Psyllid ID: psy2970
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 329 | 2.2.26 [Sep-21-2011] | |||||||
| Q6NZW8 | 186 | ADP-ribosylation factor-l | yes | N/A | 0.446 | 0.790 | 0.675 | 1e-67 | |
| Q66HA6 | 186 | ADP-ribosylation factor-l | yes | N/A | 0.446 | 0.790 | 0.659 | 2e-66 | |
| Q9CQW2 | 186 | ADP-ribosylation factor-l | yes | N/A | 0.446 | 0.790 | 0.659 | 2e-66 | |
| Q9NVJ2 | 186 | ADP-ribosylation factor-l | yes | N/A | 0.446 | 0.790 | 0.659 | 2e-66 | |
| Q9VHV5 | 186 | ADP-ribosylation factor-l | yes | N/A | 0.446 | 0.790 | 0.675 | 2e-66 | |
| Q4R4S4 | 186 | ADP-ribosylation factor-l | N/A | N/A | 0.446 | 0.790 | 0.654 | 3e-66 | |
| Q2KI07 | 186 | ADP-ribosylation factor-l | yes | N/A | 0.446 | 0.790 | 0.654 | 5e-66 | |
| Q5R6E7 | 186 | ADP-ribosylation factor-l | yes | N/A | 0.446 | 0.790 | 0.654 | 2e-65 | |
| Q96BM9 | 186 | ADP-ribosylation factor-l | no | N/A | 0.446 | 0.790 | 0.654 | 8e-65 | |
| Q6P8C8 | 186 | ADP-ribosylation factor-l | no | N/A | 0.446 | 0.790 | 0.654 | 1e-64 |
| >sp|Q6NZW8|AR8BA_DANRE ADP-ribosylation factor-like protein 8B-A OS=Danio rerio GN=arl8ba PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 256 bits (654), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 127/188 (67%), Positives = 141/188 (75%), Gaps = 41/188 (21%)
Query: 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI 60
M L+NR+LDWFKSLFWKEEMELTLVGLQ SGKTTFVNVIASGQFS+DMIPTVGFNMRK+
Sbjct: 1 MLALINRLLDWFKSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV 60
Query: 61 TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGV 120
TKGNVTIK+WDIGGQPRFRSMWERYCRGVNAIV
Sbjct: 61 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIV--------------------------- 93
Query: 121 SGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD 180
YMVDAAD +K+EASRNELH L++KPQL GIP+LVLGNKRDLPNALD
Sbjct: 94 --------------YMVDAADREKVEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALD 139
Query: 181 EKELIDRI 188
EK+LI+++
Sbjct: 140 EKQLIEKM 147
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Danio rerio (taxid: 7955) |
| >sp|Q66HA6|ARL8B_RAT ADP-ribosylation factor-like protein 8B OS=Rattus norvegicus GN=Arl8b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 253 bits (646), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 124/188 (65%), Positives = 141/188 (75%), Gaps = 41/188 (21%)
Query: 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI 60
M L++R+LDWF+SLFWKEEMELTLVGLQ SGKTTFVNVIASGQFS+DMIPTVGFNMRK+
Sbjct: 1 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV 60
Query: 61 TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGV 120
TKGNVTIK+WDIGGQPRFRSMWERYCRGVNAIV
Sbjct: 61 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIV--------------------------- 93
Query: 121 SGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD 180
YM+DAAD +K+EASRNELH L++KPQL GIP+LVLGNKRDLPNALD
Sbjct: 94 --------------YMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALD 139
Query: 181 EKELIDRI 188
EK+LI+++
Sbjct: 140 EKQLIEKM 147
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Rattus norvegicus (taxid: 10116) |
| >sp|Q9CQW2|ARL8B_MOUSE ADP-ribosylation factor-like protein 8B OS=Mus musculus GN=Arl8b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 253 bits (646), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 124/188 (65%), Positives = 141/188 (75%), Gaps = 41/188 (21%)
Query: 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI 60
M L++R+LDWF+SLFWKEEMELTLVGLQ SGKTTFVNVIASGQFS+DMIPTVGFNMRK+
Sbjct: 1 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV 60
Query: 61 TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGV 120
TKGNVTIK+WDIGGQPRFRSMWERYCRGVNAIV
Sbjct: 61 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIV--------------------------- 93
Query: 121 SGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD 180
YM+DAAD +K+EASRNELH L++KPQL GIP+LVLGNKRDLPNALD
Sbjct: 94 --------------YMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALD 139
Query: 181 EKELIDRI 188
EK+LI+++
Sbjct: 140 EKQLIEKM 147
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Mus musculus (taxid: 10090) |
| >sp|Q9NVJ2|ARL8B_HUMAN ADP-ribosylation factor-like protein 8B OS=Homo sapiens GN=ARL8B PE=1 SV=1 | Back alignment and function description |
|---|
Score = 253 bits (646), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 124/188 (65%), Positives = 141/188 (75%), Gaps = 41/188 (21%)
Query: 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI 60
M L++R+LDWF+SLFWKEEMELTLVGLQ SGKTTFVNVIASGQFS+DMIPTVGFNMRK+
Sbjct: 1 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV 60
Query: 61 TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGV 120
TKGNVTIK+WDIGGQPRFRSMWERYCRGVNAIV
Sbjct: 61 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIV--------------------------- 93
Query: 121 SGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD 180
YM+DAAD +K+EASRNELH L++KPQL GIP+LVLGNKRDLPNALD
Sbjct: 94 --------------YMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALD 139
Query: 181 EKELIDRI 188
EK+LI+++
Sbjct: 140 EKQLIEKM 147
|
May play a role in lysosome motility (PubMed:16537643). May play a role in chromosome segregation (PubMed:15331635). Homo sapiens (taxid: 9606) |
| >sp|Q9VHV5|ARL8_DROME ADP-ribosylation factor-like protein 8 OS=Drosophila melanogaster GN=Gie PE=1 SV=1 | Back alignment and function description |
|---|
Score = 253 bits (645), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 127/188 (67%), Positives = 139/188 (73%), Gaps = 41/188 (21%)
Query: 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI 60
M L+NRIL+WFKS+FWKEEMELTLVGLQ SGKTTFVNVIASGQF++DMIPTVGFNMRKI
Sbjct: 1 MLALINRILEWFKSIFWKEEMELTLVGLQFSGKTTFVNVIASGQFAEDMIPTVGFNMRKI 60
Query: 61 TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGV 120
T+GNVTIKVWDIGGQPRFRSMWERYCRGVNAIV
Sbjct: 61 TRGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV--------------------------- 93
Query: 121 SGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD 180
YMVDAAD DKLEASRNELH+L++KPQL GIP+LVLGNKRDLP ALD
Sbjct: 94 --------------YMVDAADLDKLEASRNELHSLLDKPQLAGIPVLVLGNKRDLPGALD 139
Query: 181 EKELIDRI 188
E LI+R+
Sbjct: 140 ETGLIERM 147
|
May play a role in lysosome motility (PubMed:16537643). Essential role in chromosome segregation (PubMed:15331635). Drosophila melanogaster (taxid: 7227) |
| >sp|Q4R4S4|ARL8B_MACFA ADP-ribosylation factor-like protein 8B OS=Macaca fascicularis GN=ARL8B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 252 bits (643), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 123/188 (65%), Positives = 141/188 (75%), Gaps = 41/188 (21%)
Query: 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI 60
M L++R+LDWF+SLFWKEEMELTLVGLQ SGKTTFVNVIASGQFS+DMIPTVGFNMRK+
Sbjct: 1 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV 60
Query: 61 TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGV 120
TKGNVTIK+WDIGGQPR+RSMWERYCRGVNAIV
Sbjct: 61 TKGNVTIKIWDIGGQPRYRSMWERYCRGVNAIV--------------------------- 93
Query: 121 SGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD 180
YM+DAAD +K+EASRNELH L++KPQL GIP+LVLGNKRDLPNALD
Sbjct: 94 --------------YMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALD 139
Query: 181 EKELIDRI 188
EK+LI+++
Sbjct: 140 EKQLIEKM 147
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Macaca fascicularis (taxid: 9541) |
| >sp|Q2KI07|ARL8B_BOVIN ADP-ribosylation factor-like protein 8B OS=Bos taurus GN=ARL8B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 251 bits (641), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 123/188 (65%), Positives = 141/188 (75%), Gaps = 41/188 (21%)
Query: 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI 60
M L++R+LDWF+SLFWKEEMELTLVGLQ SGKTTFVNVIASGQFS+DMIPTVGFNMRK+
Sbjct: 1 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV 60
Query: 61 TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGV 120
TKGNVTIK+WDIGGQPRF+SMWERYCRGVNAIV
Sbjct: 61 TKGNVTIKIWDIGGQPRFQSMWERYCRGVNAIV--------------------------- 93
Query: 121 SGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD 180
YM+DAAD +K+EASRNELH L++KPQL GIP+LVLGNKRDLPNALD
Sbjct: 94 --------------YMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALD 139
Query: 181 EKELIDRI 188
EK+LI+++
Sbjct: 140 EKQLIEKM 147
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Bos taurus (taxid: 9913) |
| >sp|Q5R6E7|ARL8B_PONAB ADP-ribosylation factor-like protein 8B OS=Pongo abelii GN=ARL8B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 249 bits (636), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 123/188 (65%), Positives = 140/188 (74%), Gaps = 41/188 (21%)
Query: 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI 60
M L++R+LDWF+SLFWKEEMELTLVGLQ SGKTTFVNVIASGQFS+DMIPTVGFNMRK+
Sbjct: 1 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV 60
Query: 61 TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGV 120
TKGNVTIK+WDIGGQPRFRSMWERYCRGVNAIV
Sbjct: 61 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIV--------------------------- 93
Query: 121 SGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD 180
YM+DAA +K+EASRNELH L++KPQL GIP+LVLGNKRDLPNALD
Sbjct: 94 --------------YMIDAAYREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALD 139
Query: 181 EKELIDRI 188
EK+LI+++
Sbjct: 140 EKQLIEKM 147
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Pongo abelii (taxid: 9601) |
| >sp|Q96BM9|ARL8A_HUMAN ADP-ribosylation factor-like protein 8A OS=Homo sapiens GN=ARL8A PE=1 SV=1 | Back alignment and function description |
|---|
Score = 247 bits (631), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 123/188 (65%), Positives = 139/188 (73%), Gaps = 41/188 (21%)
Query: 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI 60
M L N++LDWFK+LFWKEEMELTLVGLQ SGKTTFVNVIASGQF++DMIPTVGFNMRKI
Sbjct: 1 MIALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI 60
Query: 61 TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGV 120
TKGNVTIK+WDIGGQPRFRSMWERYCRGV+AIV
Sbjct: 61 TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV--------------------------- 93
Query: 121 SGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD 180
YMVDAAD +K+EAS+NELH L++KPQL GIP+LVLGNKRDLP ALD
Sbjct: 94 --------------YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD 139
Query: 181 EKELIDRI 188
EKELI+++
Sbjct: 140 EKELIEKM 147
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Homo sapiens (taxid: 9606) |
| >sp|Q6P8C8|ARL8A_XENTR ADP-ribosylation factor-like protein 8A OS=Xenopus tropicalis GN=arl8a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 247 bits (630), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 123/188 (65%), Positives = 138/188 (73%), Gaps = 41/188 (21%)
Query: 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI 60
M L N++LDWFK+LFWKEEMELTLVGLQ SGKTTFVNVIASGQF++DMIPTVGFNMRKI
Sbjct: 1 MLALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI 60
Query: 61 TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGV 120
TKGNVTIK+WDIGGQPRFRSMWERYCRGV+AIV
Sbjct: 61 TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV--------------------------- 93
Query: 121 SGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD 180
YMVDAAD DK+EAS+NELH L++K QL GIP+LVLGNKRD+P ALD
Sbjct: 94 --------------YMVDAADQDKIEASKNELHNLLDKAQLQGIPVLVLGNKRDIPGALD 139
Query: 181 EKELIDRI 188
EKELI+R+
Sbjct: 140 EKELIERM 147
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Xenopus tropicalis (taxid: 8364) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 329 | ||||||
| 328712016 | 189 | PREDICTED: ADP-ribosylation factor-like | 0.455 | 0.793 | 0.680 | 1e-66 | |
| 321464540 | 187 | hypothetical protein DAPPUDRAFT_306725 [ | 0.446 | 0.786 | 0.696 | 4e-66 | |
| 195453767 | 186 | GK14379 [Drosophila willistoni] gi|19417 | 0.446 | 0.790 | 0.686 | 6e-66 | |
| 45387563 | 186 | ADP-ribosylation factor-like protein 8B- | 0.446 | 0.790 | 0.675 | 9e-66 | |
| 432859428 | 186 | PREDICTED: ADP-ribosylation factor-like | 0.446 | 0.790 | 0.670 | 1e-65 | |
| 348510263 | 186 | PREDICTED: ADP-ribosylation factor-like | 0.446 | 0.790 | 0.670 | 2e-65 | |
| 47227344 | 283 | unnamed protein product [Tetraodon nigro | 0.446 | 0.519 | 0.664 | 2e-65 | |
| 195108875 | 186 | GI23307 [Drosophila mojavensis] gi|19391 | 0.446 | 0.790 | 0.686 | 3e-65 | |
| 195330792 | 256 | GM23705 [Drosophila sechellia] gi|194121 | 0.446 | 0.574 | 0.675 | 3e-65 | |
| 125774813 | 186 | GA20665 [Drosophila pseudoobscura pseudo | 0.446 | 0.790 | 0.680 | 3e-65 |
| >gi|328712016|ref|XP_003244709.1| PREDICTED: ADP-ribosylation factor-like protein 8B-A-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 130/191 (68%), Positives = 140/191 (73%), Gaps = 41/191 (21%)
Query: 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI 60
M L+NRILDW KS FW EEMELTLVGLQCSGKTTFV+VIASGQF+QDMIPTVGFNMRK+
Sbjct: 1 MMTLINRILDWIKSKFWTEEMELTLVGLQCSGKTTFVHVIASGQFNQDMIPTVGFNMRKV 60
Query: 61 TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGV 120
TK NVTIK+WDIGGQPRFRSMWERYCRGVNAIV
Sbjct: 61 TKNNVTIKIWDIGGQPRFRSMWERYCRGVNAIV--------------------------- 93
Query: 121 SGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD 180
YMVDAADTDKLEASRNELH LI+KPQL GIP+LVLGNKRDLPNALD
Sbjct: 94 --------------YMVDAADTDKLEASRNELHNLIDKPQLAGIPVLVLGNKRDLPNALD 139
Query: 181 EKELIDRIMID 191
E ELIDR+ ++
Sbjct: 140 EVELIDRMNLN 150
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|321464540|gb|EFX75547.1| hypothetical protein DAPPUDRAFT_306725 [Daphnia pulex] | Back alignment and taxonomy information |
|---|
Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 131/188 (69%), Positives = 140/188 (74%), Gaps = 41/188 (21%)
Query: 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI 60
MF L+NRILDWFKSLFWKEEMELTLVGLQ SGKTTFVNVIASGQFS+DMIPTVGFNMRKI
Sbjct: 1 MFALVNRILDWFKSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKI 60
Query: 61 TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGV 120
TKGNVTIK+WDIGGQPRFRSMWERYCRGVNAIV
Sbjct: 61 TKGNVTIKLWDIGGQPRFRSMWERYCRGVNAIV--------------------------- 93
Query: 121 SGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD 180
YMVDAAD DK+EASRNELH L++KPQL GIP+LVLGNKRDLPNALD
Sbjct: 94 --------------YMVDAADHDKIEASRNELHHLLDKPQLAGIPVLVLGNKRDLPNALD 139
Query: 181 EKELIDRI 188
E LI+R+
Sbjct: 140 ENGLIERM 147
|
Source: Daphnia pulex Species: Daphnia pulex Genus: Daphnia Family: Daphniidae Order: Diplostraca Class: Branchiopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195453767|ref|XP_002073933.1| GK14379 [Drosophila willistoni] gi|194170018|gb|EDW84919.1| GK14379 [Drosophila willistoni] | Back alignment and taxonomy information |
|---|
Score = 257 bits (656), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 129/188 (68%), Positives = 140/188 (74%), Gaps = 41/188 (21%)
Query: 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI 60
M L+NRILDWFKS+FWKEEMELTLVGLQ SGKTTFVNVIASGQF++DMIPTVGFNMRKI
Sbjct: 1 MLALINRILDWFKSIFWKEEMELTLVGLQFSGKTTFVNVIASGQFAEDMIPTVGFNMRKI 60
Query: 61 TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGV 120
TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV
Sbjct: 61 TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV--------------------------- 93
Query: 121 SGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD 180
YMVDAAD DKLEASRNELH+L++KPQL+GIP+LVLGNKRDLP ALD
Sbjct: 94 --------------YMVDAADLDKLEASRNELHSLLDKPQLVGIPVLVLGNKRDLPGALD 139
Query: 181 EKELIDRI 188
E LI+R+
Sbjct: 140 ETGLIERM 147
|
Source: Drosophila willistoni Species: Drosophila willistoni Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|45387563|ref|NP_991129.1| ADP-ribosylation factor-like protein 8B-A [Danio rerio] gi|82237378|sp|Q6NZW8.1|AR8BA_DANRE RecName: Full=ADP-ribosylation factor-like protein 8B-A gi|41944557|gb|AAH65942.1| ADP-ribosylation factor-like 8Ba [Danio rerio] | Back alignment and taxonomy information |
|---|
Score = 256 bits (654), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 127/188 (67%), Positives = 141/188 (75%), Gaps = 41/188 (21%)
Query: 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI 60
M L+NR+LDWFKSLFWKEEMELTLVGLQ SGKTTFVNVIASGQFS+DMIPTVGFNMRK+
Sbjct: 1 MLALINRLLDWFKSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV 60
Query: 61 TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGV 120
TKGNVTIK+WDIGGQPRFRSMWERYCRGVNAIV
Sbjct: 61 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIV--------------------------- 93
Query: 121 SGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD 180
YMVDAAD +K+EASRNELH L++KPQL GIP+LVLGNKRDLPNALD
Sbjct: 94 --------------YMVDAADREKVEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALD 139
Query: 181 EKELIDRI 188
EK+LI+++
Sbjct: 140 EKQLIEKM 147
|
Source: Danio rerio Species: Danio rerio Genus: Danio Family: Cyprinidae Order: Cypriniformes Class: Actinopterygii Phylum: Chordata Superkingdom: Eukaryota |
| >gi|432859428|ref|XP_004069103.1| PREDICTED: ADP-ribosylation factor-like protein 8B-like [Oryzias latipes] | Back alignment and taxonomy information |
|---|
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 126/188 (67%), Positives = 141/188 (75%), Gaps = 41/188 (21%)
Query: 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI 60
M L+NR+LDWF++LFWKEEMELTLVGLQ SGKTTFVNVIASGQFS+DMIPTVGFNMRK+
Sbjct: 1 MLALINRLLDWFRALFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV 60
Query: 61 TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGV 120
TKGNVTIK+WDIGGQPRFRSMWERYCRGVNAIV
Sbjct: 61 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIV--------------------------- 93
Query: 121 SGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD 180
YMVDAAD +K+EASRNELH L+EKPQL GIP+LVLGNKRDLPNALD
Sbjct: 94 --------------YMVDAADREKIEASRNELHNLLEKPQLQGIPVLVLGNKRDLPNALD 139
Query: 181 EKELIDRI 188
EK+LI+++
Sbjct: 140 EKQLIEKM 147
|
Source: Oryzias latipes Species: Oryzias latipes Genus: Oryzias Family: Adrianichthyidae Order: Beloniformes Class: Actinopterygii Phylum: Chordata Superkingdom: Eukaryota |
| >gi|348510263|ref|XP_003442665.1| PREDICTED: ADP-ribosylation factor-like protein 8B-like [Oreochromis niloticus] gi|317418952|emb|CBN80990.1| ADP-ribosylation factor-like protein 8B [Dicentrarchus labrax] | Back alignment and taxonomy information |
|---|
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 126/188 (67%), Positives = 141/188 (75%), Gaps = 41/188 (21%)
Query: 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI 60
M L+NR+LDWF+SLFWKEEMELTLVGLQ SGKTTFVNVIASGQFS+DMIPTVGFNMRK+
Sbjct: 1 MLALINRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV 60
Query: 61 TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGV 120
TKGNVTIK+WDIGGQPRFRSMWERYCRGVNAIV
Sbjct: 61 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIV--------------------------- 93
Query: 121 SGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD 180
YMVDAAD +K+EASRNELH L++KPQL GIP+LVLGNKRDLPNALD
Sbjct: 94 --------------YMVDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALD 139
Query: 181 EKELIDRI 188
EK+LI+++
Sbjct: 140 EKQLIEKM 147
|
Source: Oreochromis niloticus Species: Oreochromis niloticus Genus: Oreochromis Family: Cichlidae Order: Perciformes Class: Actinopterygii Phylum: Chordata Superkingdom: Eukaryota |
| >gi|47227344|emb|CAF96893.1| unnamed protein product [Tetraodon nigroviridis] | Back alignment and taxonomy information |
|---|
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 125/188 (66%), Positives = 140/188 (74%), Gaps = 41/188 (21%)
Query: 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI 60
M L+NR+LDWF+SLFWKEEMELTLVGLQ SGKTTFVNVIASG FS+DMIPTVGFNMRK+
Sbjct: 1 MLALINRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGHFSEDMIPTVGFNMRKV 60
Query: 61 TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGV 120
TKGNVTIK+WDIGGQPRFRSMWERYCRGVNAIV
Sbjct: 61 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIV--------------------------- 93
Query: 121 SGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD 180
YMVDAAD +K+EASRNELH L++KPQL GIP+LVLGNKRDLPNALD
Sbjct: 94 --------------YMVDAADKEKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALD 139
Query: 181 EKELIDRI 188
EK+LI+++
Sbjct: 140 EKQLIEKM 147
|
Source: Tetraodon nigroviridis Species: Tetraodon nigroviridis Genus: Tetraodon Family: Tetraodontidae Order: Tetraodontiformes Class: Actinopterygii Phylum: Chordata Superkingdom: Eukaryota |
| >gi|195108875|ref|XP_001999018.1| GI23307 [Drosophila mojavensis] gi|193915612|gb|EDW14479.1| GI23307 [Drosophila mojavensis] | Back alignment and taxonomy information |
|---|
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 129/188 (68%), Positives = 139/188 (73%), Gaps = 41/188 (21%)
Query: 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI 60
M L+NRILDWFKS+FWKEEMELTLVGLQ SGKTTFVNVIASGQF++DMIPTVGFNMRKI
Sbjct: 1 MLALINRILDWFKSIFWKEEMELTLVGLQFSGKTTFVNVIASGQFAEDMIPTVGFNMRKI 60
Query: 61 TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGV 120
TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV
Sbjct: 61 TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV--------------------------- 93
Query: 121 SGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD 180
YMVDAAD DKLEASRNELH+L++KPQL GIP+LVLGNKRDLP ALD
Sbjct: 94 --------------YMVDAADLDKLEASRNELHSLLDKPQLNGIPVLVLGNKRDLPGALD 139
Query: 181 EKELIDRI 188
E LI+R+
Sbjct: 140 ETGLIERM 147
|
Source: Drosophila mojavensis Species: Drosophila mojavensis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195330792|ref|XP_002032087.1| GM23705 [Drosophila sechellia] gi|194121030|gb|EDW43073.1| GM23705 [Drosophila sechellia] | Back alignment and taxonomy information |
|---|
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 127/188 (67%), Positives = 139/188 (73%), Gaps = 41/188 (21%)
Query: 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI 60
M L+NRIL+WFKS+FWKEEMELTLVGLQ SGKTTFVNVIASGQF++DMIPTVGFNMRKI
Sbjct: 1 MLALINRILEWFKSIFWKEEMELTLVGLQFSGKTTFVNVIASGQFAEDMIPTVGFNMRKI 60
Query: 61 TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGV 120
T+GNVTIKVWDIGGQPRFRSMWERYCRGVNAIV
Sbjct: 61 TRGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV--------------------------- 93
Query: 121 SGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD 180
YMVDAAD DKLEASRNELH+L++KPQL GIP+LVLGNKRDLP ALD
Sbjct: 94 --------------YMVDAADLDKLEASRNELHSLLDKPQLAGIPVLVLGNKRDLPGALD 139
Query: 181 EKELIDRI 188
E LI+R+
Sbjct: 140 ETGLIERM 147
|
Source: Drosophila sechellia Species: Drosophila sechellia Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|125774813|ref|XP_001358658.1| GA20665 [Drosophila pseudoobscura pseudoobscura] gi|194746245|ref|XP_001955591.1| GF18845 [Drosophila ananassae] gi|195145356|ref|XP_002013662.1| GL24258 [Drosophila persimilis] gi|54638397|gb|EAL27799.1| GA20665 [Drosophila pseudoobscura pseudoobscura] gi|190628628|gb|EDV44152.1| GF18845 [Drosophila ananassae] gi|194102605|gb|EDW24648.1| GL24258 [Drosophila persimilis] | Back alignment and taxonomy information |
|---|
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 128/188 (68%), Positives = 139/188 (73%), Gaps = 41/188 (21%)
Query: 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI 60
M L+NRILDWFKS+FWKEEMELTLVGLQ SGKTTFVNVIASGQF++DMIPTVGFNMRKI
Sbjct: 1 MLALINRILDWFKSIFWKEEMELTLVGLQFSGKTTFVNVIASGQFAEDMIPTVGFNMRKI 60
Query: 61 TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGV 120
T+GNVTIKVWDIGGQPRFRSMWERYCRGVNAIV
Sbjct: 61 TRGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV--------------------------- 93
Query: 121 SGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD 180
YMVDAAD DKLEASRNELH+L++KPQL GIP+LVLGNKRDLP ALD
Sbjct: 94 --------------YMVDAADLDKLEASRNELHSLLDKPQLAGIPVLVLGNKRDLPGALD 139
Query: 181 EKELIDRI 188
E LI+R+
Sbjct: 140 ETGLIERM 147
|
Source: Drosophila pseudoobscura pseudoobscura Species: Drosophila pseudoobscura Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 329 | ||||||
| ZFIN|ZDB-GENE-030131-9370 | 186 | arl8ba "ADP-ribosylation facto | 0.285 | 0.505 | 0.904 | 1.8e-66 | |
| UNIPROTKB|F2Z4I5 | 186 | ARL8B "ADP-ribosylation factor | 0.285 | 0.505 | 0.882 | 1.3e-65 | |
| UNIPROTKB|E2RE13 | 186 | ARL8B "Uncharacterized protein | 0.285 | 0.505 | 0.882 | 1.3e-65 | |
| UNIPROTKB|Q9NVJ2 | 186 | ARL8B "ADP-ribosylation factor | 0.285 | 0.505 | 0.882 | 1.3e-65 | |
| MGI|MGI:1914416 | 186 | Arl8b "ADP-ribosylation factor | 0.285 | 0.505 | 0.882 | 1.3e-65 | |
| RGD|1562830 | 186 | Arl8b "ADP-ribosylation factor | 0.285 | 0.505 | 0.882 | 1.3e-65 | |
| FB|FBgn0037551 | 186 | Gie "GTPase indispensable for | 0.285 | 0.505 | 0.893 | 1.6e-65 | |
| UNIPROTKB|Q2KI07 | 186 | ARL8B "ADP-ribosylation factor | 0.285 | 0.505 | 0.872 | 3.3e-65 | |
| UNIPROTKB|F1P0Z7 | 186 | ARL8B "Uncharacterized protein | 0.285 | 0.505 | 0.882 | 1.8e-64 | |
| ZFIN|ZDB-GENE-030131-5025 | 187 | arl8a "ADP-ribosylation factor | 0.285 | 0.502 | 0.882 | 3.7e-64 |
| ZFIN|ZDB-GENE-030131-9370 arl8ba "ADP-ribosylation factor-like 8Ba" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 468 (169.8 bits), Expect = 1.8e-66, Sum P(2) = 1.8e-66
Identities = 85/94 (90%), Positives = 91/94 (96%)
Query: 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI 60
M L+NR+LDWFKSLFWKEEMELTLVGLQ SGKTTFVNVIASGQFS+DMIPTVGFNMRK+
Sbjct: 1 MLALINRLLDWFKSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV 60
Query: 61 TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94
TKGNVTIK+WDIGGQPRFRSMWERYCRGVNAIV+
Sbjct: 61 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVY 94
|
|
| UNIPROTKB|F2Z4I5 ARL8B "ADP-ribosylation factor-like protein 8B" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 460 (167.0 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
Identities = 83/94 (88%), Positives = 91/94 (96%)
Query: 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI 60
M L++R+LDWF+SLFWKEEMELTLVGLQ SGKTTFVNVIASGQFS+DMIPTVGFNMRK+
Sbjct: 1 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV 60
Query: 61 TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94
TKGNVTIK+WDIGGQPRFRSMWERYCRGVNAIV+
Sbjct: 61 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVY 94
|
|
| UNIPROTKB|E2RE13 ARL8B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 460 (167.0 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
Identities = 83/94 (88%), Positives = 91/94 (96%)
Query: 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI 60
M L++R+LDWF+SLFWKEEMELTLVGLQ SGKTTFVNVIASGQFS+DMIPTVGFNMRK+
Sbjct: 1 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV 60
Query: 61 TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94
TKGNVTIK+WDIGGQPRFRSMWERYCRGVNAIV+
Sbjct: 61 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVY 94
|
|
| UNIPROTKB|Q9NVJ2 ARL8B "ADP-ribosylation factor-like protein 8B" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 460 (167.0 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
Identities = 83/94 (88%), Positives = 91/94 (96%)
Query: 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI 60
M L++R+LDWF+SLFWKEEMELTLVGLQ SGKTTFVNVIASGQFS+DMIPTVGFNMRK+
Sbjct: 1 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV 60
Query: 61 TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94
TKGNVTIK+WDIGGQPRFRSMWERYCRGVNAIV+
Sbjct: 61 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVY 94
|
|
| MGI|MGI:1914416 Arl8b "ADP-ribosylation factor-like 8B" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 460 (167.0 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
Identities = 83/94 (88%), Positives = 91/94 (96%)
Query: 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI 60
M L++R+LDWF+SLFWKEEMELTLVGLQ SGKTTFVNVIASGQFS+DMIPTVGFNMRK+
Sbjct: 1 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV 60
Query: 61 TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94
TKGNVTIK+WDIGGQPRFRSMWERYCRGVNAIV+
Sbjct: 61 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVY 94
|
|
| RGD|1562830 Arl8b "ADP-ribosylation factor-like 8B" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 460 (167.0 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
Identities = 83/94 (88%), Positives = 91/94 (96%)
Query: 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI 60
M L++R+LDWF+SLFWKEEMELTLVGLQ SGKTTFVNVIASGQFS+DMIPTVGFNMRK+
Sbjct: 1 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV 60
Query: 61 TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94
TKGNVTIK+WDIGGQPRFRSMWERYCRGVNAIV+
Sbjct: 61 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVY 94
|
|
| FB|FBgn0037551 Gie "GTPase indispensable for equal segregation of chromosomes" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 460 (167.0 bits), Expect = 1.6e-65, Sum P(2) = 1.6e-65
Identities = 84/94 (89%), Positives = 91/94 (96%)
Query: 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI 60
M L+NRIL+WFKS+FWKEEMELTLVGLQ SGKTTFVNVIASGQF++DMIPTVGFNMRKI
Sbjct: 1 MLALINRILEWFKSIFWKEEMELTLVGLQFSGKTTFVNVIASGQFAEDMIPTVGFNMRKI 60
Query: 61 TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94
T+GNVTIKVWDIGGQPRFRSMWERYCRGVNAIV+
Sbjct: 61 TRGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVY 94
|
|
| UNIPROTKB|Q2KI07 ARL8B "ADP-ribosylation factor-like protein 8B" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 456 (165.6 bits), Expect = 3.3e-65, Sum P(2) = 3.3e-65
Identities = 82/94 (87%), Positives = 91/94 (96%)
Query: 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI 60
M L++R+LDWF+SLFWKEEMELTLVGLQ SGKTTFVNVIASGQFS+DMIPTVGFNMRK+
Sbjct: 1 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV 60
Query: 61 TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94
TKGNVTIK+WDIGGQPRF+SMWERYCRGVNAIV+
Sbjct: 61 TKGNVTIKIWDIGGQPRFQSMWERYCRGVNAIVY 94
|
|
| UNIPROTKB|F1P0Z7 ARL8B "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 448 (162.8 bits), Expect = 1.8e-64, Sum P(2) = 1.8e-64
Identities = 83/94 (88%), Positives = 90/94 (95%)
Query: 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI 60
M LL+R+LD F+SLFWKEEMELTLVGLQ SGKTTFVNVIASGQFS+DMIPTVGFNMRK+
Sbjct: 1 MLALLSRLLDSFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV 60
Query: 61 TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94
TKGNVTIK+WDIGGQPRFRSMWERYCRGVNAIV+
Sbjct: 61 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVY 94
|
|
| ZFIN|ZDB-GENE-030131-5025 arl8a "ADP-ribosylation factor-like 8A" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 454 (164.9 bits), Expect = 3.7e-64, Sum P(2) = 3.7e-64
Identities = 83/94 (88%), Positives = 90/94 (95%)
Query: 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI 60
M L N++LDWFK+LFWKEEMELTLVGLQ SGKTTFVNVIASGQFS+DMIPTVGFNMRKI
Sbjct: 1 MIALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKI 60
Query: 61 TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94
TKGNVTIK+WDIGGQPRFRSMWERYCRGV+AIV+
Sbjct: 61 TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVY 94
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9VHV5 | ARL8_DROME | No assigned EC number | 0.6755 | 0.4468 | 0.7903 | yes | N/A |
| Q5R6E7 | ARL8B_PONAB | No assigned EC number | 0.6542 | 0.4468 | 0.7903 | yes | N/A |
| Q9NVJ2 | ARL8B_HUMAN | No assigned EC number | 0.6595 | 0.4468 | 0.7903 | yes | N/A |
| Q6NZW8 | AR8BA_DANRE | No assigned EC number | 0.6755 | 0.4468 | 0.7903 | yes | N/A |
| Q9CQW2 | ARL8B_MOUSE | No assigned EC number | 0.6595 | 0.4468 | 0.7903 | yes | N/A |
| Q54R04 | ARL8_DICDI | No assigned EC number | 0.5248 | 0.4255 | 0.7567 | yes | N/A |
| Q66HA6 | ARL8B_RAT | No assigned EC number | 0.6595 | 0.4468 | 0.7903 | yes | N/A |
| Q2KI07 | ARL8B_BOVIN | No assigned EC number | 0.6542 | 0.4468 | 0.7903 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 329 | |||
| cd04159 | 159 | cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl | 1e-75 | |
| cd00878 | 158 | cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf | 1e-41 | |
| pfam00025 | 174 | pfam00025, Arf, ADP-ribosylation factor family | 6e-34 | |
| cd00879 | 191 | cd00879, Sar1, Sar1 is an essential component of C | 8e-30 | |
| cd04149 | 168 | cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | 5e-28 | |
| smart00177 | 175 | smart00177, ARF, ARF-like small GTPases; ARF, ADP- | 4e-25 | |
| PLN00223 | 181 | PLN00223, PLN00223, ADP-ribosylation factor; Provi | 2e-23 | |
| PTZ00133 | 182 | PTZ00133, PTZ00133, ADP-ribosylation factor; Provi | 6e-23 | |
| cd04155 | 174 | cd04155, Arl3, Arf-like 3 (Arl3) GTPase | 2e-22 | |
| cd04157 | 162 | cd04157, Arl6, Arf-like 6 (Arl6) GTPase | 3e-22 | |
| cd04160 | 168 | cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | 3e-22 | |
| cd04152 | 183 | cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) | 4e-22 | |
| cd04151 | 158 | cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | 1e-21 | |
| cd04150 | 159 | cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A | 2e-21 | |
| cd04156 | 160 | cd04156, ARLTS1, Arf-like tumor suppressor gene 1 | 2e-21 | |
| cd04154 | 173 | cd04154, Arl2, Arf-like 2 (Arl2) GTPase | 1e-19 | |
| cd04162 | 164 | cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp | 3e-19 | |
| smart00178 | 184 | smart00178, SAR, Sar1p-like members of the Ras-fam | 4e-18 | |
| COG1100 | 219 | COG1100, COG1100, GTPase SAR1 and related small G | 4e-17 | |
| cd04161 | 167 | cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A | 7e-17 | |
| cd04153 | 174 | cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) | 8e-14 | |
| cd00154 | 159 | cd00154, Rab, Ras-related in brain (Rab) family of | 3e-12 | |
| cd04158 | 169 | cd04158, ARD1, (ADP-ribosylation factor domain pro | 1e-11 | |
| smart00175 | 164 | smart00175, RAB, Rab subfamily of small GTPases | 6e-10 | |
| pfam00071 | 162 | pfam00071, Ras, Ras family | 6e-10 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 1e-09 | |
| cd01863 | 161 | cd01863, Rab18, Rab GTPase family 18 (Rab18) | 3e-08 | |
| cd01860 | 163 | cd01860, Rab5_related, Rab-related GTPase family i | 5e-08 | |
| cd01864 | 165 | cd01864, Rab19, Rab GTPase family 19 (Rab19) | 4e-07 | |
| cd04114 | 169 | cd04114, Rab30, Rab GTPase family 30 (Rab30) | 5e-07 | |
| cd01868 | 165 | cd01868, Rab11_like, Rab GTPase family 11 (Rab11)- | 5e-07 | |
| cd01867 | 167 | cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie | 5e-07 | |
| PTZ00132 | 215 | PTZ00132, PTZ00132, GTP-binding nuclear protein Ra | 5e-07 | |
| cd04113 | 161 | cd04113, Rab4, Rab GTPase family 4 (Rab4) | 1e-06 | |
| cd00877 | 166 | cd00877, Ran, Ras-related nuclear proteins (Ran)/T | 2e-06 | |
| cd04128 | 182 | cd04128, Spg1, Septum-promoting GTPase (Spg1) | 3e-06 | |
| cd04115 | 170 | cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu | 4e-06 | |
| COG2229 | 187 | COG2229, COG2229, Predicted GTPase [General functi | 4e-06 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 4e-06 | |
| cd04123 | 162 | cd04123, Rab21, Rab GTPase family 21 (Rab21) | 5e-06 | |
| cd01861 | 161 | cd01861, Rab6, Rab GTPase family 6 (Rab6) | 6e-06 | |
| PLN03118 | 211 | PLN03118, PLN03118, Rab family protein; Provisiona | 8e-06 | |
| cd04109 | 213 | cd04109, Rab28, Rab GTPase family 28 (Rab28) | 9e-06 | |
| cd01869 | 166 | cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t | 1e-05 | |
| PLN03071 | 219 | PLN03071, PLN03071, GTP-binding nuclear protein Ra | 2e-05 | |
| cd04108 | 170 | cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3 | 2e-05 | |
| cd01865 | 165 | cd01865, Rab3, Rab GTPase family 3 contains Rab3A, | 3e-05 | |
| cd04110 | 199 | cd04110, Rab35, Rab GTPase family 35 (Rab35) | 3e-05 | |
| cd04107 | 201 | cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1 | 7e-05 | |
| smart00176 | 200 | smart00176, RAN, Ran (Ras-related nuclear proteins | 2e-04 | |
| cd04126 | 220 | cd04126, Rab20, Rab GTPase family 20 (Rab20) | 2e-04 | |
| cd04105 | 202 | cd04105, SR_beta, Signal recognition particle rece | 3e-04 | |
| cd09914 | 161 | cd09914, RocCOR, Ras of complex proteins (Roc) C-t | 7e-04 | |
| cd04112 | 191 | cd04112, Rab26, Rab GTPase family 26 (Rab26) | 0.001 | |
| cd04111 | 211 | cd04111, Rab39, Rab GTPase family 39 (Rab39) | 0.001 | |
| cd04117 | 164 | cd04117, Rab15, Rab GTPase family 15 (Rab15) | 0.002 | |
| pfam08477 | 116 | pfam08477, Miro, Miro-like protein | 0.002 |
| >gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases | Back alignment and domain information |
|---|
Score = 229 bits (585), Expect = 1e-75
Identities = 100/166 (60%), Positives = 112/166 (67%), Gaps = 41/166 (24%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSM 81
E+TLVGLQ SGKTT VNVIASGQFS+D IPTVGFNMRK+TKGNVTIKVWD+GGQPRFRSM
Sbjct: 1 EITLVGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRKVTKGNVTIKVWDLGGQPRFRSM 60
Query: 82 WERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAAD 141
WERYCRGVNAIV Y+VDAAD
Sbjct: 61 WERYCRGVNAIV-----------------------------------------YVVDAAD 79
Query: 142 TDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDR 187
+KLE ++NELH L+EKP L GIP+LVLGNK DLP AL ELI++
Sbjct: 80 REKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQ 125
|
Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159 |
| >gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases | Back alignment and domain information |
|---|
Score = 141 bits (359), Expect = 1e-41
Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 42/164 (25%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMW 82
+ ++GL +GKTT + + G+ IPT+GFN+ + NV VWD+GGQ + R +W
Sbjct: 2 ILMLGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVETVEYKNVKFTVWDVGGQDKIRPLW 60
Query: 83 ERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT 142
+ Y + +++ +VD++D
Sbjct: 61 KHYYENTDGLIF-----------------------------------------VVDSSDR 79
Query: 143 DKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELID 186
+++E ++NELH L+ + +L G P+L+L NK+DLP AL E ELI+
Sbjct: 80 ERIEEAKNELHKLLNEEELKGAPLLILANKQDLPGALTESELIE 123
|
Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158 |
| >gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 6e-34
Identities = 55/178 (30%), Positives = 86/178 (48%), Gaps = 43/178 (24%)
Query: 8 ILDWFKSLF-WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVT 66
L LF W +EM + ++GL +GKTT + + G+ IPT+GFN+ +T NV
Sbjct: 1 FLSILAKLFGWNKEMRILILGLDNAGKTTILYKLKLGEIVT-TIPTIGFNVETVTYKNVK 59
Query: 67 IKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWL 126
VWD+GGQ R +W Y +A+++
Sbjct: 60 FTVWDVGGQESLRPLWRNYFPNTDAVIF-------------------------------- 87
Query: 127 SLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKEL 184
+VD+AD D++E ++ ELHAL+ + +L P+L+L NK+DLP A+ E E+
Sbjct: 88 ---------VVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLPGAMSEAEI 136
|
Pfam combines a number of different Prosite families together. Length = 174 |
| >gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 8e-30
Identities = 52/193 (26%), Positives = 92/193 (47%), Gaps = 47/193 (24%)
Query: 8 ILDWFKSLF-----WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITK 62
I DWF ++ +K+E ++ +GL +GKTT ++++ + +Q +PT+ ++T
Sbjct: 2 IFDWFYNVLSSLGLYKKEAKIVFLGLDNAGKTTLLHMLKDDRLAQ-HVPTLHPTSEELTI 60
Query: 63 GNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSG 122
GNV +D+GG + R +W+ Y V+ IV
Sbjct: 61 GNVKFTTFDLGGHEQARRVWKDYFPEVDGIV----------------------------- 91
Query: 123 PMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEK 182
++VDAAD ++ + S+ EL +L+ +L +PIL+LGNK D P A+ E+
Sbjct: 92 ------------FLVDAADPERFQESKEELDSLLNDEELANVPILILGNKIDKPGAVSEE 139
Query: 183 ELIDRIMIDFWIT 195
EL + + + T
Sbjct: 140 ELREALGLYGTTT 152
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191 |
| >gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 5e-28
Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 42/180 (23%)
Query: 12 FKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWD 71
LF +EM + ++GL +GKTT + + GQ S IPTVGFN+ +T NV VWD
Sbjct: 1 LSKLFGNKEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNVKFNVWD 59
Query: 72 IGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQ 131
+GGQ + R +W Y G ++
Sbjct: 60 VGGQDKIRPLWRHYYTGTQGLI-------------------------------------- 81
Query: 132 LIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRIMID 191
++VD+AD D+++ +R ELH +I ++ +LV NK+DLP+A+ E+ +++ +
Sbjct: 82 ---FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLT 138
|
Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168 |
| >gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Score = 99.2 bits (247), Expect = 4e-25
Identities = 50/177 (28%), Positives = 85/177 (48%), Gaps = 42/177 (23%)
Query: 12 FKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWD 71
F LF +EM + +VGL +GKTT + + G+ S IPT+GFN+ +T N++ VWD
Sbjct: 5 FSKLFGNKEMRILMVGLDAAGKTTILYKLKLGE-SVTTIPTIGFNVETVTYKNISFTVWD 63
Query: 72 IGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQ 131
+GGQ + R +W Y ++
Sbjct: 64 VGGQDKIRPLWRHYYTNTQGLI-------------------------------------- 85
Query: 132 LIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRI 188
++VD+ D D+++ +R ELH ++ + +L ILV NK+DLP+A+ E+ +++
