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	97.08
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.85
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.76
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	96.6
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.55
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.48
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.48
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.4
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.33
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.29
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.29
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	96.2
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.06
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.04
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.04
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	95.96
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	95.94
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	95.91
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	95.73
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	95.66
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	95.65
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	95.56
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	95.54
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	95.45
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	95.37
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	95.15
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.15
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	95.12
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	95.11
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	95.0
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	94.96
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	94.96
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	94.93
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	94.85
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	94.83
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	94.78
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	94.76
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.74
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	94.73
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	94.65
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	94.65
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	94.64
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	94.61
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	94.54
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	94.52
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	94.47
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	94.33
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	94.32
d2awna2	232	Maltose transport protein MalK, N-terminal domain	94.3
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	94.26
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	94.26
d1j8yf2	211	GTPase domain of the signal sequence recognition p	94.25
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	94.22
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	94.21
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	94.19
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	94.17
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	94.17
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	94.14
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	94.1
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	94.09
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	94.06
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	93.99
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	93.98
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	93.96
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	93.9
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	93.89
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	93.89
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	93.85
d1g2912	240	Maltose transport protein MalK, N-terminal domain	93.83
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	93.83
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	93.74
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	93.7
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	93.69
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	93.61
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	93.53
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.5
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	93.5
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	93.5
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	93.45
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	93.39
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	93.38
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	93.37
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	93.35
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	93.26
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	93.25
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	93.13
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	93.02
d2qy9a2	211	GTPase domain of the signal recognition particle r	92.93
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	92.93
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	92.92
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	92.92
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	92.91
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	92.9
d1vmaa2	213	GTPase domain of the signal recognition particle r	92.85
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	92.82
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	92.7
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	92.69
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	92.65
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	92.63
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	92.61
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	92.49
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	92.26
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	92.21
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	92.16
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	91.72
d1okkd2	207	GTPase domain of the signal recognition particle r	91.72
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	91.66
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	91.59
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	91.54
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	91.52
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	91.07
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	90.99
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	90.89
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	90.74
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	90.74
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	90.57
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	90.51
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	90.31
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	90.26
d1ls1a2	207	GTPase domain of the signal sequence recognition p	90.14
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	90.03
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	89.98
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	89.76
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	89.47
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	89.43
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	89.41
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	89.35
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	89.26
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	88.65
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	88.44
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	88.42
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	88.38
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	88.22
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	88.16
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	88.07
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	88.04
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	87.64
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	87.04
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	87.02
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	87.01
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	86.58
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	86.52
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	86.24
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	86.15
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	84.76
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	83.85
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	83.68
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	82.73
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	82.23
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	81.69

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.85  E-value=5.5e-22  Score=122.89  Aligned_cols=87  Identities=16%  Similarity=0.240  Sum_probs=74.3

Q ss_pred             ccceeeeEe-ccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------E
Q psy2967          13 MIPTVGFNM-RKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------I   76 (101)
Q Consensus        13 ~~~~~g~~v-G~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i   76 (101)
                      .+|+..+.+ |+++||||||++||+.++|.+++.||++.++..   +++..+.+.+||++|++++..            +
T Consensus         1 ~~~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~i   80 (168)
T d1u8za_           1 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   80 (168)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred             CCceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeE
Confidence            378888774 999999999999999999999999999987643   556679999999999998765            9


Q ss_pred             EEEECCChhhHHHHHHHHHHHHH
Q psy2967          77 YMVDAADTDKLEASRNELHALIE   99 (101)
Q Consensus        77 ~v~d~~~~~sf~~~~~~~~~i~~   99 (101)
                      +|||++|++||+++..|++++++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~  103 (168)
T d1u8za_          81 CVFSITEMESFAATADFREQILR  103 (168)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHH
T ss_pred             EEeeccchhhhhhHHHHHHHHHH
Confidence            99999999999999999998875

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=1e-21  Score=121.79  Aligned_cols=87  Identities=18%  Similarity=0.217  Sum_probs=75.6

Q ss_pred             cceeeeE-eccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EE
Q psy2967          14 IPTVGFN-MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IY   77 (101)
Q Consensus        14 ~~~~g~~-vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~   77 (101)
                      +|++.+. +|+++||||||+++|.++++.+.+.||++..+..   ++...+.+.+||++|++++..            ++
T Consensus         2 ~pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ll   81 (169)
T d1x1ra1           2 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI   81 (169)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEE
Confidence            5777766 4999999999999999999999999999866533   456679999999999998866            99


Q ss_pred             EEECCChhhHHHHHHHHHHHHHh
Q psy2967          78 MVDAADTDKLEASRNELHALIEK  100 (101)
Q Consensus        78 v~d~~~~~sf~~~~~~~~~i~~~  100 (101)
                      |||++|++||+++..|+.++.+.
T Consensus        82 v~d~~d~~Sf~~~~~~~~~i~~~  104 (169)
T d1x1ra1          82 VYSVTDKASFEHVDRFHQLILRV  104 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH
T ss_pred             ecccccchhhhccchhhHHHHhh
Confidence            99999999999999999988653

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2e-21  Score=122.39  Aligned_cols=81  Identities=16%  Similarity=0.220  Sum_probs=69.4

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      +.+|++|||||||++||+.++|.+++.||++..+..   +.++.+.+.+||++|+++++.            ++|||+++
T Consensus         7 vllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~   86 (191)
T d2ngra_           7 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS   86 (191)
T ss_dssp             EEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC
T ss_pred             EEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecccccch
Confidence            346999999999999999999999999999976543   455678999999999998876            99999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      ++||+++..|+.+..+
T Consensus        87 ~~Sf~~~~~~~~~~~~  102 (191)
T d2ngra_          87 PSSFENVKEKWVPEIT  102 (191)
T ss_dssp             HHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999876655543

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=4.6e-21  Score=118.52  Aligned_cols=81  Identities=23%  Similarity=0.430  Sum_probs=70.4

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--EE--ecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KI--TKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|++|||||||++||+.++|.+.+.||.+.++.  .+  .+..+.+.+||++|++++..            ++|||++
T Consensus         7 ~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~   86 (170)
T d1ek0a_           7 VLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVT   86 (170)
T ss_dssp             EEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETT
T ss_pred             EEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEEEeCC
Confidence            34699999999999999999999999999997764  23  45568999999999998765            9999999


Q ss_pred             ChhhHHHHHHHHHHHHH
Q psy2967          83 DTDKLEASRNELHALIE   99 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~   99 (101)
                      ++.||+++..|+.++.+
T Consensus        87 ~~~s~~~~~~~~~~~~~  103 (170)
T d1ek0a_          87 KPQSFIKARHWVKELHE  103 (170)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhhhhhhcc
Confidence            99999999999887654

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.3e-21  Score=121.41  Aligned_cols=82  Identities=23%  Similarity=0.423  Sum_probs=66.7

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|+++||||||+++|..++|.+.+.||++.++..    .++..+.+.+||++|+++++.            ++|||++
T Consensus         7 ~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~   86 (170)
T d1i2ma_           7 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVT   86 (170)
T ss_dssp             EEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEEEETT
T ss_pred             EEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhccccc
Confidence            346999999999999999999999999999987643    345679999999999987665            9999999


Q ss_pred             ChhhHHHHHHHHHHHHHh
Q psy2967          83 DTDKLEASRNELHALIEK  100 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~~  100 (101)
                      +++||+++..|+.++.++
T Consensus        87 ~~~Sf~~~~~~~~~~~~~  104 (170)
T d1i2ma_          87 SRVTYKNVPNWHRDLVRV  104 (170)
T ss_dssp             SGGGGTTHHHHHHHHHHH
T ss_pred             cccccchhHHHHHHHhhc
Confidence            999999999999887653

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=3.3e-21  Score=118.67  Aligned_cols=86  Identities=17%  Similarity=0.349  Sum_probs=73.2

Q ss_pred             ceeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEE
Q psy2967          15 PTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYM   78 (101)
Q Consensus        15 ~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v   78 (101)
                      ++.-+.+|++|||||||++||..++|.+++.||++.+...    ..+..+.+.+||++|++++..            ++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            3444557999999999999999999999999999866543    345568999999999988766            899


Q ss_pred             EECCChhhHHHHHHHHHHHHHh
Q psy2967          79 VDAADTDKLEASRNELHALIEK  100 (101)
Q Consensus        79 ~d~~~~~sf~~~~~~~~~i~~~  100 (101)
                      ||+++++||+++..|++++.++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~  103 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAE  103 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHH
T ss_pred             Eeccchhhhhhccccccccccc
Confidence            9999999999999999988753

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=4.6e-21  Score=120.29  Aligned_cols=85  Identities=11%  Similarity=0.164  Sum_probs=69.7

Q ss_pred             ceeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEE
Q psy2967          15 PTVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMV   79 (101)
Q Consensus        15 ~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~   79 (101)
                      .+.-+.+|++|||||||++||+.++|.+++.||++.....   ..+..+.+.+||++|+++++.            ++||
T Consensus         9 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~ilv~   88 (185)
T d2atxa1           9 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   88 (185)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhcccccceeeecc
Confidence            3333446999999999999999999999999999855432   446679999999999998766            9999


Q ss_pred             ECCChhhHHHHHHHHHHHHH
Q psy2967          80 DAADTDKLEASRNELHALIE   99 (101)
Q Consensus        80 d~~~~~sf~~~~~~~~~i~~   99 (101)
                      |+++++||+++..|..+.++
T Consensus        89 d~t~~~Sf~~~~~~~~~~~~  108 (185)
T d2atxa1          89 SVVNPASFQNVKEEWVPELK  108 (185)
T ss_dssp             ETTCHHHHHHHHHTHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHH
Confidence            99999999998766655543

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.1e-20  Score=116.46  Aligned_cols=81  Identities=16%  Similarity=0.233  Sum_probs=71.8

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      .+|++|||||||+++|+.+.|.+.+.||++.++..   +++..+.+.+||++|++++..            ++|||++++
T Consensus         9 liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~   88 (167)
T d1xtqa1           9 ILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSI   88 (167)
T ss_dssp             EEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEEEEETTCH
T ss_pred             EECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhhhcccchh
Confidence            36999999999999999999999999999987642   556679999999999988765            999999999


Q ss_pred             hhHHHHHHHHHHHHHh
Q psy2967          85 DKLEASRNELHALIEK  100 (101)
Q Consensus        85 ~sf~~~~~~~~~i~~~  100 (101)
                      +||+++..|+.++.++
T Consensus        89 ~s~~~~~~~~~~i~~~  104 (167)
T d1xtqa1          89 KSFEVIKVIHGKLLDM  104 (167)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhhc
Confidence            9999999999988754

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=8.1e-21  Score=118.16  Aligned_cols=81  Identities=19%  Similarity=0.284  Sum_probs=69.2

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE---EEecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      +.+|++|||||||+++|..+.|.+.+.||++....   .+..+.+.+.+||++|++.++.            |+|||+++
T Consensus         6 vvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~   85 (177)
T d1kmqa_           6 VIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDS   85 (177)
T ss_dssp             EEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC
T ss_pred             EEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhcccch
Confidence            44699999999999999999999999999986653   2556778999999999998766            99999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      ++||+++..|+.++..
T Consensus        86 ~~Sf~~~~~~~~~~~~  101 (177)
T d1kmqa_          86 PDSLENIPEKWTPEVK  101 (177)
T ss_dssp             HHHHHHHHHTHHHHHH
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            9999999877665543

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=7e-21  Score=117.49  Aligned_cols=81  Identities=12%  Similarity=0.210  Sum_probs=71.9

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      +.+|++|||||||++||+.++|.+++.||++..+..   ++...+.+.+||++|++.++.            |+|||+++
T Consensus         7 vvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~   86 (167)
T d1c1ya_           7 VVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITA   86 (167)
T ss_dssp             EEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTC
T ss_pred             EEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEEeeeccc
Confidence            346999999999999999999999999999976643   456779999999999998876            99999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      ++||+++..|+.++.+
T Consensus        87 ~~sf~~~~~~~~~~~~  102 (167)
T d1c1ya_          87 QSTFNDLQDLREQILR  102 (167)
T ss_dssp             HHHHHTHHHHHHHHHH
T ss_pred             hhhhHhHHHHHHHHHH
Confidence            9999999999988764

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=8.3e-21  Score=117.43  Aligned_cols=80  Identities=19%  Similarity=0.195  Sum_probs=68.9

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce-----------EEEEECCCh
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS-----------IYMVDAADT   84 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~-----------i~v~d~~~~   84 (101)
                      +.+|++|||||||++||+.++|.+++.||++.++..   .++..+.+.+||++|++.+..           ++|||++++
T Consensus         6 ~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~ilv~d~~~~   85 (168)
T d2atva1           6 AIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTIQREGHMRWGEGFVLVYDITDR   85 (168)
T ss_dssp             EEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCHHHHHHHHHCSEEEEEEETTCH
T ss_pred             EEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccccchhhhcccccceeecccCCc
Confidence            456999999999999999999999999999988754   345669999999999987644           999999999


Q ss_pred             hhHHHHHHHHHHHH
Q psy2967          85 DKLEASRNELHALI   98 (101)
Q Consensus        85 ~sf~~~~~~~~~i~   98 (101)
                      +||+++..|+..+.
T Consensus        86 ~s~~~~~~~~~~~~   99 (168)
T d2atva1          86 GSFEEVLPLKNILD   99 (168)
T ss_dssp             HHHHTHHHHHHHHH
T ss_pred             cchhhhhhhccccc
Confidence            99999998876543

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.5e-20  Score=114.96  Aligned_cols=81  Identities=23%  Similarity=0.398  Sum_probs=66.5

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|++|||||||++||..++|.+.+.||.+..+..    ..+..+.+.+||++|+++++.            ++|||++
T Consensus         7 vlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~   86 (167)
T d1z08a1           7 VLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDIT   86 (167)
T ss_dssp             EEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETT
T ss_pred             EEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEEEEeCC
Confidence            346999999999999999999999999999966643    345679999999999988765            9999999


Q ss_pred             ChhhHHHHHHHHHHHHH
Q psy2967          83 DTDKLEASRNELHALIE   99 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~   99 (101)
                      +++||+++..|+..+..
T Consensus        87 ~~~Sf~~~~~~~~~~~~  103 (167)
T d1z08a1          87 DEDSFQKVKNWVKELRK  103 (167)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             chhHHHhhhhhhhhccc
Confidence            99999999999987653

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.6e-20  Score=116.01  Aligned_cols=80  Identities=21%  Similarity=0.278  Sum_probs=70.6

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      .+|++|||||||++||+.++|.+.+.||++..+..   +++..+.+.+||++|++.+..            ++|||++++
T Consensus         7 viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~   86 (171)
T d2erxa1           7 VFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSR   86 (171)
T ss_dssp             EECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCH
T ss_pred             EECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEEeecccc
Confidence            46999999999999999999999999999976643   456668999999999998776            999999999


Q ss_pred             hhHHHHHHHHHHHHH
Q psy2967          85 DKLEASRNELHALIE   99 (101)
Q Consensus        85 ~sf~~~~~~~~~i~~   99 (101)
                      +||+++..|+.++.+
T Consensus        87 ~s~~~~~~~~~~~~~  101 (171)
T d2erxa1          87 QSLEELKPIYEQICE  101 (171)
T ss_dssp             HHHHTTHHHHHHHHH
T ss_pred             cchhcccchhhhhhh
Confidence            999999999887754

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.81  E-value=2.8e-20  Score=114.46  Aligned_cols=79  Identities=70%  Similarity=1.087  Sum_probs=73.3

Q ss_pred             eccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhHH
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLE   88 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf~   88 (101)
                      +|+++||||||+++|..+++.+.+.||++.++..++.+++.+.+||++|++.++.            ++|||++++++|+
T Consensus         8 ~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~   87 (164)
T d1zd9a1           8 VGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIE   87 (164)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHH
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCcccccceeeeeeeeeeeEEEEEeeccccccccccccccccccchhhcccccccccccc
Confidence            5999999999999999999999999999999998899999999999999987665            8999999999999


Q ss_pred             HHHHHHHHHHH
Q psy2967          89 ASRNELHALIE   99 (101)
Q Consensus        89 ~~~~~~~~i~~   99 (101)
                      ++..|+..+++
T Consensus        88 ~~~~~~~~~~~   98 (164)
T d1zd9a1          88 ASKNELHNLLD   98 (164)
T ss_dssp             HHHHHHHHHHT
T ss_pred             hhhhhhhhhhh
Confidence            99999988765

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.1e-20  Score=116.34  Aligned_cols=88  Identities=22%  Similarity=0.428  Sum_probs=74.7

Q ss_pred             cccceeeeE-eccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce-----------
Q psy2967          12 DMIPTVGFN-MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS-----------   75 (101)
Q Consensus        12 ~~~~~~g~~-vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~-----------   75 (101)
                      +.+|.+.+. +|+++||||||++++..+++.+.+.++.+..+.  .  +....+.+.+||++|+++++.           
T Consensus         3 ~~~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   82 (177)
T d1x3sa1           3 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG   82 (177)
T ss_dssp             TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred             cccceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            456776666 599999999999999999999988888876543  2  345678999999999998776           


Q ss_pred             -EEEEECCChhhHHHHHHHHHHHHH
Q psy2967          76 -IYMVDAADTDKLEASRNELHALIE   99 (101)
Q Consensus        76 -i~v~d~~~~~sf~~~~~~~~~i~~   99 (101)
                       ++|||++++.+|+.+..|+.++.+
T Consensus        83 ii~v~d~~~~~s~~~~~~~~~~i~~  107 (177)
T d1x3sa1          83 VILVYDVTRRDTFVKLDNWLNELET  107 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHTT
T ss_pred             EEEEEECCCccccccchhhhhhhcc
Confidence             999999999999999999998764

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=5.8e-20  Score=114.05  Aligned_cols=81  Identities=14%  Similarity=0.195  Sum_probs=70.0

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      +.+|++|||||||++||+.++|.+.+.||....+..   +++..+.+.+||++|++++..            ++|||+++
T Consensus        10 ~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   89 (173)
T d2fn4a1          10 VVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAIND   89 (173)
T ss_dssp             EEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTC
T ss_pred             EEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceeeeeeccccc
Confidence            346999999999999999999999999987755432   456679999999999998876            99999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      +.||+++..|+..+.+
T Consensus        90 ~~s~~~~~~~~~~i~~  105 (173)
T d2fn4a1          90 RQSFNEVGKLFTQILR  105 (173)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhhhHHHHH
Confidence            9999999999988764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=1.5e-20  Score=115.76  Aligned_cols=81  Identities=22%  Similarity=0.452  Sum_probs=63.4

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|+++||||||+++++.+++.+.+.||++.++..    +.+..+.+.+||++|+++++.            ++|||.+
T Consensus         6 ~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~   85 (166)
T d1g16a_           6 LLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDIT   85 (166)
T ss_dssp             EEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETT
T ss_pred             EEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECC
Confidence            346999999999999999999999999999866642    456678999999999988776            9999999


Q ss_pred             ChhhHHHHHHHHHHHHH
Q psy2967          83 DTDKLEASRNELHALIE   99 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~   99 (101)
                      +++||+++..|...+..
T Consensus        86 ~~~s~~~~~~~~~~~~~  102 (166)
T d1g16a_          86 DERTFTNIKQWFKTVNE  102 (166)
T ss_dssp             CHHHHHTHHHHHHHHHH
T ss_pred             CccCHHHHHhhhhhhhc
Confidence            99999999988876654

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.3e-20  Score=115.81  Aligned_cols=84  Identities=15%  Similarity=0.265  Sum_probs=70.3

Q ss_pred             cceeeeE-eccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce-------EEEEECC
Q psy2967          14 IPTVGFN-MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS-------IYMVDAA   82 (101)
Q Consensus        14 ~~~~g~~-vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~-------i~v~d~~   82 (101)
                      +|-+.+. +|+++||||||+++|..++|. .+.+|.+..+..   +++..+.+.+||++|+++++.       |+|||++
T Consensus         3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f~-~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~~~~~~ad~~ilVfd~~   81 (175)
T d2bmja1           3 IPELRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDAKFSGWADAVIFVFSLE   81 (175)
T ss_dssp             CCEEEEEEECCTTTTHHHHHHHHHHSCCC-CCCCSSCEEEEEEEEETTEEEEEEEEECSSCCCHHHHHHCSEEEEEEETT
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHhCCCC-CcCCccceeEEEEeecCceEEEEEEeecccccccccccccceeEEEeecc
Confidence            5666666 499999999999999999986 456777766643   456779999999999987665       9999999