Sbjct: 86 ---FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKL 139
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175 |
| >gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 95.0 bits (236), Expect = 2e-23
Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 42/177 (23%)
Query: 12 FKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWD 71
F LF K+EM + +VGL +GKTT + + G+ IPT+GFN+ + N++ VWD
Sbjct: 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWD 67
Query: 72 IGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQ 131
+GGQ + R +W Y + ++
Sbjct: 68 VGGQDKIRPLWRHYFQNTQGLI-------------------------------------- 89
Query: 132 LIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRI 188
++VD+ D D++ +R+ELH ++ + +L +LV NK+DLPNA++ E+ D++
Sbjct: 90 ---FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKL 143
|
Length = 181 |
| >gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 93.4 bits (232), Expect = 6e-23
Identities = 48/177 (27%), Positives = 85/177 (48%), Gaps = 42/177 (23%)
Query: 12 FKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWD 71
FKSLF K+E+ + +VGL +GKTT + + G+ IPT+GFN+ + N+ +WD
Sbjct: 9 FKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVETVEYKNLKFTMWD 67
Query: 72 IGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQ 131
+GGQ + R +W Y + N ++
Sbjct: 68 VGGQDKLRPLWRHYYQNTNGLI-------------------------------------- 89
Query: 132 LIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRI 188
++VD+ D +++ +R EL ++ + +L +LV NK+DLPNA+ E+ +++
Sbjct: 90 ---FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKL 143
|
Length = 182 |
| >gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 2e-22
Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 44/181 (24%)
Query: 8 ILDWFKSL--FWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNV 65
+L + L ++E+ + L+GL +GKTT + +AS S + PT GFN++ +
Sbjct: 1 LLSILRKLKPSSRQEVRILLLGLDNAGKTTILKQLASEDISH-ITPTQGFNIKNVQADGF 59
Query: 66 TIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMW 125
+ VWDIGGQ + R W Y+E D
Sbjct: 60 KLNVWDIGGQRKIRPYWRN---------------------------YFENTD-------- 84
Query: 126 LSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELI 185
++ Y++D+AD + E + EL L+E+ +L G+P+LV NK+DL A +E+
Sbjct: 85 ------VLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFANKQDLLTAAPAEEVA 138
Query: 186 D 186
+
Sbjct: 139 E 139
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174 |
| >gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 3e-22
Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 44/164 (26%)
Query: 26 VGLQCSGKTTFVNVIA-SGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWER 84
+GL SGKTT +N + S SQ+++PTVGFN+ KGN++ +D+ GQ ++R +WE
Sbjct: 5 LGLDNSGKTTIINQLKPSNAQSQNIVPTVGFNVESFKKGNLSFTAFDMSGQGKYRGLWEH 64
Query: 85 YCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDK 144
Y + + I+ +++D++D +
Sbjct: 65 YYKNIQGII-----------------------------------------FVIDSSDRLR 83
Query: 145 LEASRNELHALIEKPQLI--GIPILVLGNKRDLPNALDEKELID 186
+ +++EL L+ P + IPIL NK DLP+AL ++
Sbjct: 84 MVVAKDELELLLNHPDIKHRRIPILFYANKMDLPDALTAVKITQ 127
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162 |
| >gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 3e-22
Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 50/168 (29%)
Query: 25 LVGLQCSGKTTFVNVIASGQFSQD--------MIPTVGFNMRKITKGNVTIKVWDIGGQP 76
++GL +GKTTF+ + +FS++ + PTVG N+ I G + WD+GGQ
Sbjct: 4 ILGLDNAGKTTFLEQTKT-KFSKNYKGLNPSKITPTVGLNIGTIEVGKARLMFWDLGGQE 62
Query: 77 RFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYM 136
RS+W++Y + ++ Y+
Sbjct: 63 ELRSLWDKYYAESHGVI-----------------------------------------YV 81
Query: 137 VDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKEL 184
+D+ D ++ S++ +I L G+P+LVL NK+DLP+AL E+
Sbjct: 82 IDSTDRERFNESKSAFEKVINNEALEGVPLLVLANKQDLPDALSVAEI 129
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168 |
| >gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 4e-22
Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 47/169 (27%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI--TKGN---VTIKVWDIGGQ 75
+ + ++GL +GKTT + + +F + +PT GFN KI + GN VT WD+GGQ
Sbjct: 4 LHIVMLGLDSAGKTTVLYRLKFNEFV-NTVPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQ 62
Query: 76 PRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKY 135
+ R +W+ Y R + IV +
Sbjct: 63 EKLRPLWKSYTRCTDGIV-----------------------------------------F 81
Query: 136 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKEL 184
+VD+ D +++E ++ ELH + + + G+P+LVL NK+DLPNAL E+
Sbjct: 82 VVDSVDVERMEEAKTELHKITKFSENQGVPVLVLANKQDLPNALPVSEV 130
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183 |
| >gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 1e-21
Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 42/164 (25%)
Query: 25 LVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWER 84
++GL +GKTT + + G+ IPT+GFN+ +T N+ +VWD+GGQ R W
Sbjct: 4 ILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRC 62
Query: 85 YCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDK 144
Y +AI+ Y+VD+ D D+
Sbjct: 63 YYSNTDAII-----------------------------------------YVVDSTDRDR 81
Query: 145 LEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRI 188
L S++ELHA++E+ +L +LV NK+D+P AL E E+ +++
Sbjct: 82 LGISKSELHAMLEEEELKDAVLLVFANKQDMPGALSEAEVAEKL 125
|
Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158 |
| >gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5) | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 2e-21
Identities = 43/168 (25%), Positives = 77/168 (45%), Gaps = 42/168 (25%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS 80
M + +VGL +GKTT + + G+ IPT+GFN+ + N++ VWD+GGQ + R
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRP 59
Query: 81 MWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAA 140
+W Y + ++ ++VD+
Sbjct: 60 LWRHYFQNTQGLI-----------------------------------------FVVDSN 78
Query: 141 DTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRI 188
D +++ +R EL ++ + +L +LV NK+DLPNA+ E+ D++
Sbjct: 79 DRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKL 126
|
The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159 |
| >gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11) | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 2e-21
Identities = 43/168 (25%), Positives = 81/168 (48%), Gaps = 43/168 (25%)
Query: 25 LVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI-TKGNVTIKVWDIGGQPRFRSMWE 83
L+GL +GK+T + + + IPTVGFN+ + + ++++ VWD+GGQ + R++W+
Sbjct: 4 LLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWK 62
Query: 84 RYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD 143
Y + +V Y+VD++D
Sbjct: 63 CYLENTDGLV-----------------------------------------YVVDSSDEA 81
Query: 144 KLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRIMID 191
+L+ S+ EL +++ + G+P+++L NK+DLP AL +E+ R +
Sbjct: 82 RLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLK 129
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160 |
| >gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 1e-19
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR 79
EM + ++GL +GKTT + +G+ + PT+GFN++ + + +WD+GGQ R
Sbjct: 14 EMRILMLGLDNAGKTTILKKF-NGEDISTISPTLGFNIKTLEYNGYKLNIWDVGGQKSLR 72
Query: 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDA 139
S W Y +A++W +VD+
Sbjct: 73 SYWRNYFESTDALIW-----------------------------------------VVDS 91
Query: 140 ADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKEL 184
+D +LE + EL L+ + +L G +L+ NK+DLP AL +E+
Sbjct: 92 SDRARLEDCKRELQKLLVEERLAGATLLIFANKQDLPGALSPEEI 136
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173 |
| >gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 3e-19
Identities = 41/163 (25%), Positives = 78/163 (47%), Gaps = 43/163 (26%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSM 81
++ ++GL +GKT+ ++ ++S + + ++PT GFN I + +++ +IGG R
Sbjct: 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKY 60
Query: 82 WERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAAD 141
W+RY G ++ ++VD+AD
Sbjct: 61 WKRYLSGSQGLI-----------------------------------------FVVDSAD 79
Query: 142 TDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKEL 184
+++L +R ELH L++ P +P++VL NK+DLP A +E+
Sbjct: 80 SERLPLARQELHQLLQHPP--DLPLVVLANKQDLPAARSVQEI 120
|
Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164 |
| >gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Score = 80.4 bits (198), Expect = 4e-18
Identities = 48/181 (26%), Positives = 77/181 (42%), Gaps = 47/181 (25%)
Query: 9 LDWFKSLF-----WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKG 63
DWF + W + ++ +GL +GKTT ++++ + + +Q PT ++ G
Sbjct: 1 FDWFYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTSEELAIG 59
Query: 64 NVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGP 123
N+ +D+GG + R +W+ Y VN IV
Sbjct: 60 NIKFTTFDLGGHQQARRLWKDYFPEVNGIV------------------------------ 89
Query: 124 MWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKE 183
Y+VDA D ++ S+ EL AL+ +L +P L+LGNK D P A E E
Sbjct: 90 -----------YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDE 138
Query: 184 L 184
L
Sbjct: 139 L 139
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184 |
| >gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.5 bits (193), Expect = 4e-17
Identities = 40/178 (22%), Positives = 68/178 (38%), Gaps = 45/178 (25%)
Query: 16 FWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKIT----KGNVTIKVWD 71
+ +E ++ ++G GKTT +N + +F + PT+G T + N+ +++WD
Sbjct: 1 LFMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWD 60
Query: 72 IGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQ 131
GQ +RS+ Y RG N I L + ++ S+
Sbjct: 61 TAGQEEYRSLRPEYYRGANGI-----LIVYDSTLRESS---------------------- 93
Query: 132 LIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRIM 189
E + L L E +PIL++GNK DL + E I +
Sbjct: 94 -------------DELTEEWLEELRELA-PDDVPILLVGNKIDLFDEQSSSEEILNQL 137
|
Length = 219 |
| >gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13 | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 7e-17
Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 48/167 (28%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMW 82
L VGL +GKTT V+ + G+ + + PTVGF K+ + ++D+GG FR +W
Sbjct: 2 LLTVGLDNAGKTTLVSAL-QGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIW 60
Query: 83 ERY---CRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDA 139
Y G + ++VD+
Sbjct: 61 VNYYAEAHG--------------------------------------------LVFVVDS 76
Query: 140 ADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELID 186
+D D+++ + L L++ P++ G PILVL NK+D NAL ++I+
Sbjct: 77 SDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIE 123
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167 |
| >gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 8e-14
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 43/176 (24%)
Query: 12 FKSLFW-KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVW 70
SLF+ ++E ++ +VGL +GKTT + G+ PT+G N+ +I N+ +W
Sbjct: 6 LWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTS-PTIGSNVEEIVYKNIRFLMW 64
Query: 71 DIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLF 130
DIGGQ RS W Y +A++
Sbjct: 65 DIGGQESLRSSWNTYYTNTDAVI------------------------------------- 87
Query: 131 QLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELID 186
++D+ D ++L ++ EL+ ++ L +LVL NK+DL A+ E+ +
Sbjct: 88 ----LVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISE 139
|
Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174 |
| >gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 63.2 bits (155), Expect = 3e-12
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 25 LVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRS 80
L+G GKT+ + +FS++ T+G F + I +K +WD GQ RFRS
Sbjct: 5 LIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQERFRS 64
Query: 81 MWERYCRGVNAIV 93
+ Y RG + +
Sbjct: 65 ITSSYYRGAHGAI 77
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159 |
| >gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1) | Back alignment and domain information |
|---|
Score = 62.0 bits (150), Expect = 1e-11
Identities = 37/161 (22%), Positives = 72/161 (44%), Gaps = 42/161 (26%)
Query: 26 VGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERY 85
+GL +GKTT + + +F Q IPT+GFN+ + N+ +WD+GG+ + R +W+ Y
Sbjct: 5 LGLDGAGKTTILFKLKQDEFMQP-IPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHY 63
Query: 86 CRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKL 145
A+V +++D++ D++
Sbjct: 64 YLNTQAVV-----------------------------------------FVIDSSHRDRV 82
Query: 146 EASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELID 186
+ +EL L+ + +L +L+ NK+D+ AL +E+ +
Sbjct: 83 SEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTE 123
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169 |
| >gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 6e-10
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 25 LVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRS 80
L+G GK++ ++ G+FS+ T+G F + I +K +WD GQ RFRS
Sbjct: 5 LIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRS 64
Query: 81 MWERYCRGVNAIV 93
+ Y RG +
Sbjct: 65 ITSSYYRGAVGAL 77
|
Rab GTPases are implicated in vesicle trafficking. Length = 164 |
| >gnl|CDD|215692 pfam00071, Ras, Ras family | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 6e-10
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
L LVG GK++ + +F ++ IPT+G F + I T+K +WD GQ RF
Sbjct: 2 LVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQERF 61
Query: 79 RSMWERYCRGVNAIV 93
R++ Y RG +
Sbjct: 62 RALRPLYYRGAQGFL 76
|
Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 1e-09
Identities = 35/170 (20%), Positives = 59/170 (34%), Gaps = 44/170 (25%)
Query: 25 LVGLQCSGKTTFVNVIASGQF---SQDMIPTVGFNMRKIT--KGNVTIKVWDIGGQPRFR 79
+VG GK++ +N + G+ S T ++ KG V + + D G F
Sbjct: 2 VVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEFG 61
Query: 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDA 139
+ A L DL I +VD+
Sbjct: 62 GLGRE----------------------ELARLLLRGADL--------------ILLVVDS 85
Query: 140 ADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRIM 189
D + E ++ + + K GIPI+++GNK DL + +EL+
Sbjct: 86 TDRESEEDAKLLILRRLRKE---GIPIILVGNKIDLLEEREVEELLRLEE 132
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18) | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 3e-08
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIKV--WDIGGQPRF 78
+ L+G GK++ + F +D+ T+G F ++ +T +K+ WD GQ RF
Sbjct: 3 ILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQERF 62
Query: 79 RSMWERYCRGVNAIV 93
R++ Y RG ++
Sbjct: 63 RTLTSSYYRGAQGVI 77
|
Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 5e-08
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
L L+G GK++ V +FS++ T+G F + + + T+K +WD GQ R+
Sbjct: 4 LVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERY 63
Query: 79 RSMWERYCRGVN-AIV 93
RS+ Y RG AIV
Sbjct: 64 RSLAPMYYRGAAAAIV 79
|
The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19) | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 4e-07
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMR--KITKGNVTIKVWDIGGQPR 77
++ L+G GKT V SG FS+ T+G F M+ +I V +++WD GQ R
Sbjct: 5 KIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 64
Query: 78 FRSMWERYCRGVNAIV 93
FR++ + Y R N +
Sbjct: 65 FRTITQSYYRSANGAI 80
|
Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30) | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 5e-07
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 12 FKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK- 68
+ LF ++ L+G GKT V G F T+G F ++ + IK
Sbjct: 4 YDFLF-----KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKL 58
Query: 69 -VWDIGGQPRFRSMWERYCRGVNAIVWT 95
+WD GQ RFRS+ + Y R NA++ T
Sbjct: 59 QIWDTAGQERFRSITQSYYRSANALILT 86
|
Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169 |
| >gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25 | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 5e-07
Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 48/149 (32%)
Query: 32 GKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSMWERYCR 87
GK+ ++ +F+ D T+G F R I TIK +WD GQ R+R++ Y R
Sbjct: 15 GKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAGQERYRAITSAYYR 74
Query: 88 G-VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLE 146
G V A++ +Y ++K +E V+ WL L D AD++
Sbjct: 75 GAVGALL----VYDITKKST------FENVER------WLKEL-------RDHADSN--- 108
Query: 147 ASRNELHALIEKPQLIGIPILVLGNKRDL 175
I I+++GNK DL
Sbjct: 109 -----------------IVIMLVGNKSDL 120
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13) | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 5e-07
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQP 76
+L L+G GK+ + + F+ I T+G F +R I IK +WD GQ
Sbjct: 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63
Query: 77 RFRSMWERYCRGVNAIV 93
RFR++ Y RG I+
Sbjct: 64 RFRTITTSYYRGAMGII 80
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167 |
| >gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 5e-07
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGG 74
E +L LVG GKTTFV +G+F + IPT+G + + G + VWD G
Sbjct: 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAG 67
Query: 75 QPRF 78
Q +F
Sbjct: 68 QEKF 71
|
Length = 215 |
| >gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4) | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-06
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 25 LVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRS 80
++G +GK+ ++ +F QD T+G F R + G ++K +WD GQ RFRS
Sbjct: 5 IIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQERFRS 64
Query: 81 MWERYCRG 88
+ Y RG
Sbjct: 65 VTRSYYRG 72
|
Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-06
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQPRF 78
L LVG +GKTTFV +G+F + + T+G + + +G + VWD GQ +F
Sbjct: 3 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKF 62
Query: 79 RSMWERY 85
+ + Y
Sbjct: 63 GGLRDGY 69
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166 |
| >gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1) | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-06
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 25 LVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNM--RKITKGNVTI--KVWDIGGQPRFRS 80
L+G GKT+ + G+F ++ I T+G N + I+ I +WD+GGQ F +
Sbjct: 5 LLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFIN 64
Query: 81 MWERYCRGVNAIVW 94
M C+ AI++
Sbjct: 65 MLPLVCKDAVAILF 78
|
Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182 |
| >gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 4e-06
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 32 GKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFR-SMWERYC 86
GKT +G+F + T+G + R+ I + +++WD GQ RFR SM + Y
Sbjct: 14 GKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYY 73
Query: 87 RGVNAIVWT 95
R V+A+V+
Sbjct: 74 RNVHAVVFV 82
|
Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170 |
| >gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 4e-06
Identities = 37/178 (20%), Positives = 55/178 (30%), Gaps = 68/178 (38%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTV--------GFNMRKITK----GNVTI 67
E ++ ++G +GKTTFV S + G R T G++ +
Sbjct: 10 ETKIVVIGPVGAGKTTFV-----RALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL 64
Query: 68 ----KVWDIG--GQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVS 121
V G GQ RF+ MWE RG +
Sbjct: 65 DEDTGVHLFGTPGQERFKFMWEILSRGAVGAI---------------------------- 96
Query: 122 GPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL 179
+VD++ A P IP++V NK+DL +AL
Sbjct: 97 -------------VLVDSSRPITFHAEEIIDFLTSRNP----IPVVVAINKQDLFDAL 137
|
Length = 187 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 4e-06
Identities = 37/170 (21%), Positives = 61/170 (35%), Gaps = 46/170 (27%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQD-MIPTVGFN--MRKITKGNVTIKV--WDIGG 74
E+++ +VG GK+T +N + + S P N I + T K D G
Sbjct: 1 EIKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAG 60
Query: 75 QPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIK 134
Q + ++ Y R V + L V F ++
Sbjct: 61 QEDYDAIRRLYYRAVESS-------------------------LRV---------FDIVI 86
Query: 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-LDEKE 183
++D + LE E+ E G+PI+++GNK DL +A L
Sbjct: 87 LVLDVEEI--LEKQTKEIIHHAES----GVPIILVGNKIDLRDAKLKTHV 130
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21) | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 5e-06
Identities = 32/159 (20%), Positives = 54/159 (33%), Gaps = 50/159 (31%)
Query: 25 LVGLQCSGKTTFVNVIASGQFSQDMIPTV--GFNMRKIT--KGNVTIKVWDIGGQPRFRS 80
L+G GKT+ V +F++ T F + + + + +WD GQ R+ +
Sbjct: 5 LLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHA 64
Query: 81 MWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAA 140
+ Y R + AIL Y D
Sbjct: 65 LGPIYYRDADG-----------------AILVY------------------------DIT 83
Query: 141 DTDKLEASRNELHALIEKPQLIG--IPILVLGNKRDLPN 177
D D + + + L Q+ G I ++++GNK DL
Sbjct: 84 DADSFQKVKKWIKELK---QMRGNNISLVIVGNKIDLER 119
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6) | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 6e-06
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
L +G Q GKT+ + F T+G F + + + T++ +WD GQ RF
Sbjct: 3 LVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQERF 62
Query: 79 RSMWERYCRGVNAIV 93
RS+ Y R + V
Sbjct: 63 RSLIPSYIRDSSVAV 77
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 8e-06
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 22 ELTLVGLQCSGKTTF-VNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQP 76
++ L+G GK++ V+ I+S +D+ PT+G F ++++T G +K +WD GQ
Sbjct: 16 KILLIGDSGVGKSSLLVSFISSS--VEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQE 73
Query: 77 RFRSMWERYCRGVNAIV 93
RFR++ Y R I+
Sbjct: 74 RFRTLTSSYYRNAQGII 90
|
Length = 211 |
| >gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28) | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 9e-06
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 25 LVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKIT---KGNVTIKVWDIGGQPRFR 79
++G SGKT+ + A F + T+G F R+IT NVT++VWDIGGQ
Sbjct: 5 VLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQQIGG 64
Query: 80 SMWERYCRGVNAI 92
M ++Y G A+
Sbjct: 65 KMLDKYIYGAQAV 77
|
Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213 |
| >gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1 | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
L L+G GK+ + A +++ I T+G F +R I T+K +WD GQ RF
Sbjct: 5 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERF 64
Query: 79 RSMWERYCRGVNAIV 93
R++ Y RG + I+
Sbjct: 65 RTITSSYYRGAHGII 79
|
Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-05
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQPRF 78
L +VG +GKTTFV +G+F + PT+G + + G + WD GQ +F
Sbjct: 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75
|
Length = 219 |
| >gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36) | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-05
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 26 VGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNV--TIKVWDIGGQPRFRSM 81
VG GKT +N F ++ T+G F M + V ++++WD GQ RF+ +
Sbjct: 6 VGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQERFKCI 65
Query: 82 WERYCRGVNAIV 93
Y RG AI+
Sbjct: 66 ASTYYRGAQAII 77
|
Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170 |
| >gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 3e-05
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGN--VTIKVWDIGGQPR 77
+L ++G GKT+F+ A F+ + TVG F ++ + + + + +++WD GQ R
Sbjct: 3 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQER 62
Query: 78 FRSMWERYCRG 88
+R++ Y RG
Sbjct: 63 YRTITTAYYRG 73
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35) | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-05
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMR--KITKGNVTIKVWDIGGQPR 77
+L ++G GK++ + A FS I T+G F +R +I V +++WD GQ R
Sbjct: 8 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER 67
Query: 78 FRSMWERYCRGVNAIV 93
FR++ Y RG + ++
Sbjct: 68 FRTITSTYYRGTHGVI 83
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199 |
| >gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32) | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 7e-05
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 31 SGKTTFVNVIASGQFSQDMIPTVG--FNMRKIT---KGNVTIKVWDIGGQPRFRSMWERY 85
GKT+ + G FSQ T+G F ++ I V +++WDI GQ RF M Y
Sbjct: 11 VGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVY 70
Query: 86 CRG-VNAIV 93
+G V AI+
Sbjct: 71 YKGAVGAII 79
|
Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201 |
| >gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 2e-04
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 26 VGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQPRFRSM 81
VG +GKTTFV +G+F + + T+G + + +G + VWD GQ +F +
Sbjct: 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60
Query: 82 WERY 85
+ Y
Sbjct: 61 RDGY 64
|
Ran is involved in the active transport of proteins through nuclear pores. Length = 200 |
| >gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20) | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 2e-04
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 32 GKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGV 89
GKT+ ++ +F +D + TVG F +++ G I +WD G+ +F + YCRG
Sbjct: 12 GKTSLLHRYMERRF-KDTVSTVGGAFYLKQW--GPYNISIWDTAGREQFHGLGSMYCRGA 68
Query: 90 NAIVWTGGLYIVS 102
A++ T + V
Sbjct: 69 AAVILTYDVSNVQ 81
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220 |
| >gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP) | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 3e-04
Identities = 37/180 (20%), Positives = 60/180 (33%), Gaps = 58/180 (32%)
Query: 25 LVGLQCSGKTTFVNVIASGQFSQ---DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSM 81
L+G SGKT + +G+ + P V +KG + + D+ G + R
Sbjct: 5 LLGPSDSGKTALFTKLTTGKVRSTVTSIEPNVASFYSNSSKGKK-LTLVDVPGHEKLRDK 63
Query: 82 -WERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAA 140
E + AIV ++VD+A
Sbjct: 64 LLEYLKASLKAIV-----------------------------------------FVVDSA 82
Query: 141 DTDK-LEASRNELHALIEKPQLI--GIPILVLGNKRDLPNALD--------EKELIDRIM 189
K + L+ ++ + I IPIL+ NK+DL A EKE I+ +
Sbjct: 83 TFQKNIRDVAEFLYDILTDLEKIKNKIPILIACNKQDLFTAKPAKKIKELLEKE-INTLR 141
|
Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202 |
| >gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 7e-04
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGN-----VTIKVWDIGG 74
E +L LVG GKT+ + +F D T G N++ + + VWD GG
Sbjct: 1 EAKLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGG 60
Query: 75 QPRFRS 80
Q + +
Sbjct: 61 QEIYHA 66
|
RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161 |
| >gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26) | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.001
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 25 LVGLQCSGKTTFVNVIASGQF-SQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFR 79
LVG GKT + G F + I TVG F + +T V +K +WD GQ RFR
Sbjct: 5 LVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQERFR 64
Query: 80 SMWERYCRGVNAIV 93
S+ Y R +A++
Sbjct: 65 SVTHAYYRDAHALL 78
|
Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191 |
| >gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39) | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.001
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKI-TKGNVTIK--VWDIGGQPR 77
L ++G GK++ + G+F++ PTVG F R I + V IK +WD GQ R
Sbjct: 5 LIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER 64
Query: 78 FRSMWERYCR 87
FRS+ Y R
Sbjct: 65 FRSITRSYYR 74
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211 |
| >gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15) | Back alignment and domain information |
|---|
Score = 38.4 bits (89), Expect = 0.002
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKG--NVTIKVWDIGGQPRF 78
L L+G GKT + +F I T+G F M+ I V I++WD GQ R+
Sbjct: 3 LLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERY 62
Query: 79 RSMWERYCRGVNAI 92
+++ ++Y R I
Sbjct: 63 QTITKQYYRRAQGI 76
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|219856 pfam08477, Miro, Miro-like protein | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.002
Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 25 LVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITK--GNVTIK--VWDIGGQPRFRS 80
++G + SGK++ ++ + G+F + + G + T T +WD GG+ +
Sbjct: 4 VIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREELKF 63
Query: 81 MWERYCRGVNAIV 93
+ + +AI+
Sbjct: 64 EHIIFMKWADAIL 76
|
Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 329 | |||
| KOG0084|consensus | 205 | 99.98 | ||
| KOG0092|consensus | 200 | 99.96 | ||
| KOG0078|consensus | 207 | 99.96 | ||
| KOG0094|consensus | 221 | 99.96 | ||
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 99.96 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 99.96 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 99.95 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 99.95 | |
| KOG0080|consensus | 209 | 99.95 | ||
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 99.95 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.95 | |
| KOG0098|consensus | 216 | 99.95 | ||
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 99.95 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 99.95 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.95 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 99.95 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 99.95 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.95 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.95 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 99.95 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.95 | |
| KOG0394|consensus | 210 | 99.95 | ||
| KOG0075|consensus | 186 | 99.95 | ||
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 99.95 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 99.95 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.95 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.94 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.94 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.94 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 99.94 | |
| KOG0079|consensus | 198 | 99.94 | ||
| KOG0087|consensus | 222 | 99.94 | ||
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.94 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.94 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.94 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.94 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.94 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 99.94 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.94 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 99.94 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.94 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.94 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.94 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.94 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.94 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.94 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.94 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.94 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.94 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.94 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.94 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.94 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.93 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.93 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.93 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.93 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.93 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.93 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.93 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.93 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.93 | |
| KOG0081|consensus | 219 | 99.93 | ||
| KOG0093|consensus | 193 | 99.93 | ||
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.93 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.93 | |
| KOG0095|consensus | 213 | 99.93 | ||
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.93 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.93 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.93 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.93 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.93 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.93 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.93 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.93 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.93 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.93 | |
| KOG0086|consensus | 214 | 99.92 | ||
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.92 | |
| KOG0091|consensus | 213 | 99.92 | ||
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.92 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.92 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.92 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.92 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.92 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.92 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.92 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.92 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.92 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.92 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.92 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.92 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.92 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.92 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.92 | |
| KOG0395|consensus | 196 | 99.92 | ||
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.91 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.91 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.91 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.91 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.91 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.91 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.91 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.91 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.91 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.91 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.91 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.91 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.91 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.91 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 99.91 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.91 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.91 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.9 | |
| KOG0088|consensus | 218 | 99.9 | ||
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.9 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.9 | |
| KOG0083|consensus | 192 | 99.9 | ||
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.9 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.89 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.89 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.89 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.89 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.88 | |
| KOG0070|consensus | 181 | 99.88 | ||
| KOG0097|consensus | 215 | 99.88 | ||
| KOG0073|consensus | 185 | 99.87 | ||
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.86 | |
| KOG0393|consensus | 198 | 99.86 | ||
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.83 | |
| KOG0071|consensus | 180 | 99.83 | ||
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.83 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.83 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.83 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.82 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.82 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.81 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.8 | |
| KOG4252|consensus | 246 | 99.8 | ||
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.79 | |
| PTZ00099 | 176 | rab6; Provisional | 99.79 | |
| KOG0076|consensus | 197 | 99.79 | ||
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.79 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.79 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.78 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.77 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.76 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.76 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.76 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.75 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.75 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.75 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.74 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.74 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.73 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.73 | |
| KOG0074|consensus | 185 | 99.73 | ||
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.72 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.72 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.72 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.72 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.71 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.71 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.7 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.7 | |
| KOG0072|consensus | 182 | 99.7 | ||
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.7 | |
| KOG3883|consensus | 198 | 99.69 | ||
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.69 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.69 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.69 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.68 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.68 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.67 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.67 | |
| KOG0096|consensus | 216 | 99.66 | ||
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.65 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.65 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.65 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.65 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.64 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.64 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.63 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.61 | |
| KOG1673|consensus | 205 | 99.61 | ||
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.61 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.6 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.6 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.6 | |
| KOG0077|consensus | 193 | 99.59 | ||
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.59 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.58 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.57 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.57 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.56 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.56 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.56 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.56 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.56 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.56 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.55 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.54 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.54 | |
| KOG4423|consensus | 229 | 99.54 | ||
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.53 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.53 | |
| KOG1489|consensus | 366 | 99.5 | ||
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.5 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.49 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.49 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.48 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.48 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.47 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.45 | |
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 99.44 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 99.43 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.43 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.42 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.42 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.42 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.42 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 99.41 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.41 | |
| KOG1707|consensus | 625 | 99.41 | ||
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.4 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.4 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.4 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.4 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.39 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.37 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.37 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.35 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.34 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.32 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.32 | |
| KOG1490|consensus | 620 | 99.32 | ||
| PRK13351 | 687 | elongation factor G; Reviewed | 99.32 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.3 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.3 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.29 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.29 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.28 | |
| KOG1423|consensus | 379 | 99.26 | ||
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.26 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.25 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.25 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.23 | |
| KOG0082|consensus | 354 | 99.23 | ||
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.22 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.22 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.22 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.21 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.2 | |
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 99.2 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 99.19 | |
| KOG0090|consensus | 238 | 99.18 | ||
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.18 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.18 | |
| KOG1191|consensus | 531 | 99.15 | ||
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.15 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.13 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.12 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.11 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.08 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.04 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.0 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 99.0 | |
| PF00503 | 389 | G-alpha: G-protein alpha subunit; InterPro: IPR001 | 98.99 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 98.98 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 98.97 | |
| KOG1532|consensus | 366 | 98.97 | ||
| COG3596 | 296 | Predicted GTPase [General function prediction only | 98.96 | |
| PRK13768 | 253 | GTPase; Provisional | 98.96 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 98.96 | |
| KOG0462|consensus | 650 | 98.95 | ||
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 98.95 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 98.93 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 98.9 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 98.89 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 98.89 | |
| KOG3905|consensus | 473 | 98.84 | ||
| KOG0085|consensus | 359 | 98.83 | ||
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 98.83 | |
| KOG1145|consensus | 683 | 98.76 | ||
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 98.73 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 98.73 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 98.71 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 98.71 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 98.7 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 98.67 | |
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 98.66 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 98.61 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 98.61 | |
| KOG3886|consensus | 295 | 98.61 | ||
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 98.61 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 98.59 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 98.59 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 98.59 | |
| KOG1707|consensus | 625 | 98.57 | ||
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 98.55 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 98.52 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 98.51 | |
| KOG0099|consensus | 379 | 98.47 | ||
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 98.46 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 98.44 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 98.42 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 98.4 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 98.4 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 98.37 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.35 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 98.32 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.29 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 98.29 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.28 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 98.28 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 98.26 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.21 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.19 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 98.19 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.16 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.14 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 98.14 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 98.1 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.08 | |
| KOG0705|consensus | 749 | 98.08 | ||
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 98.06 | |
| KOG1954|consensus | 532 | 98.05 | ||
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.03 | |
| KOG2655|consensus | 366 | 98.02 | ||
| KOG0468|consensus | 971 | 98.01 | ||
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 97.98 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 97.96 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 97.93 | |
| KOG0461|consensus | 522 | 97.92 | ||
| KOG0458|consensus | 603 | 97.89 | ||
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 97.87 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 97.86 | |
| KOG1486|consensus | 364 | 97.86 | ||
| KOG0410|consensus | 410 | 97.82 | ||
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 97.81 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 97.8 | |
| PF06858 | 58 | NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte | 97.79 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 97.75 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 97.74 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 97.7 | |
| KOG1547|consensus | 336 | 97.68 | ||
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 97.68 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 97.67 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 97.67 | |
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 97.63 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 97.6 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 97.59 | |
| KOG3887|consensus | 347 | 97.58 | ||
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 97.56 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 97.55 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 97.52 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 97.51 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 97.51 | |
| KOG1491|consensus | 391 | 97.49 | ||
| KOG2486|consensus | 320 | 97.49 | ||
| PRK12289 | 352 | GTPase RsgA; Reviewed | 97.47 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 97.45 | |
| cd03112 | 158 | CobW_like The function of this protein family is u | 97.45 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 97.43 | |
| KOG0448|consensus | 749 | 97.34 | ||
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 97.3 | |
| KOG1144|consensus | 1064 | 97.29 | ||
| PF02492 | 178 | cobW: CobW/HypB/UreG, nucleotide-binding domain; I | 97.29 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 97.29 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 97.26 | |
| cd03110 | 179 | Fer4_NifH_child This protein family's function is | 97.22 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 97.22 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 97.21 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.13 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 97.12 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 97.12 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 97.11 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 97.1 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 97.1 | |
| PRK13695 | 174 | putative NTPase; Provisional | 97.08 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 97.07 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 97.03 | |
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 97.0 | |
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 97.0 | |
| COG0523 | 323 | Putative GTPases (G3E family) [General function pr | 96.99 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 96.94 | |
| KOG0467|consensus | 887 | 96.85 | ||
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 96.84 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 96.82 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 96.81 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 96.79 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 96.73 | |
| PF09547 | 492 | Spore_IV_A: Stage IV sporulation protein A (spore_ | 96.68 | |
| KOG0464|consensus | 753 | 96.66 | ||
| KOG0447|consensus | 980 | 96.64 | ||
| KOG3859|consensus | 406 | 96.58 | ||
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 96.57 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 96.4 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 96.4 | |
| TIGR02475 | 341 | CobW cobalamin biosynthesis protein CobW. A broade | 96.39 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 96.37 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 96.37 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 96.34 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 96.3 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 96.23 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 96.19 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 96.14 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 96.13 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 96.12 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 96.11 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 96.06 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 96.05 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 96.03 | |
| KOG2485|consensus | 335 | 96.01 | ||
| COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleoti | 96.0 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 95.99 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 95.98 | |
| KOG2484|consensus | 435 | 95.91 | ||
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 95.87 | |
| cd02117 | 212 | NifH_like This family contains the NifH (iron prot | 95.82 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 95.81 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 95.8 | |
| cd02032 | 267 | Bchl_like This family of proteins contains bchL an | 95.76 | |
| cd02036 | 179 | MinD Bacterial cell division requires the formatio | 95.74 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 95.73 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 95.72 | |
| KOG1424|consensus | 562 | 95.72 | ||
| KOG0463|consensus | 641 | 95.7 | ||
| PF13191 | 185 | AAA_16: AAA ATPase domain; PDB: 2V1U_A. | 95.65 | |
| KOG0460|consensus | 449 | 95.63 | ||
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 95.63 | |
| PF13521 | 163 | AAA_28: AAA domain; PDB: 1LW7_A. | 95.62 | |
| KOG0465|consensus | 721 | 95.58 | ||
| COG3523 | 1188 | IcmF Type VI protein secretion system component Va | 95.57 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 95.57 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 95.51 | |
| KOG2423|consensus | 572 | 95.5 | ||
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 95.49 | |
| PRK06217 | 183 | hypothetical protein; Validated | 95.44 | |
| PRK03839 | 180 | putative kinase; Provisional | 95.43 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 95.43 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 95.42 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 95.41 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 95.33 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 95.3 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 95.24 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 95.22 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 95.2 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 95.18 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 95.14 | |
| PRK14532 | 188 | adenylate kinase; Provisional | 95.12 | |
| PRK08233 | 182 | hypothetical protein; Provisional | 95.11 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 95.1 | |
| TIGR01281 | 268 | DPOR_bchL light-independent protochlorophyllide re | 95.08 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 95.07 | |
| TIGR01360 | 188 | aden_kin_iso1 adenylate kinase, isozyme 1 subfamil | 95.01 | |
| cd03111 | 106 | CpaE_like This protein family consists of proteins | 94.99 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 94.98 | |
| PRK14530 | 215 | adenylate kinase; Provisional | 94.98 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 94.97 | |
| cd00071 | 137 | GMPK Guanosine monophosphate kinase (GMPK, EC 2.7. | 94.96 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 94.93 | |
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 94.91 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 94.78 | |
| PRK13851 | 344 | type IV secretion system protein VirB11; Provision | 94.78 | |
| KOG1143|consensus | 591 | 94.77 | ||
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 94.77 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 94.7 | |
| PRK06696 | 223 | uridine kinase; Validated | 94.7 | |
| PTZ00088 | 229 | adenylate kinase 1; Provisional | 94.67 | |
| PRK02496 | 184 | adk adenylate kinase; Provisional | 94.66 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 94.65 | |
| PRK13949 | 169 | shikimate kinase; Provisional | 94.61 | |
| TIGR01359 | 183 | UMP_CMP_kin_fam UMP-CMP kinase family. This subfam | 94.6 | |
| cd01428 | 194 | ADK Adenylate kinase (ADK) catalyzes the reversibl | 94.59 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 94.56 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 94.55 | |
| PF05729 | 166 | NACHT: NACHT domain | 94.51 | |
| PHA00729 | 226 | NTP-binding motif containing protein | 94.51 | |
| PRK13900 | 332 | type IV secretion system ATPase VirB11; Provisiona | 94.48 | |
| PRK00625 | 173 | shikimate kinase; Provisional | 94.47 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 94.46 | |
| KOG1487|consensus | 358 | 94.44 | ||
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 94.43 | |
| PRK14738 | 206 | gmk guanylate kinase; Provisional | 94.42 | |
| PF03205 | 140 | MobB: Molybdopterin guanine dinucleotide synthesis | 94.42 | |
| PF04665 | 241 | Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 | 94.41 | |
| PRK14531 | 183 | adenylate kinase; Provisional | 94.39 | |
| PRK14737 | 186 | gmk guanylate kinase; Provisional | 94.38 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 94.37 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 94.36 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 94.35 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 94.31 | |
| smart00763 | 361 | AAA_PrkA PrkA AAA domain. This is a family of PrkA | 94.28 | |
| TIGR01313 | 163 | therm_gnt_kin carbohydrate kinase, thermoresistant | 94.25 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 94.25 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 94.21 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 94.2 | |
| COG0194 | 191 | Gmk Guanylate kinase [Nucleotide transport and met | 94.18 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 94.17 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 94.17 |
| >KOG0084|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.9e-32 Score=243.38 Aligned_cols=151 Identities=23% Similarity=0.439 Sum_probs=136.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
...+||+|+|++|||||+|+.||.++.|.+.|..|+|++++. ++++.++++||||+|||+|+.+..+||++|+++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 346899999999999999999999999999999999999874 6889999999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||+++++||.++..|+.++.+.. ..++|.++||||+
T Consensus 87 -----------------------------------------~vyDiT~~~SF~~v~~Wi~Ei~~~~-~~~v~~lLVGNK~ 124 (205)
T KOG0084|consen 87 -----------------------------------------FVYDITKQESFNNVKRWIQEIDRYA-SENVPKLLVGNKC 124 (205)
T ss_pred -----------------------------------------EEEEcccHHHhhhHHHHHHHhhhhc-cCCCCeEEEeecc
Confidence 9999999999999999999996653 4679999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCc-EEEEeccc-hHHHHHHhhhh
Q psy2970 174 DLPNA-----LDEKELIDRIMID-FWITLTLL-IRWCESFLHHF 210 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~-~~etSAk~-~~~~~~~l~~i 210 (329)
|+.+. +++++++.+++++ |+|||||. .++.+.|+...
T Consensus 125 Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la 168 (205)
T KOG0084|consen 125 DLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLA 168 (205)
T ss_pred ccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHH
Confidence 99875 6789999999999 99999999 55555555433
|
|
| >KOG0092|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.5e-30 Score=227.88 Aligned_cols=152 Identities=24% Similarity=0.416 Sum_probs=137.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
..++||+|+|+.|||||||+-|+..++|.+...||+|..+.. ++...+++.||||+|||+|+++.++|+|+|++.|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 457999999999999999999999999998789999987764 4566799999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||+++.+||..++.|+.++.+... +++-|.|||||+
T Consensus 83 -----------------------------------------vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~ 120 (200)
T KOG0092|consen 83 -----------------------------------------VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKA 120 (200)
T ss_pred -----------------------------------------EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchh
Confidence 99999999999999999999988755 778888999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
||.+. .+++.++++.+..|+|||||+..+.+++++.+.
T Consensus 121 DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia 163 (200)
T KOG0092|consen 121 DLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIA 163 (200)
T ss_pred hhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHH
Confidence 99874 679999999999999999999777777776664
|
|
| >KOG0078|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-29 Score=227.35 Aligned_cols=153 Identities=25% Similarity=0.417 Sum_probs=139.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhcccee
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAI 92 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~i 92 (329)
...-+||+++|++|||||+|+.+|..+.|...+..|+|++++. +++..+.+++|||+||++|+.+...|+++|+++
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi 88 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGI 88 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCee
Confidence 3456899999999999999999999999999999999999874 578889999999999999999999999999999
Q ss_pred EeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 93 VWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+ +|||+++..||+++..|++.+-+.. ..++|++|||||
T Consensus 89 ~-----------------------------------------LvyDitne~Sfeni~~W~~~I~e~a-~~~v~~~LvGNK 126 (207)
T KOG0078|consen 89 L-----------------------------------------LVYDITNEKSFENIRNWIKNIDEHA-SDDVVKILVGNK 126 (207)
T ss_pred E-----------------------------------------EEEEccchHHHHHHHHHHHHHHhhC-CCCCcEEEeecc
Confidence 9 9999999999999999999887654 458999999999
Q ss_pred CCCCCh-----hhHHHHHHHhCCcEEEEeccc-hHHHHHHhhhhc
Q psy2970 173 RDLPNA-----LDEKELIDRIMIDFWITLTLL-IRWCESFLHHFG 211 (329)
Q Consensus 173 ~Dl~~~-----~e~~~l~~~~~~~~~etSAk~-~~~~~~~l~~i~ 211 (329)
+|+..+ +.++.+|.++|+.|+|||||+ .|+.+.|++..+
T Consensus 127 ~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~ 171 (207)
T KOG0078|consen 127 CDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLAR 171 (207)
T ss_pred ccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHHH
Confidence 999874 678999999999999999999 777777776655
|
|
| >KOG0094|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-29 Score=224.90 Aligned_cols=153 Identities=21% Similarity=0.375 Sum_probs=140.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
.+.+||+++|+.+|||||||+||..+.|...|.+|||+++.. +.+..+++++|||+|||+|+.+.+.|++++.++|
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav 99 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 99 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence 356999999999999999999999999999999999999874 5688899999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++|..||+....|+..+.......++-|+|||||.
T Consensus 100 -----------------------------------------iVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKt 138 (221)
T KOG0094|consen 100 -----------------------------------------IVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKT 138 (221)
T ss_pred -----------------------------------------EEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccc
Confidence 999999999999999999999988776678899999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
||.+. .|++..+++++..|+||||+.+.+.++++..+.
T Consensus 139 DL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIa 181 (221)
T KOG0094|consen 139 DLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIA 181 (221)
T ss_pred cccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHH
Confidence 99886 568889999999999999999777777776654
|
|
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-28 Score=216.23 Aligned_cols=165 Identities=32% Similarity=0.626 Sum_probs=142.8
Q ss_pred ChHHHHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccc
Q psy2970 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS 80 (329)
Q Consensus 1 m~~~~~~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~ 80 (329)
|+.++..+ +++.+.++++||+++|++|||||||++++..+.+. .+.||+|.++..++.+++.+++||+||+++++.
T Consensus 1 m~~~~~~~---~~~~~~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~ 76 (181)
T PLN00223 1 MGLSFTKL---FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP 76 (181)
T ss_pred CchHHHHH---HHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEEEEEECCEEEEEEECCCCHHHHH
Confidence 66565443 46666788899999999999999999999988876 578999998888888889999999999999999
Q ss_pred hHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc
Q psy2970 81 MWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ 160 (329)
Q Consensus 81 ~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~ 160 (329)
+|..+++++|++| +|||++++++++++..++.++++...
T Consensus 77 ~~~~~~~~a~~iI-----------------------------------------~V~D~s~~~s~~~~~~~l~~~l~~~~ 115 (181)
T PLN00223 77 LWRHYFQNTQGLI-----------------------------------------FVVDSNDRDRVVEARDELHRMLNEDE 115 (181)
T ss_pred HHHHHhccCCEEE-----------------------------------------EEEeCCcHHHHHHHHHHHHHHhcCHh
Confidence 9999999999999 99999999999999999988877655
Q ss_pred CCCCcEEEEEEcCCCCChhhHHHHHHHhCCc--------EEEEeccchHHHHHHhhhh
Q psy2970 161 LIGIPILVLGNKRDLPNALDEKELIDRIMID--------FWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 161 ~~~iPIiLVgNK~Dl~~~~e~~~l~~~~~~~--------~~etSAk~~~~~~~~l~~i 210 (329)
..++|++||+||+|++++.+.+++++.++++ ++++||++++++++.++.+
T Consensus 116 ~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l 173 (181)
T PLN00223 116 LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173 (181)
T ss_pred hCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHH
Confidence 5789999999999999887888888888764 5689999987877777655
|
|
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-28 Score=215.65 Aligned_cols=149 Identities=19% Similarity=0.308 Sum_probs=129.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
+.++||+++|++|||||||++++..+.|...+.||++..+.. ++++.+.+++|||+|+++|..++..+++++|+++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i- 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL- 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE-
Confidence 457899999999999999999999999998999999977653 5677899999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHH-HHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEAS-RNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~-~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||+++++||+++ ..|+.++.+. .+++|++|||||+
T Consensus 82 ----------------------------------------lvyDit~~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~ 119 (182)
T cd04172 82 ----------------------------------------ICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKS 119 (182)
T ss_pred ----------------------------------------EEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEeECh
Confidence 99999999999997 6888887664 3579999999999
Q ss_pred CCCC-----------------hhhHHHHHHHhCC-cEEEEeccchHH-HHHHhhh
Q psy2970 174 DLPN-----------------ALDEKELIDRIMI-DFWITLTLLIRW-CESFLHH 209 (329)
Q Consensus 174 Dl~~-----------------~~e~~~l~~~~~~-~~~etSAk~~~~-~~~~l~~ 209 (329)
|+.+ ..+++++++++++ +|+||||+++.+ .++.++.
T Consensus 120 DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~ 174 (182)
T cd04172 120 DLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHV 174 (182)
T ss_pred hhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHH
Confidence 9853 1568999999995 899999999654 5555443
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=213.60 Aligned_cols=149 Identities=21% Similarity=0.327 Sum_probs=128.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE---EeeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~---~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
+.+||+++|++|||||||++++..+.|...+.||++..+. .++++.+.+++|||+|+++|+.+++.+++++|+++
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~i-- 79 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFI-- 79 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEE--
Confidence 3589999999999999999999999998889999998775 35777899999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHH-HHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRN-ELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~-~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||+++++||+++.. |..++.+. ..++|++|||||.|
T Consensus 80 ---------------------------------------lvydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~D 118 (191)
T cd01875 80 ---------------------------------------ICFSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKD 118 (191)
T ss_pred ---------------------------------------EEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChh
Confidence 9999999999999974 76666543 35799999999999
Q ss_pred CCCh-----------------hhHHHHHHHhC-CcEEEEeccchHHHHHHhhhh
Q psy2970 175 LPNA-----------------LDEKELIDRIM-IDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 175 l~~~-----------------~e~~~l~~~~~-~~~~etSAk~~~~~~~~l~~i 210 (329)
+.+. .++++++++++ .+|+||||+++.+.++.+..+
T Consensus 119 L~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l 172 (191)
T cd01875 119 LRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEA 172 (191)
T ss_pred hhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHH
Confidence 9643 35677888888 589999999977777766554
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-27 Score=212.32 Aligned_cols=147 Identities=18% Similarity=0.288 Sum_probs=127.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
++||+++|++|||||||++++.++.|...+.||++..+.. ++++.+.+++|||+|++++..+++.+++++|+++
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~i--- 77 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVL--- 77 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEE---
Confidence 4799999999999999999999999998999999877652 5677899999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHH-HHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEAS-RNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~-~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||+++++||+++ ..|+.++.+. .+++|++|||||+|+
T Consensus 78 --------------------------------------lvfdit~~~Sf~~~~~~w~~~i~~~--~~~~~iilVgnK~DL 117 (178)
T cd04131 78 --------------------------------------ICFDISRPETLDSVLKKWRGEIQEF--CPNTKVLLVGCKTDL 117 (178)
T ss_pred --------------------------------------EEEECCChhhHHHHHHHHHHHHHHH--CCCCCEEEEEEChhh
Confidence 99999999999996 6888887664 357999999999998
Q ss_pred CC-----------------hhhHHHHHHHhCC-cEEEEeccchHH-HHHHhhh
Q psy2970 176 PN-----------------ALDEKELIDRIMI-DFWITLTLLIRW-CESFLHH 209 (329)
Q Consensus 176 ~~-----------------~~e~~~l~~~~~~-~~~etSAk~~~~-~~~~l~~ 209 (329)
.+ ..+++++++++++ +|+||||+++.. .++++..
T Consensus 118 ~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~ 170 (178)
T cd04131 118 RTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHV 170 (178)
T ss_pred hcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHH
Confidence 53 2578899999997 799999999652 5554433
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >KOG0080|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-28 Score=213.64 Aligned_cols=142 Identities=20% Similarity=0.303 Sum_probs=129.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
.+||+++|++|||||||+.+|+.+.|.+....|+|++++ .++++.+++.||||+|||+|+.+.+.|+++|.++|
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI-- 88 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII-- 88 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE--
Confidence 489999999999999999999999999887888999886 37899999999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++.+++|.++..|+.++-.....+++-.++||||+|.
T Consensus 89 ---------------------------------------lVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDk 129 (209)
T KOG0080|consen 89 ---------------------------------------LVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDK 129 (209)
T ss_pred ---------------------------------------EEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccc
Confidence 99999999999999999999866656678888999999998
Q ss_pred CCh-----hhHHHHHHHhCCcEEEEeccchHH
Q psy2970 176 PNA-----LDEKELIDRIMIDFWITLTLLIRW 202 (329)
Q Consensus 176 ~~~-----~e~~~l~~~~~~~~~etSAk~~~~ 202 (329)
.++ +|+..+++++++.|+|+|||+...
T Consensus 130 es~R~V~reEG~kfAr~h~~LFiE~SAkt~~~ 161 (209)
T KOG0080|consen 130 ESERVVDREEGLKFARKHRCLFIECSAKTREN 161 (209)
T ss_pred hhcccccHHHHHHHHHhhCcEEEEcchhhhcc
Confidence 743 678899999999999999999333
|
|
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=212.47 Aligned_cols=148 Identities=22% Similarity=0.309 Sum_probs=129.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEeecc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~ 97 (329)
+||+++|++|||||||+.++..+.|...+.||++..+.. ++++.+++.||||+|+++++.++..+++++++++
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~i---- 77 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFV---- 77 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEE----
Confidence 689999999999999999999999998899999977653 4667799999999999999999999999999999
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHH-HHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEAS-RNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~-~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||+++++||+++ ..|+.++.+.. .++|++|||||+|+.
T Consensus 78 -------------------------------------lvyd~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~ 118 (176)
T cd04133 78 -------------------------------------LAFSLISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLR 118 (176)
T ss_pred -------------------------------------EEEEcCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhc
Confidence 99999999999998 67988886542 579999999999994
Q ss_pred C---------------hhhHHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 177 N---------------ALDEKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 177 ~---------------~~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
+ ..+++++++++++ +|+||||+++.+.++++..+.
T Consensus 119 ~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~ 169 (176)
T cd04133 119 DDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAI 169 (176)
T ss_pred cChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHH
Confidence 3 2467889999998 599999999777777776553
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-27 Score=202.28 Aligned_cols=151 Identities=17% Similarity=0.291 Sum_probs=130.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
++||+++|++|||||||++++..+.+...+.||++..+.+ +++..+.+++|||||++++..++..+++++++++
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i--- 77 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFV--- 77 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEE---
Confidence 4799999999999999999999999988888998755443 4566788999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+.+..|+.++.+.....++|+++|+||+|+.
T Consensus 78 --------------------------------------lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (163)
T cd04136 78 --------------------------------------LVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLE 119 (163)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 999999999999999999988775445689999999999996
Q ss_pred Ch-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 177 NA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 177 ~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+. .+..+++++++.+++++||+++.+.+++++.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 120 DERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred ccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 53 346678888899999999999777777776553
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >KOG0098|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.7e-28 Score=215.37 Aligned_cols=151 Identities=19% Similarity=0.275 Sum_probs=136.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
.-.+|++++|+.|||||+|+.||++..|.+.+..|+|+++. .+++++++++||||+|||.|++....||++|.+.+
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 34689999999999999999999999999999999998874 47899999999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||+++++||..+..|+.++.+.. ..+..|+|+|||+
T Consensus 84 -----------------------------------------LVydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKs 121 (216)
T KOG0098|consen 84 -----------------------------------------LVYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKS 121 (216)
T ss_pred -----------------------------------------EEEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchh
Confidence 9999999999999999999998864 4789999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
||... +|++++|++.++.|+||||++..+.|+.+..+
T Consensus 122 DL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nt 163 (216)
T KOG0098|consen 122 DLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINT 163 (216)
T ss_pred hhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHH
Confidence 99764 78999999999999999999955555555443
|
|
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-27 Score=213.72 Aligned_cols=151 Identities=19% Similarity=0.338 Sum_probs=133.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
...+||+++|++|||||||++++..+.+...+.||++.++.. +++..+.+++|||+|++++..++..+++++|+++
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 456999999999999999999999999988888888877642 4566789999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++|+++..|+.++.+. .+++|++|||||+
T Consensus 84 -----------------------------------------lVfD~t~~~Sf~~~~~w~~~i~~~--~~~~piilVGNK~ 120 (189)
T cd04121 84 -----------------------------------------LVYDITNRWSFDGIDRWIKEIDEH--APGVPKILVGNRL 120 (189)
T ss_pred -----------------------------------------EEEECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECc
Confidence 999999999999999999999664 3689999999999
Q ss_pred CCCC-----hhhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPN-----ALDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~-----~~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.. ..++++++++.+++|+||||+++.+.++.++.+.
T Consensus 121 DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~ 163 (189)
T cd04121 121 HLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELA 163 (189)
T ss_pred cchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence 9965 2578899999999999999999777777776553
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=219.92 Aligned_cols=150 Identities=19% Similarity=0.286 Sum_probs=129.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
...+||+++|++|||||||++++..+.|...|.||++..+.. ++++.+.+.||||+|+++|+.++..+++++|+++
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI- 89 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL- 89 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE-
Confidence 357899999999999999999999999999999999987753 5677899999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHH-HHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEAS-RNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~-~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++|+.+ ..|+.++.+. .+++|++|||||+
T Consensus 90 ----------------------------------------lVyDit~~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~ 127 (232)
T cd04174 90 ----------------------------------------LCFDISRPETVDSALKKWKAEIMDY--CPSTRILLIGCKT 127 (232)
T ss_pred ----------------------------------------EEEECCChHHHHHHHHHHHHHHHHh--CCCCCEEEEEECc
Confidence 99999999999985 7888888654 2578999999999
Q ss_pred CCCC-----------------hhhHHHHHHHhCC-cEEEEeccchH-HHHHHhhhh
Q psy2970 174 DLPN-----------------ALDEKELIDRIMI-DFWITLTLLIR-WCESFLHHF 210 (329)
Q Consensus 174 Dl~~-----------------~~e~~~l~~~~~~-~~~etSAk~~~-~~~~~l~~i 210 (329)
|+.+ .++++++++++++ .|+||||+++. ..++++..+
T Consensus 128 DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~ 183 (232)
T cd04174 128 DLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSA 183 (232)
T ss_pred ccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHH
Confidence 9953 1578999999998 69999999964 455555443
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=203.11 Aligned_cols=150 Identities=17% Similarity=0.291 Sum_probs=131.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
++||+++|++|||||||++++..+.+...+.||++..+.. +++..+.+++|||||++++..+++.+++++|+++
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i--- 77 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFV--- 77 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEE---
Confidence 5799999999999999999999998887888999866543 4566788999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+.+..|+..+.+.....++|+++|+||+|+.
T Consensus 78 --------------------------------------lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (164)
T cd04175 78 --------------------------------------LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 119 (164)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcch
Confidence 999999999999999999999876556789999999999997
Q ss_pred Ch-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 177 NA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 177 ~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+. .++++++++++++++++||+++.++++++..+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l 158 (164)
T cd04175 120 DERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDL 158 (164)
T ss_pred hccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 53 45678889999999999999987777777654
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-27 Score=213.72 Aligned_cols=148 Identities=17% Similarity=0.346 Sum_probs=126.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--E--eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~--i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
++|+++|++|||||||++++..+.|...+.+|++.++. . ++++.+.+++|||+|+++++.++..+++++|+++
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iI--- 77 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII--- 77 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEE---
Confidence 47999999999999999999999998889999987764 2 4566799999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||+++++||+++..|+..+.+. ...++|++|||||+|+.