Q ss_pred             ChhhHHHHHHHHHHHH
Q psy2967          83 DTDKLEASRNELHALI   98 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~   98 (101)
                      |++||+++..|+.++.
T Consensus        82 ~~~Sf~~~~~~~~~i~   97 (175)
T d2bmja1          82 DENSFQAVSRLHGQLS   97 (175)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhHHHHHHHH
Confidence            9999999999988774

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.5e-20  Score=113.83  Aligned_cols=80  Identities=16%  Similarity=0.407  Sum_probs=70.9

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      .+|++|||||||++||..+++.+.+.|+++.....    .++..+.+.+||++|+++++.            ++|||+++
T Consensus         5 vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~   84 (164)
T d1yzqa1           5 FLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITN   84 (164)
T ss_dssp             EEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTC
T ss_pred             EECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEeecccc
Confidence            46999999999999999999999999999876643    345679999999999998877            99999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      +.||+++..|+.++.+
T Consensus        85 ~~s~~~i~~~~~~~~~  100 (164)
T d1yzqa1          85 VNSFQQTTKWIDDVRT  100 (164)
T ss_dssp             HHHHHTHHHHHHHHHH
T ss_pred             ccchhhhHhhHHHHHH
Confidence            9999999999988764

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=3.2e-20  Score=115.16  Aligned_cols=81  Identities=20%  Similarity=0.440  Sum_probs=47.5

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|+++||||||+++++.+++...+.||++.++..    +++..+.+.+||++|++++..            |+|||++
T Consensus        10 ~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v~d~~   89 (173)
T d2fu5c1          10 LLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDIT   89 (173)
T ss_dssp             EEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETT
T ss_pred             EEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEEEEECC
Confidence            346999999999999999999998999999876643    345568999999999998776            9999999


Q ss_pred             ChhhHHHHHHHHHHHHH
Q psy2967          83 DTDKLEASRNELHALIE   99 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~   99 (101)
                      ++.||+.+..|..++..
T Consensus        90 ~~~s~~~~~~~~~~~~~  106 (173)
T d2fu5c1          90 NEKSFDNIRNWIRNIEE  106 (173)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             ChhhHHHHHHHHHHhhh
Confidence            99999999999888764

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=5.9e-20  Score=114.78  Aligned_cols=80  Identities=19%  Similarity=0.361  Sum_probs=68.2

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      +.+|++|||||||++||..++|.+++.||++.....   +++..+.+.+||++|++.+..            ++|||++|
T Consensus         6 vliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~   85 (179)
T d1m7ba_           6 VVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISR   85 (179)
T ss_dssp             EEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC
T ss_pred             EEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheeeeccc
Confidence            346999999999999999999999999998855432   456779999999999987765            99999999


Q ss_pred             hhhHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALI   98 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~   98 (101)
                      ++||+++..|+...+
T Consensus        86 ~~Sf~~~~~~~~~~~  100 (179)
T d1m7ba_          86 PETLDSVLKKWKGEI  100 (179)
T ss_dssp             HHHHHHHHHTHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999988766554

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=9.6e-20  Score=114.91  Aligned_cols=84  Identities=20%  Similarity=0.387  Sum_probs=71.5

Q ss_pred             eeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEE
Q psy2967          16 TVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMV   79 (101)
Q Consensus        16 ~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~   79 (101)
                      ..-+.+|+++||||||+++|..+.+.+.+.||.+..+..    +.+..+.+.+||++|+++++.            |+||
T Consensus         7 ~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v~   86 (194)
T d2bcgy1           7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVY   86 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEE
Confidence            333446999999999999999999999999998866532    456679999999999998876            9999


Q ss_pred             ECCChhhHHHHHHHHHHHHH
Q psy2967          80 DAADTDKLEASRNELHALIE   99 (101)
Q Consensus        80 d~~~~~sf~~~~~~~~~i~~   99 (101)
                      |++++++|.++..|...+.+
T Consensus        87 d~t~~~s~~~~~~~~~~~~~  106 (194)
T d2bcgy1          87 DVTDQESFNGVKMWLQEIDR  106 (194)
T ss_dssp             ETTCHHHHHHHHHHHHHHHH
T ss_pred             eCcchhhhhhHhhhhhhhhh
Confidence            99999999999998887754

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1e-19  Score=112.55  Aligned_cols=82  Identities=22%  Similarity=0.325  Sum_probs=70.4

Q ss_pred             eeEeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEEC
Q psy2967          18 GFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDA   81 (101)
Q Consensus        18 g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~   81 (101)
                      -+.+|++|||||||+++|..+.|.+.+.++.+.++..    +.+..+.+.+||++|+++++.            ++|||+
T Consensus         8 i~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v~d~   87 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDI   87 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEET
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEeeec
Confidence            3446999999999999999999999999988876543    345678999999999998765            999999


Q ss_pred             CChhhHHHHHHHHHHHHH
Q psy2967          82 ADTDKLEASRNELHALIE   99 (101)
Q Consensus        82 ~~~~sf~~~~~~~~~i~~   99 (101)
                      +++.+|+++..|+..+.+
T Consensus        88 ~~~~s~~~~~~~~~~i~~  105 (171)
T d2ew1a1          88 TCEESFRCLPEWLREIEQ  105 (171)
T ss_dssp             TCHHHHHTHHHHHHHHHH
T ss_pred             ccchhhhhhhhhhhhhcc
Confidence            999999999999988764

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=8e-20  Score=112.93  Aligned_cols=79  Identities=13%  Similarity=0.080  Sum_probs=54.8

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      .+|++|||||||+++|.+..+. .+.||.+..+..   +++..+.+.+||++|+++++.            |+|||++++
T Consensus         6 lvG~~~vGKTsLi~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~t~~   84 (168)
T d2gjsa1           6 LLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDK   84 (168)
T ss_dssp             EECCTTSSHHHHHHHHHTC----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEETTCH
T ss_pred             EECCCCcCHHHHHHHHhCCccC-CcCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceecccccc
Confidence            3699999999999999988765 455666665532   456779999999999998876            999999999


Q ss_pred             hhHHHHHHHHHHHHH
Q psy2967          85 DKLEASRNELHALIE   99 (101)
Q Consensus        85 ~sf~~~~~~~~~i~~   99 (101)
                      +||+++..|+.++..
T Consensus        85 ~s~~~~~~~~~~i~~   99 (168)
T d2gjsa1          85 GSFEKASELRVQLRR   99 (168)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             ccccccccccchhhc
Confidence            999999999998865

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=8.3e-20  Score=114.12  Aligned_cols=81  Identities=17%  Similarity=0.256  Sum_probs=68.1

Q ss_pred             eeEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          18 GFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        18 g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      -+.+|++|||||||++||+.++|.+++.||++..+..   .+...+.+.+||++|++.+..            ++|||++
T Consensus         8 ivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~   87 (183)
T d1mh1a_           8 CVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLV   87 (183)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETT
T ss_pred             EEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceeeeeeccc
Confidence            3446999999999999999999999999999865532   456678999999999988766            9999999


Q ss_pred             ChhhHHHHHHHHHHHH
Q psy2967          83 DTDKLEASRNELHALI   98 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~   98 (101)
                      +++||+++..|+....
T Consensus        88 ~~~sf~~i~~~~~~~~  103 (183)
T d1mh1a_          88 SPASFENVRAKWYPEV  103 (183)
T ss_dssp             CHHHHHHHHHTHHHHH
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            9999999987554443

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.8e-19  Score=111.01  Aligned_cols=80  Identities=16%  Similarity=0.252  Sum_probs=69.9

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      .+|++|||||||++||+.++|.+.+.||++..+..   ++...+.+.+||++|++.++.            ++|||++++
T Consensus         8 lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~   87 (167)
T d1kaoa_           8 VLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQ   87 (167)
T ss_dssp             EECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCH
T ss_pred             EECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeeeeeecch
Confidence            46999999999999999999999999999855432   456679999999999988765            999999999


Q ss_pred             hhHHHHHHHHHHHHH
Q psy2967          85 DKLEASRNELHALIE   99 (101)
Q Consensus        85 ~sf~~~~~~~~~i~~   99 (101)
                      +||+++..|+.++..
T Consensus        88 ~s~~~~~~~~~~~~~  102 (167)
T d1kaoa_          88 QSFQDIKPMRDQIIR  102 (167)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hhhhhhhchhhhhhh
Confidence            999999999988764

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=2.4e-19  Score=110.52  Aligned_cols=80  Identities=20%  Similarity=0.348  Sum_probs=69.6

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      .+|+++||||||++||+.++|.+.+.||.+.....    .......+.+||++|+++++.            |+|||+++
T Consensus         9 lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   88 (167)
T d1z0ja1           9 LLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITK   88 (167)
T ss_dssp             EECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTC
T ss_pred             EECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEEEeeech
Confidence            35999999999999999999999999999877643    234557889999999998776            99999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      +++|++++.|+.++.+
T Consensus        89 ~~s~~~~~~~~~~~~~  104 (167)
T d1z0ja1          89 EETFSTLKNWVRELRQ  104 (167)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHhhhhhhh
Confidence            9999999999987754

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=1.5e-19  Score=111.69  Aligned_cols=81  Identities=19%  Similarity=0.417  Sum_probs=69.0

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|++|||||||++++..++|.+.+.|+.+.+...    .....+.+++||++|+++++.            |+|||++
T Consensus         9 ~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv~d~~   88 (169)
T d3raba_           9 LIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDIT   88 (169)
T ss_dssp             EEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEEEETT
T ss_pred             EEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECc
Confidence            346999999999999999999999999999876643    334568999999999998775            9999999


Q ss_pred             ChhhHHHHHHHHHHHHH
Q psy2967          83 DTDKLEASRNELHALIE   99 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~   99 (101)
                      +++++.++..|+..+..
T Consensus        89 ~~~s~~~~~~~~~~~~~  105 (169)
T d3raba_          89 NEESFNAVQDWSTQIKT  105 (169)
T ss_dssp             CHHHHHTHHHHHHHHHH
T ss_pred             cchhhhhhhhhhhhhhc
Confidence            99999999998876543

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.3e-19  Score=112.01  Aligned_cols=81  Identities=16%  Similarity=0.217  Sum_probs=67.0

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      +.+|+++||||||++||+.+.|.+++.||.+..+..   +++..+.+.+||++|++.+..            ++|||+++
T Consensus         9 ~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~   88 (171)
T d2erya1           9 VVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTD   88 (171)
T ss_dssp             EEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEEEETTC
T ss_pred             EEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEEeecccc
Confidence            336999999999999999999999999998865532   556678999999999998766            99999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      ++||+++..|+.++++
T Consensus        89 ~~s~~~~~~~~~~~~~  104 (171)
T d2erya1          89 RGSFEEIYKFQRQILR  104 (171)
T ss_dssp             HHHHHTHHHHHHHHHH
T ss_pred             ccchhhHHHHhHHHHh
Confidence            9999999999988764

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.1e-19  Score=111.91  Aligned_cols=81  Identities=17%  Similarity=0.343  Sum_probs=69.8

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE----EEecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|+++||||||++|+.++++..++.|+.+.++.    .+++..+.+.+||++|+++++.            ++|||++
T Consensus         8 vlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~   87 (166)
T d1z0fa1           8 IIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDIT   87 (166)
T ss_dssp             EEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETT
T ss_pred             EEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEEeccC
Confidence            34699999999999999999999988888776553    2456678999999999998876            8999999


Q ss_pred             ChhhHHHHHHHHHHHHH
Q psy2967          83 DTDKLEASRNELHALIE   99 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~   99 (101)
                      +++||+.+..|+..+.+
T Consensus        88 ~~~s~~~~~~~~~~~~~  104 (166)
T d1z0fa1          88 RRSTYNHLSSWLTDARN  104 (166)
T ss_dssp             CHHHHHTHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHh
Confidence            99999999999987764

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.9e-19  Score=110.36  Aligned_cols=87  Identities=21%  Similarity=0.371  Sum_probs=73.4

Q ss_pred             cceeeeE-eccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------E
Q psy2967          14 IPTVGFN-MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------I   76 (101)
Q Consensus        14 ~~~~g~~-vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i   76 (101)
                      ++.+.+. +|++|||||||++||+.++|.+.+.||.+..+..    .....+.+.+||++|+++++.            +
T Consensus         4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   83 (170)
T d1r2qa_           4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             eeEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEE
Confidence            3444444 5999999999999999999999999999987754    334568999999999998876            8


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHh
Q psy2967          77 YMVDAADTDKLEASRNELHALIEK  100 (101)
Q Consensus        77 ~v~d~~~~~sf~~~~~~~~~i~~~  100 (101)
                      +|||++++++|+++..|...+.+.
T Consensus        84 lv~d~~~~~s~~~~~~~~~~~~~~  107 (170)
T d1r2qa_          84 VVYDITNEESFARAKNWVKELQRQ  107 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHH
T ss_pred             EEeccchhhHHHHHHHHhhhhhhc
Confidence            999999999999999998887653

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.6e-19  Score=110.20  Aligned_cols=81  Identities=15%  Similarity=0.221  Sum_probs=71.1

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE---EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      +.+|+++||||||++||++++|.+.+.||++..+..   ..+..+.+.+||++|++.+..            ++|||+++
T Consensus         7 ~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv~d~~~   86 (166)
T d1ctqa_           7 VVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINN   86 (166)
T ss_dssp             EEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEEEETTC
T ss_pred             EEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhcccccceeecccc
Confidence            346999999999999999999999999999977643   345679999999999998766            99999999


Q ss_pred             hhhHHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALIE   99 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~~   99 (101)
                      +.+|+++..|+..+.+
T Consensus        87 ~~s~~~~~~~~~~i~~  102 (166)
T d1ctqa_          87 TKSFEDIHQYREQIKR  102 (166)
T ss_dssp             HHHHHTHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHH
Confidence            9999999999998765

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3.8e-19  Score=110.14  Aligned_cols=84  Identities=21%  Similarity=0.328  Sum_probs=71.5

Q ss_pred             eeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEE
Q psy2967          17 VGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVD   80 (101)
Q Consensus        17 ~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d   80 (101)
                      .-+.+|++|||||||++||+.++|.+.+.||.+.....    .+.....+.+||++|++++..            ++|||
T Consensus         7 KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYD   86 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEE
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEEEe
Confidence            33446999999999999999999999999998877643    245568999999999998765            99999


Q ss_pred             CCChhhHHHHHHHHHHHHHh
Q psy2967          81 AADTDKLEASRNELHALIEK  100 (101)
Q Consensus        81 ~~~~~sf~~~~~~~~~i~~~  100 (101)
                      .+++++|.++..|+.++...
T Consensus        87 ~~~~~s~~~~~~~~~~~~~~  106 (174)
T d2bmea1          87 ITSRETYNALTNWLTDARML  106 (174)
T ss_dssp             TTCHHHHHTHHHHHHHHHHH
T ss_pred             cccchhHHHHhhhhcccccc
Confidence            99999999999999887653

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3.2e-19  Score=110.73  Aligned_cols=82  Identities=18%  Similarity=0.340  Sum_probs=67.6

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|++|||||||++||..+.+...+.++.+....  .  ++...+.+.+||++|+++++.            |+|||++
T Consensus         8 ~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v~d~~   87 (175)
T d2f9la1           8 VLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIA   87 (175)
T ss_dssp             EEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETT
T ss_pred             EEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEEEECC
Confidence            34699999999999999999999888888875542  2  445668999999999998766            9999999


Q ss_pred             ChhhHHHHHHHHHHHHHh
Q psy2967          83 DTDKLEASRNELHALIEK  100 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~~  100 (101)
                      +++||+.+.+|+.++.++
T Consensus        88 ~~~S~~~~~~~~~~i~~~  105 (175)
T d2f9la1          88 KHLTYENVERWLKELRDH  105 (175)
T ss_dssp             CHHHHHTHHHHHHHHHHH
T ss_pred             CcccchhHHHHHHHHHHh
Confidence            999999999999988754

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=4.9e-19  Score=109.36  Aligned_cols=83  Identities=24%  Similarity=0.421  Sum_probs=64.0

Q ss_pred             eeeEeccCCCcceeeeeccccCcCCCC-CCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEE
Q psy2967          17 VGFNMRKITKGNVTIWPVPLSGQFSQD-MIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMV   79 (101)
Q Consensus        17 ~g~~vG~~~vGKtsl~~~~~~~~~~~~-~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~   79 (101)
                      .-+.+|+++||||||+++|+.+++... +.++++.++..    ..+..+.+.+||++|+++++.            ++||
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~v~   87 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLY   87 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEE
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeEEEe
Confidence            334469999999999999999998654 46667766643    345568999999999998866            9999


Q ss_pred             ECCChhhHHHHHHHHHHHHH
Q psy2967          80 DAADTDKLEASRNELHALIE   99 (101)
Q Consensus        80 d~~~~~sf~~~~~~~~~i~~   99 (101)
                      |+++++||+.+..|+.++.+
T Consensus        88 d~~~~~s~~~~~~~~~~~~~  107 (170)
T d2g6ba1          88 DVTNKASFDNIQAWLTEIHE  107 (170)
T ss_dssp             ETTCHHHHHTHHHHHHHHHH
T ss_pred             cCCcccchhhhhhhhhhhhh
Confidence            99999999999999887654

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=6.2e-19  Score=110.08  Aligned_cols=83  Identities=18%  Similarity=0.359  Sum_probs=71.7

Q ss_pred             eeEeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEEC
Q psy2967          18 GFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDA   81 (101)
Q Consensus        18 g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~   81 (101)
                      -+.+|++|||||||++++++++|..++.||++.++..    ..+..+.+.+||++|+..+..            ++|||.
T Consensus         5 v~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~   84 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDV   84 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEET
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEeecc
Confidence            3456999999999999999999999999999977643    346678999999999887655            999999


Q ss_pred             CChhhHHHHHHHHHHHHHh
Q psy2967          82 ADTDKLEASRNELHALIEK  100 (101)
Q Consensus        82 ~~~~sf~~~~~~~~~i~~~  100 (101)
                      +++.+|+++.+|+.+++.+
T Consensus        85 ~~~~~~~~~~~~~~~i~~~  103 (184)
T d1vg8a_          85 TAPNTFKTLDSWRDEFLIQ  103 (184)
T ss_dssp             TCHHHHHTHHHHHHHHHHH
T ss_pred             cchhhhhcchhhHHHHHHH
Confidence            9999999999999888653

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=3.9e-19  Score=110.00  Aligned_cols=80  Identities=20%  Similarity=0.359  Sum_probs=59.8

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEE-----EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK-----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~-----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      .+|+++||||||+++|+.+++.+.+.||.+.....     .......+.+||++|++++..            ++|||++
T Consensus         7 ~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~   86 (175)
T d1ky3a_           7 ILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVT   86 (175)
T ss_dssp             EECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETT
T ss_pred             EECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEEEeecc
Confidence            36999999999999999999999999888754432     223457899999999987655            9999999


Q ss_pred             ChhhHHHHHHHHHHHHH
Q psy2967          83 DTDKLEASRNELHALIE   99 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~   99 (101)
                      ++.||+.+..|+.++.+
T Consensus        87 ~~~s~~~~~~~~~~i~~  103 (175)
T d1ky3a_          87 NASSFENIKSWRDEFLV  103 (175)
T ss_dssp             CHHHHHTHHHHHHHHHH
T ss_pred             cccccchhhhcchhhhh
Confidence            99999999999998865

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.75  E-value=1.7e-18  Score=106.10  Aligned_cols=79  Identities=29%  Similarity=0.592  Sum_probs=70.0

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKL   87 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf   87 (101)
                      .+|++|||||||+++|.++.+. .+.||++.....++.+++.+.+||++|++.++.            ++|||.+|+.++
T Consensus         7 ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~   85 (165)
T d1ksha_           7 MLGLDNAGKTTILKKFNGEDVD-TISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRM   85 (165)
T ss_dssp             EECSTTSSHHHHHHHHTTCCCS-SCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGH
T ss_pred             EECCCCCCHHHHHHHHcCCCCC-cccceEeeeeeeccccccceeeeecCcchhhhhHHHhhhhhhhcceeeeecccchhH
Confidence            4699999999999999987765 789999999888999999999999999987754            999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2967          88 EASRNELHALIE   99 (101)
Q Consensus        88 ~~~~~~~~~i~~   99 (101)
                      .++..|+.+.+.
T Consensus        86 ~~~~~~~~~~~~   97 (165)
T d1ksha_          86 QDCQRELQSLLV   97 (165)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHhhhhhhh
Confidence            999888877653