T Consensus 78 --------------------------------------lVfDvtd~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~ 118 (202)
T cd04120 78 --------------------------------------LVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCE 118 (202)
T ss_pred --------------------------------------EEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccc
Confidence 999999999999999998876443 34679999999999996
Q ss_pred Ch-----hhHHHHHHHh-CCcEEEEeccchHHHHHHhhhh
Q psy2970 177 NA-----LDEKELIDRI-MIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 177 ~~-----~e~~~l~~~~-~~~~~etSAk~~~~~~~~l~~i 210 (329)
+. .+++++++++ ++.|+||||+++.+.++.++.+
T Consensus 119 ~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l 158 (202)
T cd04120 119 TDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 158 (202)
T ss_pred cccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHH
Confidence 43 4567788886 7899999999966666666444
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-27 Score=207.80 Aligned_cols=150 Identities=19% Similarity=0.329 Sum_probs=130.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE---EeeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~---~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
.+||+++|++|||||||++++..+++...+.||++..+. .+++..+.+++|||||+++++.++..+++.+|+++
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~i--- 78 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFI--- 78 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEE---
Confidence 589999999999999999999999998888999987665 24667789999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+.+..|+..+.+.....++|+++||||+|+.
T Consensus 79 --------------------------------------lv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~ 120 (172)
T cd04141 79 --------------------------------------ICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLE 120 (172)
T ss_pred --------------------------------------EEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhh
Confidence 999999999999999887776554334679999999999986
Q ss_pred Ch-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 177 NA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 177 ~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+. .++.+++++.+++|+||||+++.++++.++.+
T Consensus 121 ~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l 159 (172)
T cd04141 121 SQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGL 159 (172)
T ss_pred hcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHH
Confidence 53 56788899999999999999977777766544
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-27 Score=198.08 Aligned_cols=150 Identities=19% Similarity=0.289 Sum_probs=130.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
++||+++|++|||||||++++.++.+...+.||++..+.. +++..+.+.+|||||+++++.++..+++.+++++
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i--- 77 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL--- 77 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEE---
Confidence 4799999999999999999999999988888998866543 4566678999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+++..|+.++.+.....++|+++|+||+|+.
T Consensus 78 --------------------------------------~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 119 (162)
T cd04138 78 --------------------------------------CVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLA 119 (162)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 999999999999999999888776545689999999999997
Q ss_pred Ch----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 177 NA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 177 ~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+. .++.++++.++.+++++||+++.+.++++..+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 157 (162)
T cd04138 120 ARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTL 157 (162)
T ss_pred cceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHH
Confidence 53 45677888889999999999977777777554
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-27 Score=203.88 Aligned_cols=151 Identities=24% Similarity=0.388 Sum_probs=132.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE--e--e----------CceEEEEEEecCCCccccchHHH
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK--I--T----------KGNVTIKVWDIGGQPRFRSMWER 84 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~--i--~----------~~~~~l~I~DtpG~e~~~~~~~~ 84 (329)
..+||+++|++|||||||++++.++.+.+.+.||++.++.. + . ...+.+.+|||||++++..++..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 46899999999999999999999999998999999877653 2 1 34688999999999999999999
Q ss_pred HhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCC
Q psy2970 85 YCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGI 164 (329)
Q Consensus 85 ~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~i 164 (329)
+++++|+++ +|||++++++|+.+..|+.++.......++
T Consensus 83 ~~~~~~~~i-----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~ 121 (180)
T cd04127 83 FFRDAMGFL-----------------------------------------LIFDLTNEQSFLNVRNWMSQLQTHAYCENP 121 (180)
T ss_pred HhCCCCEEE-----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 999999999 999999999999999999988765445679
Q ss_pred cEEEEEEcCCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 165 PILVLGNKRDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 165 PIiLVgNK~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|+++||||+|+.+. .++++++++++++++++||+++.+.+++++.+
T Consensus 122 piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l 172 (180)
T cd04127 122 DIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATGTNVEKAVERL 172 (180)
T ss_pred cEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999653 46788999999999999999987777777655
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.6e-27 Score=206.84 Aligned_cols=157 Identities=31% Similarity=0.614 Sum_probs=134.7
Q ss_pred HHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccce
Q psy2970 12 FKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNA 91 (329)
Q Consensus 12 ~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~ 91 (329)
+++.+.++++||+++|++|||||||++++..+.+.. +.||++.++..++.+++.+++|||||+++++.++..+++++|+
T Consensus 9 ~~~~~~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~ 87 (182)
T PTZ00133 9 FKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNG 87 (182)
T ss_pred HHHhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCE
Confidence 456677788999999999999999999999888864 6899998888788888999999999999999999999999999
Q ss_pred eEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEE
Q psy2970 92 IVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGN 171 (329)
Q Consensus 92 iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgN 171 (329)
+| +|||++++++|+....++.+++......++|++||+|
T Consensus 88 iI-----------------------------------------~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~N 126 (182)
T PTZ00133 88 LI-----------------------------------------FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFAN 126 (182)
T ss_pred EE-----------------------------------------EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEe
Confidence 99 9999999999999999888887654456789999999
Q ss_pred cCCCCChhhHHHHHHHhCC--------cEEEEeccchHHHHHHhhhh
Q psy2970 172 KRDLPNALDEKELIDRIMI--------DFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 172 K~Dl~~~~e~~~l~~~~~~--------~~~etSAk~~~~~~~~l~~i 210 (329)
|.|+.+....+++++.++. .++++||+++.++++.++.+
T Consensus 127 K~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l 173 (182)
T PTZ00133 127 KQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWL 173 (182)
T ss_pred CCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHH
Confidence 9999876555566666654 36699999988788777654
|
|
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.7e-27 Score=200.83 Aligned_cols=149 Identities=19% Similarity=0.297 Sum_probs=129.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
.+||+++|++|||||||++++..+.+.+.+.||++.++.. +++..+.+.+|||||++++...+..+++++++++
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i-- 79 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL-- 79 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE--
Confidence 3799999999999999999999999988888898877642 4666789999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++++|+.+..|+.++... ...++|+++||||+|+
T Consensus 80 ---------------------------------------lv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~Dl 119 (166)
T cd04122 80 ---------------------------------------MVYDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADL 119 (166)
T ss_pred ---------------------------------------EEEECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECccc
Confidence 999999999999999999887554 2357899999999999
Q ss_pred CCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 176 PNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 176 ~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
.++ .++++++++.+++++|+||+++.+.++.+..+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l 159 (166)
T cd04122 120 EAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLET 159 (166)
T ss_pred ccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 654 56788889999999999999977777765443
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >KOG0394|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.2e-28 Score=214.06 Aligned_cols=152 Identities=23% Similarity=0.374 Sum_probs=134.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
+.-+||+++|++|||||||+|++..++|...|..|||.++.. ++++.+.++||||+|||+|.++...+++++|..+
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 456999999999999999999999999999999999988753 6888899999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc---CCCCcEEEEE
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ---LIGIPILVLG 170 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~---~~~iPIiLVg 170 (329)
+|||+.+++||+++..|-.+.+.... ....|++|+|
T Consensus 87 -----------------------------------------lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilG 125 (210)
T KOG0394|consen 87 -----------------------------------------LVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILG 125 (210)
T ss_pred -----------------------------------------EEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEc
Confidence 99999999999999999999887543 3568999999
Q ss_pred EcCCCCCh-------hhHHHHHHHhC-CcEEEEeccc-hHHHHHHhhhh
Q psy2970 171 NKRDLPNA-------LDEKELIDRIM-IDFWITLTLL-IRWCESFLHHF 210 (329)
Q Consensus 171 NK~Dl~~~-------~e~~~l~~~~~-~~~~etSAk~-~~~~~~~l~~i 210 (329)
||+|+.+. ..++++++..| +||||||||. .|+.++|....
T Consensus 126 NKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia 174 (210)
T KOG0394|consen 126 NKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIA 174 (210)
T ss_pred ccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHH
Confidence 99999762 45888988876 8999999999 66666665443
|
|
| >KOG0075|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-27 Score=207.32 Aligned_cols=167 Identities=65% Similarity=1.028 Sum_probs=157.3
Q ss_pred ChHHHHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccc
Q psy2970 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS 80 (329)
Q Consensus 1 m~~~~~~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~ 80 (329)
|.+++++.++|+++.||+.++.+.++|..++|||||+|.+..+++.+..+||+|.++++++.+.+.+.+||.|||.+|+.
T Consensus 1 m~~~~~k~L~wi~~~f~k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrs 80 (186)
T KOG0075|consen 1 MCAKLRKKLVWICNSFWKEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 80 (186)
T ss_pred ChhHHHHHHHHHHHHHHHheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc
Q psy2970 81 MWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ 160 (329)
Q Consensus 81 ~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~ 160 (329)
+|+.|++.+++++ ||+|.+|++.++..+..++.++.++.
T Consensus 81 mWerycR~v~aiv-----------------------------------------Y~VDaad~~k~~~sr~EL~~LL~k~~ 119 (186)
T KOG0075|consen 81 MWERYCRGVSAIV-----------------------------------------YVVDAADPDKLEASRSELHDLLDKPS 119 (186)
T ss_pred HHHHHhhcCcEEE-----------------------------------------EEeecCCcccchhhHHHHHHHhcchh
Confidence 9999999999999 99999999999999999999999999
Q ss_pred CCCCcEEEEEEcCCCCChhhHHHHHHHhCC--------cEEEEeccchHHHHHHhh
Q psy2970 161 LIGIPILVLGNKRDLPNALDEKELIDRIMI--------DFWITLTLLIRWCESFLH 208 (329)
Q Consensus 161 ~~~iPIiLVgNK~Dl~~~~e~~~l~~~~~~--------~~~etSAk~~~~~~~~l~ 208 (329)
..++|++|+|||+|++++...+++.+++|+ ..+.+|++...+.+...+
T Consensus 120 l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~ 175 (186)
T KOG0075|consen 120 LTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLD 175 (186)
T ss_pred hcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHH
Confidence 999999999999999999988899999984 478899999666555543
|
|
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=203.96 Aligned_cols=155 Identities=32% Similarity=0.615 Sum_probs=133.1
Q ss_pred cCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 15 LFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 15 ~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
.+.++++||+++|++|||||||++++..+++. .+.||++.++..+..+.+.+++|||||+++++.++..+++++|+++
T Consensus 8 ~~~~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii- 85 (175)
T smart00177 8 LFGNKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLI- 85 (175)
T ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEE-
Confidence 34467899999999999999999999888775 5789999888777778899999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||+++++++++...++.++++.....++|++||+||+|
T Consensus 86 ----------------------------------------~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~D 125 (175)
T smart00177 86 ----------------------------------------FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQD 125 (175)
T ss_pred ----------------------------------------EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcC
Confidence 9999999999999999999987654456799999999999
Q ss_pred CCChhhHHHHHHHhCC--------cEEEEeccchHHHHHHhhhhc
Q psy2970 175 LPNALDEKELIDRIMI--------DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 175 l~~~~e~~~l~~~~~~--------~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.+....+++.+.++. .++++||+++.+.++.++.+.
T Consensus 126 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 170 (175)
T smart00177 126 LPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLS 170 (175)
T ss_pred cccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHH
Confidence 9876556666666654 366899999888888776554
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=204.32 Aligned_cols=147 Identities=16% Similarity=0.247 Sum_probs=125.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE-E--eeCceEEEEEEecCCCccccchHHHHhhccceeEeecc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR-K--ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~-~--i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~ 97 (329)
+||+++|++|||||||++++..+.|...+.||++..+. . ++++.+.+.+|||+|++++..++..+++++|+++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~i---- 77 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL---- 77 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEE----
Confidence 69999999999999999999999998889999998775 2 4566689999999999999999999999999999
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHH-HHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRN-ELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~-~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+++.. |+.++... ..++|++|||||+|+.
T Consensus 78 -------------------------------------lv~d~~~~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~ 118 (175)
T cd01874 78 -------------------------------------VCFSVVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLR 118 (175)
T ss_pred -------------------------------------EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhh
Confidence 9999999999999975 77666543 3579999999999985
Q ss_pred Ch-----------------hhHHHHHHHhC-CcEEEEeccchHHHHHHhhhh
Q psy2970 177 NA-----------------LDEKELIDRIM-IDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 177 ~~-----------------~e~~~l~~~~~-~~~~etSAk~~~~~~~~l~~i 210 (329)
+. .++++++++++ ..|+|+||+++.+.+++++.+
T Consensus 119 ~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~ 170 (175)
T cd01874 119 DDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEA 170 (175)
T ss_pred hChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHH
Confidence 42 34566888887 689999999987777777554
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=197.56 Aligned_cols=151 Identities=17% Similarity=0.294 Sum_probs=129.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE---EeeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~---~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
++||+++|++|||||||++++..+.+.+.+.||++..+. .+++..+.+++|||||++++..++..+++++|+++
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i--- 77 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI--- 77 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEE---
Confidence 479999999999999999999999998888888764333 24566778999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+++..|+..+.+.....++|+++||||+|+.
T Consensus 78 --------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~ 119 (163)
T cd04176 78 --------------------------------------VVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE 119 (163)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 999999999999999999988775445789999999999985
Q ss_pred Ch-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 177 NA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 177 ~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.. .+...+++.++.+++++||+++..+++++..+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 120 SEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred hcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 43 356778888889999999999777777765543
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-26 Score=205.77 Aligned_cols=150 Identities=25% Similarity=0.318 Sum_probs=129.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----ee-CceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----IT-KGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~-~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
+||+++|++|||||||++++.++.+...+.||++.++.. ++ +..+.+.+|||||+++++.++..+++++++++
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~i-- 78 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAI-- 78 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEE--
Confidence 589999999999999999999999988899999976542 34 66889999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC---cCCCCcEEEEEEc
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP---QLIGIPILVLGNK 172 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~---~~~~iPIiLVgNK 172 (329)
+|||++++++|+++..|+.++.... ...++|++|||||
T Consensus 79 ---------------------------------------lv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK 119 (201)
T cd04107 79 ---------------------------------------IVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANK 119 (201)
T ss_pred ---------------------------------------EEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEEC
Confidence 9999999999999999988775432 2367999999999
Q ss_pred CCCCC-----hhhHHHHHHHhC-CcEEEEeccchHHHHHHhhhhc
Q psy2970 173 RDLPN-----ALDEKELIDRIM-IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 173 ~Dl~~-----~~e~~~l~~~~~-~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+.+ ..++++++++.+ .+++++||+++.+.+++++.+.
T Consensus 120 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~ 164 (201)
T cd04107 120 CDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLV 164 (201)
T ss_pred CCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHH
Confidence 99963 256888999998 6899999999777777665553
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-26 Score=203.64 Aligned_cols=153 Identities=20% Similarity=0.281 Sum_probs=133.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
..++||+++|++|||||||++++.++.+...+.||++..+.. +++..+.+++|||||++++..++..+++.+++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii- 81 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL- 81 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE-
Confidence 357999999999999999999999999988889999877763 5677889999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++++++|+.+..|+.++.+.....++|+++|+||+|
T Consensus 82 ----------------------------------------lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D 121 (189)
T PTZ00369 82 ----------------------------------------CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCD 121 (189)
T ss_pred ----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 9999999999999999999887764456899999999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.+. .++.++++.++.+++++||+++.+++..+..+.
T Consensus 122 l~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~ 163 (189)
T PTZ00369 122 LDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELV 163 (189)
T ss_pred cccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 9643 346778888899999999999777777765553
|
|
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-26 Score=195.13 Aligned_cols=149 Identities=17% Similarity=0.346 Sum_probs=129.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--E--eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~--i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+||+++|++|||||||++++.++++...+.||++.++. . +++..+.+++|||||++.+..++..+++++++++
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i--- 77 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVL--- 77 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEE---
Confidence 58999999999999999999999998889999987763 2 4567789999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcC----CCCcEEEEEEc
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQL----IGIPILVLGNK 172 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~----~~iPIiLVgNK 172 (329)
+|||++++++|+.+..|+.++.+.... .++|+++|+||
T Consensus 78 --------------------------------------lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 119 (168)
T cd04119 78 --------------------------------------LVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANK 119 (168)
T ss_pred --------------------------------------EEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEc
Confidence 999999999999999999988765332 57999999999
Q ss_pred CCCCC-----hhhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 173 RDLPN-----ALDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 173 ~Dl~~-----~~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+|+.+ ..+.+.++++.+++++++||+++.+.+++++.+
T Consensus 120 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 162 (168)
T cd04119 120 IDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTL 162 (168)
T ss_pred hhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 99973 245667888889999999999977777777654
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-26 Score=202.33 Aligned_cols=153 Identities=33% Similarity=0.612 Sum_probs=128.4
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 16 FWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 16 ~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
+.++++||+++|++|||||||++++..+.+. .+.||+|.++..+..+.+.+++|||||+++++.++..+++++|+++
T Consensus 5 ~~~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii-- 81 (168)
T cd04149 5 FGNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI-- 81 (168)
T ss_pred cCCCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEE--
Confidence 3467899999999999999999999988775 4688999888777778899999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++.+|+++..++.+++......++|++||+||+|+
T Consensus 82 ---------------------------------------~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 122 (168)
T cd04149 82 ---------------------------------------FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDL 122 (168)
T ss_pred ---------------------------------------EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCC
Confidence 99999999999999999998887654567999999999999
Q ss_pred CChhhHHHHHHHh--------CCcEEEEeccchHHHHHHhhhh
Q psy2970 176 PNALDEKELIDRI--------MIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 176 ~~~~e~~~l~~~~--------~~~~~etSAk~~~~~~~~l~~i 210 (329)
.+....+++.+.+ ...++++||+++.+.++.+..+
T Consensus 123 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l 165 (168)
T cd04149 123 PDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 165 (168)
T ss_pred ccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHH
Confidence 7643333333332 2368999999987777776554
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >KOG0079|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-27 Score=205.47 Aligned_cols=149 Identities=23% Similarity=0.457 Sum_probs=136.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
-+|.+++|++|||||+|+.+|..+.|...|..|+|.++. .++++.++++||||+|+|+|+.+...|+++.++++
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~-- 85 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVI-- 85 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEE--
Confidence 367899999999999999999999999999999998875 26788999999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||+++.+||.+...|++++.+. .+.+|-++||||.|.
T Consensus 86 ---------------------------------------vVYDVTn~ESF~Nv~rWLeei~~n--cdsv~~vLVGNK~d~ 124 (198)
T KOG0079|consen 86 ---------------------------------------VVYDVTNGESFNNVKRWLEEIRNN--CDSVPKVLVGNKNDD 124 (198)
T ss_pred ---------------------------------------EEEECcchhhhHhHHHHHHHHHhc--CccccceecccCCCC
Confidence 999999999999999999999776 458899999999999
Q ss_pred CCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 176 PNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 176 ~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
++. .++..++...++.+||||||...+.|+-++-+.
T Consensus 125 ~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit 165 (198)
T KOG0079|consen 125 PERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCIT 165 (198)
T ss_pred ccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHH
Confidence 875 678999999999999999999888888777665
|
|
| >KOG0087|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.5e-27 Score=212.30 Aligned_cols=148 Identities=24% Similarity=0.392 Sum_probs=134.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
...+||+++|++|||||-|+.||..++|..+..+|+|+++.. ++++.++.+||||+|||+|+.....|+++|.+.+
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl 91 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 91 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence 456899999999999999999999999998889999999875 6899999999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++...+|+++..|+.++.++.. ++++|+|||||+
T Consensus 92 -----------------------------------------lVYDITr~~Tfenv~rWL~ELRdhad-~nivimLvGNK~ 129 (222)
T KOG0087|consen 92 -----------------------------------------LVYDITRRQTFENVERWLKELRDHAD-SNIVIMLVGNKS 129 (222)
T ss_pred -----------------------------------------EEEechhHHHHHHHHHHHHHHHhcCC-CCeEEEEeecch
Confidence 99999999999999999999998754 699999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHh
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFL 207 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l 207 (329)
||... ++++.++++.++.|+||||....+++..+
T Consensus 130 DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF 168 (222)
T KOG0087|consen 130 DLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAF 168 (222)
T ss_pred hhhhccccchhhhHhHHHhcCceEEEecccccccHHHHH
Confidence 99763 78999999999999999999944444433
|
|
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-26 Score=197.68 Aligned_cols=148 Identities=21% Similarity=0.359 Sum_probs=128.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--E--eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~--i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+||+++|++|||||||++++..+++.+.+.||++.++. . +++..+.+++|||+|++++..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i--- 77 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIF--- 77 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEE---
Confidence 58999999999999999999999998888999997764 2 3455688999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+.+..|+.++.+.. ..++|+++||||.|+.
T Consensus 78 --------------------------------------~v~d~~~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~ 118 (161)
T cd04117 78 --------------------------------------LVYDISSERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEE 118 (161)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccc
Confidence 9999999999999999998886542 3579999999999996
Q ss_pred Ch-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 177 NA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 177 ~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+. .++..+++.++++|+|+||+++.+.++.++.+
T Consensus 119 ~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l 157 (161)
T cd04117 119 QKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRL 157 (161)
T ss_pred cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 43 56888999999999999999977777766554
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-26 Score=197.04 Aligned_cols=149 Identities=21% Similarity=0.418 Sum_probs=129.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--E--eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~--i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+||+++|++|||||||++++.++++...+.||++.++. . .+++.+.+++|||||++++..++..+++++++++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l--- 78 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI--- 78 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEE---
Confidence 79999999999999999999999998888999986653 2 2456689999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+.+..|+.++.+. ...++|+++||||+|+.
T Consensus 79 --------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl~ 119 (165)
T cd01865 79 --------------------------------------LMYDITNEESFNAVQDWSTQIKTY-SWDNAQVILVGNKCDME 119 (165)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHh-CCCCCCEEEEEECcccC
Confidence 999999999999999999888553 23578999999999996
Q ss_pred Ch-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 177 NA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 177 ~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+. .+++++++.++++++++||+++.+.+++++.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 159 (165)
T cd01865 120 DERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLV 159 (165)
T ss_pred cccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 53 456778888999999999999888888776653
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-26 Score=193.91 Aligned_cols=150 Identities=21% Similarity=0.304 Sum_probs=130.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
.+||+++|++|||||||++++.++.+...+.||++..+.. +++..+.+++|||||++++..++..+++++|+++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i--- 78 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFL--- 78 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEE---
Confidence 5899999999999999999999998888888888865543 5666788999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+.+..|+.++.+.....++|+++|+||+|+.
T Consensus 79 --------------------------------------lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~ 120 (164)
T cd04145 79 --------------------------------------LVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE 120 (164)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccc
Confidence 999999999999999999988775445689999999999996
Q ss_pred Ch-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 177 NA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 177 ~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
.. .+..++++.++.+++++||+++.+.+++++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 159 (164)
T cd04145 121 HQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL 159 (164)
T ss_pred ccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence 53 45677888889999999999977777777654
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-26 Score=195.09 Aligned_cols=149 Identities=22% Similarity=0.317 Sum_probs=129.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEeecc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~ 97 (329)
+||+++|++|||||||++++.++.+...+.||++..+.. ++++.+.+++|||||++++..++..+++.+++++
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i---- 76 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFL---- 76 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEE----
Confidence 489999999999999999999999888888888755543 4566789999999999999999999999999999
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN 177 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~ 177 (329)
+|||++++++|+++..|+..+.+.....++|+++||||+|+.+
T Consensus 77 -------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~ 119 (164)
T smart00173 77 -------------------------------------LVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES 119 (164)
T ss_pred -------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 9999999999999999988887655556899999999999975
Q ss_pred h-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 178 A-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 178 ~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
. .++++++++++.+++++||+++.+.+++++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 157 (164)
T smart00173 120 ERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDL 157 (164)
T ss_pred cceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHH
Confidence 3 45677888899999999999977777777655
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-26 Score=199.04 Aligned_cols=150 Identities=24% Similarity=0.468 Sum_probs=129.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
.||+++|++|||||||++++.++.|...|.||++.++.. +++..+.+++|||||++++..++..+++++|+++
T Consensus 1 ~ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i--- 77 (170)
T cd04108 1 SKVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAII--- 77 (170)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEE---
Confidence 389999999999999999999999998999999977642 3566788999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++++.+..|+.++.+.....++|+++||||+|+.
T Consensus 78 --------------------------------------lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~ 119 (170)
T cd04108 78 --------------------------------------IVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLS 119 (170)
T ss_pred --------------------------------------EEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcC
Confidence 999999999999999999998765444568899999999996
Q ss_pred Ch-------hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 177 NA-------LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 177 ~~-------~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+. .++..++++++.+++++||+++.++++++..+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 120 SPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred ccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 43 234577888899999999999777777776553
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-26 Score=197.27 Aligned_cols=148 Identities=30% Similarity=0.606 Sum_probs=126.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceee
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYI 100 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~ 100 (329)
+||+++|.+|||||||++++..+.+. .+.||+|.++..+..+.+.+.+|||||++++..++..+++++|+++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i------- 72 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI------- 72 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEE-------
Confidence 58999999999999999999888886 5789999888777778899999999999999999999999999999
Q ss_pred ehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhh
Q psy2970 101 VSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD 180 (329)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e 180 (329)
+|||++++++|++...++.+++......++|++|++||+|+.+...
T Consensus 73 ----------------------------------~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~ 118 (159)
T cd04150 73 ----------------------------------FVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS 118 (159)
T ss_pred ----------------------------------EEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC
Confidence 9999999999999999999887654456799999999999976544
Q ss_pred HHHHHHHhCC--------cEEEEeccchHHHHHHhhhh
Q psy2970 181 EKELIDRIMI--------DFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 181 ~~~l~~~~~~--------~~~etSAk~~~~~~~~l~~i 210 (329)
.+++.++++. .++++||+++.+.++.++.+
T Consensus 119 ~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l 156 (159)
T cd04150 119 AAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWL 156 (159)
T ss_pred HHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHH
Confidence 4444444432 47799999988788777654
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.5e-26 Score=192.57 Aligned_cols=148 Identities=20% Similarity=0.381 Sum_probs=129.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----ee--CceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----IT--KGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~--~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
+||+++|++|||||||++++.++.+...+.||++.++.. +. ...+.+++|||||++++..++..+++++++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v- 79 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACI- 79 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEE-
Confidence 589999999999999999999999988889999987743 23 56789999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++++++|+.+..|+..+... ..++|+++|+||+|
T Consensus 80 ----------------------------------------~v~d~~~~~s~~~l~~~~~~~~~~--~~~~p~iiv~nK~D 117 (162)
T cd04106 80 ----------------------------------------LVFSTTDRESFEAIESWKEKVEAE--CGDIPMVLVQTKID 117 (162)
T ss_pred ----------------------------------------EEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChh
Confidence 999999999999999998887553 35799999999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.+. .++++++++++++++++||+++..++++++.+.
T Consensus 118 l~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 118 LLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred cccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 8653 457788999999999999999777787776553
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-26 Score=209.93 Aligned_cols=149 Identities=17% Similarity=0.261 Sum_probs=124.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE---EeeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~---~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
++||+++|++|||||||++++..+.|...|.||++..+. .++++.+.+.+|||+|++.|..+++.+++++|+++
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~il--- 77 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVL--- 77 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEE---
Confidence 479999999999999999999999999899999998775 35677899999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+++..++...+.. ..+++|++|||||+|+.
T Consensus 78 --------------------------------------lvfdis~~~Sf~~i~~~w~~~~~~-~~~~~piiLVgnK~DL~ 118 (222)
T cd04173 78 --------------------------------------ICFDISRPETLDSVLKKWQGETQE-FCPNAKVVLVGCKLDMR 118 (222)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEEECcccc
Confidence 999999999999996544433333 24689999999999995
Q ss_pred Ch-----------------hhHHHHHHHhCC-cEEEEeccc-hH-HHHHHhhhh
Q psy2970 177 NA-----------------LDEKELIDRIMI-DFWITLTLL-IR-WCESFLHHF 210 (329)
Q Consensus 177 ~~-----------------~e~~~l~~~~~~-~~~etSAk~-~~-~~~~~l~~i 210 (329)
+. ++++++++++++ +|+||||++ .+ +.+.|...+
T Consensus 119 ~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~ 172 (222)
T cd04173 119 TDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVAT 172 (222)
T ss_pred cchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHH
Confidence 41 468889999995 899999998 43 444444433
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=8e-26 Score=198.72 Aligned_cols=148 Identities=18% Similarity=0.256 Sum_probs=126.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE---EeeCceEEEEEEecCCCccccchHHHHhhccceeEeecc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~---~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~ 97 (329)
+||+++|++|||||||+.++..+.+...+.||++..+. .++++.+.+.+|||+|++++..+++.+++++|++|
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i---- 77 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL---- 77 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEE----
Confidence 79999999999999999999999998889999876554 35667789999999999999999999999999999
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHH-HHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~-~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+++. .|+..+... ..++|++|||||+|+.
T Consensus 78 -------------------------------------lv~d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~ 118 (174)
T cd01871 78 -------------------------------------ICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLR 118 (174)
T ss_pred -------------------------------------EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhc
Confidence 999999999999996 476666543 3579999999999995
Q ss_pred Ch-----------------hhHHHHHHHhC-CcEEEEeccchHHHHHHhhhhc
Q psy2970 177 NA-----------------LDEKELIDRIM-IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 177 ~~-----------------~e~~~l~~~~~-~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+. .++++++++++ ++|+||||+++.+.+++++.+.
T Consensus 119 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~ 171 (174)
T cd01871 119 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAI 171 (174)
T ss_pred cChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHH
Confidence 32 35677899998 4999999999888888776553
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=193.29 Aligned_cols=150 Identities=23% Similarity=0.432 Sum_probs=129.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--E--eeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~--i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
-+||+++|++|||||||++++.++++...+.||++.++. . +++..+.+++|||||++++..++..+++++|+++
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii-- 79 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII-- 79 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEE--
Confidence 379999999999999999999999998888888887654 2 3556788999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++++|+++..|+.++.+.. ..+.|+++|+||+|+
T Consensus 80 ---------------------------------------~v~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl 119 (166)
T cd01869 80 ---------------------------------------IVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDL 119 (166)
T ss_pred ---------------------------------------EEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhc
Confidence 9999999999999999999886542 357899999999998
Q ss_pred CCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 176 PNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 176 ~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.+. .++.++++.++++++++||+++.+.++++..+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 160 (166)
T cd01869 120 TDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMA 160 (166)
T ss_pred ccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHH
Confidence 654 557888999999999999999777777776553
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=194.14 Aligned_cols=150 Identities=19% Similarity=0.275 Sum_probs=128.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
.+||+++|++|||||||++++.++.+...+.||++..+.. .+.+.+.+.+|||||++++..++..+++.+++++
T Consensus 1 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i--- 77 (165)
T cd04140 1 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFI--- 77 (165)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEE---
Confidence 3799999999999999999999999988888988866653 3566788999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC--cCCCCcEEEEEEcCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP--QLIGIPILVLGNKRD 174 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~--~~~~iPIiLVgNK~D 174 (329)
+|||++++++|+++..|+..+.+.. ...++|+++|+||+|
T Consensus 78 --------------------------------------lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~D 119 (165)
T cd04140 78 --------------------------------------LVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCD 119 (165)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcc
Confidence 9999999999999999887665432 236799999999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+.+. .++..+++.++++++|+||+++.+.+++++.+
T Consensus 120 l~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 120 ESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 9652 34566788889999999999988888877654
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-26 Score=193.10 Aligned_cols=146 Identities=26% Similarity=0.510 Sum_probs=129.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEeecc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~ 97 (329)
||+++|++|||||||++++.++.+.+.+.||+|.+... ++...+.+++||++|++++..++..+++++|+++
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i---- 76 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAII---- 76 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEE----
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccc----
Confidence 89999999999999999999999999999999766643 4577889999999999999999999999999999
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN 177 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~ 177 (329)
+|||+++++||+.+..|+..+..... .++|++|+|||.|+.+
T Consensus 77 -------------------------------------i~fd~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~ 118 (162)
T PF00071_consen 77 -------------------------------------IVFDVTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSD 118 (162)
T ss_dssp -------------------------------------EEEETTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGG
T ss_pred -------------------------------------cccccccccccccccccccccccccc-ccccceeeeccccccc
Confidence 99999999999999999999877533 4699999999999986
Q ss_pred h-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhh
Q psy2970 178 A-----LDEKELIDRIMIDFWITLTLLIRWCESFLHH 209 (329)
Q Consensus 178 ~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~ 209 (329)
. .++++++++++.+|+|+||++.....+.+..
T Consensus 119 ~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ 155 (162)
T PF00071_consen 119 EREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQE 155 (162)
T ss_dssp GSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHH
T ss_pred cccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHH
Confidence 3 5688999999999999999996666665544
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-26 Score=201.54 Aligned_cols=149 Identities=17% Similarity=0.247 Sum_probs=127.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEeecce
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~ 98 (329)
||+++|++|||||||+++|..+.+...+.||++..+.. +++..+.+++|||||+++++.++..+++.+|+++
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i----- 75 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFI----- 75 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEE-----
Confidence 68999999999999999999999988888998866543 4566788999999999999999999999999999
Q ss_pred eeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc--CCCCcEEEEEEcCCCC
Q psy2970 99 YIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ--LIGIPILVLGNKRDLP 176 (329)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~--~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+.+..|+..+.+... ..++|+++||||+|+.
T Consensus 76 ------------------------------------lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~ 119 (190)
T cd04144 76 ------------------------------------LVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119 (190)
T ss_pred ------------------------------------EEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc
Confidence 99999999999999999888765422 3579999999999996
Q ss_pred Ch-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 177 NA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 177 ~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+. .++.++++.++++++++||+++.+.++++..+.