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=9.7e-19  Score=108.33  Aligned_cols=86  Identities=20%  Similarity=0.354  Sum_probs=68.4

Q ss_pred             cceeeeE-eccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------E
Q psy2967          14 IPTVGFN-MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------I   76 (101)
Q Consensus        14 ~~~~g~~-vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i   76 (101)
                      .|++.+. +|+++||||||++||..++|.+.+.+|++.....    ..+..+.+.+||++|+...+.            +
T Consensus         4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   83 (174)
T d1wmsa_           4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL   83 (174)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEE
Confidence            3555555 5999999999999999999999999999866532    345568999999999877655            9


Q ss_pred             EEEECCChhhHHHHHHHHHHHHH
Q psy2967          77 YMVDAADTDKLEASRNELHALIE   99 (101)
Q Consensus        77 ~v~d~~~~~sf~~~~~~~~~i~~   99 (101)
                      ++||.+++.||+.+..|++++.+
T Consensus        84 ~~~d~~~~~s~~~~~~~~~~i~~  106 (174)
T d1wmsa_          84 LTFSVDDSQSFQNLSNWKKEFIY  106 (174)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHH
T ss_pred             EEEeeecccccchhhhHHHHHHH
Confidence            99999999999999999988764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=8.5e-19  Score=108.60  Aligned_cols=82  Identities=17%  Similarity=0.289  Sum_probs=65.4

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEE----EecCcEEEEEEeeCCCCccce------------EEEEECC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS------------IYMVDAA   82 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~   82 (101)
                      +.+|++|||||||++|+..+++.+.+.|+.......    .....+.+.+||++|++.++.            ++|||++
T Consensus         7 vvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~   86 (173)
T d2a5ja1           7 IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT   86 (173)
T ss_dssp             EEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETT
T ss_pred             EEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEEEeec
Confidence            446999999999999999999998888777644432    345568999999999998877            9999999


Q ss_pred             ChhhHHHHHHHHHHHHHh
Q psy2967          83 DTDKLEASRNELHALIEK  100 (101)
Q Consensus        83 ~~~sf~~~~~~~~~i~~~  100 (101)
                      |++||+++..|+.++.+.
T Consensus        87 ~~~sf~~~~~~~~~~~~~  104 (173)
T d2a5ja1          87 RRETFNHLTSWLEDARQH  104 (173)
T ss_dssp             CHHHHHTHHHHHHHHHHH
T ss_pred             ChHHHHhHHHHHHHHHHh
Confidence            999999999999887653

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.73  E-value=2.3e-18  Score=106.42  Aligned_cols=82  Identities=33%  Similarity=0.600  Sum_probs=72.1

Q ss_pred             eeeEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          17 VGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        17 ~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      .-+.+|++|||||||++++.++++. .+.|+.+++...+..+++.+.+||++|++.++.            ++|||++|+
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~~~~~-~~~~~~~~~~~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~   96 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADR   96 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCG
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC-cceeeeeeeEEEeccCCeeEeEeeccccccchhHHHHHhhccceeEEeeccccc
Confidence            3445699999999999999999886 567888999888999999999999999998866            899999999


Q ss_pred             hhHHHHHHHHHHHHH
Q psy2967          85 DKLEASRNELHALIE   99 (101)
Q Consensus        85 ~sf~~~~~~~~~i~~   99 (101)
                      .+|+++..|+.++..
T Consensus        97 ~s~~~~~~~~~~~~~  111 (176)
T d1fzqa_          97 KRFEETGQELTELLE  111 (176)
T ss_dssp             GGHHHHHHHHHHHTT
T ss_pred             cchhhhhhhhhhhhh
Confidence            999999998877654

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=2.2e-18  Score=105.64  Aligned_cols=82  Identities=20%  Similarity=0.398  Sum_probs=69.2

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEE--E--EecCcEEEEEEeeCCCCccce-------------EEEEEC
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRS-------------IYMVDA   81 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~-------------i~v~d~   81 (101)
                      +.+|++|||||||++||+.++|.+.+.+|.+....  .  +......+.+||+.|.+.+..             ++|||+
T Consensus         6 ~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ilv~d~   85 (165)
T d1z06a1           6 IVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDM   85 (165)
T ss_dssp             EEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEET
T ss_pred             EEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEEEEEe
Confidence            34699999999999999999999999998885553  2  456678999999998765433             999999


Q ss_pred             CChhhHHHHHHHHHHHHHh
Q psy2967          82 ADTDKLEASRNELHALIEK  100 (101)
Q Consensus        82 ~~~~sf~~~~~~~~~i~~~  100 (101)
                      +|++||+++..|+.++.++
T Consensus        86 ~~~~s~~~~~~~~~~i~~~  104 (165)
T d1z06a1          86 TNMASFHSLPAWIEECKQH  104 (165)
T ss_dssp             TCHHHHHTHHHHHHHHHHH
T ss_pred             ehhhhhhhhhhhhHHHHhh
Confidence            9999999999999998764

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.72  E-value=2e-18  Score=107.45  Aligned_cols=79  Identities=32%  Similarity=0.619  Sum_probs=66.7

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKL   87 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf   87 (101)
                      .+|++|||||||++++..+++. ...||.+.....+..+++.+.+||++|+++++.            ++|||++|+.++
T Consensus        22 lvG~~~vGKTsLi~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~  100 (182)
T d1moza_          22 ILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRM  100 (182)
T ss_dssp             EEEETTSSHHHHHHHTCCSEEE-EECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTH
T ss_pred             EECCCCCCHHHHHHHHhcCCCC-ccccccceEEEEEeeCCEEEEEEecccccccchhHHhhhccceeEEEEeeecccccc
Confidence            4599999999999999988876 567899988888888999999999999998766            999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2967          88 EASRNELHALIE   99 (101)
Q Consensus        88 ~~~~~~~~~i~~   99 (101)
                      .++..|+.++++
T Consensus       101 ~~~~~~l~~~~~  112 (182)
T d1moza_         101 STASKELHLMLQ  112 (182)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHH
Confidence            999999887654

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.72  E-value=4.3e-18  Score=105.27  Aligned_cols=79  Identities=42%  Similarity=0.696  Sum_probs=70.0

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKL   87 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf   87 (101)
                      .+|+++||||||++|+..+.+. ...||.+..........+.+.+||++|++.++.            ++|||+++++++
T Consensus        17 lvG~~~vGKTSli~rl~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~D~s~~~~~   95 (173)
T d1e0sa_          17 MLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRI   95 (173)
T ss_dssp             EEEETTSSHHHHHHHTTCCCCE-EEEEETTEEEEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEEEEETTCGGGH
T ss_pred             EECCCCCCHHHHHHHHhcCCCC-CccceeeeeEEEeeccceeeEEecCCCcchhhhHHHhhhcccceEEEEEecccchhH
Confidence            4689999999999999988876 566888888888888999999999999988766            999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2967          88 EASRNELHALIE   99 (101)
Q Consensus        88 ~~~~~~~~~i~~   99 (101)
                      .++..|+...++
T Consensus        96 ~~~~~~l~~~~~  107 (173)
T d1e0sa_          96 DEARQELHRIIN  107 (173)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhh
Confidence            999999887764

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.6e-18  Score=108.23  Aligned_cols=81  Identities=27%  Similarity=0.449  Sum_probs=67.3

Q ss_pred             eeEeccCCCcceeeeeccccCcCCCCCCCccceEEEE--E--e----------cCcEEEEEEeeCCCCccce--------
Q psy2967          18 GFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRK--I--T----------KGNVTIKVWDIGGQPRFRS--------   75 (101)
Q Consensus        18 g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~--~--~----------~~~~~~~i~D~~G~~~~~~--------   75 (101)
                      -+.+|++|||||||+++|+.++|.+.+.+|.+.++..  +  +          ...+.+.+||++|+++++.        
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~~~~   87 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRD   87 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHHHTT
T ss_pred             EEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHHHHhc
Confidence            3446999999999999999999998888888766532  1  1          1247899999999998765        


Q ss_pred             ----EEEEECCChhhHHHHHHHHHHHH
Q psy2967          76 ----IYMVDAADTDKLEASRNELHALI   98 (101)
Q Consensus        76 ----i~v~d~~~~~sf~~~~~~~~~i~   98 (101)
                          |+|||++++.+|+.+..|+.++.
T Consensus        88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~  114 (186)
T d2f7sa1          88 AMGFLLMFDLTSQQSFLNVRNWMSQLQ  114 (186)
T ss_dssp             CCEEEEEEETTCHHHHHHHHHHHHTCC
T ss_pred             CCEEEEEEeccccccceeeeeccchhh
Confidence                99999999999999999987654

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=8e-17  Score=100.52  Aligned_cols=65  Identities=20%  Similarity=0.230  Sum_probs=57.8

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChh
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTD   85 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~   85 (101)
                      +.+|++|||||||++||..+.|  ++.||+|+++..+....+.+++||++|+++++.            +++||.++..
T Consensus         6 v~lG~~~vGKTsll~r~~~~~~--~~~pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~   82 (200)
T d2bcjq2           6 LLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYD   82 (200)
T ss_dssp             EEEESTTSSHHHHHHHHHHHTS--SCCCCCSCEEEEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGGGGG
T ss_pred             EEECCCCCCHHHHHHHHhCCCC--CCCceeeEEEEEEeccceeeeeccccccccccccccccccccceeeEeeeccchh
Confidence            3469999999999999998887  478999999999999999999999999998876            8899988764

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=1.2e-16  Score=100.08  Aligned_cols=78  Identities=23%  Similarity=0.356  Sum_probs=60.7

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChh-
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTD-   85 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~-   85 (101)
                      +.+|++|||||||++||   .+.+.+.||+|+....++.+...+.+||++|++.++.            +++||.++.. 
T Consensus         6 vllG~~~vGKTsll~r~---~f~~~~~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (200)
T d1zcba2           6 LLLGAGESGKSTFLKQM---RIIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQ   82 (200)
T ss_dssp             EEECSTTSSHHHHHHHH---HHHHSCCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTC
T ss_pred             EEECCCCCCHHHHHHHH---hcCCCCCCeeeeEEEEEeeeeeeeeeecccceeeecccccccccccceeEEEEEcCCcce
Confidence            44699999999999999   4667899999999999999999999999999988766            8899998753 


Q ss_pred             ---------hHHHHHHHHHHHHH
Q psy2967          86 ---------KLEASRNELHALIE   99 (101)
Q Consensus        86 ---------sf~~~~~~~~~i~~   99 (101)
                               ++++...|+.++++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~i~~  105 (200)
T d1zcba2          83 VLMEDRQTNRLTESLNIFETIVN  105 (200)
T ss_dssp             EETTEEEEEHHHHHHHHHHHHHT
T ss_pred             eeeecccchhhhHHHHHHHHHhh
Confidence                     45666677776654

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=1.6e-17  Score=103.40  Aligned_cols=66  Identities=24%  Similarity=0.245  Sum_probs=56.2

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhh
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDK   86 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~s   86 (101)
                      +.+|+.|||||||++||..+.++     |.++....++...+.+++||++|+++++.            ++|||++++.+
T Consensus         6 vllG~~~vGKTsl~~r~~~~~~~-----t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~~~~~   80 (195)
T d1svsa1           6 LLLGAGESGKSTIVKQMKIIHEA-----GTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL   80 (195)
T ss_dssp             EEECSTTSSHHHHHHHHHHHHSC-----CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGC
T ss_pred             EEECCCCCCHHHHHHHHhhCCCC-----CccEEEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEEeecccch
Confidence            34699999999999999877654     56776677888999999999999999888            89999999988


Q ss_pred             HHH
Q psy2967          87 LEA   89 (101)
Q Consensus        87 f~~   89 (101)
                      |..
T Consensus        81 ~~~   83 (195)
T d1svsa1          81 VLA   83 (195)
T ss_dssp             BCS
T ss_pred             HHH
Confidence            743

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.61  E-value=4.4e-16  Score=93.92  Aligned_cols=80  Identities=28%  Similarity=0.554  Sum_probs=66.2

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhh
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDK   86 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~s   86 (101)
                      +.+|++|||||||++++..+++...+..+ .......+...+.+.+||++|++.++.            +++||++++.+
T Consensus         4 vlvG~~~vGKSsLi~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~   82 (160)
T d1r8sa_           4 LMVGLDAAGKTTILYKLKLGEIVTTIPTI-GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER   82 (160)
T ss_dssp             EEECSTTSSHHHHHHHHHHHCSSCCCCCS-SCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGG
T ss_pred             EEECCCCCCHHHHHHHHhcCCCCccccce-eeEEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEecChHH
Confidence            34699999999999999999887654443 334456678889999999999987655            89999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy2967          87 LEASRNELHALIE   99 (101)
Q Consensus        87 f~~~~~~~~~i~~   99 (101)
                      +..+..|+.+++.
T Consensus        83 ~~~~~~~~~~~~~   95 (160)
T d1r8sa_          83 VNEAREELMRMLA   95 (160)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999888764

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.7e-16  Score=98.11  Aligned_cols=80  Identities=14%  Similarity=0.103  Sum_probs=58.7

Q ss_pred             EeccCCCcceeeeeccccCcCCC-CCCCccceEEE--E--EecCcEEEEEEeeC---CCCccce----------EEEEEC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQ-DMIPTVGFNMR--K--ITKGNVTIKVWDIG---GQPRFRS----------IYMVDA   81 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~-~~~~t~~~~~~--~--~~~~~~~~~i~D~~---G~~~~~~----------i~v~d~   81 (101)
                      .+|+++||||||+++|..+.+.. ...+|++.+..  .  ++++.+.+.+||+.   |++++..          |+|||+
T Consensus         8 lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~~~~~~~~~~~~~ilvfd~   87 (172)
T d2g3ya1           8 LIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSI   87 (172)
T ss_dssp             EECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEET
T ss_pred             EECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccccccccccccceeeeeecc
Confidence            36999999999999999876653 34556664332  2  45667888999865   4554322          899999


Q ss_pred             CChhhHHHHHHHHHHHHH
Q psy2967          82 ADTDKLEASRNELHALIE   99 (101)
Q Consensus        82 ~~~~sf~~~~~~~~~i~~   99 (101)
                      ++++||+++..|..++..
T Consensus        88 t~~~s~~~~~~~~~~i~~  105 (172)
T d2g3ya1          88 TDRASFEKASELRIQLRR  105 (172)
T ss_dssp             TCHHHHHHHHHHHHHHHT
T ss_pred             cccchhhhhhhhhhhhhh
Confidence            999999999999988764

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=1.3e-14  Score=87.19  Aligned_cols=79  Identities=25%  Similarity=0.473  Sum_probs=68.7

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKL   87 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf   87 (101)
                      .+|++|||||||++++.++++. .+.||.+.........+....+||+.|...+..            ++++|.+++.++
T Consensus         5 liG~~nvGKSSLln~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~   83 (166)
T d2qtvb1           5 FLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERF   83 (166)
T ss_dssp             EECSTTSSHHHHHHHHHHSCCC-CCCCCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCGGGH
T ss_pred             EECCCCCCHHHHHHHHhCCCCC-eeeceeeEeEEEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccccchhhh
Confidence            4699999999999999999876 688999999888888899999999999876554            899999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2967          88 EASRNELHALIE   99 (101)
Q Consensus        88 ~~~~~~~~~i~~   99 (101)
                      ..+..|.....+
T Consensus        84 ~~~~~~~~~~~~   95 (166)
T d2qtvb1          84 DEARVELDALFN   95 (166)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             hhhhHHHHhhhh
Confidence            999888766543

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.51  E-value=8.3e-15  Score=93.84  Aligned_cols=77  Identities=21%  Similarity=0.299  Sum_probs=62.0

Q ss_pred             eEeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCCh--
Q psy2967          19 FNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT--   84 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~--   84 (101)
                      +.+|++|||||||++|+..++    +.||+|+....++.+++.+.+||++||+.++.            ++|+|+++.  
T Consensus        10 lllG~~~vGKTsll~~~~~~~----~~pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s~~~~   85 (221)
T d1azta2          10 LLLGAGESGKSTIVKQMRILH----VVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNM   85 (221)
T ss_dssp             EEECSTTSSHHHHHHHHHHHH----CCCCCSCEEEEEEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEETTGGGC
T ss_pred             EEECCCCCCHHHHHHHHhcCC----cCCCCCeEEEEEEECcEEEEEEecCccceeccchhhhcccccceEEEEEcccccc
Confidence            446889999999999998665    45899999888889999999999999998766            889998864  


Q ss_pred             --------hhHHHHHHHHHHHHH
Q psy2967          85 --------DKLEASRNELHALIE   99 (101)
Q Consensus        85 --------~sf~~~~~~~~~i~~   99 (101)
                              .++.+...++..+++
T Consensus        86 ~~~~~~~~~r~~e~~~~~~~il~  108 (221)
T d1azta2          86 VIREDNQTNRLQEALNLFKSIWN  108 (221)
T ss_dssp             BCTTTSCSBHHHHHHHHHHHHHT
T ss_pred             ccccccchHHHHHHHHHHHHHhc
Confidence                    345566555565553

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=4.7e-14  Score=88.87  Aligned_cols=78  Identities=14%  Similarity=0.241  Sum_probs=61.2

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEEE---ecCcEEEEEEeeCCCCccce-------------EEEEECCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKI---TKGNVTIKVWDIGGQPRFRS-------------IYMVDAAD   83 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~i~D~~G~~~~~~-------------i~v~d~~~   83 (101)
                      .+|++|||||||++++..+++.. ..||++.+...+   ....+.+.+||++|+++++.             ++|+|++|
T Consensus         5 ivG~~~~GKTsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~~d   83 (207)
T d2fh5b1           5 FVGLCDSGKTLLFVRLLTGQYRD-TQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAA   83 (207)
T ss_dssp             EECSTTSSHHHHHHHHHHSCCCC-BCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTT
T ss_pred             EECCCCCCHHHHHHHHHcCCCCc-ccCCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEEccc
Confidence            36999999999999999988874 467888776553   34568999999999987654             88999999


Q ss_pred             hhhH-HHHHHHHHHHH
Q psy2967          84 TDKL-EASRNELHALI   98 (101)
Q Consensus        84 ~~sf-~~~~~~~~~i~   98 (101)
                      ..++ .+...|+.+++
T Consensus        84 ~~~~~~~~~~~l~~~l   99 (207)
T d2fh5b1          84 FQREVKDVAEFLYQVL   99 (207)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHH
Confidence            8774 55566666654

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.39  E-value=4.5e-13  Score=80.82  Aligned_cols=78  Identities=36%  Similarity=0.629  Sum_probs=66.1

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKL   87 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf   87 (101)
                      -+|++|||||||+++++.+++. ...+|.+........+.+.+.+||.++.+..+.            ++++|+.+..++
T Consensus        10 ivG~~~vGKSSLi~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (169)
T d1upta_          10 ILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRI   88 (169)
T ss_dssp             EECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTH
T ss_pred             EECCCCCCHHHHHHHHhCCCCc-ceecccceeeeeeccCceEEEEeeccccccccccchhhhhhhhhhhhhhhhhhcchh
Confidence            3699999999999999999987 466888887777788899999999999887666            889999999999


Q ss_pred             HHHHHHHHHHH
Q psy2967          88 EASRNELHALI   98 (101)
Q Consensus        88 ~~~~~~~~~i~   98 (101)
                      .....++....
T Consensus        89 ~~~~~~~~~~~   99 (169)
T d1upta_          89 GISKSELVAML   99 (169)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hhccchhhhhh
Confidence            88877665543

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.37  E-value=2.8e-13  Score=82.91  Aligned_cols=78  Identities=31%  Similarity=0.492  Sum_probs=61.2

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKL   87 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf   87 (101)
                      .+|++|||||||++|+..+++. ...++.+.........+..+.+||.++++..+.            ++++|.+|..++
T Consensus        20 vvG~~~~GKSsLi~rl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~   98 (177)
T d1zj6a1          20 IVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERI   98 (177)
T ss_dssp             EEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTH
T ss_pred             EECCCCCCHHHHHHHHhcCCCC-ccccccceeEEEEeecceEEEEeccccccccccchhhhhccceeeeeecccccccch
Confidence            4599999999999999998877 455666666666777889999999999876655            899999999999