T Consensus 120 ~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 120 YEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred ccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 42 456778888999999999999777777766553
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=194.26 Aligned_cols=149 Identities=24% Similarity=0.422 Sum_probs=129.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--E--eeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~--i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
.+||+++|++|||||||++++.++++...+.||++..+. . +++..+.+++|||||++++..++..+++++|+++
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i-- 80 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII-- 80 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE--
Confidence 489999999999999999999999999889999987654 2 3556688999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++++|+++..|+.++.+. ...++|+++||||+|+
T Consensus 81 ---------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl 120 (167)
T cd01867 81 ---------------------------------------LVYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDM 120 (167)
T ss_pred ---------------------------------------EEEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECccc
Confidence 999999999999999999988664 2367999999999999
Q ss_pred CCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 176 PNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 176 ~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
.+. .++.++++.++.+++++||++....+++++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 160 (167)
T cd01867 121 EEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL 160 (167)
T ss_pred ccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 753 45678888999999999999977777766554
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=206.95 Aligned_cols=148 Identities=24% Similarity=0.356 Sum_probs=129.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceee
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYI 100 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~ 100 (329)
+||+++|++|||||||++++..++|.. +.||++..+.....+.+.+.||||+|++.++.++..+++++|++|
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~I------- 72 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVI------- 72 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEE-------
Confidence 589999999999999999999999874 689999887666667789999999999999999999999999999
Q ss_pred ehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC---
Q psy2970 101 VSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN--- 177 (329)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~--- 177 (329)
+|||++++++|+++..|+..+.+. ...++|++|||||+|+.+
T Consensus 73 ----------------------------------lV~Dvt~~~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~ 117 (220)
T cd04126 73 ----------------------------------LTYDVSNVQSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGA 117 (220)
T ss_pred ----------------------------------EEEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccc
Confidence 999999999999999999888764 246799999999999965
Q ss_pred ---------------------hhhHHHHHHHhC--------------CcEEEEeccchHHHHHHhhhhc
Q psy2970 178 ---------------------ALDEKELIDRIM--------------IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 178 ---------------------~~e~~~l~~~~~--------------~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.++++.++++++ ++|+||||+++.+.++++..+.
T Consensus 118 ~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~ 186 (220)
T cd04126 118 LAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLF 186 (220)
T ss_pred cccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHH
Confidence 156888999887 6899999999777777776553
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=194.58 Aligned_cols=150 Identities=23% Similarity=0.405 Sum_probs=128.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCcccc-chHHHHhhccceeEe
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFR-SMWERYCRGVNAIVW 94 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~-~~~~~~~~~ad~iI~ 94 (329)
.+||+++|++|||||||++++..+.+...+.+|++.++.. +++..+.+++|||+|+++++ .++..+++++|+++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i- 80 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV- 80 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE-
Confidence 5899999999999999999999999988888999876643 45667899999999999886 57888999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++++++|+.+..|+.++.......++|+++|+||+|
T Consensus 81 ----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 120 (170)
T cd04115 81 ----------------------------------------FVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCD 120 (170)
T ss_pred ----------------------------------------EEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 9999999999999999998887765457899999999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccc---hHHHHHHhhhh
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLL---IRWCESFLHHF 210 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~---~~~~~~~l~~i 210 (329)
+.+. .+++++++..+++|+|+||++ ....++++..+
T Consensus 121 l~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l 164 (170)
T cd04115 121 LREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTL 164 (170)
T ss_pred chhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHH
Confidence 8653 457788888999999999998 55556555443
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.3e-26 Score=200.27 Aligned_cols=147 Identities=22% Similarity=0.316 Sum_probs=124.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEeecc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~ 97 (329)
.||+++|++|||||||++++.++.+...+.||++..+.. +++..+.+++|||+|++.+..++..+++++++++
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~i---- 76 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIM---- 76 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEE----
Confidence 389999999999999999999999988889999877653 4566789999999999999999999999999999
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHH-HHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~-~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+.+. .|+..+.+. ..++|++|||||+|+.
T Consensus 77 -------------------------------------lv~dv~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~ 117 (189)
T cd04134 77 -------------------------------------LCFSVDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLR 117 (189)
T ss_pred -------------------------------------EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhc
Confidence 999999999999986 577777654 3579999999999997
Q ss_pred Chh-----------------hHHHHHHHhC-CcEEEEeccchHHHHHHhhhh
Q psy2970 177 NAL-----------------DEKELIDRIM-IDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 177 ~~~-----------------e~~~l~~~~~-~~~~etSAk~~~~~~~~l~~i 210 (329)
+.. ++.+++++.+ ++|+||||+++.+.++.+..+
T Consensus 118 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l 169 (189)
T cd04134 118 EARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEA 169 (189)
T ss_pred cChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHH
Confidence 542 2456777777 789999999977777766554
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=199.71 Aligned_cols=147 Identities=23% Similarity=0.382 Sum_probs=126.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--E--eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~--i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+||+++|++|||||||++++..+.|...+.||+|.++. . +++..+.+++|||+|++++..++..+++++|+++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~ii--- 77 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAIL--- 77 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEE---
Confidence 58999999999999999999999998889999998764 2 3566789999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+++..|+.++.+.. ..++| ++||||+|+.
T Consensus 78 --------------------------------------lv~D~t~~~s~~~i~~~~~~~~~~~-~~~~p-ilVgnK~Dl~ 117 (182)
T cd04128 78 --------------------------------------FMFDLTRKSTLNSIKEWYRQARGFN-KTAIP-ILVGTKYDLF 117 (182)
T ss_pred --------------------------------------EEEECcCHHHHHHHHHHHHHHHHhC-CCCCE-EEEEEchhcc
Confidence 9999999999999999999887642 24567 5789999995
Q ss_pred Ch----------hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 177 NA----------LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 177 ~~----------~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
.+ .+++++++.++.+++++||+++.+.++++..+
T Consensus 118 ~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l 161 (182)
T cd04128 118 ADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIV 161 (182)
T ss_pred ccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 21 24567888899999999999977777777655
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-25 Score=192.28 Aligned_cols=151 Identities=21% Similarity=0.370 Sum_probs=129.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
..+||+++|++|||||||++++.++.+.+.+.+|++.++. .++++.+.+++|||||+++++.++..+++.+|+++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i- 82 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL- 82 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE-
Confidence 5689999999999999999999999998888899887653 25677889999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc---CCCCcEEEEEE
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ---LIGIPILVLGN 171 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~---~~~iPIiLVgN 171 (329)
+|||++++++|+.+..|..++.+... ..++|+++|||
T Consensus 83 ----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~n 122 (170)
T cd04116 83 ----------------------------------------LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGN 122 (170)
T ss_pred ----------------------------------------EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEE
Confidence 99999999999999999888876432 35789999999
Q ss_pred cCCCCCh----hhHHHHHHHhC-CcEEEEeccchHHHHHHhhhh
Q psy2970 172 KRDLPNA----LDEKELIDRIM-IDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 172 K~Dl~~~----~e~~~l~~~~~-~~~~etSAk~~~~~~~~l~~i 210 (329)
|+|+... .++++++++++ .+++++||+++...++.++.+
T Consensus 123 K~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~ 166 (170)
T cd04116 123 KNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEA 166 (170)
T ss_pred CccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHH
Confidence 9999642 56788888888 479999999977677666544
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=203.03 Aligned_cols=150 Identities=19% Similarity=0.327 Sum_probs=129.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE--e--e-CceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK--I--T-KGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~--i--~-~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
+||+++|++|||||||+++|.++.+...+.||++.++.. + + ...+.++||||+|++.+..++..+++++|+++
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~ii-- 78 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVF-- 78 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEE--
Confidence 589999999999999999999999998999999977642 2 2 34689999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc--CCCCcEEEEEEcC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ--LIGIPILVLGNKR 173 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~--~~~iPIiLVgNK~ 173 (329)
+|||++++++|+.+..|+..+.+... ..++|+++||||+
T Consensus 79 ---------------------------------------lV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~ 119 (215)
T cd04109 79 ---------------------------------------LVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKT 119 (215)
T ss_pred ---------------------------------------EEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECc
Confidence 99999999999999999888876432 2467899999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.+. .+++++++.++++++++||+++.+++++++.+.
T Consensus 120 DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~ 162 (215)
T cd04109 120 DLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLA 162 (215)
T ss_pred ccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 99743 457789999999999999999777777776553
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-25 Score=195.91 Aligned_cols=148 Identities=18% Similarity=0.287 Sum_probs=125.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE-e--e-CceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK-I--T-KGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~-i--~-~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+||+++|++|||||||++++.++.+...+.||++..+.. + . +..+.+.+|||||++++..++..+++++|+++
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii--- 77 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLL--- 77 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEE---
Confidence 589999999999999999999999988899999877643 2 2 55788999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHH-HHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRN-ELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~-~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++++|+++.. |+..+... ..++|+++||||+|+
T Consensus 78 --------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl 117 (187)
T cd04132 78 --------------------------------------ICYAVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDL 117 (187)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhh
Confidence 9999999999999975 66666443 357999999999998
Q ss_pred CC---------hhhHHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 176 PN---------ALDEKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 176 ~~---------~~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
.. ..+++++++.++. +++++||+++.+.+++++.+.
T Consensus 118 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~ 163 (187)
T cd04132 118 RKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAI 163 (187)
T ss_pred hhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHH
Confidence 65 2467788999998 899999999777777665553
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-25 Score=191.85 Aligned_cols=147 Identities=18% Similarity=0.291 Sum_probs=126.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+||+++|++|||||||++++..+.+.+.+.+|.+..+.. ++.+.+.+.+|||+|++++..++..+++++|+++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i--- 77 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACI--- 77 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEE---
Confidence 589999999999999999999999987777887765432 4667789999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++.+++.+..|+..+.+. ..++|+++|+||+|+.
T Consensus 78 --------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 78 --------------------------------------LVFDVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLD 117 (161)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCc
Confidence 999999999999999999888654 3578999999999986
Q ss_pred Ch--hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 177 NA--LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 177 ~~--~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
.. .+..++++..+++++++||+++.+.+++++.+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 153 (161)
T cd04124 118 PSVTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDA 153 (161)
T ss_pred hhHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 54 34556777788999999999987777777655
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-25 Score=193.45 Aligned_cols=148 Identities=24% Similarity=0.401 Sum_probs=127.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEe----eCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i----~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+||+++|++|||||||++++..+.+...+.||++.++... +.+.+.+.+|||+|++.+..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i--- 77 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAI--- 77 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEE---
Confidence 5899999999999999999999998888899998877643 456789999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+.+..|+.++.+.. .++|+++||||+|+.
T Consensus 78 --------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~ 117 (166)
T cd00877 78 --------------------------------------IMFDVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIK 117 (166)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcc
Confidence 9999999999999999999987653 389999999999997
Q ss_pred Ch---hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 177 NA---LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 177 ~~---~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+. .+..++++..+++++|+||+++.+.+++++.+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~ 155 (166)
T cd00877 118 DRKVKAKQITFHRKKNLQYYEISAKSNYNFEKPFLWLA 155 (166)
T ss_pred cccCCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHH
Confidence 43 334556777788999999999878888776653
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-25 Score=195.10 Aligned_cols=144 Identities=29% Similarity=0.559 Sum_probs=125.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeee
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIV 101 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~ 101 (329)
+|+++|++|||||||++++.++.+...+.||+|.....++.+++.+.+|||||+++++.++..+++++|+++
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii-------- 72 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLI-------- 72 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEE--------
Confidence 489999999999999999999988888899999887778888999999999999999999999999999999
Q ss_pred hhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChh--
Q psy2970 102 SKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL-- 179 (329)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~-- 179 (329)
+|||.+++.+|+....|+.++.... .++|+++|+||+|+.++.
T Consensus 73 ---------------------------------~V~D~t~~~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~ 117 (164)
T cd04162 73 ---------------------------------FVVDSADSERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSV 117 (164)
T ss_pred ---------------------------------EEEECCCHHHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCH
Confidence 9999999999999999999887543 689999999999997653
Q ss_pred -------hHHHHHHHhCCcEEEEeccc------hHHHHHHhh
Q psy2970 180 -------DEKELIDRIMIDFWITLTLL------IRWCESFLH 208 (329)
Q Consensus 180 -------e~~~l~~~~~~~~~etSAk~------~~~~~~~l~ 208 (329)
+++.++++.++.+++|||++ ....++++.
T Consensus 118 ~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~ 159 (164)
T cd04162 118 QEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLS 159 (164)
T ss_pred HHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHH
Confidence 23455566678899999999 555555554
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-25 Score=202.23 Aligned_cols=151 Identities=21% Similarity=0.357 Sum_probs=130.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE--e---eCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK--I---TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~--i---~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
++||+++|++|||||||++++.++.+...+.||++.++.. + ++..+.+++|||+|++++..++..+++++|+++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii- 80 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL- 80 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE-
Confidence 5899999999999999999999999988888999877643 2 345689999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++++++|+++..|+.++.+.....++|++|||||+|
T Consensus 81 ----------------------------------------lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~D 120 (211)
T cd04111 81 ----------------------------------------LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCD 120 (211)
T ss_pred ----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccc
Confidence 9999999999999999999987764445688999999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.+. .+.+++++.++++++|+||+++.+.+++++.+.
T Consensus 121 l~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~ 162 (211)
T cd04111 121 LESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLT 162 (211)
T ss_pred cccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9653 567889999999999999999766777665553
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-25 Score=198.52 Aligned_cols=151 Identities=22% Similarity=0.395 Sum_probs=131.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
...+||+++|++|||||||++++.++.+...+.||++.++.. +++..+.+.+|||||++.++.++..+++++++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 356899999999999999999999999988889999876542 3456678999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++|+.+..|+..+... ...+|++|||||+
T Consensus 84 -----------------------------------------lv~D~~~~~s~~~~~~~~~~i~~~--~~~~piivVgNK~ 120 (199)
T cd04110 84 -----------------------------------------VVYDVTNGESFVNVKRWLQEIEQN--CDDVCKVLVGNKN 120 (199)
T ss_pred -----------------------------------------EEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECc
Confidence 999999999999999999988654 3578999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.+. .++.++++.++.+++++||+++.+++++++.+.
T Consensus 121 Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~ 163 (199)
T cd04110 121 DDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCIT 163 (199)
T ss_pred ccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHH
Confidence 99653 456778888899999999999878888776664
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-25 Score=203.64 Aligned_cols=150 Identities=22% Similarity=0.335 Sum_probs=129.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEe----eCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i----~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
...+||+++|++|||||||++++..+++...+.||+|.++... +.+.+.+.+|||+|++++..++..++++++++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 4679999999999999999999999999888999999877642 456789999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++|+.+..|+.++.+. ..++|++|||||+
T Consensus 91 -----------------------------------------lvfD~~~~~s~~~i~~w~~~i~~~--~~~~piilvgNK~ 127 (219)
T PLN03071 91 -----------------------------------------IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (219)
T ss_pred -----------------------------------------EEEeCCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEEch
Confidence 999999999999999999998765 3579999999999
Q ss_pred CCCCh---hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 174 DLPNA---LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 174 Dl~~~---~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|+.+. .+..+++++.+++|+||||+++.+.++.+..+
T Consensus 128 Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~l 167 (219)
T PLN03071 128 DVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (219)
T ss_pred hhhhccCCHHHHHHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence 99643 12226777788999999999976666666544
|
|
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-25 Score=189.54 Aligned_cols=149 Identities=23% Similarity=0.390 Sum_probs=128.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
.+||+++|++|||||||++++.++++...+.||++.++.. +++..+.+.+||+||++++..++..+++.+++++
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i-- 80 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGAL-- 80 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEE--
Confidence 4799999999999999999999999887888998876543 3455678999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++++|+.+..|+.++.+.. ..++|++||+||+|+
T Consensus 81 ---------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl 120 (165)
T cd01868 81 ---------------------------------------LVYDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDL 120 (165)
T ss_pred ---------------------------------------EEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccc
Confidence 9999999999999999999887653 346899999999999
Q ss_pred CCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 176 PNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 176 ~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
... .+.+.++++.+++++|+||+++.+.+++++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 160 (165)
T cd01868 121 RHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL 160 (165)
T ss_pred cccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 653 45677888888999999999987888877654
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-25 Score=195.29 Aligned_cols=149 Identities=22% Similarity=0.373 Sum_probs=127.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+||+++|++|||||||++++.++.+...+.||++.++. .++++.+.+++|||||++++..++..+++++|+++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ii--- 77 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYL--- 77 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEE---
Confidence 58999999999999999999999998778899986654 24566789999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+++..|+.++.... ..++|+++||||+|+.
T Consensus 78 --------------------------------------lv~d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~ 118 (188)
T cd04125 78 --------------------------------------LVYDVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLV 118 (188)
T ss_pred --------------------------------------EEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCc
Confidence 9999999999999999998886542 3468999999999997
Q ss_pred Ch-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 177 NA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 177 ~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+. .++..+++..+++++|+||++....++++..+.
T Consensus 119 ~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~ 158 (188)
T cd04125 119 NNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLV 158 (188)
T ss_pred ccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 43 456778888899999999999777776665543
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >KOG0081|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.1e-27 Score=205.50 Aligned_cols=164 Identities=24% Similarity=0.368 Sum_probs=138.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE--e-----------eCceEEEEEEecCCCccccchHHHHhh
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK--I-----------TKGNVTIKVWDIGGQPRFRSMWERYCR 87 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~--i-----------~~~~~~l~I~DtpG~e~~~~~~~~~~~ 87 (329)
+|.+.+|++||||||++.+++.++|.++.++|+|++++. + ....+.+++|||+|||+|+++.-.+++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR 89 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR 89 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence 688899999999999999999999999999999998874 1 234577999999999999999999999
Q ss_pred ccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEE
Q psy2970 88 GVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPIL 167 (329)
Q Consensus 88 ~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIi 167 (329)
+|-+++ ++||+++..||.++++|+.++.-+....++.|+
T Consensus 90 DAMGFl-----------------------------------------LiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDiv 128 (219)
T KOG0081|consen 90 DAMGFL-----------------------------------------LIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIV 128 (219)
T ss_pred hhccce-----------------------------------------EEEeccchHHHHHHHHHHHHHHHhhccCCCCEE
Confidence 999999 999999999999999999999888777888999
Q ss_pred EEEEcCCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHH----hhhhcCCCchhhhcCCcch
Q psy2970 168 VLGNKRDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESF----LHHFGSHPNWAVKWHTLPK 225 (329)
Q Consensus 168 LVgNK~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~----l~~i~~~~~~~~~~~~~~~ 225 (329)
++|||+||++. +++.++++++++|||||||-++.+.++. +..+...++..+....+|.
T Consensus 129 lcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv~kave~LldlvM~Rie~~v~~s~~p~ 195 (219)
T KOG0081|consen 129 LCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNVEKAVELLLDLVMKRIEQCVEKSEIPL 195 (219)
T ss_pred EEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCHHHHHHHHHHHHHHHHHHHHhhcccch
Confidence 99999999875 5688999999999999999995444443 3333333444444444443
|
|
| >KOG0093|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.3e-26 Score=195.37 Aligned_cols=146 Identities=21% Similarity=0.442 Sum_probs=130.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE--e--eCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK--I--TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~--i--~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
.+|++++|+..||||||+.++.++.|...+..|+|++++- + ..+.++++||||+|+|+++.+.-.++++++++|
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi-- 98 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI-- 98 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE--
Confidence 4699999999999999999999999999999999998763 2 356689999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
++||++|.+||..+..|...+... ...++|||+||||||+
T Consensus 99 ---------------------------------------LmyDitNeeSf~svqdw~tqIkty-sw~naqvilvgnKCDm 138 (193)
T KOG0093|consen 99 ---------------------------------------LMYDITNEESFNSVQDWITQIKTY-SWDNAQVILVGNKCDM 138 (193)
T ss_pred ---------------------------------------EEEecCCHHHHHHHHHHHHHheee-eccCceEEEEecccCC
Confidence 999999999999999999888554 4579999999999999
Q ss_pred CCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHh
Q psy2970 176 PNA-----LDEKELIDRIMIDFWITLTLLIRWCESFL 207 (329)
Q Consensus 176 ~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l 207 (329)
.++ +.+..+++++|.+|||+|||...+.+..+
T Consensus 139 d~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~F 175 (193)
T KOG0093|consen 139 DSERVISHERGRQLADQLGFEFFETSAKENINVKQVF 175 (193)
T ss_pred ccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHH
Confidence 887 56889999999999999999944444433
|
|
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.1e-25 Score=192.60 Aligned_cols=158 Identities=28% Similarity=0.477 Sum_probs=133.0
Q ss_pred HHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccce
Q psy2970 12 FKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNA 91 (329)
Q Consensus 12 ~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~ 91 (329)
++..+.++.+||+++|++|||||||++++..+.+.. +.||++.++..+..+...+.+|||||++.+...+..+++++|+
T Consensus 7 ~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 85 (174)
T cd04153 7 WSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDA 85 (174)
T ss_pred HHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCE
Confidence 344445578999999999999999999999988764 6889998888877788999999999999999999999999999
Q ss_pred eEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEE
Q psy2970 92 IVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGN 171 (329)
Q Consensus 92 iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgN 171 (329)
++ +|+|+++++++.....++.++++.....++|+++++|
T Consensus 86 vi-----------------------------------------~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~N 124 (174)
T cd04153 86 VI-----------------------------------------LVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLAN 124 (174)
T ss_pred EE-----------------------------------------EEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEE
Confidence 99 9999999999999988888887765556799999999
Q ss_pred cCCCCChhhHHHHHHHhC--------CcEEEEeccchHHHHHHhhhhc
Q psy2970 172 KRDLPNALDEKELIDRIM--------IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 172 K~Dl~~~~e~~~l~~~~~--------~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+|+.+..+.+++.+.++ ++++++||+++.++++.++.+.
T Consensus 125 K~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~ 172 (174)
T cd04153 125 KQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIA 172 (174)
T ss_pred CCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHh
Confidence 999986544444444443 4689999999888888877653
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.7e-25 Score=190.15 Aligned_cols=150 Identities=17% Similarity=0.291 Sum_probs=128.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
++||+++|++|||||||++++.++.+...+.||++..+.+ +++..+.+++|||||++++..+++.+++.+++++
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~v--- 77 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFL--- 77 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEE---
Confidence 4799999999999999999999999988888998866543 4566789999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++++....|...+.+.....++|+++++||.|+.
T Consensus 78 --------------------------------------lv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~ 119 (168)
T cd04177 78 --------------------------------------LVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLE 119 (168)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcc
Confidence 999999999999999998888765445689999999999996
Q ss_pred Ch-----hhHHHHHHHhC-CcEEEEeccchHHHHHHhhhh
Q psy2970 177 NA-----LDEKELIDRIM-IDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 177 ~~-----~e~~~l~~~~~-~~~~etSAk~~~~~~~~l~~i 210 (329)
+. .+..+++++++ ++++++||+++.+.+++++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 120 DDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred ccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence 53 34566778888 899999999976666666554
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >KOG0095|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.6e-26 Score=195.91 Aligned_cols=150 Identities=22% Similarity=0.353 Sum_probs=131.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
--+||+++|..|||||+|+++|+.+-|++....|+|+++. +++++.++++||||+|||+|++..++|++.|+++|
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahali- 84 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALI- 84 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEE-
Confidence 3589999999999999999999999999999999998875 46889999999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++.+.+|+-+.+|+.++-+.. ..++-.++||||+|
T Consensus 85 ----------------------------------------lvydiscqpsfdclpewlreie~ya-n~kvlkilvgnk~d 123 (213)
T KOG0095|consen 85 ----------------------------------------LVYDISCQPSFDCLPEWLREIEQYA-NNKVLKILVGNKID 123 (213)
T ss_pred ----------------------------------------EEEecccCcchhhhHHHHHHHHHHh-hcceEEEeeccccc
Confidence 9999999999999999999996653 45677799999999
Q ss_pred CCChhh-----HHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 175 LPNALD-----EKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 175 l~~~~e-----~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+.+..+ ++++++....-|+||||+...+.+.++..+
T Consensus 124 ~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~ 164 (213)
T KOG0095|consen 124 LADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDL 164 (213)
T ss_pred hhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHH
Confidence 988733 567777777789999999966666666444
|
|
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.8e-25 Score=187.24 Aligned_cols=149 Identities=31% Similarity=0.595 Sum_probs=124.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceee
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQF-SQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYI 100 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~-~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~ 100 (329)
+|+++|++|||||||++++.++.+ ...+.||+|.....+..+++.+.+|||||+++++.++..+++++|+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii------- 73 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGII------- 73 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEE-------
Confidence 589999999999999999998763 567789999877777778899999999999999999999999999999
Q ss_pred ehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc--CCCCcEEEEEEcCCCCCh
Q psy2970 101 VSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ--LIGIPILVLGNKRDLPNA 178 (329)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~--~~~iPIiLVgNK~Dl~~~ 178 (329)
+|+|.+++.+++....++..+.+... ..++|+++|+||+|+.++
T Consensus 74 ----------------------------------~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 119 (162)
T cd04157 74 ----------------------------------FVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA 119 (162)
T ss_pred ----------------------------------EEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence 99999999999999888888876432 257999999999999875
Q ss_pred hhHHHHHHHhC--------CcEEEEeccchHHHHHHhhhhc
Q psy2970 179 LDEKELIDRIM--------IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 179 ~e~~~l~~~~~--------~~~~etSAk~~~~~~~~l~~i~ 211 (329)
...+++.+.++ .+++++||+++.+.+++++.+.
T Consensus 120 ~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 120 LTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred CCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 44444443332 3489999999888888876653
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-25 Score=190.28 Aligned_cols=145 Identities=19% Similarity=0.279 Sum_probs=123.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEeeccee
Q psy2970 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLY 99 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~ 99 (329)
|+++|++|||||||++++.++.+...+.||++..+.. +++..+.+.+|||||++.+..++..+++++|+++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i------ 74 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFL------ 74 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEE------
Confidence 5899999999999999999999988888988876643 4566788999999999999999999999999999
Q ss_pred eehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHH-HHHHHHhCCcCCCCcEEEEEEcCCCCCh
Q psy2970 100 IVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRN-ELHALIEKPQLIGIPILVLGNKRDLPNA 178 (329)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~-~l~~i~~~~~~~~iPIiLVgNK~Dl~~~ 178 (329)
+|||++++++|+++.. |+..+.+. .+++|++|||||+|+...
T Consensus 75 -----------------------------------lv~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~ 117 (174)
T smart00174 75 -----------------------------------ICFSVDSPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLRED 117 (174)
T ss_pred -----------------------------------EEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhC
Confidence 9999999999999964 77777553 358999999999999642
Q ss_pred -----------------hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhh
Q psy2970 179 -----------------LDEKELIDRIMI-DFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 179 -----------------~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i 210 (329)
.++++++++++. +++|+||+++.++++++..+
T Consensus 118 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l 167 (174)
T smart00174 118 KSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEA 167 (174)
T ss_pred hhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHH
Confidence 346678999986 89999999977777777654
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.2e-25 Score=187.00 Aligned_cols=149 Identities=23% Similarity=0.390 Sum_probs=129.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+||+++|++|||||||++++.++.+...+.+|.+..+. .+++..+.+++||+||++++..++..+++.+|+++
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i--- 77 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGAL--- 77 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEE---
Confidence 58999999999999999999999988888888886654 24566789999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+++..|+.++... ..+++|++||+||+|+.
T Consensus 78 --------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~ 118 (161)
T cd04113 78 --------------------------------------LVYDITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLA 118 (161)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcc
Confidence 999999999999999998887543 24689999999999996
Q ss_pred Ch-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 177 NA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 177 ~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+. .++..+++..+++++++||++..++++++..+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~ 158 (161)
T cd04113 119 DQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCA 158 (161)
T ss_pred hhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 53 457788899999999999999888888776553
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-25 Score=198.42 Aligned_cols=146 Identities=16% Similarity=0.220 Sum_probs=118.1
Q ss_pred ceEEEEEcCCCCCHHHHHH-HHHcC-----CCCCCCCCceee--eEE-----------EeeCceEEEEEEecCCCccccc
Q psy2970 20 EMELTLVGLQCSGKTTFVN-VIASG-----QFSQDMIPTVGF--NMR-----------KITKGNVTIKVWDIGGQPRFRS 80 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin-~l~~~-----~~~~~~~pTig~--~~~-----------~i~~~~~~l~I~DtpG~e~~~~ 80 (329)
.+||+++|++|||||||+. ++.++ .+...+.||++. .+. .++++.+.+++|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 5899999999999999996 55544 345678899962 221 3567789999999999985 2
Q ss_pred hHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHH-HHHHHHHhCC
Q psy2970 81 MWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASR-NELHALIEKP 159 (329)
Q Consensus 81 ~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~-~~l~~i~~~~ 159 (329)
+...+++++|+++ +|||+++++||+++. .|+.++...
T Consensus 80 ~~~~~~~~ad~ii-----------------------------------------lv~d~t~~~Sf~~~~~~w~~~i~~~- 117 (195)
T cd01873 80 DRRFAYGRSDVVL-----------------------------------------LCFSIASPNSLRNVKTMWYPEIRHF- 117 (195)
T ss_pred hhcccCCCCCEEE-----------------------------------------EEEECCChhHHHHHHHHHHHHHHHh-
Confidence 4566899999999 999999999999997 477776543
Q ss_pred cCCCCcEEEEEEcCCCCC------------------------hhhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 160 QLIGIPILVLGNKRDLPN------------------------ALDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 160 ~~~~iPIiLVgNK~Dl~~------------------------~~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
..++|++|||||+|+.+ ..++++++++++++|+||||+++.+.+++++.+
T Consensus 118 -~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~ 191 (195)
T cd01873 118 -CPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNA 191 (195)
T ss_pred -CCCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHH
Confidence 25789999999999863 257899999999999999999977777776554
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.3e-25 Score=187.68 Aligned_cols=151 Identities=23% Similarity=0.337 Sum_probs=128.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--Ee--eCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--KI--TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~i--~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
+.+||+++|++|||||||++++..+.+...+.+|.+.++. .+ ++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l- 80 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAI- 80 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE-
Confidence 4689999999999999999999999988878888876543 33 455578999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++++.+|+.+..|+.++.... ..++|+++|+||+|
T Consensus 81 ----------------------------------------lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D 119 (165)
T cd01864 81 ----------------------------------------IAYDITRRSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCD 119 (165)
T ss_pred ----------------------------------------EEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcc
Confidence 9999999999999999999886642 36799999999999
Q ss_pred CCCh-----hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 175 LPNA-----LDEKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.+. .++.+++++++. .++|+||+++.+.++++..+.
T Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~ 162 (165)
T cd01864 120 LEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMA 162 (165)
T ss_pred cccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHH
Confidence 9754 456788888886 689999999877777776553
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.5e-25 Score=190.95 Aligned_cols=152 Identities=27% Similarity=0.547 Sum_probs=127.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
..+++||+++|++|||||||++++.++.+ ..+.||+|.....+..+.+.+.+|||||++.++.++..+++++|+++
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i--- 86 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALI--- 86 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEE---
Confidence 45679999999999999999999998865 46778988777776666889999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++.+|++...++.+++......++|++||+||+|+.
T Consensus 87 --------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (173)
T cd04154 87 --------------------------------------WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLP 128 (173)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccc
Confidence 999999999999999999888765445789999999999997
Q ss_pred ChhhHHHHHHH--------hCCcEEEEeccchHHHHHHhhhh
Q psy2970 177 NALDEKELIDR--------IMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 177 ~~~e~~~l~~~--------~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+....+++.+. .+++++++||+++.+.+++++.+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 170 (173)
T cd04154 129 GALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWL 170 (173)
T ss_pred cCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHH
Confidence 65333333322 24689999999988888877654
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.3e-25 Score=189.90 Aligned_cols=144 Identities=18% Similarity=0.319 Sum_probs=118.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--EeeCceEEEEEEecCCCccccchHHHHhhccceeEeecce
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~ 98 (329)
+||+++|++|||||||++++..+.|.+.+.|+.+.... .++++.+.+.+|||+|++. ..+++.+|+++
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~i----- 70 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVI----- 70 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEE-----
Confidence 58999999999999999999999887766665443222 2456678899999999975 34678899999
Q ss_pred eeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC-
Q psy2970 99 YIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN- 177 (329)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~- 177 (329)
+|||+++++||+++..|+.++.......++|+++||||.|+..
T Consensus 71 ------------------------------------lv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~ 114 (158)
T cd04103 71 ------------------------------------FVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISES 114 (158)
T ss_pred ------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhc
Confidence 9999999999999999999998765557799999999999842
Q ss_pred -h-----hhHHHHHHHh-CCcEEEEeccchHHHHHHhhhh
Q psy2970 178 -A-----LDEKELIDRI-MIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 178 -~-----~e~~~l~~~~-~~~~~etSAk~~~~~~~~l~~i 210 (329)
. .++++++++. +++|+||||+++.+.++.+..+
T Consensus 115 ~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~ 154 (158)
T cd04103 115 NPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEA 154 (158)
T ss_pred CCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHH
Confidence 1 4567788877 4899999999977777777654
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=188.20 Aligned_cols=149 Identities=19% Similarity=0.293 Sum_probs=128.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
-+||+++|++|||||||++++.++++...+.+|.+.++. .+++....+.+|||||++++..+...+++.+|+++
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il-- 81 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL-- 81 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE--
Confidence 489999999999999999999999988777888877653 24566789999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++++++.+..|+.++.+.. .+++|++||+||.|+
T Consensus 82 ---------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl 121 (168)
T cd01866 82 ---------------------------------------LVYDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDL 121 (168)
T ss_pred ---------------------------------------EEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECccc
Confidence 9999999999999999999886643 367999999999999
Q ss_pred CCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 176 PNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 176 ~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
.+. .+++.++++.+++++|+||+...++++.+..+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~ 161 (168)
T cd01866 122 ESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT 161 (168)
T ss_pred ccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 742 45677888889999999999987777766544
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.1e-25 Score=190.23 Aligned_cols=147 Identities=27% Similarity=0.480 Sum_probs=124.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeee
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIV 101 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~ 101 (329)
||+++|++|||||||++++.++.+. .+.||++.++..++.+++.+++|||||++.++.++..+++++|+++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii-------- 71 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVV-------- 71 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEE--------
Confidence 6899999999999999999998775 4789999888878888899999999999999999999999999999
Q ss_pred hhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChh--
Q psy2970 102 SKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL-- 179 (329)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~-- 179 (329)
+|+|.+++++|+++..|+.++++.....+.|++||+||+|+.+..