Q ss_pred             HHHHHHHHHHH
Q psy2967          88 EASRNELHALI   98 (101)
Q Consensus        88 ~~~~~~~~~i~   98 (101)
                      .....+.....
T Consensus        99 ~~~~~~~~~~~  109 (177)
T d1zj6a1          99 SVTREELYKML  109 (177)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hhhhhhhhhhh
Confidence            99877665543

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.32  E-value=1.6e-12  Score=79.43  Aligned_cols=78  Identities=24%  Similarity=0.454  Sum_probs=57.4

Q ss_pred             EeccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce------------EEEEECCChhhH
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKL   87 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf   87 (101)
                      -+|++|||||||++++..+.+. ...|+.+.+...+...+..+..||+.++..+..            ++++|.+++..+
T Consensus        18 lvG~~~vGKTsLl~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~   96 (186)
T d1f6ba_          18 FLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERL   96 (186)
T ss_dssp             EEEETTSSHHHHHHHHSCC-------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGH
T ss_pred             EECCCCCCHHHHHHHHhCCCCc-ceecccccceeEEEecccccccccccchhhhhhHHhhhhcccceeeeeeeccCccch
Confidence            4688999999999999998877 456777777777777888999999999876555            899999999999


Q ss_pred             HHHHHHHHHHH
Q psy2967          88 EASRNELHALI   98 (101)
Q Consensus        88 ~~~~~~~~~i~   98 (101)
                      .+...++....
T Consensus        97 ~~~~~~~~~~~  107 (186)
T d1f6ba_          97 LESKEELDSLM  107 (186)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            98877655443

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.24  E-value=8e-13  Score=82.74  Aligned_cols=76  Identities=16%  Similarity=0.270  Sum_probs=56.3

Q ss_pred             eccCCCcceeeeeccccCcCCCCCCCccceEEEEEecCcEEEEEEeeCCCCccce----------------EEEEECC-C
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS----------------IYMVDAA-D   83 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------------i~v~d~~-~   83 (101)
                      +|.+|||||||+++++++++.+.+  |.......+..++..+.+||++|+++++.                ++++|.. +
T Consensus         9 vG~~n~GKTSLln~l~~~~~~~~t--t~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~vd~~~~   86 (209)
T d1nrjb_           9 AGPQNSGKTSLLTLLTTDSVRPTV--VSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVD   86 (209)
T ss_dssp             ECSTTSSHHHHHHHHHHSSCCCBC--CCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSC
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCeE--EecceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccccceEEEEecc
Confidence            688999999999999988765321  22233345667778889999999987655                6777765 5


Q ss_pred             hhhHHHHHHHHHHHH
Q psy2967          84 TDKLEASRNELHALI   98 (101)
Q Consensus        84 ~~sf~~~~~~~~~i~   98 (101)
                      ..+++.+..|+.+++
T Consensus        87 ~~~~~~~~~~l~~~~  101 (209)
T d1nrjb_          87 PKKLTTTAEFLVDIL  101 (209)
T ss_dssp             TTCCHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHH
Confidence            777888888876654

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.22  E-value=2.4e-11  Score=74.64  Aligned_cols=67  Identities=18%  Similarity=0.107  Sum_probs=47.8

Q ss_pred             eccCCCcceeeeeccccCcCC--CCCC-CccceEEEEEecCcEEEEEEeeCCCCccce--------------------EE
Q psy2967          21 MRKITKGNVTIWPVPLSGQFS--QDMI-PTVGFNMRKITKGNVTIKVWDIGGQPRFRS--------------------IY   77 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~--~~~~-~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------------------i~   77 (101)
                      +|.+|||||||++++++.+..  .... .|...........+..+.+||++|......                    ++
T Consensus        11 vG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ad~il~   90 (178)
T d1wf3a1          11 VGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVW   90 (178)
T ss_dssp             ECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeecccccccccccccchhcccccccccccccceee
Confidence            699999999999999976532  1222 333344445667788999999999854322                    88


Q ss_pred             EEECCChhhH
Q psy2967          78 MVDAADTDKL   87 (101)
Q Consensus        78 v~d~~~~~sf   87 (101)
                      |+|.++..+.
T Consensus        91 v~D~~~~~~~  100 (178)
T d1wf3a1          91 VVDLRHPPTP  100 (178)
T ss_dssp             EEETTSCCCH
T ss_pred             eechhhhhcc
Confidence            9999876553

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=1.1e-10  Score=70.17  Aligned_cols=76  Identities=14%  Similarity=0.183  Sum_probs=53.0

Q ss_pred             eccCCCcceeeeeccccCcCCC-CCCC-cc-ceEEEEEecCcEEEEEEeeCCCCccce--------------------EE
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQ-DMIP-TV-GFNMRKITKGNVTIKVWDIGGQPRFRS--------------------IY   77 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~-~~~~-t~-~~~~~~~~~~~~~~~i~D~~G~~~~~~--------------------i~   77 (101)
                      +|.+|||||||++++++..... ...| +. ......+...+..+.+||++|......                    ++
T Consensus         7 vG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~   86 (161)
T d2gj8a1           7 AGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLF   86 (161)
T ss_dssp             EESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHhccccce
Confidence            5999999999999999765431 2222 22 222334667788999999999765433                    88


Q ss_pred             EEECCChhhHHHHHHHHHH
Q psy2967          78 MVDAADTDKLEASRNELHA   96 (101)
Q Consensus        78 v~d~~~~~sf~~~~~~~~~   96 (101)
                      ++|..++.+++....|...
T Consensus        87 ~~d~~~~~~~~~~~~~~~~  105 (161)
T d2gj8a1          87 MVDGTTTDAVDPAEIWPEF  105 (161)
T ss_dssp             EEETTTCCCCSHHHHCHHH
T ss_pred             eeccccccchhhhhhhhhh
Confidence            8999988887777655443

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.89  E-value=3.6e-10  Score=67.80  Aligned_cols=71  Identities=17%  Similarity=0.224  Sum_probs=47.1

Q ss_pred             eccCCCcceeeeeccccCcCCC--CCC-CccceEEEEEecCcEEEEEEeeCCCCc--------c--ce-----------E
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQ--DMI-PTVGFNMRKITKGNVTIKVWDIGGQPR--------F--RS-----------I   76 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~--~~~-~t~~~~~~~~~~~~~~~~i~D~~G~~~--------~--~~-----------i   76 (101)
                      +|.+|||||||++++++.+...  .+. .|.......+...+..+.+||++|...        .  +.           +
T Consensus         6 iG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~ii   85 (160)
T d1xzpa2           6 VGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVL   85 (160)
T ss_dssp             ECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHhCCEEE
Confidence            5999999999999998654321  111 122222234566788999999998421        1  00           8


Q ss_pred             EEEECCChhhHHHHH
Q psy2967          77 YMVDAADTDKLEASR   91 (101)
Q Consensus        77 ~v~d~~~~~sf~~~~   91 (101)
                      +|+|.+++.+.+...
T Consensus        86 ~v~d~~~~~~~~~~~  100 (160)
T d1xzpa2          86 FVLDASSPLDEEDRK  100 (160)
T ss_dssp             EEEETTSCCCHHHHH
T ss_pred             EEEeCCCCcchhhhh
Confidence            899999887765543

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.84  E-value=1.7e-09  Score=66.11  Aligned_cols=54  Identities=15%  Similarity=0.096  Sum_probs=35.9

Q ss_pred             eeeEeccCCCcceeeeeccccCcCCC--CCCCccceEEEE-EecCcEEEEEEeeCCCC
Q psy2967          17 VGFNMRKITKGNVTIWPVPLSGQFSQ--DMIPTVGFNMRK-ITKGNVTIKVWDIGGQP   71 (101)
Q Consensus        17 ~g~~vG~~~vGKtsl~~~~~~~~~~~--~~~~t~~~~~~~-~~~~~~~~~i~D~~G~~   71 (101)
                      +++ +|.+|||||||++++++.....  ....|....+.. ....+..+.+||++|..
T Consensus         4 Vai-vG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~   60 (180)
T d1udxa2           4 VGL-VGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGII   60 (180)
T ss_dssp             EEE-ECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCC
T ss_pred             EEE-ECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeee
Confidence            443 5999999999999998654322  222334444433 34556789999999953

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.63  E-value=8.6e-09  Score=62.44  Aligned_cols=51  Identities=16%  Similarity=0.035  Sum_probs=33.0

Q ss_pred             eccCCCcceeeeeccccCcCC--CC-CCCccceEEEEEecCcEEEEEEeeCCCC
Q psy2967          21 MRKITKGNVTIWPVPLSGQFS--QD-MIPTVGFNMRKITKGNVTIKVWDIGGQP   71 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~--~~-~~~t~~~~~~~~~~~~~~~~i~D~~G~~   71 (101)
                      +|.+|||||||++++++....  .. ...|.......+......+.+||++|..
T Consensus         6 iG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~   59 (171)
T d1mkya1           6 VGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVF   59 (171)
T ss_dssp             ECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTT
T ss_pred             ECCCCCCHHHHHHHHhCCCcceecccCceeecccccccccccccccccccccee
Confidence            699999999999999875542  11 2223333344577888999999999853

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.57  E-value=2.2e-08  Score=60.87  Aligned_cols=46  Identities=20%  Similarity=0.143  Sum_probs=30.6

Q ss_pred             eccCCCcceeeeeccccCcCCCCCCC--ccceEEEEEecCcEEEEEEeeCCC
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQDMIP--TVGFNMRKITKGNVTIKVWDIGGQ   70 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~   70 (101)
                      +|.+|||||||++++.+.+......|  |...  ..+...+  +.+||++|.
T Consensus         6 vG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~--~~~~~~~--~~ivDtpG~   53 (184)
T d2cxxa1           6 AGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWKN--HKIIDMPGF   53 (184)
T ss_dssp             EEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEETT--EEEEECCCB
T ss_pred             ECCCCCCHHHHHHHHhCCCceeeCCCCEeecc--ccccccc--ceecccCCc
Confidence            68899999999999997655433222  3332  2233444  468999995

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.57  E-value=9.1e-09  Score=62.99  Aligned_cols=53  Identities=21%  Similarity=0.228  Sum_probs=34.6

Q ss_pred             eeeEeccCCCcceeeeeccccCcCC-CCC-CCccceEEEEEec-CcEEEEEEeeCCC
Q psy2967          17 VGFNMRKITKGNVTIWPVPLSGQFS-QDM-IPTVGFNMRKITK-GNVTIKVWDIGGQ   70 (101)
Q Consensus        17 ~g~~vG~~~vGKtsl~~~~~~~~~~-~~~-~~t~~~~~~~~~~-~~~~~~i~D~~G~   70 (101)
                      +++ +|.+|||||||++++.+.... .++ ..|.......... ....+.+||++|.
T Consensus         4 Vai-iG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~   59 (185)
T d1lnza2           4 VGL-VGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGL   59 (185)
T ss_dssp             EEE-ESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHH
T ss_pred             EEE-ECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCcEEEEecCCCc
Confidence            443 699999999999999865422 122 3344444444333 3457899999995

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.45  E-value=1.6e-07  Score=57.09  Aligned_cols=52  Identities=13%  Similarity=0.065  Sum_probs=32.3

Q ss_pred             eccCCCcceeeeeccccCcC--CCCCCCccc-eEEEEEecCcEEEEEEeeCCCCc
Q psy2967          21 MRKITKGNVTIWPVPLSGQF--SQDMIPTVG-FNMRKITKGNVTIKVWDIGGQPR   72 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~--~~~~~~t~~-~~~~~~~~~~~~~~i~D~~G~~~   72 (101)
                      +|.++||||||++++++...  ...+..|.. .....+...+..+.++|++|...
T Consensus        14 iG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~   68 (186)
T d1mkya2          14 VGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRR   68 (186)
T ss_dssp             ECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC--
T ss_pred             ECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeeccCCccc
Confidence            59999999999999987543  122222222 22233556677888889988753

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.35  E-value=6.6e-07  Score=57.70  Aligned_cols=52  Identities=13%  Similarity=0.045  Sum_probs=36.6

Q ss_pred             EeccCCCcceeeeeccccCcCCC--CC-CCccceEEEEEecCcEEEEEEeeCCCC
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQ--DM-IPTVGFNMRKITKGNVTIKVWDIGGQP   71 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~D~~G~~   71 (101)
                      -+|.+|||||||+|.+.+.+...  .. ..|...........+..+.++||+|-.
T Consensus        37 LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~   91 (257)
T d1h65a_          37 VMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLI   91 (257)
T ss_dssp             EEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSE
T ss_pred             EECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeeccc
Confidence            45999999999999999765321  22 223334444456677899999999964

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.35  E-value=1.7e-07  Score=57.56  Aligned_cols=33  Identities=9%  Similarity=0.240  Sum_probs=24.7

Q ss_pred             ccccccccceeeeEeccCCCcceeeeeccccCcC
Q psy2967           7 GQFSQDMIPTVGFNMRKITKGNVTIWPVPLSGQF   40 (101)
Q Consensus         7 ~~~~~~~~~~~g~~vG~~~vGKtsl~~~~~~~~~   40 (101)
                      .++....+|.+.+ +|.+|||||||++++.+.+.
T Consensus        16 ~~~p~~~~~~I~l-vG~~n~GKSTLin~L~g~~~   48 (195)
T d1svia_          16 EQYPEGGLPEIAL-AGRSNVGKSSFINSLINRKN   48 (195)
T ss_dssp             GGSCCSCCCEEEE-EEBTTSSHHHHHHHHHTC--
T ss_pred             hHCCCCCCCEEEE-ECCCCCCHHHHHHHhcCCCc
Confidence            4455566777765 69999999999999987543

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.34  E-value=1.6e-07  Score=58.86  Aligned_cols=73  Identities=16%  Similarity=0.150  Sum_probs=48.9

Q ss_pred             eeeE-eccCCCcceeeeeccccC--------cCCC----C-------CCCccceEEEEEecCcEEEEEEeeCCCCccce-
Q psy2967          17 VGFN-MRKITKGNVTIWPVPLSG--------QFSQ----D-------MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS-   75 (101)
Q Consensus        17 ~g~~-vG~~~vGKtsl~~~~~~~--------~~~~----~-------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-   75 (101)
                      +.+. +|-.++|||||+.++...        ....    +       ..-|+......+..++..+.+.|++|+..|-. 
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~~~   83 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKN   83 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHHH
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhHHH
Confidence            3444 499999999999998521        1110    0       12344444456778889999999999998876 


Q ss_pred             -----------EEEEECCChhhHHH
Q psy2967          76 -----------IYMVDAADTDKLEA   89 (101)
Q Consensus        76 -----------i~v~d~~~~~sf~~   89 (101)
                                 |+|+|..+-...+.
T Consensus        84 ~~~~~~~aD~avlVvda~~Gv~~qt  108 (204)
T d2c78a3          84 MITGAAQMDGAILVVSAADGPMPQT  108 (204)
T ss_dssp             HHHHHTTCSSEEEEEETTTCCCHHH
T ss_pred             HHHHHHHCCEEEEEEECCCCCcHHH
Confidence                       77777766544433

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.30  E-value=5.2e-07  Score=57.07  Aligned_cols=70  Identities=17%  Similarity=0.259  Sum_probs=45.1

Q ss_pred             cceeeeEeccCCCcceeeeeccccCcCCCC----CCCccceEEEE----------------EecCcEEEEEEeeCCCCcc
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLSGQFSQD----MIPTVGFNMRK----------------ITKGNVTIKVWDIGGQPRF   73 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~~~~----~~~t~~~~~~~----------------~~~~~~~~~i~D~~G~~~~   73 (101)
                      -|++.+ +|-+++|||||++++........    .....+.....                +..+...+.+.||+|++.|
T Consensus         5 ~p~IaI-iGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f   83 (227)
T d1g7sa4           5 SPIVSV-LGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (227)
T ss_dssp             CCEEEE-ECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCEEEE-EeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecc
Confidence            466554 69999999999999876422111    11111111111                2345678999999999887


Q ss_pred             ce------------EEEEECCCh
Q psy2967          74 RS------------IYMVDAADT   84 (101)
Q Consensus        74 ~~------------i~v~d~~~~   84 (101)
                      ..            |+|+|..+.
T Consensus        84 ~~~~~~~~~~~D~~ilVvda~~g  106 (227)
T d1g7sa4          84 TTLRKRGGALADLAILIVDINEG  106 (227)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTC
T ss_pred             cccchhcccccceEEEEEecccC
Confidence            55            999998764

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.24  E-value=4.2e-07  Score=54.76  Aligned_cols=51  Identities=18%  Similarity=0.125  Sum_probs=31.6

Q ss_pred             eccCCCcceeeeeccccCcCC--CCCCCccceEE-EEEecCcEEEEEEeeCCCC
Q psy2967          21 MRKITKGNVTIWPVPLSGQFS--QDMIPTVGFNM-RKITKGNVTIKVWDIGGQP   71 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~--~~~~~t~~~~~-~~~~~~~~~~~i~D~~G~~   71 (101)
                      +|.+|||||||++++++.+..  .....|..... .........+..||+.|..
T Consensus        11 iG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~   64 (179)
T d1egaa1          11 VGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH   64 (179)
T ss_dssp             ECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCC
T ss_pred             ECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCce
Confidence            699999999999999875432  11222222222 2234455667778877754

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=98.11  E-value=5.7e-07  Score=54.78  Aligned_cols=66  Identities=21%  Similarity=0.289  Sum_probs=41.3

Q ss_pred             eccCCCcceeeeeccccCcCCCC--CCC---ccceEE----EEEecCcEEEEEEeeCCCCccce------------EEEE
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQD--MIP---TVGFNM----RKITKGNVTIKVWDIGGQPRFRS------------IYMV   79 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~~--~~~---t~~~~~----~~~~~~~~~~~i~D~~G~~~~~~------------i~v~   79 (101)
                      +|.+++|||||++++.+......  ..+   ..+...    ......+..+.++|++|+..+..            ++++
T Consensus        11 iG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~~d~~ilv~   90 (179)
T d1wb1a4          11 FGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVV   90 (179)
T ss_dssp             EECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEE
T ss_pred             EeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhhcccccccc
Confidence            48899999999999985322111  111   112211    12456778899999999887654            8888


Q ss_pred             ECCChhh
Q psy2967          80 DAADTDK   86 (101)
Q Consensus        80 d~~~~~s   86 (101)
                      |.++...
T Consensus        91 d~~~g~~   97 (179)
T d1wb1a4          91 DAKEGPK   97 (179)
T ss_dssp             ETTTCSC
T ss_pred             ccccccc
Confidence            9887543

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.08  E-value=1.8e-06  Score=58.91  Aligned_cols=58  Identities=7%  Similarity=-0.063  Sum_probs=31.9

Q ss_pred             ceeeeEeccCCCcceeeeeccccCcCCCCC------CCccceEEEEEecCcEEEEEEeeCCCCc
Q psy2967          15 PTVGFNMRKITKGNVTIWPVPLSGQFSQDM------IPTVGFNMRKITKGNVTIKVWDIGGQPR   72 (101)
Q Consensus        15 ~~~g~~vG~~~vGKtsl~~~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~i~D~~G~~~   72 (101)
                      |+--..+|.+|||||||+|.+.+....+.-      .+|..........+.-.+.+|||+|-..
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~  119 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGS  119 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGG
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCCCeEEEEeCCCccc
Confidence            333334699999999999999864322111      1111111111122333477999999653

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=98.01  E-value=9.1e-06  Score=52.74  Aligned_cols=73  Identities=16%  Similarity=0.103  Sum_probs=51.1

Q ss_pred             eccCCCcceeeeecccc--CcCCC------------------CCCCccceEEEEEecCcEEEEEEeeCCCCccce-----
Q psy2967          21 MRKITKGNVTIWPVPLS--GQFSQ------------------DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS-----   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~--~~~~~------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----   75 (101)
                      +|-.++|||||+.++..  +....                  ....|+......+..++.++.++||+|+..|..     
T Consensus         8 iGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e~~~a   87 (267)
T d2dy1a2           8 VGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGA   87 (267)
T ss_dssp             EESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHHHHHH
T ss_pred             EcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhhhhhhh
Confidence            59999999999998752  11100                  122345555556788899999999999998877     