T Consensus 72 ---------------------------------~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~ 118 (169)
T cd04158 72 ---------------------------------FVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSV 118 (169)
T ss_pred ---------------------------------EEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCH
Confidence 999999999999999999999876555678999999999997653
Q ss_pred -hHHHHHHHhC------CcEEEEeccchHHHHHHhhhh
Q psy2970 180 -DEKELIDRIM------IDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 180 -e~~~l~~~~~------~~~~etSAk~~~~~~~~l~~i 210 (329)
+.+++++..+ ..++++||+++.++++.++.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l 156 (169)
T cd04158 119 EEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWL 156 (169)
T ss_pred HHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHH
Confidence 3333332211 268899999977777776554
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-24 Score=193.59 Aligned_cols=149 Identities=26% Similarity=0.410 Sum_probs=128.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
+||+++|++|||||||++++.++.+. ..+.+|++.++.. +++..+.+.||||||++++...+..+++++|+++
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i-- 78 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALL-- 78 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEE--
Confidence 58999999999999999999999885 4678888876643 4566789999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++++|+++..|+..+.+.. ..++|+++||||+|+
T Consensus 79 ---------------------------------------~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl 118 (191)
T cd04112 79 ---------------------------------------LLYDITNKASFDNIRAWLTEIKEYA-QEDVVIMLLGNKADM 118 (191)
T ss_pred ---------------------------------------EEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccc
Confidence 9999999999999999998887642 347899999999999
Q ss_pred CCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 176 PNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 176 ~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
... .+++.+++.++.+|+|+||+++.+.+.++..+.
T Consensus 119 ~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~ 159 (191)
T cd04112 119 SGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVA 159 (191)
T ss_pred hhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 632 567788899999999999999877888776654
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >KOG0086|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-25 Score=194.50 Aligned_cols=149 Identities=25% Similarity=0.404 Sum_probs=133.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+|++++|+.|.|||+|+.+|..++|..+...|+|+++.. +.++.++++||||+|||+|++..+.|+++|.+.+
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAl--- 86 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL--- 86 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceE---
Confidence 899999999999999999999999998889999998863 5688899999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+.+..|+..+... ..+++.|+++|||.||.
T Consensus 87 --------------------------------------LVYD~TsrdsfnaLtnWL~DaR~l-As~nIvviL~GnKkDL~ 127 (214)
T KOG0086|consen 87 --------------------------------------LVYDITSRDSFNALTNWLTDARTL-ASPNIVVILCGNKKDLD 127 (214)
T ss_pred --------------------------------------EEEeccchhhHHHHHHHHHHHHhh-CCCcEEEEEeCChhhcC
Confidence 999999999999999999988654 35788999999999998
Q ss_pred Ch-----hhHHHHHHHhCCcEEEEeccc-hHHHHHHhhhhc
Q psy2970 177 NA-----LDEKELIDRIMIDFWITLTLL-IRWCESFLHHFG 211 (329)
Q Consensus 177 ~~-----~e~~~l~~~~~~~~~etSAk~-~~~~~~~l~~i~ 211 (329)
++ .++.+++++..+.+.||||++ .|+.|.|+.-..
T Consensus 128 ~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~ 168 (214)
T KOG0086|consen 128 PEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCAR 168 (214)
T ss_pred hhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHH
Confidence 86 568889999999999999999 555566665444
|
|
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-24 Score=184.55 Aligned_cols=148 Identities=20% Similarity=0.339 Sum_probs=125.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCCceeeeEEE----e-eCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG--QFSQDMIPTVGFNMRK----I-TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~--~~~~~~~pTig~~~~~----i-~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
+||+++|++|||||||++++..+ .+.+.+.||+|.++.. + ++..+.+.+|||||++.+..++..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 6778889999877642 2 356789999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++|+.+..|+.++.... .++|+++|+||+
T Consensus 81 -----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~ 117 (164)
T cd04101 81 -----------------------------------------LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKM 117 (164)
T ss_pred -----------------------------------------EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECc
Confidence 9999999999999999998876642 579999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.+. .+++.+++.++++++++||+++..++++++.+.
T Consensus 118 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (164)
T cd04101 118 DLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLA 160 (164)
T ss_pred ccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHH
Confidence 99654 234567778889999999999888888776553
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >KOG0091|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-25 Score=195.04 Aligned_cols=152 Identities=22% Similarity=0.345 Sum_probs=133.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----e-eCceEEEEEEecCCCccccchHHHHhhcccee
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----I-TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAI 92 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i-~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~i 92 (329)
.-+++++++|++-||||+|++.|+.++|.+-..||+|+++.. + ++..+++++|||+|||+|++..++|+++.-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 457899999999999999999999999998889999998753 2 57789999999999999999999999999999
Q ss_pred EeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc-CCCCcEEEEEE
Q psy2970 93 VWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ-LIGIPILVLGN 171 (329)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~-~~~iPIiLVgN 171 (329)
+ +|||++|++||+.+..|+++..-... ..++-++|||.
T Consensus 86 l-----------------------------------------lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGh 124 (213)
T KOG0091|consen 86 L-----------------------------------------LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGH 124 (213)
T ss_pred E-----------------------------------------EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEecc
Confidence 9 99999999999999999999876655 34445688999
Q ss_pred cCCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 172 KRDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 172 K~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|+|+... +|++.+++..|+.|+||||+++.+.++.++.+
T Consensus 125 KsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~ml 168 (213)
T KOG0091|consen 125 KSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDML 168 (213)
T ss_pred ccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHH
Confidence 9999865 78999999999999999999966556555544
|
|
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-24 Score=190.20 Aligned_cols=148 Identities=22% Similarity=0.341 Sum_probs=126.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQ-DMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~-~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
+||+++|++|||||||++++..+.+.. .+.+|++..+. .+++..+.+.+|||+|++++..++..+++++|+++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~ii-- 78 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAI-- 78 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEE--
Confidence 589999999999999999999999874 68899987653 24666788999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++++|+++..|+..+... ..++|+++|+||+|+
T Consensus 79 ---------------------------------------lv~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl 117 (193)
T cd04118 79 ---------------------------------------VCYDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDL 117 (193)
T ss_pred ---------------------------------------EEEECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccc
Confidence 999999999999999998888654 347999999999998
Q ss_pred CCh---------hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 176 PNA---------LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 176 ~~~---------~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.+. .++++++++++.+++++||+++..++.+++.+.
T Consensus 118 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 162 (193)
T cd04118 118 IEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVA 162 (193)
T ss_pred cccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 542 246677888899999999999777777776654
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-24 Score=182.91 Aligned_cols=149 Identities=20% Similarity=0.367 Sum_probs=127.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+||+++|++|||||||++++.++++...+.|+.+.++.. +++..+.+++|||||+++++.++..+++++|+++
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii--- 77 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAV--- 77 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE---
Confidence 489999999999999999999999887788888876543 3455678999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+.+..|+..+..... .++|+++++||+|+.
T Consensus 78 --------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~ 118 (161)
T cd01861 78 --------------------------------------VVYDITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLS 118 (161)
T ss_pred --------------------------------------EEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhcc
Confidence 99999999999999999998866432 379999999999994
Q ss_pred Ch-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 177 NA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 177 ~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+. .+...+++..+++++++||++..+.++++..+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 158 (161)
T cd01861 119 DKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIA 158 (161)
T ss_pred ccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHH
Confidence 32 456778888899999999999888888876653
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-24 Score=182.79 Aligned_cols=149 Identities=21% Similarity=0.362 Sum_probs=129.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+||+++|++|||||||++++.++.+...+.||.+.++.. ++...+.+.+|||||++.+...+..+++.+|+++
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i--- 77 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVI--- 77 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEE---
Confidence 589999999999999999999998877778888876542 4556689999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||.+++++|+.+..|+..+.+.....++|+++|+||+|+.
T Consensus 78 --------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 78 --------------------------------------LVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE 119 (161)
T ss_pred --------------------------------------EEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc
Confidence 999999999999999998888776556789999999999997
Q ss_pred Ch----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 177 NA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 177 ~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
.. .+..+++++.+++++++||+++.+.+++++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~ 157 (161)
T cd01863 120 NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEEL 157 (161)
T ss_pred ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH
Confidence 32 56778888889999999999988888877654
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-24 Score=186.28 Aligned_cols=148 Identities=19% Similarity=0.260 Sum_probs=121.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE---EeeCceEEEEEEecCCCcc-ccchHHHHhhccceeEeecc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPR-FRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~---~i~~~~~~l~I~DtpG~e~-~~~~~~~~~~~ad~iI~~~~ 97 (329)
||+++|++|||||||++++..+.+...+.||++..+. .++++.+.+++|||||+++ .......+++.+|+++
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i---- 76 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFV---- 76 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEE----
Confidence 6899999999999999999998887778888754443 3567778999999999986 3456778899999999
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc-CCCCcEEEEEEcCCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ-LIGIPILVLGNKRDLP 176 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~-~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+.+..|+..+.+... ..++|+++||||+|+.
T Consensus 77 -------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 77 -------------------------------------LVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred -------------------------------------EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 99999999999999998887765432 4579999999999985
Q ss_pred Ch-----hhHHHHHHHhCCcEEEEeccch-HHHHHHhhhh
Q psy2970 177 NA-----LDEKELIDRIMIDFWITLTLLI-RWCESFLHHF 210 (329)
Q Consensus 177 ~~-----~e~~~l~~~~~~~~~etSAk~~-~~~~~~l~~i 210 (329)
+. .+++++++.++.+|+|+||+++ ++.+++++.+
T Consensus 120 ~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 120 HYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred HhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 43 4567889999999999999996 4666666554
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-24 Score=182.48 Aligned_cols=150 Identities=24% Similarity=0.405 Sum_probs=129.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
++||+++|++|||||||++++.++++...+.||.+..+. .++...+.+.+||+||++++...+..+++++|+++
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i-- 78 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAI-- 78 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEE--
Confidence 489999999999999999999999988777888886543 35667789999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|+|.+++++|+....|+..+..... .++|+++++||+|+
T Consensus 79 ---------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~ 118 (163)
T cd01860 79 ---------------------------------------VVYDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADL 118 (163)
T ss_pred ---------------------------------------EEEECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccc
Confidence 99999999999999999998876543 67999999999998
Q ss_pred CC-----hhhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 176 PN-----ALDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 176 ~~-----~~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.. ..+..+++++.+.+++++||+++.+.+++++.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd01860 119 ESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIA 159 (163)
T ss_pred cccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 73 2456778888899999999999877787776543
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-24 Score=187.81 Aligned_cols=147 Identities=16% Similarity=0.260 Sum_probs=124.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE---EeeCceEEEEEEecCCCccccchHHHHhhccceeEeecc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~---~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~ 97 (329)
+||+++|++|||||||++++.++.+...+.||....+. .+++..+.+++|||||++++..++..+++++|+++
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i---- 76 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFL---- 76 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEE----
Confidence 58999999999999999999999998888888755443 24566789999999999999999999999999999
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHH-HHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~-~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+.+. .|+..+... ..++|+++||||+|+.
T Consensus 77 -------------------------------------~v~d~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~ 117 (173)
T cd04130 77 -------------------------------------LCFSVVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLR 117 (173)
T ss_pred -------------------------------------EEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhc
Confidence 999999999999986 577666543 3579999999999986
Q ss_pred Ch-----------------hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhh
Q psy2970 177 NA-----------------LDEKELIDRIMI-DFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 177 ~~-----------------~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i 210 (329)
.. .++.+++++.+. +++|+||+++.+.+++++.+
T Consensus 118 ~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~ 169 (173)
T cd04130 118 TDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTA 169 (173)
T ss_pred cChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHH
Confidence 32 357788888887 89999999987788777554
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-24 Score=195.39 Aligned_cols=151 Identities=22% Similarity=0.364 Sum_probs=130.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
..+||+++|++|||||||+++|.++.+...+.||++.++.. +++..+.+++|||+|++++..++..+++.+++++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i- 89 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL- 89 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE-
Confidence 45899999999999999999999999987888999987642 4566789999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++++++|+.+..|+..+.+.. ..++|+++||||+|
T Consensus 90 ----------------------------------------lv~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~D 128 (216)
T PLN03110 90 ----------------------------------------LVYDITKRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSD 128 (216)
T ss_pred ----------------------------------------EEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChh
Confidence 9999999999999999998886642 35799999999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.+. +++..+++.++++++++||++..+.+++++.+.
T Consensus 129 l~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~ 170 (216)
T PLN03110 129 LNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTIL 170 (216)
T ss_pred cccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 8643 467788888999999999999777777666553
|
|
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-24 Score=187.81 Aligned_cols=150 Identities=13% Similarity=0.177 Sum_probs=127.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhcccee
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAI 92 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~i 92 (329)
++-+||+++|++|||||||++++.++.+. ..+.||++..+. .+++..+.+.+||++|++.+..++..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 45689999999999999999999999998 889999987653 2456668899999999999999999999999999
Q ss_pred EeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 93 VWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+ +|||++++++|+.+..|+..+.. ..++|+++|+||
T Consensus 82 l-----------------------------------------lv~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK 117 (169)
T cd01892 82 C-----------------------------------------LVYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAK 117 (169)
T ss_pred E-----------------------------------------EEEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEc
Confidence 9 99999999999999888876532 247999999999
Q ss_pred CCCCCh-----hhHHHHHHHhCCc-EEEEeccchHHHHHHhhhhc
Q psy2970 173 RDLPNA-----LDEKELIDRIMID-FWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 173 ~Dl~~~-----~e~~~l~~~~~~~-~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+.+. .+.+++++.++.+ ++++||+++.+++++++.+.
T Consensus 118 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~ 162 (169)
T cd01892 118 ADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLA 162 (169)
T ss_pred ccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHH
Confidence 999653 3567888998874 79999999888888776654
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-24 Score=184.20 Aligned_cols=148 Identities=34% Similarity=0.644 Sum_probs=123.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeee
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIV 101 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~ 101 (329)
||+++|++|||||||++++..+.+. .+.||++.++..++.+..++++|||||+++++.++..+++.+++++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii-------- 71 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAII-------- 71 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEE--------
Confidence 6899999999999999999888775 4678988888777778899999999999999999999999999999
Q ss_pred hhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhH
Q psy2970 102 SKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDE 181 (329)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~ 181 (329)
+|+|++++.++.....++..+++.....++|+++|+||+|+.++...
T Consensus 72 ---------------------------------~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~ 118 (158)
T cd04151 72 ---------------------------------YVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSE 118 (158)
T ss_pred ---------------------------------EEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCH
Confidence 99999999888887787777766544567999999999999765434
Q ss_pred HHHHHHhC--------CcEEEEeccchHHHHHHhhhhc
Q psy2970 182 KELIDRIM--------IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 182 ~~l~~~~~--------~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.++.+.++ .+++++||+++.+.+++++.+.
T Consensus 119 ~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 156 (158)
T cd04151 119 AEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLV 156 (158)
T ss_pred HHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHh
Confidence 44444443 3599999999888888876653
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-24 Score=181.12 Aligned_cols=149 Identities=19% Similarity=0.305 Sum_probs=129.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEeecc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~ 97 (329)
+||+++|++|||||||++++..+.+...+.+|++..+.+ ++++.+.+.+|||||++.+...+..+++.+++++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i---- 76 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFL---- 76 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEE----
Confidence 589999999999999999999999888888888765543 4567789999999999999999999999999999
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN 177 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~ 177 (329)
+|+|++++++|++...|+..+.......++|+++|+||+|+.+
T Consensus 77 -------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 77 -------------------------------------LVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED 119 (164)
T ss_pred -------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc
Confidence 9999999999999999999888765556899999999999976
Q ss_pred h-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 178 A-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 178 ~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
. .+...++++++++++++||+++.++++++..+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 157 (164)
T cd04139 120 KRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDL 157 (164)
T ss_pred ccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHH
Confidence 2 44567888889999999999988888877655
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-24 Score=195.39 Aligned_cols=143 Identities=22% Similarity=0.358 Sum_probs=123.9
Q ss_pred EcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeee
Q psy2970 26 VGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIV 101 (329)
Q Consensus 26 lG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~ 101 (329)
+|++|||||||++++..+.+...+.||+|.++.. ++.+.+.+.||||+|+++++.++..+++++++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~i-------- 72 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAI-------- 72 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEE--------
Confidence 6999999999999999999988889999987754 3567899999999999999999999999999999
Q ss_pred hhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh---
Q psy2970 102 SKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--- 178 (329)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~--- 178 (329)
+|||++++++|+.+..|+.++.+. ..++|++|||||+|+...
T Consensus 73 ---------------------------------lV~D~t~~~S~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~~~v~ 117 (200)
T smart00176 73 ---------------------------------IMFDVTARVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDVKDRKVK 117 (200)
T ss_pred ---------------------------------EEEECCChHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccCC
Confidence 999999999999999999988765 257999999999998643
Q ss_pred hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 179 LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 179 ~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.+...+++..++.|+||||+++.+.++.+..+.
T Consensus 118 ~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~ 150 (200)
T smart00176 118 AKSITFHRKKNLQYYDISAKSNYNFEKPFLWLA 150 (200)
T ss_pred HHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 234467788899999999999777777665553
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-24 Score=185.46 Aligned_cols=147 Identities=16% Similarity=0.228 Sum_probs=123.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE---EeeCceEEEEEEecCCCccccchHHHHhhccceeEeecc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~---~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~ 97 (329)
+||+++|++|||||||++++..+++...+.||++..+. .+++..+.+.+|||||++.+...+..+++++|+++
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i---- 76 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL---- 76 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEE----
Confidence 58999999999999999999999998788888875543 24566778999999999999999999999999999
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHH-HHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRN-ELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~-~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+++.. |+..+... ..++|+++||||+|+.
T Consensus 77 -------------------------------------lv~~~~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~ 117 (174)
T cd04135 77 -------------------------------------ICFSVVNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLR 117 (174)
T ss_pred -------------------------------------EEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhh
Confidence 9999999999999874 55555433 4689999999999985
Q ss_pred Ch-----------------hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhh
Q psy2970 177 NA-----------------LDEKELIDRIMI-DFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 177 ~~-----------------~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i 210 (329)
+. .+++.++++++. +|+|+||+++.+++++++.+
T Consensus 118 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~ 169 (174)
T cd04135 118 DDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEA 169 (174)
T ss_pred cChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHH
Confidence 42 346678888886 79999999988888887655
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-24 Score=181.10 Aligned_cols=149 Identities=24% Similarity=0.452 Sum_probs=128.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+||+++|++|||||||++++.++.+...+.+|++.++.. ++++.+.+.+||+||++++...+..+++++|+++
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i--- 77 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGAL--- 77 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEE---
Confidence 589999999999999999999999887888888876543 3455578999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++.+++.+..|+.++.... ..++|+++|+||+|+.
T Consensus 78 --------------------------------------lv~d~~~~~s~~~~~~~l~~~~~~~-~~~~pivvv~nK~D~~ 118 (164)
T smart00175 78 --------------------------------------LVYDITNRESFENLKNWLKELREYA-DPNVVIMLVGNKSDLE 118 (164)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcc
Confidence 9999999999999999988876643 2589999999999987
Q ss_pred Ch-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 177 NA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 177 ~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+. ..+++++++.+++++|+||++....+++++.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~ 158 (164)
T smart00175 119 DQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELA 158 (164)
T ss_pred cccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 52 457778888899999999999877787776654
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.4e-24 Score=186.76 Aligned_cols=163 Identities=29% Similarity=0.592 Sum_probs=132.2
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHH
Q psy2970 5 LNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWER 84 (329)
Q Consensus 5 ~~~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~ 84 (329)
+..+++-+ .+.+++.||+++|++|||||||++++.++.+. .+.||.+.....+..++..+.+||+||++.++..+..
T Consensus 6 ~~~~~~~~--~~~~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~ 82 (190)
T cd00879 6 FYNVLSSL--GLYNKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKD 82 (190)
T ss_pred HHHHHHHh--hcccCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHH
Confidence 34444433 33577899999999999999999999998874 5778888777777777789999999999999999999
Q ss_pred HhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCC
Q psy2970 85 YCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGI 164 (329)
Q Consensus 85 ~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~i 164 (329)
+++++++++ +|+|++++++++....++.++++.....+.
T Consensus 83 ~~~~ad~ii-----------------------------------------lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~ 121 (190)
T cd00879 83 YFPEVDGIV-----------------------------------------FLVDAADPERFQESKEELDSLLSDEELANV 121 (190)
T ss_pred HhccCCEEE-----------------------------------------EEEECCcHHHHHHHHHHHHHHHcCccccCC
Confidence 999999999 999999999999999999998876555779
Q ss_pred cEEEEEEcCCCCChhhHHHHHHHhC-------------------CcEEEEeccchHHHHHHhhhhc
Q psy2970 165 PILVLGNKRDLPNALDEKELIDRIM-------------------IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 165 PIiLVgNK~Dl~~~~e~~~l~~~~~-------------------~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+++++||+|+......+++.+.++ ..+++|||+++.+.++.+..+.
T Consensus 122 pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~ 187 (190)
T cd00879 122 PFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLS 187 (190)
T ss_pred CEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHH
Confidence 9999999999976544444443332 3589999999777777766543
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.7e-24 Score=192.97 Aligned_cols=150 Identities=17% Similarity=0.214 Sum_probs=119.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccch--------HHHHhhc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSM--------WERYCRG 88 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~--------~~~~~~~ 88 (329)
+||+++|++|||||||++++.++++...+.||++.++. .++++.+.+++|||||.+.+... ....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999999998888999885542 24566689999999997654221 2344678
Q ss_pred cceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC--cCCCCcE
Q psy2970 89 VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP--QLIGIPI 166 (329)
Q Consensus 89 ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~--~~~~iPI 166 (329)
+|+++ +|||++++++|+.+..|+.++.+.. ...++|+
T Consensus 81 ad~ii-----------------------------------------lv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~pi 119 (198)
T cd04142 81 SRAFI-----------------------------------------LVYDICSPDSFHYVKLLRQQILETRPAGNKEPPI 119 (198)
T ss_pred CCEEE-----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCE
Confidence 88888 9999999999999999998887653 2467999
Q ss_pred EEEEEcCCCCCh-----hhHHHHHH-HhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 167 LVLGNKRDLPNA-----LDEKELID-RIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 167 iLVgNK~Dl~~~-----~e~~~l~~-~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|||||+|+.+. .+++++++ ..+++|+||||+++.+++++++.+.
T Consensus 120 iivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~ 170 (198)
T cd04142 120 VVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELL 170 (198)
T ss_pred EEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 999999999653 33455543 5689999999999777777776553
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >KOG0395|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-24 Score=196.34 Aligned_cols=150 Identities=21% Similarity=0.328 Sum_probs=135.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
.++||+++|.+|||||+|+.+|..+.|...|.||++..+++ ++++.+.+.|+||+|++.+..+.+.+++.+++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~-- 79 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFL-- 79 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEE--
Confidence 57899999999999999999999999999999999987775 6788899999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+||+++|+.||+.+..++..+.+.....++|+++||||+|+
T Consensus 80 ---------------------------------------lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl 120 (196)
T KOG0395|consen 80 ---------------------------------------LVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDL 120 (196)
T ss_pred ---------------------------------------EEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccc
Confidence 99999999999999999999977666677999999999999
Q ss_pred CCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhh
Q psy2970 176 PNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHH 209 (329)
Q Consensus 176 ~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~ 209 (329)
... +++++++..++++|+|+||+.....++.+..
T Consensus 121 ~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~ 159 (196)
T KOG0395|consen 121 ERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYE 159 (196)
T ss_pred hhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHH
Confidence 873 6788999999999999999995444444433
|
|
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-23 Score=186.48 Aligned_cols=153 Identities=29% Similarity=0.558 Sum_probs=129.6
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 16 FWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 16 ~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
.+++++||+++|.+|||||||++++.++.+. .+.||.+.....+..+++++.+|||||++.++.++..+++++|+++
T Consensus 13 ~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii-- 89 (184)
T smart00178 13 LWNKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIV-- 89 (184)
T ss_pred cccccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEE--
Confidence 3578899999999999999999999998775 4567777776666667899999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|+|++++++++....++.++++.....++|+++|+||+|+
T Consensus 90 ---------------------------------------~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl 130 (184)
T smart00178 90 ---------------------------------------YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDA 130 (184)
T ss_pred ---------------------------------------EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccc
Confidence 99999999999999999998887655578999999999999
Q ss_pred CChhhHHHHHHHhCC---------------cEEEEeccchHHHHHHhhhh
Q psy2970 176 PNALDEKELIDRIMI---------------DFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 176 ~~~~e~~~l~~~~~~---------------~~~etSAk~~~~~~~~l~~i 210 (329)
+.....+++++.+++ .++++||+++.+.++.++-+
T Consensus 131 ~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl 180 (184)
T smart00178 131 PYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWL 180 (184)
T ss_pred cCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHH
Confidence 876566666666642 38999999987777766544
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-23 Score=180.39 Aligned_cols=150 Identities=23% Similarity=0.376 Sum_probs=126.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+||+++|++|||||||++++.++.+.+.+.+|++.++. .+.+..+.+.+||+||++.+..++..+++++|+++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i--- 77 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCV--- 77 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEE---
Confidence 58999999999999999999999988788888886653 24556788999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc---CCCCcEEEEEEcC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ---LIGIPILVLGNKR 173 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~---~~~iPIiLVgNK~ 173 (329)
++||+.++.++++...|..++..... ..++|+++|+||+
T Consensus 78 --------------------------------------~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 119 (172)
T cd01862 78 --------------------------------------LVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKI 119 (172)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECc
Confidence 99999999999999888877665432 3479999999999
Q ss_pred CCCC-----hhhHHHHHHHhC-CcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPN-----ALDEKELIDRIM-IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~-----~~e~~~l~~~~~-~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.. .++.+++++..+ .+++++||+++.+.+.+++.+.
T Consensus 120 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 163 (172)
T cd01862 120 DLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIA 163 (172)
T ss_pred ccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHH
Confidence 9973 245667778887 7999999999877777776553
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.7e-24 Score=191.14 Aligned_cols=150 Identities=18% Similarity=0.291 Sum_probs=128.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
..+||+++|++|||||||++++.++++...+.||++.++. .+++..+.+.+|||+|++.+..++..+++.+|+++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v- 83 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL- 83 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE-
Confidence 4689999999999999999999999988788889887653 34566788999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++++++|+.+..|+.++.... ..++|+++|+||+|
T Consensus 84 ----------------------------------------lv~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~D 122 (210)
T PLN03108 84 ----------------------------------------LVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCD 122 (210)
T ss_pred ----------------------------------------EEEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcc
Confidence 9999999999999999988876542 35799999999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+.+. .++++++++++++++|+||++...+++.+..+
T Consensus 123 l~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l 163 (210)
T PLN03108 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 163 (210)
T ss_pred CccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9753 56788999999999999999966666655433
|
|
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-23 Score=177.59 Aligned_cols=149 Identities=19% Similarity=0.335 Sum_probs=125.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+||+++|++|||||||++++.++.+.+.+.+|++..+.. ..+..+.+.+||+||++.+..++..+++++|+++
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i--- 77 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAI--- 77 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEE---
Confidence 589999999999999999999998877667777554432 3456678999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++++.+..|+.++..... .++|+++|+||+|+.
T Consensus 78 --------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~ 118 (162)
T cd04123 78 --------------------------------------LVYDITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLE 118 (162)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccc
Confidence 99999999999999999888866533 379999999999997
Q ss_pred Ch-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 177 NA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 177 ~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.. .+.+++++.++.+++++||++....+++++.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~ 158 (162)
T cd04123 119 RQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLA 158 (162)
T ss_pred cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 53 345678888899999999999888888776553
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-23 Score=188.73 Aligned_cols=153 Identities=18% Similarity=0.325 Sum_probs=126.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--E--eeCceEEEEEEecCCCccccchHHHHhhcccee
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAI 92 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~--i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~i 92 (329)
++..+||+++|++|||||||++++.++.+. .+.||++.++. . +++..+.+.+|||||++++..++..+++++|++
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 89 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGI 89 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 456799999999999999999999998874 56788887653 2 355678999999999999999999999999999
Q ss_pred EeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHh-CCcCCCCcEEEEEE
Q psy2970 93 VWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIE-KPQLIGIPILVLGN 171 (329)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~-~~~~~~iPIiLVgN 171 (329)
+ +|||++++++|+++..++...+. .....+.|+++|+|
T Consensus 90 v-----------------------------------------lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~N 128 (211)
T PLN03118 90 I-----------------------------------------LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGN 128 (211)
T ss_pred E-----------------------------------------EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 9 99999999999999875544443 22235689999999
Q ss_pred cCCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 172 KRDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 172 K~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+|+... .+..+++++.+++|+|+||++..++++++..+.
T Consensus 129 K~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 173 (211)
T PLN03118 129 KVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELA 173 (211)
T ss_pred CccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9999643 456678888899999999999777777776553
|
|
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-23 Score=190.12 Aligned_cols=138 Identities=20% Similarity=0.239 Sum_probs=119.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--E--e-----eCceEEEEEEecCCCccccchHHHHhhccce
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--K--I-----TKGNVTIKVWDIGGQPRFRSMWERYCRGVNA 91 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~--i-----~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~ 91 (329)
+||+++|++|||||||++++..+.|...+.||+|.++. . + +++.+.++||||+|+++++.++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 58999999999999999999999998889999996553 2 2 2457899999999999999999999999999
Q ss_pred eEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC------------
Q psy2970 92 IVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP------------ 159 (329)
Q Consensus 92 iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~------------ 159 (329)
+| +|||+++++||+++..|+.++.+..
T Consensus 81 iI-----------------------------------------lVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~ 119 (202)
T cd04102 81 II-----------------------------------------LVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGD 119 (202)
T ss_pred EE-----------------------------------------EEEECcChHHHHHHHHHHHHHHHhhcccccccccccc
Confidence 99 9999999999999999999987631
Q ss_pred ------cCCCCcEEEEEEcCCCCCh---------hhHHHHHHHhCCcEEEEeccc
Q psy2970 160 ------QLIGIPILVLGNKRDLPNA---------LDEKELIDRIMIDFWITLTLL 199 (329)
Q Consensus 160 ------~~~~iPIiLVgNK~Dl~~~---------~e~~~l~~~~~~~~~etSAk~ 199 (329)
...++|++|||||+|+.++ .....++++++++.++.+++.
T Consensus 120 ~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~ 174 (202)
T cd04102 120 YDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNAEEINLNCTN 174 (202)
T ss_pred ccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHHHhcCCceEEEecCC
Confidence 1247999999999999654 235578899999999998886
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-23 Score=179.26 Aligned_cols=148 Identities=29% Similarity=0.618 Sum_probs=122.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEee-CceEEEEEEecCCCccccchHHHHhhccceeEeecceee
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKIT-KGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYI 100 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~-~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~ 100 (329)
+|+++|++|||||||++++.++.+. .+.||++..+..+. .+.+.+.+|||||++.+...+..+++++|+++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv------- 72 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV-TTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLV------- 72 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc-cccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEE-------
Confidence 5899999999999999999999886 34788887776554 35689999999999999999999999999999
Q ss_pred ehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhh
Q psy2970 101 VSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD 180 (329)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e 180 (329)
+|+|.+++.+++....++.++++.....++|+++|+||+|+.....
T Consensus 73 ----------------------------------~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 118 (160)
T cd04156 73 ----------------------------------YVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALT 118 (160)
T ss_pred ----------------------------------EEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcC
Confidence 9999999999999999999988765556899999999999976433
Q ss_pred HHHHHHHh---------CCcEEEEeccchHHHHHHhhhhc
Q psy2970 181 EKELIDRI---------MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 181 ~~~l~~~~---------~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.+++.+.+ +.+++++||+++.+.+++++.+.
T Consensus 119 ~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~ 158 (160)
T cd04156 119 AEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLA 158 (160)
T ss_pred HHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHh
Confidence 33443332 34689999999888888876653
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-23 Score=178.55 Aligned_cols=148 Identities=33% Similarity=0.660 Sum_probs=127.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeee
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIV 101 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~ 101 (329)
||+++|.+|||||||++++.++++ ..+.+|++..+..+..++..+.+||+||++.+...+..+++.+|+++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i-------- 71 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGII-------- 71 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEE--------
Confidence 689999999999999999999885 45788999888888878899999999999999999999999999999
Q ss_pred hhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhH
Q psy2970 102 SKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDE 181 (329)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~ 181 (329)
+|||++++++++....++..+.......+.|+++|+||+|+......
T Consensus 72 ---------------------------------~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~ 118 (158)
T cd00878 72 ---------------------------------FVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSV 118 (158)
T ss_pred ---------------------------------EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCH
Confidence 99999999999999999998887655678999999999999876544
Q ss_pred HHHHHHhC--------CcEEEEeccchHHHHHHhhhhc
Q psy2970 182 KELIDRIM--------IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 182 ~~l~~~~~--------~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+++.++++ .+++++||+++.+.+++++.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~ 156 (158)
T cd00878 119 SELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLL 156 (158)
T ss_pred HHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHh
Confidence 44444433 4699999999888888877653
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-23 Score=181.94 Aligned_cols=149 Identities=21% Similarity=0.312 Sum_probs=123.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE---EeeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~---~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+.||+++|++|||||||++++.++.+...+.||++..+. .++++.+.+.+|||+|++++...+..+++++|+++
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i--- 77 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL--- 77 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEE---
Confidence 368999999999999999999999998888999886653 24567788999999999999888888889999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHH-HHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRN-ELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~-~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++++|+.+.. |+..+... ..++|+++|+||+|+
T Consensus 78 --------------------------------------~v~~~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl 117 (175)
T cd01870 78 --------------------------------------MCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDL 117 (175)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhc
Confidence 9999999999999865 65555443 357899999999998
Q ss_pred CCh-----------------hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 176 PNA-----------------LDEKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 176 ~~~-----------------~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
.+. .++++++++++. ++++|||+++.+.+++++.+.
T Consensus 118 ~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~ 171 (175)
T cd01870 118 RNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMAT 171 (175)
T ss_pred ccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHH
Confidence 642 345667777774 799999999888888776553
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-23 Score=175.13 Aligned_cols=149 Identities=66% Similarity=1.040 Sum_probs=127.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeee
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIV 101 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~ 101 (329)
.|+++|++|||||||++++.+.++...+.||++.++..++.+.+.+.+||+||++.++..+..+++.+|+++
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii-------- 72 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIV-------- 72 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEE--------
Confidence 489999999999999999999999888999999988887777799999999999999999999999999999
Q ss_pred hhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhH
Q psy2970 102 SKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDE 181 (329)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~ 181 (329)
+|+|++++.++.....++.++.......++|+++|+||+|+.+..+.