Q ss_pred             -------EEEEECCChhhHHHHHHH
Q psy2967          76 -------IYMVDAADTDKLEASRNE   93 (101)
Q Consensus        76 -------i~v~d~~~~~sf~~~~~~   93 (101)
                             |+|+|..+--.-+....|
T Consensus        88 l~~~D~avlvvda~~Gv~~~t~~~~  112 (267)
T d2dy1a2          88 LEAADAALVAVSAEAGVQVGTERAW  112 (267)
T ss_dssp             HHHCSEEEEEEETTTCSCHHHHHHH
T ss_pred             hcccCceEEEeeccCCccchhHHHH
Confidence                   888888876554444444

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=97.91  E-value=9e-06  Score=48.61  Aligned_cols=32  Identities=13%  Similarity=0.087  Sum_probs=23.0

Q ss_pred             ccccccceeeeEeccCCCcceeeeeccccCcCC
Q psy2967           9 FSQDMIPTVGFNMRKITKGNVTIWPVPLSGQFS   41 (101)
Q Consensus         9 ~~~~~~~~~g~~vG~~~vGKtsl~~~~~~~~~~   41 (101)
                      ..++..|.+.+ +|.+|||||||++++...+..
T Consensus        11 ~p~~~~~~I~l-vG~~NvGKSSL~n~L~~~~~~   42 (188)
T d1puia_          11 LPSDTGIEVAF-AGRSNAGKSSALNTLTNQKSL   42 (188)
T ss_dssp             SSCSCSEEEEE-EECTTSSHHHHHTTTCCC---
T ss_pred             CCCccCCEEEE-ECCCCCCHHHHHHHHhCCCce
Confidence            34455666665 799999999999999876543

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=97.88  E-value=2.1e-06  Score=53.34  Aligned_cols=63  Identities=16%  Similarity=0.193  Sum_probs=40.9

Q ss_pred             eccCCCcceeeeeccccC-------cCCC-------CCCCccceE----EEEEecCcEEEEEEeeCCCCccce-------
Q psy2967          21 MRKITKGNVTIWPVPLSG-------QFSQ-------DMIPTVGFN----MRKITKGNVTIKVWDIGGQPRFRS-------   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~-------~~~~-------~~~~t~~~~----~~~~~~~~~~~~i~D~~G~~~~~~-------   75 (101)
                      +|-.++|||||+.++...       .+..       ..+...|..    ...+...+..+.+.|++|+..|-.       
T Consensus         9 iGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~~~~~~~~   88 (196)
T d1d2ea3           9 IGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTA   88 (196)
T ss_dssp             ESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTSS
T ss_pred             EeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHHHHHHHHh
Confidence            599999999999988641       1100       011112222    234567788999999999987655       


Q ss_pred             -----EEEEECCC
Q psy2967          76 -----IYMVDAAD   83 (101)
Q Consensus        76 -----i~v~d~~~   83 (101)
                           |+|+|..+
T Consensus        89 ~aD~allVVda~~  101 (196)
T d1d2ea3          89 PLDGCILVVAAND  101 (196)
T ss_dssp             CCSEEEEEEETTT
T ss_pred             hcCeEEEEEEcCC
Confidence                 66777665

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.84  E-value=9.7e-06  Score=52.87  Aligned_cols=73  Identities=16%  Similarity=0.131  Sum_probs=50.2

Q ss_pred             eccCCCcceeeeecccc--CcCCC------------------CCCCccceEEEEEecCcEEEEEEeeCCCCccce-----
Q psy2967          21 MRKITKGNVTIWPVPLS--GQFSQ------------------DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS-----   75 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~--~~~~~------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----   75 (101)
                      +|-.++|||||+.++..  +....                  ...-|+......+.+++.++.+.||+|+..|-.     
T Consensus        12 ~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~e~~~~   91 (276)
T d2bv3a2          12 AAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERS   91 (276)
T ss_dssp             EECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCSTTHHHH
T ss_pred             EeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhHHHHHHH
Confidence            58899999999988753  11110                  112233333445778999999999999998877     


Q ss_pred             -------EEEEECCChhhHHHHHHH
Q psy2967          76 -------IYMVDAADTDKLEASRNE   93 (101)
Q Consensus        76 -------i~v~d~~~~~sf~~~~~~   93 (101)
                             |+|+|..+--.-+..+.|
T Consensus        92 l~~~D~avlVvda~~Gv~~~T~~~w  116 (276)
T d2bv3a2          92 MRVLDGAIVVFDSSQGVEPQSETVW  116 (276)
T ss_dssp             HHHCCEEEEEEETTTSSCHHHHHHH
T ss_pred             HHhhhheEEeccccCCcchhHHHHH
Confidence                   888888776555554444

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=2.1e-06  Score=50.91  Aligned_cols=24  Identities=25%  Similarity=0.375  Sum_probs=20.8

Q ss_pred             ccceeeeEeccCCCcceeeeecccc
Q psy2967          13 MIPTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        13 ~~~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      |+|++++ +|.+|||||||++++..
T Consensus         1 m~Pvi~i-tG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           1 MIPLLAF-AAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             CCCEEEE-ECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEE-EcCCCCCHHHHHHHHHH
Confidence            5888886 59999999999999863

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=97.63  E-value=5e-06  Score=51.07  Aligned_cols=22  Identities=14%  Similarity=0.237  Sum_probs=16.9

Q ss_pred             eeeeE-eccCCCcceeeeecccc
Q psy2967          16 TVGFN-MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        16 ~~g~~-vG~~~vGKtsl~~~~~~   37 (101)
                      .+.+. +|-.++|||||++++.+
T Consensus         5 ~inIaiiGhvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           5 EVNIGMVGHVDHGKTTLTKALTG   27 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHT
T ss_pred             cEEEEEEeccCCcHHHHHHHHHh
Confidence            33343 48889999999999975

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=97.63  E-value=2.5e-05  Score=49.25  Aligned_cols=30  Identities=20%  Similarity=0.318  Sum_probs=23.5

Q ss_pred             EecCcEEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          55 ITKGNVTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        55 ~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      ....+..+.+.|++|+..|-.            ++|+|..+-
T Consensus        84 ~~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G  125 (222)
T d1zunb3          84 FSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYG  125 (222)
T ss_dssp             EECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTC
T ss_pred             EeccceEEEEEeccchhhhhhhhccccccCceEEEEeccccC
Confidence            445678899999999998876            777777653

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.61  E-value=5.3e-05  Score=50.64  Aligned_cols=38  Identities=18%  Similarity=0.211  Sum_probs=29.1

Q ss_pred             cCcEEEEEEeeCCCCccce------------EEEEECCChhhHHHHHHHH
Q psy2967          57 KGNVTIKVWDIGGQPRFRS------------IYMVDAADTDKLEASRNEL   94 (101)
Q Consensus        57 ~~~~~~~i~D~~G~~~~~~------------i~v~d~~~~~sf~~~~~~~   94 (101)
                      ++++.+.+.||+|+..|..            |+|+|..+--..+....|-
T Consensus        93 ~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~  142 (341)
T d1n0ua2          93 GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLR  142 (341)
T ss_dssp             SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHH
T ss_pred             ccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHH
Confidence            3568899999999998877            9999998865555544443

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.55  E-value=8.7e-06  Score=51.23  Aligned_cols=30  Identities=20%  Similarity=0.318  Sum_probs=26.1

Q ss_pred             EEecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          54 KITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        54 ~~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      ..+.++..+.+.|++|+..|-.            |+|+|..+
T Consensus        75 ~~~~~~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~  116 (224)
T d1jnya3          75 RFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK  116 (224)
T ss_dssp             EEECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST
T ss_pred             EEecCCceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEeccc
Confidence            4567889999999999999877            89999986

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.55  E-value=1.8e-05  Score=51.95  Aligned_cols=19  Identities=16%  Similarity=0.151  Sum_probs=15.8

Q ss_pred             eccCCCcceeeeeccccCc
Q psy2967          21 MRKITKGNVTIWPVPLSGQ   39 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~   39 (101)
                      ||.|+||||||++.+.+.+
T Consensus         6 vG~pn~GKStlfn~lt~~~   24 (319)
T d1wxqa1           6 VGKPNVGKSTFFSAATLVD   24 (319)
T ss_dssp             EECTTSSHHHHHHHHHC--
T ss_pred             ECCCCCCHHHHHHHHHCCC
Confidence            5889999999999998743

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.48  E-value=8.1e-05  Score=48.45  Aligned_cols=22  Identities=14%  Similarity=0.190  Sum_probs=18.5

Q ss_pred             eeeeEeccCCCcceeeeeccccC
Q psy2967          16 TVGFNMRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        16 ~~g~~vG~~~vGKtsl~~~~~~~   38 (101)
                      .+|+ ||.|+||||||++.++..
T Consensus        12 kiGi-vG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          12 KTGI-VGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             EEEE-EECSSSSHHHHHHHHHHS
T ss_pred             EEEE-ECCCCCCHHHHHHHHHCC
Confidence            3564 699999999999999964

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.46  E-value=9.1e-06  Score=52.58  Aligned_cols=54  Identities=9%  Similarity=0.021  Sum_probs=30.4

Q ss_pred             eeeeEeccCCCcceeeeeccccCcCCCCCCCccceEEE--EEecCcEEEEEEeeCCCC
Q psy2967          16 TVGFNMRKITKGNVTIWPVPLSGQFSQDMIPTVGFNMR--KITKGNVTIKVWDIGGQP   71 (101)
Q Consensus        16 ~~g~~vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~D~~G~~   71 (101)
                      +.-..+|-||||||||+|++.+.... ...++-|..-.  .+. .+-.+.+.||+|--
T Consensus       113 ~~v~vvG~PNvGKSsliN~L~~~~~~-~~~~~pG~Tr~~~~i~-~~~~~~l~DTPGi~  168 (273)
T d1puja_         113 IRALIIGIPNVGKSTLINRLAKKNIA-KTGDRPGITTSQQWVK-VGKELELLDTPGIL  168 (273)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEE-ETTTEEEEECCCCC
T ss_pred             eEEEEEecCccchhhhhhhhhccceE-EECCcccccccceEEE-CCCCeEEecCCCcc
Confidence            33445799999999999999976543 23333333221  121 12248899999963

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.32  E-value=3.1e-05  Score=49.02  Aligned_cols=52  Identities=15%  Similarity=-0.001  Sum_probs=30.5

Q ss_pred             EeccCCCcceeeeeccccCcCCCC----------CCCccceEEEEEecCcEEEEEEeeCCCCccc
Q psy2967          20 NMRKITKGNVTIWPVPLSGQFSQD----------MIPTVGFNMRKITKGNVTIKVWDIGGQPRFR   74 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~   74 (101)
                      -+|.+|||||||++++........          .+.|.......+..+   -.+.||+|-..+.
T Consensus       100 ~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~~  161 (225)
T d1u0la2         100 MAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANLE  161 (225)
T ss_dssp             EECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTCC
T ss_pred             EECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCcccccc
Confidence            359999999999999986432211          122223333333332   3577999876543

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.22  E-value=3.5e-05  Score=49.05  Aligned_cols=63  Identities=16%  Similarity=0.231  Sum_probs=44.1

Q ss_pred             eccCCCcceeeeecccc--CcCC-------------------------------CCCCCccceEEEEEecCcEEEEEEee
Q psy2967          21 MRKITKGNVTIWPVPLS--GQFS-------------------------------QDMIPTVGFNMRKITKGNVTIKVWDI   67 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~--~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~~~i~D~   67 (101)
                      +|-.++|||||+.++..  +...                               .+.--|+......+...+.++.+.|+
T Consensus        12 iGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~iiDt   91 (239)
T d1f60a3          12 IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQVTVIDA   91 (239)
T ss_dssp             EECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEEEEEEC
T ss_pred             EeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCEEEEEEEC
Confidence            48889999999988752  1100                               01223344444556778899999999


Q ss_pred             CCCCccce------------EEEEECCC
Q psy2967          68 GGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        68 ~G~~~~~~------------i~v~d~~~   83 (101)
                      +|+..|-.            |+|+|..+
T Consensus        92 PGH~df~~~~~~g~~~~D~ailvvda~~  119 (239)
T d1f60a3          92 PGHRDFIKNMITGTSQADCAILIIAGGV  119 (239)
T ss_dssp             CCCTTHHHHHHHSSSCCSEEEEEEECSH
T ss_pred             CCcHHHHHHHHHHHHHhCEEEEEEECCC
Confidence            99998865            88888764

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.15  E-value=5.5e-05  Score=48.82  Aligned_cols=54  Identities=17%  Similarity=0.285  Sum_probs=32.4

Q ss_pred             eeeeEeccCCCcceeeeeccccCcCCC-C-----CCCccceEEE---E-------EecC---cEEEEEEeeCCC
Q psy2967          16 TVGFNMRKITKGNVTIWPVPLSGQFSQ-D-----MIPTVGFNMR---K-------ITKG---NVTIKVWDIGGQ   70 (101)
Q Consensus        16 ~~g~~vG~~~vGKtsl~~~~~~~~~~~-~-----~~~t~~~~~~---~-------~~~~---~~~~~i~D~~G~   70 (101)
                      .+|+ ||.|+||||||+++++..+... +     ..|.+|+-..   +       +..+   ...+.+.|.+|-
T Consensus         4 ~~Gi-vG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GL   76 (278)
T d1jala1           4 KCGI-VGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGL   76 (278)
T ss_dssp             EEEE-ECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSC
T ss_pred             eEEE-ECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEcccc
Confidence            4565 6999999999999999654321 2     2344553210   0       1111   246889999985

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.14  E-value=2.3e-05  Score=48.43  Aligned_cols=25  Identities=24%  Similarity=0.306  Sum_probs=19.9

Q ss_pred             EEEEEEeeCCCCccce------------EEEEECCCh
Q psy2967          60 VTIKVWDIGGQPRFRS------------IYMVDAADT   84 (101)
Q Consensus        60 ~~~~i~D~~G~~~~~~------------i~v~d~~~~   84 (101)
                      ..+.+.|++|+..|-.            |+|+|..+.
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~g  122 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEP  122 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSC
T ss_pred             EEEEEeccchHHHHHhhhhcceecccccccccccccc
Confidence            4688999999987754            888887663

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.08  E-value=0.00011  Score=46.71  Aligned_cols=29  Identities=10%  Similarity=0.281  Sum_probs=18.9

Q ss_pred             EecCcEEEEEEeeCCCCccce------------EEEEECCC
Q psy2967          55 ITKGNVTIKVWDIGGQPRFRS------------IYMVDAAD   83 (101)
Q Consensus        55 ~~~~~~~~~i~D~~G~~~~~~------------i~v~d~~~   83 (101)
                      ...+...+.+.|++|+..|-.            ++|+|..+
T Consensus        97 ~~~~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~  137 (245)
T d1r5ba3          97 FETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARR  137 (245)
T ss_dssp             EECSSEEEEECCCCC-----------TTSCSEEEEEEECST
T ss_pred             cccccceeeeecccccccchhhhhhhhhhhcceeeEEEcCC
Confidence            445678899999999998876            88888865

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.85  E-value=3e-05  Score=49.29  Aligned_cols=20  Identities=5%  Similarity=-0.087  Sum_probs=16.3

Q ss_pred             EeccCCCcceeeeeccccCc
Q psy2967          20 NMRKITKGNVTIWPVPLSGQ   39 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~   39 (101)
                      -+|.+|||||||+|++....
T Consensus       102 l~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2         102 FAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             EEESHHHHHHHHHHHHCC--
T ss_pred             EECCCCccHHHHHHhhccHh
Confidence            45999999999999999753

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.76  E-value=9.8e-05  Score=44.83  Aligned_cols=24  Identities=17%  Similarity=0.051  Sum_probs=20.4

Q ss_pred             cceeeeEeccCCCcceeeeecccc
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      .|++-+-+|.|||||||+.+++..
T Consensus         1 ~p~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           1 CPTLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            477888889999999999988763

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.0011  Score=42.81  Aligned_cols=51  Identities=14%  Similarity=0.005  Sum_probs=36.4

Q ss_pred             eccCCCcceeeeeccccCcCCCC-----CCCccceEEEE---EecCcEEEEEEeeCCCC
Q psy2967          21 MRKITKGNVTIWPVPLSGQFSQD-----MIPTVGFNMRK---ITKGNVTIKVWDIGGQP   71 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~~~~~~-----~~~t~~~~~~~---~~~~~~~~~i~D~~G~~   71 (101)
                      +|+..+|||+|++++.+..+.-.     ...|.|+-+..   .......+.+.|+.|-.
T Consensus        38 ~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~   96 (277)
T d1f5na2          38 VGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG   96 (277)
T ss_dssp             EEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred             ECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEeccccc
Confidence            59999999999999997653322     24566765433   23456788999998864

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.55  E-value=0.00017  Score=43.41  Aligned_cols=23  Identities=22%  Similarity=0.125  Sum_probs=19.4

Q ss_pred             ceeeeEeccCCCcceeeeecccc
Q psy2967          15 PTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        15 ~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      |.+-+.+|.+||||||+++++..
T Consensus        14 p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          14 PEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            66666789999999999998864

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.48  E-value=0.00017  Score=42.48  Aligned_cols=21  Identities=5%  Similarity=-0.111  Sum_probs=16.8

Q ss_pred             eeeEeccCCCcceeeeecccc
Q psy2967          17 VGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        17 ~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      .-+..|++|+|||||++++..
T Consensus         9 ~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           9 TVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             EEEEECCTTSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            333469999999999999864

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.48  E-value=0.00017  Score=43.56  Aligned_cols=23  Identities=22%  Similarity=0.160  Sum_probs=19.1

Q ss_pred             ceeeeEeccCCCcceeeeecccc
Q psy2967          15 PTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        15 ~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      |.+-+.+|+|||||||+..++..
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            55666789999999999988865

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.40  E-value=0.00024  Score=41.00  Aligned_cols=18  Identities=11%  Similarity=-0.064  Sum_probs=15.4

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      ..|++||||||+++++..
T Consensus         7 i~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           7 TIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EECCTTSSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            359999999999998764

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.33  E-value=0.00028  Score=42.70  Aligned_cols=28  Identities=18%  Similarity=0.144  Sum_probs=22.4

Q ss_pred             ccccccceeeeEeccCCCcceeeeecccc
Q psy2967           9 FSQDMIPTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus         9 ~~~~~~~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      ++.+.+|++-+ +|+|||||||+..++..
T Consensus         3 ~~~~~~~iI~i-~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           3 FSPDQVSVIFV-LGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             SCTTTCEEEEE-ECSTTSSHHHHHHHHHH
T ss_pred             CCCCCCcEEEE-ECCCCCCHHHHHHHHHH
Confidence            45566777766 69999999999988775

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.29  E-value=0.00027  Score=41.78  Aligned_cols=17  Identities=12%  Similarity=0.073  Sum_probs=14.7

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|.+|||||||+.+++.
T Consensus         7 ~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           7 VGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHH
Confidence            58899999999998764

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.29  E-value=0.00021  Score=41.83  Aligned_cols=18  Identities=17%  Similarity=-0.090  Sum_probs=15.1

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      -+|++||||||+.+++..
T Consensus         9 i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           9 LTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             EECSTTSSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            359999999999888764

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.20  E-value=0.00026  Score=41.81  Aligned_cols=18  Identities=11%  Similarity=-0.023  Sum_probs=15.6

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      -+|++|+|||||++.+.+
T Consensus         5 I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           5 ITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             EECCTTSSHHHHHHHHHH
T ss_pred             EECCCCcHHHHHHHHHHh
Confidence            359999999999998875

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0004  Score=41.82  Aligned_cols=23  Identities=22%  Similarity=0.135  Sum_probs=18.9

Q ss_pred             ceeeeEeccCCCcceeeeecccc
Q psy2967          15 PTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        15 ~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      |++-+.+|+|||||||...++..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            56667789999999999888764

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.04  E-value=0.00032  Score=42.28  Aligned_cols=23  Identities=13%  Similarity=-0.038  Sum_probs=18.2

Q ss_pred             ceeeeEeccCCCcceeeeecccc
Q psy2967          15 PTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        15 ~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      |+.-+-+|++||||||+...+..
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45555579999999999988764

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.04  E-value=0.00049  Score=40.02  Aligned_cols=18  Identities=11%  Similarity=-0.114  Sum_probs=14.9

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      -.|++||||||+++++..
T Consensus         7 i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           7 ITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EECSTTSSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            359999999999887763

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.96  E-value=0.0019  Score=41.39  Aligned_cols=55  Identities=7%  Similarity=0.111  Sum_probs=33.4