T Consensus 73 ---------------------------------~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~ 119 (159)
T cd04159 73 ---------------------------------YVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSV 119 (159)
T ss_pred ---------------------------------EEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCH
Confidence 99999999999999889988877655578999999999999776444
Q ss_pred HHHHHHh--------CCcEEEEeccchHHHHHHhhhhc
Q psy2970 182 KELIDRI--------MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 182 ~~l~~~~--------~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+++.+.+ ..+++++||+++...+++++.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 157 (159)
T cd04159 120 DELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLI 157 (159)
T ss_pred HHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHh
Confidence 4443333 25789999999888888776653
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-23 Score=182.73 Aligned_cols=137 Identities=31% Similarity=0.566 Sum_probs=117.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeee
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIV 101 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~ 101 (329)
+|+++|++|||||||++++.++ +...+.||+|.....++.+++.+++||+||++.++.++..+++++++++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii-------- 71 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLV-------- 71 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEE--------
Confidence 4899999999999999999977 6667889999887778888899999999999999999999999999999
Q ss_pred hhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhH
Q psy2970 102 SKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDE 181 (329)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~ 181 (329)
+|||.+++++++++..|+..+.+.....++|+++|+||+|+++....
T Consensus 72 ---------------------------------~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~ 118 (167)
T cd04161 72 ---------------------------------FVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLG 118 (167)
T ss_pred ---------------------------------EEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCH
Confidence 99999999999999999999987655568999999999999876432
Q ss_pred H---------HHHHHhC--CcEEEEeccch
Q psy2970 182 K---------ELIDRIM--IDFWITLTLLI 200 (329)
Q Consensus 182 ~---------~l~~~~~--~~~~etSAk~~ 200 (329)
. +++++.+ +.+++|||+++
T Consensus 119 ~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g 148 (167)
T cd04161 119 ADVIEYLSLEKLVNENKSLCHIEPCSAIEG 148 (167)
T ss_pred HHHHHhcCcccccCCCCceEEEEEeEceeC
Confidence 2 2332222 45778999995
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-23 Score=196.55 Aligned_cols=150 Identities=16% Similarity=0.238 Sum_probs=123.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE---EeeCceEEEEEEecCCCccccchHHHHhhccceeEeecc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~---~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~ 97 (329)
+||+++|++|||||||++++.++++...+.||++..+. .++++.+.++||||+|++.+..++..++..+|+++
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iI---- 76 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFI---- 76 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEE----
Confidence 58999999999999999999999998888899874332 34567789999999999999999888999999999
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC--------cCCCCcEEEE
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP--------QLIGIPILVL 169 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~--------~~~~iPIiLV 169 (329)
+|||++++++|+++..|+.++.+.. ...++|++||
T Consensus 77 -------------------------------------lVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIiv 119 (247)
T cd04143 77 -------------------------------------LVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVIC 119 (247)
T ss_pred -------------------------------------EEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEE
Confidence 9999999999999999999887542 2357999999
Q ss_pred EEcCCCCCh-----hhHHHHHHH-hCCcEEEEeccchHHHHHHhhhhc
Q psy2970 170 GNKRDLPNA-----LDEKELIDR-IMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 170 gNK~Dl~~~-----~e~~~l~~~-~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+||+|+... .+..++... .++.++++||+++.+++++++.+.
T Consensus 120 gNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~ 167 (247)
T cd04143 120 GNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALF 167 (247)
T ss_pred EECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999742 334444332 357899999999777777776654
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-23 Score=184.82 Aligned_cols=151 Identities=32% Similarity=0.636 Sum_probs=121.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEe-----eCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI-----TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i-----~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
+.+||+++|++|||||||++++..+.+.. +.||+|...... +...+.+.+|||||+++++.++..+++++|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVN-TVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCC-cCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 46899999999999999999999988764 468887665432 236789999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++++....++.++.......++|++||+||+
T Consensus 81 -----------------------------------------~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~ 119 (183)
T cd04152 81 -----------------------------------------FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQ 119 (183)
T ss_pred -----------------------------------------EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECc
Confidence 999999999999998888888765445679999999999
Q ss_pred CCCChh---hHHHHHH--Hh----CCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNAL---DEKELID--RI----MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~~---e~~~l~~--~~----~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.+.. +.+.+.. +. +.+++++||+++.+++++++.+.
T Consensus 120 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~ 166 (183)
T cd04152 120 DLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLY 166 (183)
T ss_pred CccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHH
Confidence 997542 2332221 11 24688999999888888776653
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-23 Score=182.01 Aligned_cols=150 Identities=17% Similarity=0.307 Sum_probs=127.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEeecc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~ 97 (329)
.||+++|++|||||||++++.++.+...+.||++..+.. .+...+.+.+|||||++++...+..++..+++++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i---- 77 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYI---- 77 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEE----
Confidence 689999999999999999999998877778887654332 3445678899999999999999999999999999
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN 177 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~ 177 (329)
++||+++..+++.+..++..+.+.....+.|+++|+||+|+..
T Consensus 78 -------------------------------------~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 120 (180)
T cd04137 78 -------------------------------------LVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHT 120 (180)
T ss_pred -------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhh
Confidence 9999999999999999999998865557889999999999974
Q ss_pred h-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 178 A-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 178 ~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
. .+..+++++++.+++++||++....++++..+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 159 (180)
T cd04137 121 QRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLI 159 (180)
T ss_pred cCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 2 345677888899999999999777777776653
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-23 Score=182.77 Aligned_cols=157 Identities=34% Similarity=0.680 Sum_probs=136.2
Q ss_pred HHHHhcCC-CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhc
Q psy2970 10 DWFKSLFW-KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRG 88 (329)
Q Consensus 10 ~~~~~~~~-~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ 88 (329)
+.+++++. +++.||+++|..||||||+++++..+++. .+.||+|.++..++.+++.+.+||++|+..++..|+.|+++
T Consensus 3 ~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~ 81 (175)
T PF00025_consen 3 SVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQN 81 (175)
T ss_dssp HHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTT
T ss_pred HHHHHhcccCcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccceeeeCcEEEEEEeccccccccccceeeccc
Confidence 44566654 88999999999999999999999987765 47899999999999999999999999999999999999999
Q ss_pred cceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEE
Q psy2970 89 VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILV 168 (329)
Q Consensus 89 ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiL 168 (329)
++++| ||+|.+|++.+.+....+.++++.....++|++|
T Consensus 82 ~~~iI-----------------------------------------fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLI 120 (175)
T PF00025_consen 82 ADGII-----------------------------------------FVVDSSDPERLQEAKEELKELLNDPELKDIPILI 120 (175)
T ss_dssp ESEEE-----------------------------------------EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEE
T ss_pred cceeE-----------------------------------------EEEecccceeecccccchhhhcchhhcccceEEE
Confidence 99999 9999999999999999999999987778999999
Q ss_pred EEEcCCCCChhhHHHHHHHhC---------CcEEEEeccchHHHHHHhh
Q psy2970 169 LGNKRDLPNALDEKELIDRIM---------IDFWITLTLLIRWCESFLH 208 (329)
Q Consensus 169 VgNK~Dl~~~~e~~~l~~~~~---------~~~~etSAk~~~~~~~~l~ 208 (329)
++||+|+++....+++.+.++ +..+.|||+++.+..+.++
T Consensus 121 l~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~ 169 (175)
T PF00025_consen 121 LANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLE 169 (175)
T ss_dssp EEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHH
T ss_pred EeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHH
Confidence 999999988755555554443 3488999999777666554
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-23 Score=178.23 Aligned_cols=148 Identities=32% Similarity=0.599 Sum_probs=122.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC------CCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ------FSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~------~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
+|+++|++|||||||++++.+.. ....+.||++.++..+..++..+.+|||||++.+..++..+++.+++++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v-- 78 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAII-- 78 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEE--
Confidence 58999999999999999997642 2345678988888888777899999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|+|.+++++++....++.++.+.....++|+++++||+|+
T Consensus 79 ---------------------------------------~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~ 119 (167)
T cd04160 79 ---------------------------------------YVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDL 119 (167)
T ss_pred ---------------------------------------EEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccc
Confidence 99999999999999999999887655578999999999999
Q ss_pred CChhhHH---HHHHH-------hCCcEEEEeccchHHHHHHhhhh
Q psy2970 176 PNALDEK---ELIDR-------IMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 176 ~~~~e~~---~l~~~-------~~~~~~etSAk~~~~~~~~l~~i 210 (329)
.+....+ ++.+. .+.+++++||+++.+.+++++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l 164 (167)
T cd04160 120 PDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWL 164 (167)
T ss_pred ccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHH
Confidence 7763322 22222 23579999999988888877654
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-23 Score=189.99 Aligned_cols=147 Identities=19% Similarity=0.210 Sum_probs=120.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCceeeeE--E--EeeCceEEEEEEecCCCccccchHHHHhh-ccceeEe
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVGFNM--R--KITKGNVTIKVWDIGGQPRFRSMWERYCR-GVNAIVW 94 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig~~~--~--~i~~~~~~l~I~DtpG~e~~~~~~~~~~~-~ad~iI~ 94 (329)
+||+++|++|||||||++++..+.+. ..+.||.+.++ . .+++....+.+|||||++ ......+++ ++|+++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~ii- 77 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFV- 77 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEE-
Confidence 58999999999999999999988886 67777775332 2 356677899999999998 223455666 899999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++++++|+.+..|+..+.+.....++|+++|+||+|
T Consensus 78 ----------------------------------------lV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~D 117 (221)
T cd04148 78 ----------------------------------------VVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSD 117 (221)
T ss_pred ----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChh
Confidence 9999999999999999998887754446899999999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+.+. .+++++++.++++++|+||+++.+++++++.+
T Consensus 118 l~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 118 LARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred ccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 9654 34667888889999999999977777777655
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.1e-23 Score=169.86 Aligned_cols=148 Identities=26% Similarity=0.461 Sum_probs=127.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+||+++|++|||||||++++.++++...+.+|.+..+.. .+.....+.+||+||++.+...+..+++++|+++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii--- 77 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAI--- 77 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEE---
Confidence 589999999999999999999999987778888877654 3446688999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|+|++++++++.+..|+..+.... ..+.|+++++||+|+.
T Consensus 78 --------------------------------------~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 78 --------------------------------------LVYDITNRESFENLDKWLKELKEYA-PENIPIILVGNKIDLE 118 (159)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEccccc
Confidence 9999999999999999988887653 2579999999999995
Q ss_pred --Ch---hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 177 --NA---LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 177 --~~---~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
.. .+..+++++.+.+++++||++...+++++..+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 157 (159)
T cd00154 119 DQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSL 157 (159)
T ss_pred ccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence 22 56777888889999999999987777777654
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >KOG0088|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-24 Score=189.07 Aligned_cols=150 Identities=22% Similarity=0.352 Sum_probs=130.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--E--eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~--i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
-.+||+++|.+.||||||+-++..++|..+..+|+...+. + +.+....++||||+|||+|+.+-+-|+++.++.+
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal- 90 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL- 90 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE-
Confidence 3689999999999999999999999998777777765443 3 4556678999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++|++||+.++.|..++..-. ...+.+++||||+|
T Consensus 91 ----------------------------------------LVyDITDrdSFqKVKnWV~Elr~ml-Gnei~l~IVGNKiD 129 (218)
T KOG0088|consen 91 ----------------------------------------LVYDITDRDSFQKVKNWVLELRTML-GNEIELLIVGNKID 129 (218)
T ss_pred ----------------------------------------EEEeccchHHHHHHHHHHHHHHHHh-CCeeEEEEecCccc
Confidence 9999999999999999999997643 24678899999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|.++ .+++.+++..|..|+||||+.....+++++.+
T Consensus 130 LEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~L 170 (218)
T KOG0088|consen 130 LEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESL 170 (218)
T ss_pred HHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHH
Confidence 9876 57889999999999999999966666666544
|
|
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.4e-23 Score=175.25 Aligned_cols=147 Identities=18% Similarity=0.317 Sum_probs=120.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE---EeeCceEEEEEEecCCCccccchHHHHhhccceeEeecc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~---~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~ 97 (329)
+||+++|++|||||||++++.++++...+.||+...+. ..++..+.+++|||||++.+......+++.+|+++
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i---- 76 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFL---- 76 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEE----
Confidence 58999999999999999999999987777787765443 24567789999999999988888888889999999
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHH-HHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRN-ELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~-~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++.+|..... |+..+... ..++|+++|+||+|+.
T Consensus 77 -------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~ 117 (171)
T cd00157 77 -------------------------------------ICFSVDSPSSFENVKTKWIPEIRHY--CPNVPIILVGTKIDLR 117 (171)
T ss_pred -------------------------------------EEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEccHHhh
Confidence 9999999999988765 44444433 2489999999999986
Q ss_pred Chh----------------hHHHHHHHhCC-cEEEEeccchHHHHHHhhhh
Q psy2970 177 NAL----------------DEKELIDRIMI-DFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 177 ~~~----------------e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i 210 (329)
+.. ++.+++..++. +++++||++....+++++.+
T Consensus 118 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 168 (171)
T cd00157 118 DDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEA 168 (171)
T ss_pred hchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHH
Confidence 543 34567777887 89999999988888877654
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.9e-23 Score=172.26 Aligned_cols=149 Identities=21% Similarity=0.308 Sum_probs=127.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEeecce
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~ 98 (329)
||+++|++|||||||++++.++.+...+.||.+..+.. +++..+.+++||+||++.+..++..+++++|+++
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i----- 75 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFI----- 75 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEE-----
Confidence 68999999999999999999988888888887744432 3445688999999999999999999999999999
Q ss_pred eeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh
Q psy2970 99 YIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA 178 (329)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~ 178 (329)
+|||++++++++++..++..+.+.....++|+++|+||+|+.+.
T Consensus 76 ------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 119 (160)
T cd00876 76 ------------------------------------LVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENE 119 (160)
T ss_pred ------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccccc
Confidence 99999999999999999998887644468999999999999763
Q ss_pred -----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 179 -----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 179 -----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.++.+++++++.+++++||++....+++++.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~ 157 (160)
T cd00876 120 RQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLV 157 (160)
T ss_pred ceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Confidence 457778888889999999999877777776653
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >KOG0083|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-24 Score=186.39 Aligned_cols=143 Identities=29% Similarity=0.501 Sum_probs=126.0
Q ss_pred EEEcCCCCCHHHHHHHHHcCCCC-CCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEeecce
Q psy2970 24 TLVGLQCSGKTTFVNVIASGQFS-QDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98 (329)
Q Consensus 24 lllG~~gvGKSSLin~l~~~~~~-~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~ 98 (329)
+++|++++|||+|+-++..+-|. ...++|+|++++. ++++.+++++|||+|||+|++....|++++|+.+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~all----- 75 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALL----- 75 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceee-----
Confidence 37899999999999999988874 5678999999985 5788899999999999999999999999999999
Q ss_pred eeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh
Q psy2970 99 YIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA 178 (329)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~ 178 (329)
++||++|+.||++...|+.++-+.. ...+.+.++|||+|+..+
T Consensus 76 ------------------------------------llydiankasfdn~~~wlsei~ey~-k~~v~l~llgnk~d~a~e 118 (192)
T KOG0083|consen 76 ------------------------------------LLYDIANKASFDNCQAWLSEIHEYA-KEAVALMLLGNKCDLAHE 118 (192)
T ss_pred ------------------------------------eeeecccchhHHHHHHHHHHHHHHH-HhhHhHhhhccccccchh
Confidence 9999999999999999999997653 356788999999999654
Q ss_pred -----hhHHHHHHHhCCcEEEEeccc-hHHHHHHhh
Q psy2970 179 -----LDEKELIDRIMIDFWITLTLL-IRWCESFLH 208 (329)
Q Consensus 179 -----~e~~~l~~~~~~~~~etSAk~-~~~~~~~l~ 208 (329)
++++.+++.+++||.|||||+ -|+.-+|+.
T Consensus 119 r~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ 154 (192)
T KOG0083|consen 119 RAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLA 154 (192)
T ss_pred hccccchHHHHHHHHCCCceeccccccccHhHHHHH
Confidence 789999999999999999999 444445543
|
|
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=172.49 Aligned_cols=152 Identities=22% Similarity=0.347 Sum_probs=126.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
+..+||+++|++|||||||++++.++.+.+.+.+|++.++. .+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 45699999999999999999999988888778888875543 24566688999999999999998899999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++++.+..|+.++... ...++|+++|+||+
T Consensus 85 -----------------------------------------~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~ 122 (169)
T cd04114 85 -----------------------------------------LTYDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKI 122 (169)
T ss_pred -----------------------------------------EEEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECc
Confidence 999999999999998888777543 23579999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.+. ...+.+.+....+++++||+++.+.++++..+.
T Consensus 123 D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 165 (169)
T cd04114 123 DLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLA 165 (169)
T ss_pred ccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHH
Confidence 99754 224566666678899999999888888877654
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-22 Score=172.67 Aligned_cols=152 Identities=31% Similarity=0.589 Sum_probs=130.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~ 97 (329)
.++++|+++|++|||||||++++.+..+. .+.||.|.+...+...+..+.+||+||+..+...+..+++.+++++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii---- 86 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLI---- 86 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEE----
Confidence 46799999999999999999999988764 4678888877777767789999999999988888888999999999
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN 177 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~ 177 (329)
+|+|+++..++.....++..++......++|+++++||+|+.+
T Consensus 87 -------------------------------------~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 129 (173)
T cd04155 87 -------------------------------------YVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLAT 129 (173)
T ss_pred -------------------------------------EEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCcc
Confidence 9999999999998888888887665556899999999999988
Q ss_pred hhhHHHHHHHhCC--------cEEEEeccchHHHHHHhhhhc
Q psy2970 178 ALDEKELIDRIMI--------DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 178 ~~e~~~l~~~~~~--------~~~etSAk~~~~~~~~l~~i~ 211 (329)
..+.+++.+.+++ +++++||+++.+.+++++.+.
T Consensus 130 ~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 171 (173)
T cd04155 130 AAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVC 171 (173)
T ss_pred CCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHh
Confidence 7667777777775 368999999888888877653
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-22 Score=178.77 Aligned_cols=149 Identities=21% Similarity=0.321 Sum_probs=123.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+.||+++|++|||||||++++..+.+.+.+.+|++..+.. +++..+.+.+|||+|++.+......+++++++++
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~l--- 77 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVIL--- 77 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEE---
Confidence 4699999999999999999999888887778887766542 3556678999999999988877777889999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHH-HHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRN-ELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~-~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++++|+.+.. |+..+... ..++|+++||||+|+
T Consensus 78 --------------------------------------lv~~i~~~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~Dl 117 (187)
T cd04129 78 --------------------------------------IGFAVDTPDSLENVRTKWIEEVRRY--CPNVPVILVGLKKDL 117 (187)
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhh
Confidence 9999999999999974 77766543 357999999999998
Q ss_pred CCh---------------hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 176 PNA---------------LDEKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 176 ~~~---------------~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
.+. .+++.++++++. +|+||||+++.+++++++.+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~ 169 (187)
T cd04129 118 RQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAAT 169 (187)
T ss_pred hhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHH
Confidence 541 356778899985 899999999888888876654
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-22 Score=174.04 Aligned_cols=148 Identities=17% Similarity=0.209 Sum_probs=114.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--EeeCceEEEEEEecCCCccccchHHHHhhccceeEeecce
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~ 98 (329)
+||+++|++|||||||++++.++.+...+.++...... .++...+.+.+|||||++.++..+..+++.+|+++
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i----- 75 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVIC----- 75 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEE-----
Confidence 48999999999999999999999987554443322111 24567789999999999988888888889999999
Q ss_pred eeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHH-HHHHHHhCCcCCCCcEEEEEEcCCCCC
Q psy2970 99 YIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRN-ELHALIEKPQLIGIPILVLGNKRDLPN 177 (329)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~-~l~~i~~~~~~~~iPIiLVgNK~Dl~~ 177 (329)
+|||++++++|+.+.. |+..+.+. ..++|+++|+||+|+.+
T Consensus 76 ------------------------------------lv~d~~~~~s~~~~~~~~~~~i~~~--~~~~pviiv~nK~Dl~~ 117 (166)
T cd01893 76 ------------------------------------LVYSVDRPSTLERIRTKWLPLIRRL--GVKVPIILVGNKSDLRD 117 (166)
T ss_pred ------------------------------------EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhccc
Confidence 9999999999999864 55555433 24799999999999976
Q ss_pred hhh-------HHHHHHHhC--CcEEEEeccchHHHHHHhhhhc
Q psy2970 178 ALD-------EKELIDRIM--IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 178 ~~e-------~~~l~~~~~--~~~~etSAk~~~~~~~~l~~i~ 211 (329)
..+ ...+++++. .+++++||+++.+.++++..+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~ 160 (166)
T cd01893 118 GSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQ 160 (166)
T ss_pred ccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHH
Confidence 422 233444554 3799999999888888776553
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-22 Score=180.54 Aligned_cols=149 Identities=19% Similarity=0.192 Sum_probs=122.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE---EeeCceEEEEEEecCCCccccchHHHHhhccceeEeecce
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~---~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~ 98 (329)
||+++|++|||||||++++..+.+...+.+|++.... .+.+..+.+++||+||++.+..++..+++++|+++
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vi----- 75 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFA----- 75 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEE-----
Confidence 6899999999999999999999988777888753222 23455688999999999999999999999999999
Q ss_pred eeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh
Q psy2970 99 YIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA 178 (329)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~ 178 (329)
+|||++++++|+.+..|+..+.+.....++|++||+||+|+...
T Consensus 76 ------------------------------------lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~ 119 (198)
T cd04147 76 ------------------------------------LVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEE 119 (198)
T ss_pred ------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccc
Confidence 99999999999999999998887655568999999999999652
Q ss_pred ------hhHHHHH-HHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 179 ------LDEKELI-DRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 179 ------~e~~~l~-~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.+..+.. ..++.+++++||+++.+++++++.+.
T Consensus 120 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 120 ERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred cccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 1222222 24567899999999877887776654
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=177.07 Aligned_cols=150 Identities=24% Similarity=0.379 Sum_probs=127.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEe----eCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i----~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
...+||+++|++|||||||++++..+.+...+.||++.++... +.+.+.+.+|||+|++.+..++..+++.+++++
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i 86 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAI 86 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEE
Confidence 4579999999999999999999999988888999999887652 567899999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||+++..+|..+..|+..+.+. ..++|++++|||+
T Consensus 87 -----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~i~lv~nK~ 123 (215)
T PTZ00132 87 -----------------------------------------IMFDVTSRITYKNVPNWHRDIVRV--CENIPIVLVGNKV 123 (215)
T ss_pred -----------------------------------------EEEECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECc
Confidence 999999999999999999888654 3579999999999
Q ss_pred CCCCh---hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 174 DLPNA---LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 174 Dl~~~---~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|+.+. .+..++++..++.++++||+++...++.+..+
T Consensus 124 Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~i 163 (215)
T PTZ00132 124 DVKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPFLWL 163 (215)
T ss_pred cCccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 98653 23446777788999999999955555544333
|
|
| >KOG0070|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-22 Score=179.59 Aligned_cols=162 Identities=31% Similarity=0.675 Sum_probs=140.9
Q ss_pred ChHHHHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccc
Q psy2970 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS 80 (329)
Q Consensus 1 m~~~~~~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~ 80 (329)
|..++++++. .++.+++++|+++|.-|+||||++.++..+++.+. .||+|.++..+..+++++++||.+||++++.
T Consensus 1 MG~~~s~~~~---~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~ 76 (181)
T KOG0070|consen 1 MGLIFSKLFS---GLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEYKNISFTVWDVGGQEKLRP 76 (181)
T ss_pred Ccchhhhhhh---hccCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEEcceEEEEEecCCCccccc
Confidence 4445555553 66788999999999999999999999999988755 9999999999999999999999999999999
Q ss_pred hHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc
Q psy2970 81 MWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ 160 (329)
Q Consensus 81 ~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~ 160 (329)
+|..|+++++++| ||+|-+|++.+.+.++.+..++....
T Consensus 77 lW~~Y~~~t~~lI-----------------------------------------fVvDS~Dr~Ri~eak~eL~~~l~~~~ 115 (181)
T KOG0070|consen 77 LWKHYFQNTQGLI-----------------------------------------FVVDSSDRERIEEAKEELHRMLAEPE 115 (181)
T ss_pred chhhhccCCcEEE-----------------------------------------EEEeCCcHHHHHHHHHHHHHHHcCcc
Confidence 9999999999999 99999999999999999999999887
Q ss_pred CCCCcEEEEEEcCCCCChhhHHHHHHHhCC--------cEEEEeccchHHHHHHh
Q psy2970 161 LIGIPILVLGNKRDLPNALDEKELIDRIMI--------DFWITLTLLIRWCESFL 207 (329)
Q Consensus 161 ~~~iPIiLVgNK~Dl~~~~e~~~l~~~~~~--------~~~etSAk~~~~~~~~l 207 (329)
..+.|+++++||.|++++..+.++.+.+++ .+..|+|.++....+-+
T Consensus 116 l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl 170 (181)
T KOG0070|consen 116 LRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGL 170 (181)
T ss_pred cCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHH
Confidence 789999999999999999888888877764 24556777755444433
|
|
| >KOG0097|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-22 Score=173.76 Aligned_cols=150 Identities=20% Similarity=0.329 Sum_probs=133.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
--+|-+++|+-|||||+|+.+|...+|-.+-+.|+|+.+. .+.++.++++||||+|||+|+...++|++++.+.+
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal- 88 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL- 88 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee-
Confidence 3479999999999999999999999997777888888765 36789999999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++.++++..+..|+....+. ..++..|+++|||.|
T Consensus 89 ----------------------------------------mvyditrrstynhlsswl~dar~l-tnpnt~i~lignkad 127 (215)
T KOG0097|consen 89 ----------------------------------------MVYDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKAD 127 (215)
T ss_pred ----------------------------------------EEEEehhhhhhhhHHHHHhhhhcc-CCCceEEEEecchhh
Confidence 999999999999999999988654 357888999999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccc-hHHHHHHhhhh
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLL-IRWCESFLHHF 210 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~-~~~~~~~l~~i 210 (329)
+..+ +++++++++.|+.|+|+|||+ .++.++|++..
T Consensus 128 le~qrdv~yeeak~faeengl~fle~saktg~nvedafle~a 169 (215)
T KOG0097|consen 128 LESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETA 169 (215)
T ss_pred hhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHH
Confidence 9876 679999999999999999999 66666777654
|
|
| >KOG0073|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.5e-21 Score=169.19 Aligned_cols=145 Identities=31% Similarity=0.584 Sum_probs=130.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
..++++|+++|..|+||||++++|.+.+. ....||.|.+++.+..+.+++++||++||..+++.|+.|+..+|++|
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~~-~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglI--- 88 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGEDT-DTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLI--- 88 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCCc-cccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEE---
Confidence 35699999999999999999999998774 46789999999999999999999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|+|.+|+.+|++....+.+++......+.|++|++||.|++
T Consensus 89 --------------------------------------wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 89 --------------------------------------WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLP 130 (185)
T ss_pred --------------------------------------EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCc
Confidence 999999999999999999999887777889999999999999
Q ss_pred Ch---------hhHHHHHHHhCCcEEEEeccchHHH
Q psy2970 177 NA---------LDEKELIDRIMIDFWITLTLLIRWC 203 (329)
Q Consensus 177 ~~---------~e~~~l~~~~~~~~~etSAk~~~~~ 203 (329)
.+ .+++++++....+.+.|||.++...
T Consensus 131 ~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l 166 (185)
T KOG0073|consen 131 GALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDL 166 (185)
T ss_pred cccCHHHHHHhhCHHHhccccCceEEEEeccccccH
Confidence 65 3456666777789999999996433
|
|
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-21 Score=187.32 Aligned_cols=131 Identities=17% Similarity=0.386 Sum_probs=112.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--Ee--e-------------CceEEEEEEecCCCccccch
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--KI--T-------------KGNVTIKVWDIGGQPRFRSM 81 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~i--~-------------~~~~~l~I~DtpG~e~~~~~ 81 (329)
.++||+++|+.|||||||+++|.++.+...+.||+|.++. .+ + .+.+.++||||+|+++|+.+
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL 99 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDC 99 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhh
Confidence 4689999999999999999999999998888999997763 22 2 24688999999999999999
Q ss_pred HHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc-
Q psy2970 82 WERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ- 160 (329)
Q Consensus 82 ~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~- 160 (329)
+..++++++++| +|||++++++|+++..|+.++.....
T Consensus 100 ~~~yyr~AdgiI-----------------------------------------LVyDITdr~SFenL~kWl~eI~~~~~~ 138 (334)
T PLN00023 100 RSLFYSQINGVI-----------------------------------------FVHDLSQRRTKTSLQKWASEVAATGTF 138 (334)
T ss_pred hHHhccCCCEEE-----------------------------------------EEEeCCCHHHHHHHHHHHHHHHHhccc
Confidence 999999999999 99999999999999999999876421
Q ss_pred ----------CCCCcEEEEEEcCCCCCh-----------hhHHHHHHHhCC
Q psy2970 161 ----------LIGIPILVLGNKRDLPNA-----------LDEKELIDRIMI 190 (329)
Q Consensus 161 ----------~~~iPIiLVgNK~Dl~~~-----------~e~~~l~~~~~~ 190 (329)
..++|++|||||+|+.+. +++++++++.++
T Consensus 139 s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 139 SAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGL 189 (334)
T ss_pred ccccccccccCCCCcEEEEEECccccccccccccccccHHHHHHHHHHcCC
Confidence 135899999999999542 457788888874
|
|
| >KOG0393|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.3e-22 Score=181.38 Aligned_cols=147 Identities=18% Similarity=0.317 Sum_probs=128.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---e-eCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---I-TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i-~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
..+|+++||++++|||+|+..+..+.|++.|.||+-.++.. + +++.+.+.+|||+||++|..++...+.++|.++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl- 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL- 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE-
Confidence 46899999999999999999999999999999999987763 6 488999999999999999888888999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHH-HHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~-~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
++|++.+++||+++. .|+.++... .+++|++|||+|.
T Consensus 82 ----------------------------------------~cfsv~~p~S~~nv~~kW~pEi~~~--cp~vpiiLVGtk~ 119 (198)
T KOG0393|consen 82 ----------------------------------------LCFSVVSPESFENVKSKWIPEIKHH--CPNVPIILVGTKA 119 (198)
T ss_pred ----------------------------------------EEEEcCChhhHHHHHhhhhHHHHhh--CCCCCEEEEeehH
Confidence 999999999999975 577777665 4899999999999
Q ss_pred CCCCh-----------------hhHHHHHHHhC-CcEEEEeccchHHHHHHhh
Q psy2970 174 DLPNA-----------------LDEKELIDRIM-IDFWITLTLLIRWCESFLH 208 (329)
Q Consensus 174 Dl~~~-----------------~e~~~l~~~~~-~~~~etSAk~~~~~~~~l~ 208 (329)
||.++ +++.++++++| ..|+||||+++.+..+.++
T Consensus 120 DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~ 172 (198)
T KOG0393|consen 120 DLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFD 172 (198)
T ss_pred HhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHH
Confidence 99842 46889999999 6799999999555555543
|
|
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.8e-20 Score=156.35 Aligned_cols=147 Identities=17% Similarity=0.123 Sum_probs=104.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCC-C-CCceeeeEEEeeCceEEEEEEecCCCccccch----HH-----HHhhccc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQD-M-IPTVGFNMRKITKGNVTIKVWDIGGQPRFRSM----WE-----RYCRGVN 90 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~-~-~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~----~~-----~~~~~ad 90 (329)
+|+++|++|||||||++++.++.+... + .+|.+.....++.++.++.+|||||+.+.... +. .....+|
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d 81 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRA 81 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccC
Confidence 799999999999999999999887432 2 23555666566667789999999998532110 00 0011134
Q ss_pred eeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccH--HHHHHHHHHHHhCCcCCCCcEEE
Q psy2970 91 AIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKL--EASRNELHALIEKPQLIGIPILV 168 (329)
Q Consensus 91 ~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~--~~~~~~l~~i~~~~~~~~iPIiL 168 (329)
+++ +|+|++++.++ +....|+..+.+. ..+.|+++
T Consensus 82 ~~l-----------------------------------------~v~d~~~~~~~~~~~~~~~~~~l~~~--~~~~pvil 118 (168)
T cd01897 82 AVL-----------------------------------------FLFDPSETCGYSLEEQLSLFEEIKPL--FKNKPVIV 118 (168)
T ss_pred cEE-----------------------------------------EEEeCCcccccchHHHHHHHHHHHhh--cCcCCeEE
Confidence 444 99999987653 6666777776543 24799999
Q ss_pred EEEcCCCCChhh---HHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 169 LGNKRDLPNALD---EKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 169 VgNK~Dl~~~~e---~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+||+|+.+..+ .+++.+..+.+++++||+++.+.+++++.+.