Q ss_pred             cceeeeEeccCCCcceeeeeccccCcC-CCCCCCccceE--EEEEecCcEEEEEEeeCC
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLSGQF-SQDMIPTVGFN--MRKITKGNVTIKVWDIGG   69 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~-~~~~~~t~~~~--~~~~~~~~~~~~i~D~~G   69 (101)
                      .|.+- .+|+.++|||||++.+++.++ +....|+...-  +............|...+
T Consensus        26 ~P~iv-vvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~   83 (299)
T d2akab1          26 LPQIA-VVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKG   83 (299)
T ss_dssp             CCEEE-EEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTT
T ss_pred             CCeEE-EEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCC
Confidence            45433 469999999999999998886 44555555422  222333334444554443

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.94  E-value=0.00037  Score=40.84  Aligned_cols=16  Identities=13%  Similarity=0.007  Sum_probs=13.2

Q ss_pred             eccCCCcceeeeeccc
Q psy2967          21 MRKITKGNVTIWPVPL   36 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~   36 (101)
                      +|.+||||||+.+.+.
T Consensus        12 ~G~~GsGKTTia~~La   27 (183)
T d1m8pa3          12 TGYMNSGKDAIARALQ   27 (183)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            3999999999876655

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=95.91  E-value=0.0005  Score=45.48  Aligned_cols=22  Identities=14%  Similarity=0.009  Sum_probs=18.6

Q ss_pred             cceeeeEeccCCCcceeeeeccc
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPL   36 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~   36 (101)
                      .+++|+ .|.||||||||+.++.
T Consensus        54 ~~~Igi-tG~pGaGKSTLi~~l~   75 (327)
T d2p67a1          54 TLRLGV-TGTPGAGKSTFLEAFG   75 (327)
T ss_dssp             SEEEEE-EECTTSCHHHHHHHHH
T ss_pred             ceEEEe-eCCCCCCHHHHHHHHH
Confidence            566674 5999999999999986

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.73  E-value=0.00073  Score=42.27  Aligned_cols=24  Identities=13%  Similarity=0.083  Sum_probs=18.8

Q ss_pred             cceeeeEeccCCCcceeeeecccc
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      .|..-+-.|+||+|||+|++.+..
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            455444569999999999998765

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=95.66  E-value=0.0008  Score=41.47  Aligned_cols=18  Identities=11%  Similarity=-0.125  Sum_probs=15.5

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      .+|.+|+|||||++++..
T Consensus         5 v~G~~GsGKTTLl~~ll~   22 (244)
T d1yrba1           5 FVGTAGSGKTTLTGEFGR   22 (244)
T ss_dssp             EECSTTSSHHHHHHHHHH
T ss_pred             EEcCCCCcHHHHHHHHHH
Confidence            458899999999999863

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.00043  Score=40.59  Aligned_cols=17  Identities=12%  Similarity=-0.019  Sum_probs=14.9

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|++|+|||+|+..+..
T Consensus         7 tG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           7 TGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             ESCCSSCHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHH
Confidence            49999999999988774

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.56  E-value=0.001  Score=38.82  Aligned_cols=19  Identities=11%  Similarity=-0.038  Sum_probs=15.5

Q ss_pred             eEeccCCCcceeeeecccc
Q psy2967          19 FNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~   37 (101)
                      +-+|.+||||||+.+.+..
T Consensus        10 vl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_          10 VLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEECSTTSCHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            3469999999999988654

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.54  E-value=0.00086  Score=44.22  Aligned_cols=23  Identities=22%  Similarity=0.004  Sum_probs=19.1

Q ss_pred             cceeeeEeccCCCcceeeeecccc
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      .+++|+ .|.||+|||||+.++..
T Consensus        51 ~~~igi-tG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          51 AIRVGI-TGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             SEEEEE-ECCTTSCHHHHHHHHHH
T ss_pred             ceEEee-eCCCCCCHHHHHHHHHH
Confidence            566775 59999999999998774

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=95.45  E-value=0.00068  Score=38.89  Aligned_cols=17  Identities=18%  Similarity=0.085  Sum_probs=14.5

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|++||||||+.+.+..
T Consensus         8 ~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           8 VGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            38899999999888764

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=95.37  E-value=0.0011  Score=38.64  Aligned_cols=17  Identities=6%  Similarity=0.024  Sum_probs=14.8

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|++||||||+.+.+..
T Consensus        11 ~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_          11 TGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHH
Confidence            49999999999988864

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.15  E-value=0.0018  Score=37.69  Aligned_cols=19  Identities=16%  Similarity=0.001  Sum_probs=15.0

Q ss_pred             eEeccCCCcceeeeecccc
Q psy2967          19 FNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~   37 (101)
                      +-.|++||||||+.+.+..
T Consensus         8 ~l~G~~GsGKSTia~~La~   26 (176)
T d1zp6a1           8 LLSGHPGSGKSTIAEALAN   26 (176)
T ss_dssp             EEEECTTSCHHHHHHHHHT
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            3459999999998877754

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.15  E-value=0.0014  Score=42.71  Aligned_cols=23  Identities=13%  Similarity=0.024  Sum_probs=15.7

Q ss_pred             ccceeeeEeccCCCcceeeeeccc
Q psy2967          13 MIPTVGFNMRKITKGNVTIWPVPL   36 (101)
Q Consensus        13 ~~~~~g~~vG~~~vGKtsl~~~~~   36 (101)
                      ..|++|+ .|++||||||+.+.+.
T Consensus         3 k~pIIgI-aG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           3 KHPIISV-TGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             TSCEEEE-ESCC---CCTHHHHHH
T ss_pred             CCCEEEE-ECCCCCcHHHHHHHHH
Confidence            3678886 5999999999998654

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=95.12  E-value=0.0013  Score=38.22  Aligned_cols=17  Identities=18%  Similarity=-0.015  Sum_probs=14.5

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|.+|+||||+.+.+..
T Consensus         9 ~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           9 NGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999988764

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.11  E-value=0.0016  Score=41.94  Aligned_cols=26  Identities=12%  Similarity=0.334  Sum_probs=21.5

Q ss_pred             cceeeeEeccCCCcceeeeeccccCcC
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLSGQF   40 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~~~~   40 (101)
                      .|.+ ++||+.++|||||++.+++.++
T Consensus        24 lP~i-vVvG~~ssGKSSliNaLlG~~~   49 (306)
T d1jwyb_          24 LPQI-VVVGSQSSGKSSVLENIVGRDF   49 (306)
T ss_dssp             CCEE-EEEECSSSSHHHHHHHHHTSCC
T ss_pred             CCeE-EEEeCCCCCHHHHHHHHhCCCC
Confidence            4544 3579999999999999998776

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=95.00  E-value=0.00088  Score=41.49  Aligned_cols=17  Identities=18%  Similarity=0.030  Sum_probs=15.0

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|+||+|||++++.+..
T Consensus        41 ~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          41 AGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             ESSTTSSHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHh
Confidence            49999999999988774

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.96  E-value=0.0015  Score=39.35  Aligned_cols=21  Identities=14%  Similarity=0.006  Sum_probs=17.0

Q ss_pred             eeeEeccCCCcceeeeecccc
Q psy2967          17 VGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        17 ~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      +-+-+|+|||||||+..++..
T Consensus        10 iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            344569999999999988875

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.96  E-value=0.0014  Score=40.72  Aligned_cols=18  Identities=11%  Similarity=0.182  Sum_probs=15.3

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      ..|++|+|||||++++..
T Consensus        34 i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          34 VLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEESTTSSHHHHHHHHHH
T ss_pred             EEcCCCCcHHHHHHHHHH
Confidence            349999999999998764

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.93  E-value=0.0018  Score=40.94  Aligned_cols=24  Identities=13%  Similarity=0.102  Sum_probs=19.1

Q ss_pred             cceeeeEe-ccCCCcceeeeecccc
Q psy2967          14 IPTVGFNM-RKITKGNVTIWPVPLS   37 (101)
Q Consensus        14 ~~~~g~~v-G~~~vGKtsl~~~~~~   37 (101)
                      .|..++-+ |++|+|||++++.+..
T Consensus        38 ~p~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          38 TPLVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHhh
Confidence            46666554 9999999999988764

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.85  E-value=0.0014  Score=39.46  Aligned_cols=18  Identities=11%  Similarity=0.019  Sum_probs=15.6

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      .+|++|||||||++++..
T Consensus         6 l~GpsG~GK~tl~~~L~~   23 (186)
T d1gkya_           6 ISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             EECCTTSSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            369999999999998864

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.83  E-value=0.0013  Score=40.58  Aligned_cols=18  Identities=11%  Similarity=-0.060  Sum_probs=15.1

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      -||+||||||+++..+..
T Consensus        48 LvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          48 LIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             EECCTTSCHHHHHHHHHH
T ss_pred             EEecCCcccHHHHHHHHH
Confidence            369999999999877664

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.78  E-value=0.0017  Score=38.31  Aligned_cols=18  Identities=17%  Similarity=-0.121  Sum_probs=15.1

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      .+|+|||||||+.+.+..
T Consensus         5 i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           5 LMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             EECSTTSSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            469999999999987754

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=94.76  E-value=0.0011  Score=41.07  Aligned_cols=17  Identities=18%  Similarity=0.034  Sum_probs=14.9

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|+||+|||++++.+..
T Consensus        41 ~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          41 FGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999988774

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.74  E-value=0.0014  Score=42.18  Aligned_cols=18  Identities=11%  Similarity=-0.145  Sum_probs=15.2

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      -||++|||||+++..+..
T Consensus        44 LVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          44 LVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             EECCTTSSHHHHHHHHHH
T ss_pred             EECCCCCcHHHHHHHHHH
Confidence            469999999999887764

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.73  E-value=0.0016  Score=41.03  Aligned_cols=17  Identities=18%  Similarity=0.118  Sum_probs=14.5

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|++|||||||++-+.+
T Consensus        37 iG~sGsGKSTLl~~i~g   53 (230)
T d1l2ta_          37 MGPSGSGKSTMLNIIGC   53 (230)
T ss_dssp             ECSTTSSHHHHHHHHTT
T ss_pred             ECCCCCCcchhhHhccC
Confidence            39999999999987664

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=94.65  E-value=0.0019  Score=38.39  Aligned_cols=18  Identities=17%  Similarity=-0.147  Sum_probs=15.3

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      -+|+|||||||+..++..
T Consensus         5 i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           5 LMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             EECSTTSSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            469999999999988775

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=94.65  E-value=0.0025  Score=40.23  Aligned_cols=18  Identities=11%  Similarity=-0.001  Sum_probs=15.3

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++-+.+-
T Consensus        34 vG~nGaGKSTLl~~l~G~   51 (238)
T d1vpla_          34 IGPNGAGKTTTLRIISTL   51 (238)
T ss_dssp             ECCTTSSHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            477899999999988854

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.64  E-value=0.0027  Score=37.56  Aligned_cols=17  Identities=12%  Similarity=-0.105  Sum_probs=14.8

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      -|++|||||||.+++..
T Consensus        28 ~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          28 DGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999988764

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.61  E-value=0.0025  Score=37.27  Aligned_cols=16  Identities=13%  Similarity=0.021  Sum_probs=13.7

Q ss_pred             eccCCCcceeeeeccc
Q psy2967          21 MRKITKGNVTIWPVPL   36 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~   36 (101)
                      .|.+||||||+++++.
T Consensus         7 ~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           7 TGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            4899999999998764

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.54  E-value=0.0022  Score=38.22  Aligned_cols=19  Identities=11%  Similarity=-0.097  Sum_probs=15.9

Q ss_pred             EeccCCCcceeeeeccccC
Q psy2967          20 NMRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~   38 (101)
                      -+|++|||||||++.+...
T Consensus         7 l~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           7 LSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EECSTTSSHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHhh
Confidence            3599999999999888643

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.52  E-value=0.0048  Score=36.85  Aligned_cols=23  Identities=17%  Similarity=0.020  Sum_probs=17.1

Q ss_pred             ceeeeEeccCCCcceeeeecccc
Q psy2967          15 PTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        15 ~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      |++-..-|..||||||+++.+..
T Consensus         9 p~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           9 PFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            43333348889999999999875

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.47  E-value=0.0025  Score=39.16  Aligned_cols=19  Identities=11%  Similarity=0.027  Sum_probs=16.3

Q ss_pred             EeccCCCcceeeeeccccC
Q psy2967          20 NMRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~   38 (101)
                      .+|++||||+||.+++...
T Consensus         7 i~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           7 VSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EECCTTSCHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHhh
Confidence            4699999999999998753

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=94.33  E-value=0.0046  Score=36.73  Aligned_cols=45  Identities=18%  Similarity=0.136  Sum_probs=27.1

Q ss_pred             ccCCCcceeeeeccccCcCC--CCCCCccceEEEEEecCcEEEEEEee
Q psy2967          22 RKITKGNVTIWPVPLSGQFS--QDMIPTVGFNMRKITKGNVTIKVWDI   67 (101)
Q Consensus        22 G~~~vGKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~i~D~   67 (101)
                      |+-|+|||+|++.++.+=-.  .-.+||...- ..+...+..+..+|.
T Consensus        40 G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~l~-~~Y~~~~~~i~H~Dl   86 (158)
T d1htwa_          40 GDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLV-EEYNIAGKMIYHFDL   86 (158)
T ss_dssp             CSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCE-EEEEETTEEEEEEEC
T ss_pred             cCCCccHHHHHHHHHhhcccccccCCCceEEE-EeeccCCceEEEEEE
Confidence            99999999999998863222  1246776532 223334444555453

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.32  E-value=0.0027  Score=37.79  Aligned_cols=18  Identities=17%  Similarity=-0.060  Sum_probs=15.4

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      .+|+|||||||+.+.+..
T Consensus         7 l~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           7 LIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             EECCTTSSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            459999999999988764

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.30  E-value=0.0021  Score=40.53  Aligned_cols=17  Identities=12%  Similarity=0.054  Sum_probs=14.3

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|+.|||||||++-+.+
T Consensus        32 iGpsGsGKSTLl~~i~G   48 (232)
T d2awna2          32 VGPSGCGKSTLLRMIAG   48 (232)
T ss_dssp             ECCTTSSHHHHHHHHHT
T ss_pred             ECCCCChHHHHHHHHhc
Confidence            48889999999987764

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=94.26  E-value=0.0023  Score=41.63  Aligned_cols=23  Identities=9%  Similarity=-0.058  Sum_probs=17.8

Q ss_pred             ceeeeE-eccCCCcceeeeecccc
Q psy2967          15 PTVGFN-MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        15 ~~~g~~-vG~~~vGKtsl~~~~~~   37 (101)
                      |..|+- +|++|||||.|++.+..
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhh
Confidence            445544 49999999999988764

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.26  E-value=0.0027  Score=37.64  Aligned_cols=18  Identities=11%  Similarity=-0.211  Sum_probs=15.3

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      -+|+|||||||+.+++..
T Consensus         5 i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           5 LLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             EECCTTSSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            359999999999988764

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=94.25  E-value=0.0059  Score=37.83  Aligned_cols=26  Identities=23%  Similarity=0.070  Sum_probs=15.8

Q ss_pred             ccccceeeeEeccCCCcceeeeeccc
Q psy2967          11 QDMIPTVGFNMRKITKGNVTIWPVPL   36 (101)
Q Consensus        11 ~~~~~~~g~~vG~~~vGKtsl~~~~~   36 (101)
                      +...|.+-+-+|+.||||||.+-++.
T Consensus         8 ~~k~p~vi~lvGptGvGKTTTiAKLA   33 (211)
T d1j8yf2           8 PDKIPYVIMLVGVQGTGKATTAGKLA   33 (211)
T ss_dssp             CSSSSEEEEEECSCCC----HHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHH
Confidence            34467776668999999999876655

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.22  E-value=0.002  Score=40.10  Aligned_cols=17  Identities=12%  Similarity=0.290  Sum_probs=15.1

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|+||+|||++++.+..
T Consensus        52 ~GppGtGKT~l~~~l~~   68 (287)
T d1w5sa2          52 IGRVGIGKTTLAKFTVK   68 (287)
T ss_dssp             TTCCSSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999988774

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.21  E-value=0.0025  Score=39.15  Aligned_cols=16  Identities=13%  Similarity=0.015  Sum_probs=14.4

Q ss_pred             ccCCCcceeeeecccc
Q psy2967          22 RKITKGNVTIWPVPLS   37 (101)
Q Consensus        22 G~~~vGKtsl~~~~~~   37 (101)
                      |+.|+|||||++-+.+
T Consensus        34 G~NGsGKSTLl~~i~g   49 (200)
T d1sgwa_          34 GPNGIGKTTLLKTIST   49 (200)
T ss_dssp             CCTTSSHHHHHHHHTT
T ss_pred             CCCCChHHHHHHHHhc
Confidence            8889999999999875

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.19  E-value=0.0028  Score=37.49  Aligned_cols=18  Identities=11%  Similarity=-0.056  Sum_probs=15.0

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      -+|+|||||||...++..
T Consensus         5 i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           5 LLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             EEESTTSSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            369999999999887754

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=94.17  E-value=0.0025  Score=40.35  Aligned_cols=17  Identities=12%  Similarity=-0.134  Sum_probs=14.9

Q ss_pred             ccCCCcceeeeeccccC
Q psy2967          22 RKITKGNVTIWPVPLSG   38 (101)
Q Consensus        22 G~~~vGKtsl~~~~~~~   38 (101)
                      |++|||||||++-+.+-
T Consensus        38 G~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          38 GASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             ESTTSSHHHHHHHHTTS
T ss_pred             CCCCCCHHHHHHHHcCC
Confidence            88999999999888753

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.17  E-value=0.0025  Score=38.49  Aligned_cols=18  Identities=11%  Similarity=-0.010  Sum_probs=15.4

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      .+|++|||||||++++..
T Consensus         5 l~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           5 LSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EECCTTSSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            369999999999988764

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.14  E-value=0.0023  Score=38.46  Aligned_cols=17  Identities=12%  Similarity=0.053  Sum_probs=15.4

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|++|+||+||++++..
T Consensus         9 ~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           9 LGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            69999999999998874

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.10  E-value=0.0024  Score=40.44  Aligned_cols=18  Identities=6%  Similarity=-0.012  Sum_probs=15.6

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|||||||++-+.+-
T Consensus        30 iGpnGaGKSTll~~i~Gl   47 (240)
T d2onka1          30 LGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             ECCTTSSHHHHHHHHHTS
T ss_pred             ECCCCChHHHHHHHHHcC
Confidence            588899999999988853

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.09  E-value=0.0025  Score=40.38  Aligned_cols=18  Identities=11%  Similarity=-0.053  Sum_probs=15.1

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|||||||++-+.+-
T Consensus        38 iGpsGaGKSTLl~~i~Gl   55 (239)
T d1v43a3          38 LGPSGCGKTTTLRMIAGL   55 (239)
T ss_dssp             ECCTTSSHHHHHHHHHTS
T ss_pred             ECCCCChHHHHHHHHHcC
Confidence            488899999999987753

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.06  E-value=0.0034  Score=36.75  Aligned_cols=17  Identities=18%  Similarity=-0.046  Sum_probs=13.7

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|.+||||||+.+.+..
T Consensus         7 iG~~G~GKSTig~~La~   23 (165)
T d2iyva1           7 VGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            38899999998777653

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.99  E-value=0.002  Score=38.21  Aligned_cols=16  Identities=13%  Similarity=-0.095  Sum_probs=14.1

Q ss_pred             eccCCCcceeeeeccc
Q psy2967          21 MRKITKGNVTIWPVPL   36 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~   36 (101)
                      +|.+||||||+.+.+.
T Consensus        25 ~G~pGSGKTTiAk~La   40 (195)
T d1x6va3          25 TGLSGAGKTTVSMALE   40 (195)
T ss_dssp             ESSCHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            4999999999998875

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=93.98  E-value=0.0023  Score=38.28  Aligned_cols=17  Identities=18%  Similarity=0.016  Sum_probs=14.9

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|+|||||||+.+++..
T Consensus         9 ~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           9 LGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999988774

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.96  E-value=0.0021  Score=39.86  Aligned_cols=17  Identities=12%  Similarity=-0.080  Sum_probs=14.9

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|++|+|||++++.+..
T Consensus        58 ~GPpG~GKTt~a~~la~   74 (253)
T d1sxja2          58 YGPPGIGKTTAAHLVAQ   74 (253)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999988775

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=93.90  E-value=0.0031  Score=39.89  Aligned_cols=17  Identities=12%  Similarity=0.110  Sum_probs=14.9

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|++|+|||||++-+.+
T Consensus        35 vG~sGsGKSTLl~ll~g   51 (241)
T d2pmka1          35 VGRSGSGKSTLTKLIQR   51 (241)
T ss_dssp             ECSTTSSHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHHh
Confidence            39999999999998874

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=93.89  E-value=0.0029  Score=37.13  Aligned_cols=17  Identities=12%  Similarity=0.073  Sum_probs=14.0

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|.+||||||+.+.+..
T Consensus         6 iG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           6 IGFMGSGKSTLARALAK   22 (161)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            48899999999877653

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=93.89  E-value=0.0031  Score=39.03  Aligned_cols=19  Identities=5%  Similarity=-0.060  Sum_probs=15.6

Q ss_pred             eEeccCCCcceeeeecccc
Q psy2967          19 FNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~   37 (101)
                      +-.|++|+|||++++.+..
T Consensus        47 ll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          47 TLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             EEECCTTSSHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            3359999999999988764

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=93.85  E-value=0.004  Score=37.62  Aligned_cols=24  Identities=13%  Similarity=0.073  Sum_probs=18.1

Q ss_pred             ccceeeeEeccCCCcceeeeecccc
Q psy2967          13 MIPTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        13 ~~~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      +.|++. ..|+|||||+|+...+..
T Consensus         2 ~~piI~-I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           2 IAPVIT-IDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             CSCEEE-EECCTTSSHHHHHHHHHH
T ss_pred             CCCEEE-EECCCCCCHHHHHHHHHH
Confidence            356553 359999999999888764

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=93.83  E-value=0.0029  Score=40.03  Aligned_cols=18  Identities=11%  Similarity=-0.053  Sum_probs=15.2

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|||||||++-+.+-
T Consensus        35 iG~sGaGKSTll~~i~gl   52 (240)
T d1g2912          35 LGPSGCGKTTTLRMIAGL   52 (240)
T ss_dssp             ECSTTSSHHHHHHHHHTS
T ss_pred             ECCCCChHHHHHHHHhcC
Confidence            488999999999988754

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.83  E-value=0.0032  Score=40.04  Aligned_cols=16  Identities=19%  Similarity=0.133  Sum_probs=14.2

Q ss_pred             ccCCCcceeeeecccc
Q psy2967          22 RKITKGNVTIWPVPLS   37 (101)
Q Consensus        22 G~~~vGKtsl~~~~~~   37 (101)
                      |++|||||||++-+.+
T Consensus        48 G~sGsGKSTLl~ll~g   63 (253)
T d3b60a1          48 GRSGSGKSTIASLITR   63 (253)
T ss_dssp             ECTTSSHHHHHHHHTT
T ss_pred             CCCCChHHHHHHHHhc
Confidence            8899999999988774

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.74  E-value=0.0034  Score=39.85  Aligned_cols=16  Identities=13%  Similarity=0.046  Sum_probs=14.4

Q ss_pred             ccCCCcceeeeecccc
Q psy2967          22 RKITKGNVTIWPVPLS   37 (101)
Q Consensus        22 G~~~vGKtsl~~~~~~   37 (101)
                      |+.|||||||++-+.+
T Consensus        47 G~sGsGKSTLl~li~g   62 (251)
T d1jj7a_          47 GPNGSGKSTVAALLQN   62 (251)
T ss_dssp             CSTTSSHHHHHHHHTT
T ss_pred             CCCCCcHHHHHHHHhc
Confidence            9999999999998774

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=93.70  E-value=0.0035  Score=39.59  Aligned_cols=17  Identities=18%  Similarity=0.141  Sum_probs=14.7

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|+.|+|||||++-+.+
T Consensus        34 vG~sGsGKSTLl~ll~g   50 (242)
T d1mv5a_          34 AGPSGGGKSTIFSLLER   50 (242)
T ss_dssp             ECCTTSSHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            39999999999988774

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=93.69  E-value=0.0033  Score=37.03  Aligned_cols=17  Identities=12%  Similarity=-0.126  Sum_probs=14.4

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|.+||||||+.+.+..
T Consensus         8 ~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           8 VGARGCGMTTVGRELAR   24 (170)
T ss_dssp             ESCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            58899999999888753

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.61  E-value=0.0029  Score=38.87  Aligned_cols=17  Identities=12%  Similarity=-0.156  Sum_probs=14.9

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|++|+|||++++.+..
T Consensus        51 ~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          51 AGPPGVGKTTAALALAR   67 (231)
T ss_dssp             ESCTTSSHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHH
Confidence            49999999999988764

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=93.53  E-value=0.0033  Score=39.43  Aligned_cols=17  Identities=12%  Similarity=0.038  Sum_probs=14.6

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|+.|+|||||++.+.+
T Consensus        31 iG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          31 VGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             BCCTTSSHHHHHHHHHT
T ss_pred             ECCCCCcHHHHHHHHhC
Confidence            37889999999998875

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.50  E-value=0.0036  Score=42.17  Aligned_cols=22  Identities=14%  Similarity=0.131  Sum_probs=16.0

Q ss_pred             EeccCCCcceeeee----ccccCcCC
Q psy2967          20 NMRKITKGNVTIWP----VPLSGQFS   41 (101)
Q Consensus        20 ~vG~~~vGKtsl~~----~~~~~~~~   41 (101)
                      -||+||||||+++.    ++..++.+
T Consensus        48 lvG~~GvGKtaiv~~la~~i~~~~vp   73 (387)
T d1qvra2          48 LIGEPGVGKTAIVEGLAQRIVKGDVP   73 (387)
T ss_dssp             EEECTTSCHHHHHHHHHHHHHHTCSC
T ss_pred             EECCCCCCHHHHHHHHHHHHHhCCCC
Confidence            46999999999885    44455544

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=93.50  E-value=0.0047  Score=37.20  Aligned_cols=17  Identities=18%  Similarity=0.008  Sum_probs=15.2

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|+|||||||+..++..
T Consensus        12 iG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1          12 MGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999988775

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=93.50  E-value=0.0061  Score=35.66  Aligned_cols=16  Identities=13%  Similarity=-0.062  Sum_probs=13.8

Q ss_pred             eccCCCcceeeeeccc
Q psy2967          21 MRKITKGNVTIWPVPL   36 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~   36 (101)
                      .|.+||||||+++.+.
T Consensus         7 ~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           7 TGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             EECTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            4889999999997775

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.45  E-value=0.0033  Score=38.57  Aligned_cols=16  Identities=13%  Similarity=-0.178  Sum_probs=13.8

Q ss_pred             eccCCCcceeeeeccc
Q psy2967          21 MRKITKGNVTIWPVPL   36 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~   36 (101)
                      .|++|+||||+++.+.
T Consensus        42 ~Gp~G~GKTt~a~~la   57 (224)
T d1sxjb2          42 SGMPGIGKTTSVHCLA   57 (224)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCchhhHHHHH
Confidence            4999999999988765

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=93.39  E-value=0.0024  Score=40.15  Aligned_cols=18  Identities=6%  Similarity=-0.031  Sum_probs=15.3

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|||||||++-+.+-
T Consensus        32 iGpsGaGKSTll~~l~Gl   49 (229)
T d3d31a2          32 LGPTGAGKTLFLELIAGF   49 (229)
T ss_dssp             ECCCTHHHHHHHHHHHTS
T ss_pred             ECCCCCcHHHHHHHHhcC
Confidence            388899999999998854

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.38  E-value=0.006  Score=37.80  Aligned_cols=24  Identities=17%  Similarity=0.126  Sum_probs=17.3

Q ss_pred             cceeeeEeccCCCcceeeeeccccC
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~~   38 (101)
                      ||+.-+ -|--|+|||||++++...
T Consensus         3 iPv~ii-tGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           3 IAVTLL-TGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEE-EESSSSSCHHHHHHHHHS
T ss_pred             CCEEEE-eeCCCCCHHHHHHHHHhc
Confidence            444332 377799999999998764

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=93.37  E-value=0.0052  Score=39.13  Aligned_cols=16  Identities=13%  Similarity=-0.012  Sum_probs=14.1

Q ss_pred             ccCCCcceeeeecccc
Q psy2967          22 RKITKGNVTIWPVPLS   37 (101)
Q Consensus        22 G~~~vGKtsl~~~~~~   37 (101)
                      |+.|+|||||++-+.+
T Consensus        51 G~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          51 GMSGGGKSTLINLIPR   66 (255)
T ss_dssp             CSTTSSHHHHHTTTTT
T ss_pred             CCCCCcHHHHHHHHHh
Confidence            9999999999987764

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.35  E-value=0.0037  Score=38.62  Aligned_cols=17  Identities=18%  Similarity=-0.021  Sum_probs=14.9

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|++|+|||++++.+..
T Consensus        39 ~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          39 YGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             ECSTTSSHHHHHHTHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999988765

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.26  E-value=0.0042  Score=40.06  Aligned_cols=17  Identities=12%  Similarity=0.180  Sum_probs=14.7

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|+.|+|||||++-+.+
T Consensus        68 vG~nGsGKSTLl~~i~G   84 (281)
T d1r0wa_          68 TGSTGSGKTSLLMLILG   84 (281)
T ss_dssp             EESTTSSHHHHHHHHHT
T ss_pred             ECCCCChHHHHHHHHhC
Confidence            38889999999988874

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.25  E-value=0.0037  Score=38.31  Aligned_cols=17  Identities=6%  Similarity=-0.087  Sum_probs=14.7

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|++|+|||++++.+..
T Consensus        39 ~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          39 YGPPGTGKTSTILALTK   55 (237)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCChHHHHHHHHH
Confidence            39999999999888764

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=93.13  E-value=0.0057  Score=37.56  Aligned_cols=16  Identities=13%  Similarity=-0.112  Sum_probs=13.6

Q ss_pred             eccCCCcceeeeeccc
Q psy2967          21 MRKITKGNVTIWPVPL   36 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~   36 (101)
                      .|.+|+|||||.+.+.
T Consensus        30 tGlsGsGKTTia~~L~   45 (208)
T d1m7ga_          30 TGLSASGKSTLAVELE   45 (208)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            3999999999987764

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=93.02  E-value=0.0052  Score=38.72  Aligned_cols=18  Identities=11%  Similarity=-0.032  Sum_probs=15.4

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++.+.+-
T Consensus        38 iGpnGaGKSTl~~~i~Gl   55 (240)
T d1ji0a_          38 IGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             ECSTTSSHHHHHHHHTTS
T ss_pred             ECCCCCcHHHHHHHHhCC
Confidence            388899999999998854

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=92.93  E-value=0.0087  Score=37.07  Aligned_cols=23  Identities=17%  Similarity=-0.036  Sum_probs=18.2

Q ss_pred             cceeeeEeccCCCcceeeeeccc
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPL   36 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~   36 (101)
                      -|.+-+-+|+.||||||.+-++.
T Consensus         8 ~p~vi~lvGptGvGKTTTiAKLA   30 (211)
T d2qy9a2           8 APFVILMVGVNGVGKTTTIGKLA   30 (211)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            46666667999999999887765

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.93  E-value=0.0044  Score=37.91  Aligned_cols=17  Identities=6%  Similarity=-0.081  Sum_probs=15.1

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|++|+|||++++.+..
T Consensus        41 ~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          41 YGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             ECSSSSSHHHHHHHHHH
T ss_pred             ECCCCCChhHHHHHHHH
Confidence            49999999999998875

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.92  E-value=0.0057  Score=38.63  Aligned_cols=21  Identities=14%  Similarity=0.015  Sum_probs=16.7

Q ss_pred             eeeE-eccCCCcceeeeecccc
Q psy2967          17 VGFN-MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        17 ~g~~-vG~~~vGKtsl~~~~~~   37 (101)
                      .|+- .|+||+|||++++.+..
T Consensus        39 ~giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHH
Confidence            4443 39999999999988775

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.92  E-value=0.0056  Score=39.03  Aligned_cols=18  Identities=11%  Similarity=-0.103  Sum_probs=15.2

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|||||||++.+.+-
T Consensus        34 iG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          34 IGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             ECCTTSSHHHHHHHHTTS
T ss_pred             ECCCCCcHHHHHHHHHcC
Confidence            388899999999988743

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=92.90  E-value=0.0089  Score=39.43  Aligned_cols=25  Identities=24%  Similarity=0.142  Sum_probs=19.8

Q ss_pred             ccceeeeEe-ccCCCcceeeeecccc
Q psy2967          13 MIPTVGFNM-RKITKGNVTIWPVPLS   37 (101)
Q Consensus        13 ~~~~~g~~v-G~~~vGKtsl~~~~~~   37 (101)
                      ++.++-+.+ |..||||||+++.+..
T Consensus         3 ~~~~~rI~iEG~iGsGKSTl~~~L~~   28 (333)
T d1p6xa_           3 MVTIVRIYLDGVYGIGKSTTGRVMAS   28 (333)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHS
T ss_pred             CCceEEEEEECCccCCHHHHHHHHHH
Confidence            455666666 9999999999988775

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=92.85  E-value=0.0091  Score=37.00  Aligned_cols=24  Identities=17%  Similarity=-0.074  Sum_probs=18.2

Q ss_pred             ccceeeeEeccCCCcceeeeeccc
Q psy2967          13 MIPTVGFNMRKITKGNVTIWPVPL   36 (101)
Q Consensus        13 ~~~~~g~~vG~~~vGKtsl~~~~~   36 (101)
                      .-|.+-+-+|+.||||||.+-++.
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLA   32 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLA   32 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            456666667999999999876655

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.82  E-value=0.0046  Score=36.61  Aligned_cols=18  Identities=11%  Similarity=0.121  Sum_probs=15.3

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      .|++|+|||+|+.++..+
T Consensus        29 ~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          29 FGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHHH
Confidence            499999999999888753

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.70  E-value=0.0098  Score=35.98  Aligned_cols=16  Identities=6%  Similarity=0.094  Sum_probs=13.7

Q ss_pred             eccCCCcceeeeeccc
Q psy2967          21 MRKITKGNVTIWPVPL   36 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~   36 (101)
                      -|++|||||||.+++.
T Consensus         8 ~G~~gSGKSTla~~L~   23 (213)
T d1uj2a_           8 SGGTASGKSSVCAKIV   23 (213)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            3999999999998764

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=92.69  E-value=0.0045  Score=37.57  Aligned_cols=16  Identities=13%  Similarity=0.135  Sum_probs=14.4

Q ss_pred             ccCCCcceeeeecccc
Q psy2967          22 RKITKGNVTIWPVPLS   37 (101)
Q Consensus        22 G~~~vGKtsl~~~~~~   37 (101)
                      |++||||||...++..
T Consensus        10 Gp~GsGKgT~ak~La~   25 (223)
T d1q3ta_          10 GPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CSSCSSHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            9999999999988775

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.65  E-value=0.0082  Score=36.82  Aligned_cols=18  Identities=6%  Similarity=0.014  Sum_probs=15.4

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      ..|++|+|||+|..+|..
T Consensus        41 i~G~pGsGKT~~~lq~~~   58 (254)
T d1pzna2          41 VFGEFGSGKTQLAHTLAV   58 (254)
T ss_dssp             EEESTTSSHHHHHHHHHH
T ss_pred             EEcCCCCCHHHHHHHHHH
Confidence            349999999999998874

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.63  E-value=0.0064  Score=38.56  Aligned_cols=18  Identities=17%  Similarity=0.017  Sum_probs=15.5

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      +|+.|+|||||++.+.+-
T Consensus        36 iG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          36 IGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             ECSTTSSHHHHHHHHTTS
T ss_pred             ECCCCCcHHHHHHHHHCC
Confidence            488899999999998864

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=92.61  E-value=0.0094  Score=39.29  Aligned_cols=24  Identities=13%  Similarity=0.029  Sum_probs=18.7

Q ss_pred             cceeeeEe-ccCCCcceeeeecccc
Q psy2967          14 IPTVGFNM-RKITKGNVTIWPVPLS   37 (101)
Q Consensus        14 ~~~~g~~v-G~~~vGKtsl~~~~~~   37 (101)
                      +.++.+.+ |..||||||+++.+..
T Consensus         3 m~~lrI~IEG~iGsGKSTl~~~L~~   27 (331)
T d1osna_           3 MGVLRIYLDGAYGIGKTTAAEEFLH   27 (331)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHH
Confidence            44555555 9999999999998875

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.49  E-value=0.0076  Score=36.85  Aligned_cols=16  Identities=19%  Similarity=0.196  Sum_probs=14.4

Q ss_pred             ccCCCcceeeeecccc
Q psy2967          22 RKITKGNVTIWPVPLS   37 (101)
Q Consensus        22 G~~~vGKtsl~~~~~~   37 (101)
                      |..||||||+++.+..
T Consensus         9 G~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           9 GNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             CSTTSSHHHHHTTTGG
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            8889999999998875

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.26  E-value=0.0031  Score=39.96  Aligned_cols=17  Identities=12%  Similarity=-0.009  Sum_probs=15.1

Q ss_pred             ccCCCcceeeeeccccC
Q psy2967          22 RKITKGNVTIWPVPLSG   38 (101)
Q Consensus        22 G~~~vGKtsl~~~~~~~   38 (101)
                      |++|||||||++.+.+-
T Consensus        38 G~sGsGKSTll~~i~gl   54 (242)
T d1oxxk2          38 GPSGAGKTTFMRIIAGL   54 (242)
T ss_dssp             CSCHHHHHHHHHHHHTS
T ss_pred             CCCCCcHHHHHHHHHcC
Confidence            88999999999998863

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.21  E-value=0.011  Score=35.85  Aligned_cols=18  Identities=6%  Similarity=0.080  Sum_probs=15.4

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      .|++|+|||+|..++...
T Consensus        40 ~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          40 FGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EESTTSSHHHHHHHHTTT
T ss_pred             EcCCCCCHHHHHHHHHHH
Confidence            499999999999888754

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=92.16  E-value=0.0058  Score=38.54  Aligned_cols=17  Identities=6%  Similarity=-0.046  Sum_probs=15.3

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|++|+|||++++.+..
T Consensus        48 ~GppGtGKT~la~aia~   64 (247)
T d1ixza_          48 VGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ecCCCCChhHHHHHHHH
Confidence            49999999999999884

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.72  E-value=0.0068  Score=36.40  Aligned_cols=15  Identities=13%  Similarity=-0.141  Sum_probs=13.0

Q ss_pred             ccCCCcceeeeeccc
Q psy2967          22 RKITKGNVTIWPVPL   36 (101)
Q Consensus        22 G~~~vGKtsl~~~~~   36 (101)
                      |..||||||+++.+.
T Consensus         7 G~dGsGKST~~~~L~   21 (208)
T d1gsia_           7 GVDGAGKRTLVEKLS   21 (208)
T ss_dssp             CSTTSSHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHH
Confidence            888999999988765

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=91.72  E-value=0.013  Score=36.10  Aligned_cols=18  Identities=11%  Similarity=-0.136  Sum_probs=14.2

Q ss_pred             eEeccCCCcceeeeeccc
Q psy2967          19 FNMRKITKGNVTIWPVPL   36 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~   36 (101)
                      +-+|+.||||||.+-++.
T Consensus        10 ~lvGptGvGKTTTiaKLA   27 (207)
T d1okkd2          10 LVVGVNGVGKTTTIAKLG   27 (207)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            346999999999876654

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=91.66  E-value=0.022  Score=35.70  Aligned_cols=20  Identities=30%  Similarity=0.183  Sum_probs=15.5

Q ss_pred             cceeeeEeccCCCcceeeee
Q psy2967          14 IPTVGFNMRKITKGNVTIWP   33 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~   33 (101)
                      +|.+-+..|..||||||+..
T Consensus         7 ~p~~i~~sGKGGVGKTTvaa   26 (296)
T d1ihua1           7 IPPYLFFTGKGGVGKTSISC   26 (296)
T ss_dssp             CCSEEEEECSTTSSHHHHHH
T ss_pred             CCeEEEEECCCcChHHHHHH
Confidence            36666778999999999653

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=91.59  E-value=0.0095  Score=38.66  Aligned_cols=16  Identities=13%  Similarity=-0.020  Sum_probs=14.0

Q ss_pred             eccCCCcceeeeeccc
Q psy2967          21 MRKITKGNVTIWPVPL   36 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~   36 (101)
                      +|++|+|||+|++++.
T Consensus        34 ~G~pG~GKT~lar~~~   49 (333)
T d1g8pa_          34 FGDRGTGKSTAVRALA   49 (333)
T ss_dssp             ECCGGGCTTHHHHHHH
T ss_pred             ECCCCccHHHHHHHHH
Confidence            4999999999998764

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=91.54  E-value=0.017  Score=34.27  Aligned_cols=23  Identities=22%  Similarity=0.118  Sum_probs=17.1

Q ss_pred             ceeeeEeccCCCcceeeeecccc
Q psy2967          15 PTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        15 ~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      |++--..|.+||||||+++.|..
T Consensus         3 p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            44433459999999999987764

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.07  E-value=0.013  Score=37.16  Aligned_cols=21  Identities=10%  Similarity=-0.067  Sum_probs=16.6

Q ss_pred             eeeE-eccCCCcceeeeecccc
Q psy2967          17 VGFN-MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        17 ~g~~-vG~~~vGKtsl~~~~~~   37 (101)
                      .|+- .|++|+|||+|++.+..
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~   63 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIAN   63 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcchhHHHHHHH
Confidence            3443 39999999999998774

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=90.89  E-value=0.017  Score=34.94  Aligned_cols=20  Identities=10%  Similarity=-0.031  Sum_probs=16.5

Q ss_pred             EeccCCCcceeeeeccccCc
Q psy2967          20 NMRKITKGNVTIWPVPLSGQ   39 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~~~   39 (101)
                      ..|++|+|||+|+.++..+.
T Consensus        39 i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          39 FAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEESTTSSHHHHHHHHHHHT
T ss_pred             EEeCCCCCHHHHHHHHHHHH
Confidence            34999999999999987543

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=90.74  E-value=0.0097  Score=36.01  Aligned_cols=16  Identities=19%  Similarity=0.063  Sum_probs=13.3

Q ss_pred             ccCCCcceeeeecccc
Q psy2967          22 RKITKGNVTIWPVPLS   37 (101)
Q Consensus        22 G~~~vGKtsl~~~~~~   37 (101)
                      |.+||||||++..+..
T Consensus         9 G~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           9 GLEGAGKTTARNVVVE   24 (210)
T ss_dssp             ECTTSCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            7789999998887653

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=90.74  E-value=0.018  Score=35.23  Aligned_cols=18  Identities=6%  Similarity=-0.003  Sum_probs=15.8

Q ss_pred             eccCCCcceeeeeccccC
Q psy2967          21 MRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~~   38 (101)
                      .|++|+|||+|+.++..+
T Consensus        32 ~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          32 TGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EECTTSSHHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHHH
Confidence            499999999999998865

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=90.57  E-value=0.019  Score=37.58  Aligned_cols=20  Identities=10%  Similarity=-0.077  Sum_probs=16.7

Q ss_pred             eEeccCCCcceeeeeccccC
Q psy2967          19 FNMRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~~   38 (101)
                      +..|+.|+|||||++.+..-
T Consensus       170 li~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         170 IVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             EEEESTTSSHHHHHHHHGGG
T ss_pred             EEEeeccccchHHHHHHhhh
Confidence            34599999999999998853

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=90.51  E-value=0.018  Score=36.47  Aligned_cols=17  Identities=6%  Similarity=-0.040  Sum_probs=15.0

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|+||+|||++++.+..
T Consensus        51 ~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          51 VGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             eCCCCCCccHHHHHHHH
Confidence            49999999999988774

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=90.31  E-value=0.0066  Score=35.52  Aligned_cols=15  Identities=13%  Similarity=-0.013  Sum_probs=12.9

Q ss_pred             ccCCCcceeeeeccc
Q psy2967          22 RKITKGNVTIWPVPL   36 (101)
Q Consensus        22 G~~~vGKtsl~~~~~   36 (101)
                      |+-|+|||||+..+.
T Consensus        31 G~NGsGKStil~Ai~   45 (222)
T d1qhla_          31 GGNGAGKSTTMAAFV   45 (222)
T ss_dssp             SCCSHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHH
Confidence            777999999998764

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.26  E-value=0.017  Score=35.22  Aligned_cols=17  Identities=6%  Similarity=0.075  Sum_probs=15.1

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|++|+|||+|..+|+.
T Consensus        43 ~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          43 FGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             ECCTTCTHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998874

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=90.14  E-value=0.026  Score=34.66  Aligned_cols=18  Identities=17%  Similarity=0.010  Sum_probs=14.5

Q ss_pred             eEeccCCCcceeeeeccc
Q psy2967          19 FNMRKITKGNVTIWPVPL   36 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~   36 (101)
                      +-+|+.||||||.+-++.
T Consensus        14 ~lvGp~GvGKTTTiaKLA   31 (207)
T d1ls1a2          14 FLVGLQGSGKTTTAAKLA   31 (207)
T ss_dssp             EEECCTTTTHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            446999999999887765

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=90.03  E-value=0.027  Score=36.67  Aligned_cols=23  Identities=22%  Similarity=0.095  Sum_probs=16.8

Q ss_pred             cceeeeEeccCCCcceeeeeccc
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPL   36 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~   36 (101)
                      .|.+--..|++||||||+.+.+.
T Consensus        79 ~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          79 IPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCCcHHHHHHH
Confidence            45444446999999999877654

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=89.98  E-value=0.025  Score=34.26  Aligned_cols=22  Identities=18%  Similarity=0.067  Sum_probs=16.7

Q ss_pred             eeeeEeccCCCcceeeeeccccC
Q psy2967          16 TVGFNMRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        16 ~~g~~vG~~~vGKtsl~~~~~~~   38 (101)
                      ++|+ .|..||||||..+.|...
T Consensus         5 iIgi-tG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           5 IVAL-TGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEE-ECCTTSCHHHHHHHHHHT
T ss_pred             EEEE-ECCCcCCHHHHHHHHHHC
Confidence            4554 599999999999877643

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=89.76  E-value=0.015  Score=35.08  Aligned_cols=17  Identities=12%  Similarity=-0.136  Sum_probs=14.1

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|++|+|||+|+.+++.
T Consensus        32 ~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          32 SGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHH
Confidence            39999999999887653

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.47  E-value=0.019  Score=36.43  Aligned_cols=17  Identities=24%  Similarity=0.214  Sum_probs=14.1

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|.+|+|||+|+..+.+
T Consensus        50 ~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          50 HGRAGSGKSVIASQALS   66 (277)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            48899999999987653

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.43  E-value=0.027  Score=34.42  Aligned_cols=16  Identities=19%  Similarity=0.162  Sum_probs=14.0

Q ss_pred             ccCCCcceeeeecccc
Q psy2967          22 RKITKGNVTIWPVPLS   37 (101)
Q Consensus        22 G~~~vGKtsl~~~~~~   37 (101)
                      |..||||||+++.+..
T Consensus         9 G~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           9 GNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             ECTTSSHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHH
Confidence            8889999999988764

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=89.41  E-value=0.026  Score=35.09  Aligned_cols=17  Identities=6%  Similarity=-0.203  Sum_probs=14.2

Q ss_pred             EeccCCCcceeeeeccc
Q psy2967          20 NMRKITKGNVTIWPVPL   36 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~   36 (101)
                      ..|++|+|||+|+..+.
T Consensus        34 i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          34 LVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEESTTSSHHHHHHHHH
T ss_pred             EEeCCCCCHHHHHHHHH
Confidence            35999999999987765

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=89.35  E-value=0.025  Score=38.57  Aligned_cols=24  Identities=13%  Similarity=-0.010  Sum_probs=17.7

Q ss_pred             cceeeeEeccCCCcceeeeecccc
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      .|-=-+-+|++|||||-|++++..
T Consensus        48 ~ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          48 TPKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ccccEEEECCCCCCHHHHHHHHHH
Confidence            343334569999999999988764

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=89.26  E-value=0.025  Score=37.08  Aligned_cols=17  Identities=12%  Similarity=-0.038  Sum_probs=14.9

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|+||+|||.|++.+..
T Consensus       129 ~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         129 TGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             ECSSSSCHHHHHHHHHH
T ss_pred             ECCCCccHHHHHHHHHH
Confidence            39999999999988774

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=88.65  E-value=0.034  Score=33.36  Aligned_cols=16  Identities=6%  Similarity=-0.153  Sum_probs=13.9

Q ss_pred             ccCCCcceeeeecccc
Q psy2967          22 RKITKGNVTIWPVPLS   37 (101)
Q Consensus        22 G~~~vGKtsl~~~~~~   37 (101)
                      |++|+|||+++..+..
T Consensus        21 G~sG~GKStlal~l~~   36 (176)
T d1kkma_          21 GDSGVGKSETALELVQ   36 (176)
T ss_dssp             CCTTSCHHHHHHHHHH
T ss_pred             eCCCCCHHHHHHHHHH
Confidence            9999999999877664

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=88.44  E-value=0.045  Score=32.96  Aligned_cols=20  Identities=30%  Similarity=0.316  Sum_probs=15.6

Q ss_pred             eeeEeccCCCcceeeeecccc
Q psy2967          17 VGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        17 ~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      +|+ .|..||||||+.+.|..
T Consensus         5 IgI-TG~igSGKStv~~~l~~   24 (205)
T d1jjva_           5 VGL-TGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEE-ECSTTSCHHHHHHHHHT
T ss_pred             EEE-ECCCCCCHHHHHHHHHH
Confidence            443 49999999999887754

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=88.42  E-value=0.028  Score=35.50  Aligned_cols=15  Identities=13%  Similarity=0.049  Sum_probs=12.7

Q ss_pred             eccCCCcceeeeecc
Q psy2967          21 MRKITKGNVTIWPVP   35 (101)
Q Consensus        21 vG~~~vGKtsl~~~~   35 (101)
                      +|+-|+|||+++..+
T Consensus        30 vG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          30 VGPNGSGKSNIIDAI   44 (308)
T ss_dssp             ECCTTTCSTHHHHHH
T ss_pred             ECCCCCcHHHHHHHH
Confidence            499999999998654

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.38  E-value=0.019  Score=35.04  Aligned_cols=16  Identities=13%  Similarity=-0.128  Sum_probs=12.8

Q ss_pred             ccCCCcceeeeecccc
Q psy2967          22 RKITKGNVTIWPVPLS   37 (101)
Q Consensus        22 G~~~vGKtsl~~~~~~   37 (101)
                      |..||||||+++.+.+
T Consensus        10 G~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_          10 GVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             ESTTSSHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            8889999997776543

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=88.22  E-value=0.043  Score=32.95  Aligned_cols=16  Identities=6%  Similarity=-0.112  Sum_probs=14.1

Q ss_pred             ccCCCcceeeeecccc
Q psy2967          22 RKITKGNVTIWPVPLS   37 (101)
Q Consensus        22 G~~~vGKtsl~~~~~~   37 (101)
                      |++|+|||+++..+..
T Consensus        22 G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          22 GRSGIGKSECALDLIN   37 (177)
T ss_dssp             ESSSSSHHHHHHHHHT
T ss_pred             cCCCCCHHHHHHHHHH
Confidence            9999999999877665

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=88.16  E-value=0.027  Score=36.52  Aligned_cols=17  Identities=6%  Similarity=-0.122  Sum_probs=14.3

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      +|++|||||.|++.+..
T Consensus        58 ~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          58 AGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCcchhHHHHHHHHh
Confidence            59999999999877653

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=88.07  E-value=0.035  Score=34.79  Aligned_cols=14  Identities=7%  Similarity=0.183  Sum_probs=11.1

Q ss_pred             eEeccCCCcceeee
Q psy2967          19 FNMRKITKGNVTIW   32 (101)
Q Consensus        19 ~~vG~~~vGKtsl~   32 (101)
                      +.+|.+|+|||+.+
T Consensus        18 lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          18 LVLAGAGSGKTRVI   31 (306)
T ss_dssp             EECCCTTSCHHHHH
T ss_pred             EEEeeCCccHHHHH
Confidence            34599999999764

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=88.04  E-value=0.049  Score=35.71  Aligned_cols=16  Identities=13%  Similarity=0.038  Sum_probs=14.5

Q ss_pred             ccCCCcceeeeecccc
Q psy2967          22 RKITKGNVTIWPVPLS   37 (101)
Q Consensus        22 G~~~vGKtsl~~~~~~   37 (101)
                      |.-||||||+++.+..
T Consensus        11 G~iGsGKTTl~~~La~   26 (329)
T d1e2ka_          11 GPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             SCTTSSHHHHHHHHTC
T ss_pred             CCcCCCHHHHHHHHHH
Confidence            9999999999998874

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=87.64  E-value=0.044  Score=34.70  Aligned_cols=13  Identities=15%  Similarity=0.197  Sum_probs=10.6

Q ss_pred             EeccCCCcceeee
Q psy2967          20 NMRKITKGNVTIW   32 (101)
Q Consensus        20 ~vG~~~vGKtsl~   32 (101)
                      ..|.+|+|||+.+
T Consensus        29 V~g~aGSGKTt~l   41 (318)
T d1pjra1          29 IMAGAGSGKTRVL   41 (318)
T ss_dssp             EEECTTSCHHHHH
T ss_pred             EEecCCccHHHHH
Confidence            4599999999764

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.04  E-value=0.03  Score=34.14  Aligned_cols=15  Identities=13%  Similarity=0.000  Sum_probs=12.3

Q ss_pred             ccCCCcceeeeeccc
Q psy2967          22 RKITKGNVTIWPVPL   36 (101)
Q Consensus        22 G~~~vGKtsl~~~~~   36 (101)
                      |..||||||+++.+.
T Consensus        10 G~DGsGKST~~~~L~   24 (214)
T d1tmka_          10 GLDRTGKTTQCNILY   24 (214)
T ss_dssp             ESTTSSHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHH
Confidence            777999999877654

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=87.02  E-value=0.03  Score=37.17  Aligned_cols=16  Identities=25%  Similarity=0.258  Sum_probs=13.5

Q ss_pred             eccCCCcceeeeeccc
Q psy2967          21 MRKITKGNVTIWPVPL   36 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~   36 (101)
                      .|+||+|||++.+.+.
T Consensus       160 ~g~~~~gk~~~~~~~~  175 (362)
T d1svma_         160 KGPIDSGKTTLAAALL  175 (362)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            3999999999987654

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=87.01  E-value=0.049  Score=32.41  Aligned_cols=16  Identities=6%  Similarity=-0.143  Sum_probs=13.3

Q ss_pred             ccCCCcceeeeecccc
Q psy2967          22 RKITKGNVTIWPVPLS   37 (101)
Q Consensus        22 G~~~vGKtsl~~~~~~   37 (101)
                      |++|+|||++...+..
T Consensus        22 G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2          22 GDSGIGKSETALELIK   37 (169)
T ss_dssp             ESTTSSHHHHHHHHHH
T ss_pred             eCCCCCHHHHHHHHHH
Confidence            9999999998866554

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=86.58  E-value=0.051  Score=33.86  Aligned_cols=17  Identities=12%  Similarity=-0.091  Sum_probs=14.2

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|.+|+|||+|+..+..
T Consensus        41 ~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          41 TSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHH
Confidence            48999999999877664

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.52  E-value=0.045  Score=35.73  Aligned_cols=15  Identities=7%  Similarity=0.054  Sum_probs=13.2

Q ss_pred             eccCCCcceeeeecc
Q psy2967          21 MRKITKGNVTIWPVP   35 (101)
Q Consensus        21 vG~~~vGKtsl~~~~   35 (101)
                      +|+-|+|||+++..+
T Consensus        31 ~G~NGsGKS~ileAi   45 (427)
T d1w1wa_          31 IGPNGSGKSNMMDAI   45 (427)
T ss_dssp             ECSTTSSHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHH
Confidence            499999999998875

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=86.24  E-value=0.033  Score=34.33  Aligned_cols=19  Identities=11%  Similarity=-0.029  Sum_probs=15.1

Q ss_pred             eEeccCCCcceeeeecccc
Q psy2967          19 FNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        19 ~~vG~~~vGKtsl~~~~~~   37 (101)
                      +-.|++|+|||++++.+..
T Consensus        38 Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          38 LFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEECSTTSSHHHHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHHH
Confidence            3359999999999887653

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.15  E-value=0.063  Score=34.52  Aligned_cols=21  Identities=14%  Similarity=-0.047  Sum_probs=15.3

Q ss_pred             cc-eeeeEeccCCCcceeeeecc
Q psy2967          14 IP-TVGFNMRKITKGNVTIWPVP   35 (101)
Q Consensus        14 ~~-~~g~~vG~~~vGKtsl~~~~   35 (101)
                      -| ++|+ .|.+|||||||...+
T Consensus        26 ~P~iIGi-~G~qGSGKSTl~~~l   47 (286)
T d1odfa_          26 CPLFIFF-SGPQGSGKSFTSIQI   47 (286)
T ss_dssp             SCEEEEE-ECCTTSSHHHHHHHH
T ss_pred             CCEEEEe-ECCCCCCHHHHHHHH
Confidence            45 4454 499999999987654

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=84.76  E-value=0.043  Score=33.28  Aligned_cols=24  Identities=4%  Similarity=-0.273  Sum_probs=17.2

Q ss_pred             cceeeeEeccCCCcceeeeecccc
Q psy2967          14 IPTVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        14 ~~~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      +|-.-+-.|++|+|||++++.+..
T Consensus        23 l~h~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          23 GHHALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             CCSEEEEECCTTSCHHHHHHHHHH
T ss_pred             cCeEEEEECCCCCcHHHHHHHHHH
Confidence            343333369999999999987654

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=83.85  E-value=0.045  Score=33.45  Aligned_cols=17  Identities=6%  Similarity=0.137  Sum_probs=14.8

Q ss_pred             eccCCCcceeeeecccc
Q psy2967          21 MRKITKGNVTIWPVPLS   37 (101)
Q Consensus        21 vG~~~vGKtsl~~~~~~   37 (101)
                      .|++|+|||-|++.+..
T Consensus        42 ~G~~G~GKTHLl~A~~~   58 (213)
T d1l8qa2          42 YGSVGTGKTHLLQAAGN   58 (213)
T ss_dssp             ECSSSSSHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHH
Confidence            49999999999988765

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=83.68  E-value=0.091  Score=32.00  Aligned_cols=21  Identities=14%  Similarity=-0.046  Sum_probs=16.3

Q ss_pred             eeeeEeccCCCcceeeeecccc
Q psy2967          16 TVGFNMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        16 ~~g~~vG~~~vGKtsl~~~~~~   37 (101)
                      ++|+ .|..||||||..+.|..
T Consensus         3 iIgi-TG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFL-SGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEE-ECCTTSSHHHHHHHHHH
T ss_pred             EEEE-ECCCCCCHHHHHHHHHH
Confidence            4554 39999999999888754

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=82.73  E-value=0.081  Score=35.33  Aligned_cols=22  Identities=18%  Similarity=0.135  Sum_probs=17.7

Q ss_pred             eeeEe--ccCCCcceeeeeccccC
Q psy2967          17 VGFNM--RKITKGNVTIWPVPLSG   38 (101)
Q Consensus        17 ~g~~v--G~~~vGKtsl~~~~~~~   38 (101)
                      -|+.+  |+.|+||||.++.++..
T Consensus       158 ~GliLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         158 HGIILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             hceEEEEcCCCCCccHHHHHHhhh
Confidence            35554  99999999999998763

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=82.23  E-value=0.094  Score=34.66  Aligned_cols=18  Identities=6%  Similarity=-0.040  Sum_probs=15.0

Q ss_pred             EeccCCCcceeeeecccc
Q psy2967          20 NMRKITKGNVTIWPVPLS   37 (101)
Q Consensus        20 ~vG~~~vGKtsl~~~~~~   37 (101)
                      -+|+.|||||-|++++..
T Consensus        73 fiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          73 LIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             EECCTTSSHHHHHHHHHH
T ss_pred             eeCCCCccHHHHHHHHHh
Confidence            369999999999988753

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=81.69  E-value=0.094  Score=34.62  Aligned_cols=21  Identities=5%  Similarity=-0.165  Sum_probs=16.5

Q ss_pred             eeEeccCCCcceeeeeccccC
Q psy2967          18 GFNMRKITKGNVTIWPVPLSG   38 (101)
Q Consensus        18 g~~vG~~~vGKtsl~~~~~~~   38 (101)
                      -+.+|.+|+|||+++..++..
T Consensus        53 ~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          53 LLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             EEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHH
Confidence            356799999999998776643