T Consensus 119 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 164 (168)
T cd01897 119 VLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDEVKNKAC 164 (168)
T ss_pred EEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHHHHHHHH
Confidence 999999976533 3455555567899999999888888876654
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >KOG0071|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=4e-20 Score=159.31 Aligned_cols=152 Identities=36% Similarity=0.691 Sum_probs=134.9
Q ss_pred HHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccce
Q psy2970 12 FKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNA 91 (329)
Q Consensus 12 ~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~ 91 (329)
+.++|..|+++|+.+|..++||||++..+..+... ...||+|.++..++.+++.+.+||++|+++.+.+|.+|+..+.+
T Consensus 9 ~~k~f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqg 87 (180)
T KOG0071|consen 9 LSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQG 87 (180)
T ss_pred HHHHhCcccceEEEEecccCCceehhhHHhcCCCc-ccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCce
Confidence 35667889999999999999999999999988765 56899999999999999999999999999999999999999999
Q ss_pred eEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEE
Q psy2970 92 IVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGN 171 (329)
Q Consensus 92 iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgN 171 (329)
+| ||+|..+.+.+++.++.+..+++.++..+.|++|.+|
T Consensus 88 lI-----------------------------------------FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlAN 126 (180)
T KOG0071|consen 88 LI-----------------------------------------FVVDSADRDRIEEARNELHRIINDREMRDAIILILAN 126 (180)
T ss_pred EE-----------------------------------------EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEec
Confidence 99 9999999999999999999999998889999999999
Q ss_pred cCCCCChhhHHHHHHHhCCc--------EEEEeccchHHHHH
Q psy2970 172 KRDLPNALDEKELIDRIMID--------FWITLTLLIRWCES 205 (329)
Q Consensus 172 K~Dl~~~~e~~~l~~~~~~~--------~~etSAk~~~~~~~ 205 (329)
|.|++++...+++.+.+++. ...++|.++....+
T Consensus 127 kQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 127 KQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKE 168 (180)
T ss_pred CcccccccCHHHHHHHhccccccCCccEeeccccccchhHHH
Confidence 99999998888877777642 44567776544433
|
|
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-19 Score=147.96 Aligned_cols=149 Identities=20% Similarity=0.266 Sum_probs=113.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE--eeCce--EEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK--ITKGN--VTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~--i~~~~--~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
++||+++|.+|+|||||++++..+.+...+.++++.++.. +..++ +.+.+||+||++.+..++..+.+.+++++
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i-- 78 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSL-- 78 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEE--
Confidence 4799999999999999999999998777777777766654 43344 88999999999999999998999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc-ccHHHHH-HHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT-DKLEASR-NELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~-~S~~~~~-~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
.++|+... .++.... .+...+..... .+.|+++++||+
T Consensus 79 ---------------------------------------~~~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~ 118 (161)
T TIGR00231 79 ---------------------------------------RVFDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKI 118 (161)
T ss_pred ---------------------------------------EEEEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcc
Confidence 77787766 5555555 55555544432 288999999999
Q ss_pred CCCChh---hHH-HHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 174 DLPNAL---DEK-ELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 174 Dl~~~~---e~~-~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|+.... +.. .+......+++++||+.+...+.+++.+
T Consensus 119 D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 119 DLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred cCCcchhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 997642 222 2333335689999999987777776654
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-19 Score=157.14 Aligned_cols=144 Identities=16% Similarity=0.215 Sum_probs=108.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC-------CCCCCCCce------eeeEE----Ee-----eCceEEEEEEecCCCcccc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ-------FSQDMIPTV------GFNMR----KI-----TKGNVTIKVWDIGGQPRFR 79 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~-------~~~~~~pTi------g~~~~----~i-----~~~~~~l~I~DtpG~e~~~ 79 (329)
+|+++|.+|||||||++++.+.. +...+.+|. |..+. .+ +.+.+.+.+|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998732 222233322 22221 11 5677889999999999999
Q ss_pred chHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC
Q psy2970 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP 159 (329)
Q Consensus 80 ~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~ 159 (329)
..+..+++.+|+++ +|+|+++..+++....|.. +.
T Consensus 82 ~~~~~~~~~ad~~i-----------------------------------------~v~D~~~~~~~~~~~~~~~-~~--- 116 (179)
T cd01890 82 YEVSRSLAACEGAL-----------------------------------------LLVDATQGVEAQTLANFYL-AL--- 116 (179)
T ss_pred HHHHHHHHhcCeEE-----------------------------------------EEEECCCCccHhhHHHHHH-HH---
Confidence 99999999999999 9999998766665554433 22
Q ss_pred cCCCCcEEEEEEcCCCCCh---hhHHHHHHHhCCc---EEEEeccchHHHHHHhhhhc
Q psy2970 160 QLIGIPILVLGNKRDLPNA---LDEKELIDRIMID---FWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 160 ~~~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~~~---~~etSAk~~~~~~~~l~~i~ 211 (329)
..++|+++|+||+|+.+. ...+++++.++++ ++++||+++.+.+++++.+.
T Consensus 117 -~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 173 (179)
T cd01890 117 -ENNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIV 173 (179)
T ss_pred -HcCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHH
Confidence 246899999999999653 2245777877774 89999999888888776664
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-19 Score=152.58 Aligned_cols=143 Identities=17% Similarity=0.162 Sum_probs=100.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC---CCCCC--CCceeeeEEEeeCc-eEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQ---FSQDM--IPTVGFNMRKITKG-NVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~---~~~~~--~pTig~~~~~i~~~-~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
+.|+++|++|||||||++++.+.+ +...+ ..|++..+..+... ...+.+|||||++++......+++++|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii- 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVL- 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEE-
Confidence 468999999999999999999643 33222 33555555544433 678999999999988776667788999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCC---cccHHHHHHHHHHHHhCCcCCCCcEEEEEE
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAAD---TDKLEASRNELHALIEKPQLIGIPILVLGN 171 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~---~~S~~~~~~~l~~i~~~~~~~~iPIiLVgN 171 (329)
+|+|+++ +++.+.+ ..+ +. ....|+++|+|
T Consensus 80 ----------------------------------------~V~d~~~~~~~~~~~~~----~~~-~~--~~~~~~ilv~N 112 (164)
T cd04171 80 ----------------------------------------LVVAADEGIMPQTREHL----EIL-EL--LGIKRGLVVLT 112 (164)
T ss_pred ----------------------------------------EEEECCCCccHhHHHHH----HHH-HH--hCCCcEEEEEE
Confidence 9999986 2332222 111 11 11248999999
Q ss_pred cCCCCChh-------hHHHHHHH---hCCcEEEEeccchHHHHHHhhhhc
Q psy2970 172 KRDLPNAL-------DEKELIDR---IMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 172 K~Dl~~~~-------e~~~l~~~---~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+|+.++. +..+..+. .+.+++++||++..+.+++++.+.
T Consensus 113 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 162 (164)
T cd04171 113 KADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLD 162 (164)
T ss_pred CccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHh
Confidence 99997652 22233333 357899999999888888776653
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.9e-20 Score=154.59 Aligned_cols=129 Identities=16% Similarity=0.190 Sum_probs=96.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCc-----cccchHHHHhhccceeEeec
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQP-----RFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e-----~~~~~~~~~~~~ad~iI~~~ 96 (329)
||+++|++|||||||++++.++.+ .+.+|++.++.. .+|||||+. .++.+.. .++++|+++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~~~--------~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi--- 67 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVEYND--------GAIDTPGEYVENRRLYSALIV-TAADADVIA--- 67 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEEEcC--------eeecCchhhhhhHHHHHHHHH-HhhcCCEEE---
Confidence 899999999999999999998876 356676665532 689999983 2333333 478899999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++.++... .|. +.. ..|+++|+||+|+.
T Consensus 68 --------------------------------------lv~d~~~~~s~~~~-~~~-~~~------~~p~ilv~NK~Dl~ 101 (142)
T TIGR02528 68 --------------------------------------LVQSATDPESRFPP-GFA-SIF------VKPVIGLVTKIDLA 101 (142)
T ss_pred --------------------------------------EEecCCCCCcCCCh-hHH-Hhc------cCCeEEEEEeeccC
Confidence 99999999887542 232 221 23999999999996
Q ss_pred Ch----hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhh
Q psy2970 177 NA----LDEKELIDRIMI-DFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 177 ~~----~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i 210 (329)
+. .++++++++.+. +++++||+++...+++++.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 140 (142)
T TIGR02528 102 EADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYL 140 (142)
T ss_pred CcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHH
Confidence 53 345667777776 79999999988888877654
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.3e-19 Score=152.81 Aligned_cols=149 Identities=21% Similarity=0.247 Sum_probs=105.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCC--CCCceeeeEEEeeCceE-EEEEEecCCCc----cccchHHHHhh---ccce
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQD--MIPTVGFNMRKITKGNV-TIKVWDIGGQP----RFRSMWERYCR---GVNA 91 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~--~~pTig~~~~~i~~~~~-~l~I~DtpG~e----~~~~~~~~~~~---~ad~ 91 (329)
+|+++|++|||||||+|++.+.+.... ..+|....+..+..++. .+.+|||||+. ..+.+...+++ .+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 589999999999999999997654211 12333333333444444 89999999974 22233444433 5888
Q ss_pred eEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc-ccHHHHHHHHHHHHhCC-cCCCCcEEEE
Q psy2970 92 IVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT-DKLEASRNELHALIEKP-QLIGIPILVL 169 (329)
Q Consensus 92 iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~-~S~~~~~~~l~~i~~~~-~~~~iPIiLV 169 (329)
++ +|+|++++ ++++....|..++.+.. ...+.|+++|
T Consensus 82 vi-----------------------------------------~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv 120 (170)
T cd01898 82 LL-----------------------------------------HVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVV 120 (170)
T ss_pred EE-----------------------------------------EEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEE
Confidence 88 99999999 78888888877776542 2347899999
Q ss_pred EEcCCCCChhh----HHHHHHH-hCCcEEEEeccchHHHHHHhhhhc
Q psy2970 170 GNKRDLPNALD----EKELIDR-IMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 170 gNK~Dl~~~~e----~~~l~~~-~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+||+|+.+..+ .+++..+ .+.+++++||+....++++++.+.
T Consensus 121 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 167 (170)
T cd01898 121 LNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGLDELLRKLA 167 (170)
T ss_pred EEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHH
Confidence 99999976532 3344444 367899999999888888776553
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-19 Score=161.72 Aligned_cols=147 Identities=21% Similarity=0.210 Sum_probs=103.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCC-----------CccccchHHHHh
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGG-----------QPRFRSMWERYC 86 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG-----------~e~~~~~~~~~~ 86 (329)
.+..+|+++|++|||||||+|++.++.+...+.|+++.....+..+ .+.+||||| ++.++..+..++
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYI 84 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999887666666666554444433 588999999 566666666666
Q ss_pred h-cc---ceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccH-HH--------HHHHHH
Q psy2970 87 R-GV---NAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKL-EA--------SRNELH 153 (329)
Q Consensus 87 ~-~a---d~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~-~~--------~~~~l~ 153 (329)
+ .+ +.++ +|+|.++...+ +. ....+.
T Consensus 85 ~~~~~~~~~vi-----------------------------------------~v~d~~~~~~~~~~~~~~~~~~~~~~l~ 123 (201)
T PRK04213 85 EDNADRILAAV-----------------------------------------LVVDGKSFIEIIERWEGRGEIPIDVEMF 123 (201)
T ss_pred HhhhhhheEEE-----------------------------------------EEEeCccccccccccccCCCcHHHHHHH
Confidence 5 33 3444 78887543221 10 011112
Q ss_pred HHHhCCcCCCCcEEEEEEcCCCCChh--hHHHHHHHhCC---------cEEEEeccchHHHHHHhhhhc
Q psy2970 154 ALIEKPQLIGIPILVLGNKRDLPNAL--DEKELIDRIMI---------DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 154 ~i~~~~~~~~iPIiLVgNK~Dl~~~~--e~~~l~~~~~~---------~~~etSAk~~~~~~~~l~~i~ 211 (329)
..+. ..++|+++|+||+|+.+.. ..+++++.+++ +++++||+++ +++++++.+.
T Consensus 124 ~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~ 188 (201)
T PRK04213 124 DFLR---ELGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIR 188 (201)
T ss_pred HHHH---HcCCCeEEEEECccccCcHHHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHH
Confidence 2222 2478999999999997653 56778888876 4899999999 8888887664
|
|
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.3e-19 Score=157.24 Aligned_cols=118 Identities=31% Similarity=0.499 Sum_probs=99.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEe----eCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i----~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
..+||+++|++|||||||++++.++.+...+.+|++..+... ..+.+++.+|||+|+++++.++..++.++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l- 82 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGIL- 82 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEE-
Confidence 449999999999999999999999999999999988776542 223788999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc-ccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT-DKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~-~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+++|.++. .+++....|..++.... ..+.|+++|+||+
T Consensus 83 ----------------------------------------~~~d~~~~~~~~~~~~~~~~~l~~~~-~~~~~iilv~nK~ 121 (219)
T COG1100 83 ----------------------------------------IVYDSTLRESSDELTEEWLEELRELA-PDDVPILLVGNKI 121 (219)
T ss_pred ----------------------------------------EEEecccchhhhHHHHHHHHHHHHhC-CCCceEEEEeccc
Confidence 99999995 44555566666665542 2579999999999
Q ss_pred CCCCh
Q psy2970 174 DLPNA 178 (329)
Q Consensus 174 Dl~~~ 178 (329)
|+...
T Consensus 122 Dl~~~ 126 (219)
T COG1100 122 DLFDE 126 (219)
T ss_pred ccccc
Confidence 99875
|
|
| >KOG4252|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.2e-20 Score=165.61 Aligned_cols=149 Identities=21% Similarity=0.327 Sum_probs=132.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
..-+|++++|..+|||||++++++.+.|..+|..|+|.++.. +..+++++.+|||+||+.+......|+++|.+.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 346899999999999999999999999999999999988753 6778888999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+||+.+|+.||+...+|.+++... ..++|.++|-||+
T Consensus 98 -----------------------------------------LVFSTTDr~SFea~~~w~~kv~~e--~~~IPtV~vqNKI 134 (246)
T KOG4252|consen 98 -----------------------------------------LVFSTTDRYSFEATLEWYNKVQKE--TERIPTVFVQNKI 134 (246)
T ss_pred -----------------------------------------EEEecccHHHHHHHHHHHHHHHHH--hccCCeEEeeccc
Confidence 999999999999999999999765 4689999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhh
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHH 209 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~ 209 (329)
|+.++ .+.+.+++++...++.+|++..-+....+..
T Consensus 135 Dlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~Y 175 (246)
T KOG4252|consen 135 DLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAY 175 (246)
T ss_pred hhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHH
Confidence 99765 6788999999999999999994444444433
|
|
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.2e-19 Score=143.29 Aligned_cols=110 Identities=25% Similarity=0.517 Sum_probs=85.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC------CCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFS------QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~------~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
||+|+|++|||||||+++|.++.+. +....++......+......+.+||++|++.+...+...+..+|+++
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i-- 78 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVI-- 78 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEE--
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEE--
Confidence 7999999999999999999988765 12233444444456666667999999999988888777899999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHH---HHHHHhCCcCCCCcEEEEEEc
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNE---LHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~---l~~i~~~~~~~~iPIiLVgNK 172 (329)
+|||++++++|+++.++ +..+... ..++|++|||||
T Consensus 79 ---------------------------------------lv~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK 117 (119)
T PF08477_consen 79 ---------------------------------------LVYDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNK 117 (119)
T ss_dssp ---------------------------------------EEEECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-
T ss_pred ---------------------------------------EEEcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEec
Confidence 99999999999997555 4444332 356999999999
Q ss_pred CC
Q psy2970 173 RD 174 (329)
Q Consensus 173 ~D 174 (329)
.|
T Consensus 118 ~D 119 (119)
T PF08477_consen 118 SD 119 (119)
T ss_dssp TC
T ss_pred cC
Confidence 98
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-18 Score=154.96 Aligned_cols=127 Identities=20% Similarity=0.362 Sum_probs=109.0
Q ss_pred CCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcC
Q psy2970 43 GQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDL 118 (329)
Q Consensus 43 ~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (329)
+.|.+.|.||+|.++.. ++++.+++.||||||+++++.++..+++++|+++
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~i------------------------- 57 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAI------------------------- 57 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEE-------------------------
Confidence 46777899999987753 4577899999999999999999999999999999
Q ss_pred CCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh-----hhHHHHHHHhCCcEE
Q psy2970 119 GVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-----LDEKELIDRIMIDFW 193 (329)
Q Consensus 119 ~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~-----~e~~~l~~~~~~~~~ 193 (329)
+|||++++++|+.+..|+.++.+.. ..++|++|||||+|+.+. .++..+++.++..|+
T Consensus 58 ----------------lv~D~t~~~sf~~~~~w~~~i~~~~-~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~ 120 (176)
T PTZ00099 58 ----------------VVYDITNRQSFENTTKWIQDILNER-GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFH 120 (176)
T ss_pred ----------------EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEE
Confidence 9999999999999999999987653 357899999999999642 567788888899999
Q ss_pred EEeccchHHHHHHhhhhc
Q psy2970 194 ITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 194 etSAk~~~~~~~~l~~i~ 211 (329)
|+||+++.+.+++++.+.
T Consensus 121 e~SAk~g~nV~~lf~~l~ 138 (176)
T PTZ00099 121 ETSAKAGHNIKVLFKKIA 138 (176)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999777787776553
|
|
| >KOG0076|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-19 Score=159.28 Aligned_cols=161 Identities=33% Similarity=0.632 Sum_probs=136.6
Q ss_pred ChHHHHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCC---C----CCCCCCceeeeEEEeeCceEEEEEEecC
Q psy2970 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQ---F----SQDMIPTVGFNMRKITKGNVTIKVWDIG 73 (329)
Q Consensus 1 m~~~~~~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~---~----~~~~~pTig~~~~~i~~~~~~l~I~Dtp 73 (329)
||.|+..++.++ |.|+.+.|+++|.-++|||||+.+..... + .....||+|.+...++....++.+||..
T Consensus 1 m~tl~~gl~~~~---~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlg 77 (197)
T KOG0076|consen 1 MFTLMSGLYKYM---FKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLG 77 (197)
T ss_pred ChhHHHHHHHHH---hhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcC
Confidence 888888777554 66789999999999999999999985421 1 1344589999998888778899999999
Q ss_pred CCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHH
Q psy2970 74 GQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELH 153 (329)
Q Consensus 74 G~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~ 153 (329)
||+..+++|..||..++++| +++|.+|++.|+.....++
T Consensus 78 GQe~lrSlw~~yY~~~H~ii-----------------------------------------~viDa~~~eR~~~~~t~~~ 116 (197)
T KOG0076|consen 78 GQESLRSLWKKYYWLAHGII-----------------------------------------YVIDATDRERFEESKTAFE 116 (197)
T ss_pred ChHHHHHHHHHHHHHhceeE-----------------------------------------EeecCCCHHHHHHHHHHHH
Confidence 99999999999999999999 9999999999999999999
Q ss_pred HHHhCCcCCCCcEEEEEEcCCCCChhhHHHHHHHhC---------CcEEEEeccchHHHHH
Q psy2970 154 ALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRIM---------IDFWITLTLLIRWCES 205 (329)
Q Consensus 154 ~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~~l~~~~~---------~~~~etSAk~~~~~~~ 205 (329)
.+.......++|+++.+||.|+.++.+++++..-++ .++..+||.++++.++
T Consensus 117 ~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~e 177 (197)
T KOG0076|consen 117 KVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKE 177 (197)
T ss_pred HHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccHHH
Confidence 998887788999999999999999865555443333 5799999999665554
|
|
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-18 Score=153.75 Aligned_cols=152 Identities=19% Similarity=0.186 Sum_probs=107.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCceeeeEEEeeCce-EEEEEEecCCCccccc--hHH------HHh
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTVGFNMRKITKGN-VTIKVWDIGGQPRFRS--MWE------RYC 86 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~--~~~~pTig~~~~~i~~~~-~~l~I~DtpG~e~~~~--~~~------~~~ 86 (329)
+..++|+++|++|||||||++++.++.+. ..+.+|++.....+...+ ..+.+|||||..+... ... ..+
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 118 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEV 118 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHHH
Confidence 34579999999999999999999998753 223456555554443323 4899999999743211 111 124
Q ss_pred hccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcE
Q psy2970 87 RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPI 166 (329)
Q Consensus 87 ~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPI 166 (329)
..+|+++ +|+|++++.+++....+...+ +.....++|+
T Consensus 119 ~~~d~ii-----------------------------------------~v~D~~~~~~~~~~~~~~~~l-~~~~~~~~~v 156 (204)
T cd01878 119 AEADLLL-----------------------------------------HVVDASDPDYEEQIETVEKVL-KELGAEDIPM 156 (204)
T ss_pred hcCCeEE-----------------------------------------EEEECCCCChhhHHHHHHHHH-HHcCcCCCCE
Confidence 5677777 999999988877765554433 3223357899
Q ss_pred EEEEEcCCCCChhhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 167 LVLGNKRDLPNALDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 167 iLVgNK~Dl~~~~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
++|+||+|+.+...........+.+++++||+++.+.+++++.+.
T Consensus 157 iiV~NK~Dl~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~ 201 (204)
T cd01878 157 ILVLNKIDLLDDEELEERLEAGRPDAVFISAKTGEGLDELLEAIE 201 (204)
T ss_pred EEEEEccccCChHHHHHHhhcCCCceEEEEcCCCCCHHHHHHHHH
Confidence 999999999876544445555667899999999887888776553
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.6e-18 Score=139.07 Aligned_cols=144 Identities=26% Similarity=0.487 Sum_probs=112.2
Q ss_pred EEcCCCCCHHHHHHHHHcCCC-CCCCCCceeeeEEEe----eCceEEEEEEecCCCccccchHHHHhhccceeEeeccee
Q psy2970 25 LVGLQCSGKTTFVNVIASGQF-SQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLY 99 (329)
Q Consensus 25 llG~~gvGKSSLin~l~~~~~-~~~~~pTig~~~~~i----~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~ 99 (329)
++|++|+|||||++++.+... .....+|. ..+... ......+.+||+||+..+...+..+.+.+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i------ 73 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGII------ 73 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEE------
Confidence 589999999999999998877 44555555 544433 234788999999999988888888899999999
Q ss_pred eehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChh
Q psy2970 100 IVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL 179 (329)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~ 179 (329)
+|+|++++.+++....+...........++|+++++||+|+....
T Consensus 74 -----------------------------------~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~ 118 (157)
T cd00882 74 -----------------------------------LVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEER 118 (157)
T ss_pred -----------------------------------EEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccccc
Confidence 999999999888888874444444445789999999999997653
Q ss_pred h------HHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 180 D------EKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 180 e------~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+ ..........+++++|++.....+++++.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 155 (157)
T cd00882 119 VVSEEELAEQLAKELGVPYFETSAKTGENVEELFEEL 155 (157)
T ss_pred chHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHH
Confidence 2 223455556899999999987777776544
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-18 Score=144.92 Aligned_cols=139 Identities=22% Similarity=0.241 Sum_probs=102.0
Q ss_pred EEcCCCCCHHHHHHHHHcCCCCCCCCC--ceeeeEEEeeCceEEEEEEecCCCccccc------hHHHHhh--ccceeEe
Q psy2970 25 LVGLQCSGKTTFVNVIASGQFSQDMIP--TVGFNMRKITKGNVTIKVWDIGGQPRFRS------MWERYCR--GVNAIVW 94 (329)
Q Consensus 25 llG~~gvGKSSLin~l~~~~~~~~~~p--Tig~~~~~i~~~~~~l~I~DtpG~e~~~~------~~~~~~~--~ad~iI~ 94 (329)
|+|.+|||||||++++.+..+.....| |.......+..++..+.+|||||++.+.. ++..++. .+|+++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi- 79 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIV- 79 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEE-
Confidence 589999999999999998875443334 33333444555557899999999987654 3455554 788888
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|+|.++++... .++.++.+ .++|+++|+||+|
T Consensus 80 ----------------------------------------~v~d~~~~~~~~---~~~~~~~~----~~~~~iiv~NK~D 112 (158)
T cd01879 80 ----------------------------------------NVVDATNLERNL---YLTLQLLE----LGLPVVVALNMID 112 (158)
T ss_pred ----------------------------------------EEeeCCcchhHH---HHHHHHHH----cCCCEEEEEehhh
Confidence 999998765432 33434432 3689999999999
Q ss_pred CCCh----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 175 LPNA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 175 l~~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.+. .+.+++++.++.+++++||+++...+++++.+.
T Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~ 153 (158)
T cd01879 113 EAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAIA 153 (158)
T ss_pred hcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHH
Confidence 9764 245677888899999999999877887776553
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-17 Score=168.21 Aligned_cols=135 Identities=16% Similarity=0.205 Sum_probs=103.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCceeeeE--EEeeCceEEEEEEecCCCccccch--------HHH
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQF--SQDMIPTVGFNM--RKITKGNVTIKVWDIGGQPRFRSM--------WER 84 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~--~~~~~pTig~~~--~~i~~~~~~l~I~DtpG~e~~~~~--------~~~ 84 (329)
.++.+||+++|++|||||||+|++++.+. ...+..| +.++ ..+..++.++.+|||||+...... ...
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgt-Trd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGT-TRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCc-EEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 45679999999999999999999998753 3333333 3332 345666788899999998665432 235
Q ss_pred HhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCC
Q psy2970 85 YCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGI 164 (329)
Q Consensus 85 ~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~i 164 (329)
+++++|+++ +|+|++++.+++.. |+..+.. .++
T Consensus 279 ~~~~aD~il-----------------------------------------~V~D~s~~~s~~~~--~l~~~~~----~~~ 311 (442)
T TIGR00450 279 AIKQADLVI-----------------------------------------YVLDASQPLTKDDF--LIIDLNK----SKK 311 (442)
T ss_pred HHhhCCEEE-----------------------------------------EEEECCCCCChhHH--HHHHHhh----CCC
Confidence 678899999 99999998887765 5555532 468
Q ss_pred cEEEEEEcCCCCChhhHHHHHHHhCCcEEEEeccch
Q psy2970 165 PILVLGNKRDLPNALDEKELIDRIMIDFWITLTLLI 200 (329)
Q Consensus 165 PIiLVgNK~Dl~~~~e~~~l~~~~~~~~~etSAk~~ 200 (329)
|+++|+||+|+.+. +.+++++.++.+++++||++.
T Consensus 312 piIlV~NK~Dl~~~-~~~~~~~~~~~~~~~vSak~~ 346 (442)
T TIGR00450 312 PFILVLNKIDLKIN-SLEFFVSSKVLNSSNLSAKQL 346 (442)
T ss_pred CEEEEEECccCCCc-chhhhhhhcCCceEEEEEecC
Confidence 99999999999765 556677888899999999983
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.3e-18 Score=144.31 Aligned_cols=146 Identities=24% Similarity=0.191 Sum_probs=104.1
Q ss_pred EEcCCCCCHHHHHHHHHcCCC--CCCCCCceeeeEEEeeCc-eEEEEEEecCCCcc----ccchH---HHHhhccceeEe
Q psy2970 25 LVGLQCSGKTTFVNVIASGQF--SQDMIPTVGFNMRKITKG-NVTIKVWDIGGQPR----FRSMW---ERYCRGVNAIVW 94 (329)
Q Consensus 25 llG~~gvGKSSLin~l~~~~~--~~~~~pTig~~~~~i~~~-~~~l~I~DtpG~e~----~~~~~---~~~~~~ad~iI~ 94 (329)
++|++|||||||+|++.+.++ .....+|.+.....+..+ ..++.+|||||... .+.+. ...++.+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii- 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL- 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE-
Confidence 589999999999999999864 222234444444445555 77899999999732 12222 33567788888
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc------ccHHHHHHHHHHHHhCCc------CC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT------DKLEASRNELHALIEKPQ------LI 162 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~------~S~~~~~~~l~~i~~~~~------~~ 162 (329)
+|+|++++ ++++....+..++..... ..
T Consensus 80 ----------------------------------------~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (176)
T cd01881 80 ----------------------------------------HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLT 119 (176)
T ss_pred ----------------------------------------EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHh
Confidence 99999988 577777777777765432 24
Q ss_pred CCcEEEEEEcCCCCChhhHH-----HHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 163 GIPILVLGNKRDLPNALDEK-----ELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 163 ~iPIiLVgNK~Dl~~~~e~~-----~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.|+++|+||+|+....+.. ......+.+++++||++....+++++.+.
T Consensus 120 ~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~ 173 (176)
T cd01881 120 AKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIY 173 (176)
T ss_pred hCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHH
Confidence 79999999999998764332 23333457799999999888888876653
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-17 Score=148.89 Aligned_cols=138 Identities=22% Similarity=0.291 Sum_probs=99.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc--CCCCCCC------------CCceeee----EEEeeCceEEEEEEecCCCccccchHH
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS--GQFSQDM------------IPTVGFN----MRKITKGNVTIKVWDIGGQPRFRSMWE 83 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~--~~~~~~~------------~pTig~~----~~~i~~~~~~l~I~DtpG~e~~~~~~~ 83 (329)
+|+++|.+|||||||++++.. +.+...+ .++.|.. ...++.+...+.+|||||+++|...+.
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 83 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE 83 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence 799999999999999999997 4443322 1223322 234667788999999999999999999
Q ss_pred HHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCC
Q psy2970 84 RYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIG 163 (329)
Q Consensus 84 ~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~ 163 (329)
.+++.+|+++ +|+|+++.. +.....++..+.. .+
T Consensus 84 ~~~~~~d~~i-----------------------------------------lV~d~~~~~-~~~~~~~~~~~~~----~~ 117 (194)
T cd01891 84 RVLSMVDGVL-----------------------------------------LLVDASEGP-MPQTRFVLKKALE----LG 117 (194)
T ss_pred HHHHhcCEEE-----------------------------------------EEEECCCCc-cHHHHHHHHHHHH----cC
Confidence 9999999999 999998742 3333444444432 46
Q ss_pred CcEEEEEEcCCCCChh------hHHHHHH-------HhCCcEEEEeccchHHHHH
Q psy2970 164 IPILVLGNKRDLPNAL------DEKELID-------RIMIDFWITLTLLIRWCES 205 (329)
Q Consensus 164 iPIiLVgNK~Dl~~~~------e~~~l~~-------~~~~~~~etSAk~~~~~~~ 205 (329)
+|+++|+||+|+.+.. +..++.+ +++++++++||+++....+
T Consensus 118 ~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~ 172 (194)
T cd01891 118 LKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLN 172 (194)
T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEEEeehhccccccc
Confidence 8999999999996431 2222322 2367899999999655433
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-17 Score=140.72 Aligned_cols=144 Identities=19% Similarity=0.171 Sum_probs=102.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcee--eeEEEeeC---ceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITK---GNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig--~~~~~i~~---~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
.|+++|.+|||||||++++.++++.....+++. .....+.. ....+.+|||||++.+..++..++..+|+++
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il--- 78 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAI--- 78 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEE---
Confidence 489999999999999999999887654333333 33333443 3678999999999999888888899999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|+|+++...- .....+..+ . ..++|+++|+||+|+.
T Consensus 79 --------------------------------------~v~d~~~~~~~-~~~~~~~~~-~---~~~~p~ivv~NK~Dl~ 115 (168)
T cd01887 79 --------------------------------------LVVAADDGVMP-QTIEAIKLA-K---AANVPFIVALNKIDKP 115 (168)
T ss_pred --------------------------------------EEEECCCCccH-HHHHHHHHH-H---HcCCCEEEEEEceecc
Confidence 99999874321 112222222 2 1468999999999997
Q ss_pred Chh--hH-HHHHH-------Hh--CCcEEEEeccchHHHHHHhhhhc
Q psy2970 177 NAL--DE-KELID-------RI--MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 177 ~~~--e~-~~l~~-------~~--~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.. .. +++.+ .. ..+++++||+++.+.+++++.+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 162 (168)
T cd01887 116 NANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAIL 162 (168)
T ss_pred cccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHH
Confidence 541 11 11111 11 25799999999888888877664
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-17 Score=138.41 Aligned_cols=142 Identities=18% Similarity=0.117 Sum_probs=100.3
Q ss_pred EEEcCCCCCHHHHHHHHHcCCC--CCCCCCc-eeeeEEEeeCceEEEEEEecCCCccccc--------hHHHHhhcccee
Q psy2970 24 TLVGLQCSGKTTFVNVIASGQF--SQDMIPT-VGFNMRKITKGNVTIKVWDIGGQPRFRS--------MWERYCRGVNAI 92 (329)
Q Consensus 24 lllG~~gvGKSSLin~l~~~~~--~~~~~pT-ig~~~~~i~~~~~~l~I~DtpG~e~~~~--------~~~~~~~~ad~i 92 (329)
+++|.+|||||||++++.+... .....++ ...........+..+.+|||||...... .....++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 4799999999999999998753 2222333 2333444556668899999999987544 334567788888
Q ss_pred EeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 93 VWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+ +|+|..+..+.... .+.+.+.. .+.|+++|+||
T Consensus 81 i-----------------------------------------~v~d~~~~~~~~~~--~~~~~~~~---~~~piiiv~nK 114 (157)
T cd01894 81 L-----------------------------------------FVVDGREGLTPADE--EIAKYLRK---SKKPVILVVNK 114 (157)
T ss_pred E-----------------------------------------EEEeccccCCccHH--HHHHHHHh---cCCCEEEEEEC
Confidence 8 99999875443332 22233322 35899999999
Q ss_pred CCCCChhhHHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 173 RDLPNALDEKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 173 ~Dl~~~~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+.+.....+...+++. +++++||+++...++++..+.
T Consensus 115 ~D~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 154 (157)
T cd01894 115 VDNIKEEDEAAEFYSLGFGEPIPISAEHGRGIGDLLDAIL 154 (157)
T ss_pred cccCChHHHHHHHHhcCCCCeEEEecccCCCHHHHHHHHH
Confidence 999887554444555666 799999999888888776553
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.6e-17 Score=137.81 Aligned_cols=141 Identities=16% Similarity=0.119 Sum_probs=101.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCceeee--EEEeeCceEEEEEEecCCCccccch--------HHHHhhcc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVGFN--MRKITKGNVTIKVWDIGGQPRFRSM--------WERYCRGV 89 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig~~--~~~i~~~~~~l~I~DtpG~e~~~~~--------~~~~~~~a 89 (329)
++|+++|++|+|||||++++.+.... ....+++... ...+..+..++.+|||||...+... ....+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 68999999999999999999987642 1122222222 2334555678999999997655322 12355677
Q ss_pred ceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEE
Q psy2970 90 NAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVL 169 (329)
Q Consensus 90 d~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLV 169 (329)
|+++ +|+|++++.+......+.. ..+.|+++|
T Consensus 82 ~~~v-----------------------------------------~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v 113 (157)
T cd04164 82 DLVL-----------------------------------------FVIDASRGLDEEDLEILEL-------PADKPIIVV 113 (157)
T ss_pred CEEE-----------------------------------------EEEECCCCCCHHHHHHHHh-------hcCCCEEEE
Confidence 7777 9999998877666544332 357899999
Q ss_pred EEcCCCCChhhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 170 GNKRDLPNALDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 170 gNK~Dl~~~~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+||+|+.+..+. .....+.+++++||++....+++.+.+.
T Consensus 114 ~nK~D~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 153 (157)
T cd04164 114 LNKSDLLPDSEL--LSLLAGKPIIAISAKTGEGLDELKEALL 153 (157)
T ss_pred EEchhcCCcccc--ccccCCCceEEEECCCCCCHHHHHHHHH
Confidence 999999876544 4455568899999999888888776654
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.2e-17 Score=159.88 Aligned_cols=148 Identities=16% Similarity=0.210 Sum_probs=101.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC---CCCCCceeeeEEEeeCceEEEEEEecCCCcc-ccchHH-------HHh
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS---QDMIPTVGFNMRKITKGNVTIKVWDIGGQPR-FRSMWE-------RYC 86 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~---~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~-~~~~~~-------~~~ 86 (329)
++..+|+++|++|||||||+|+|.++++. +...+|.......++.++.++.+|||||+.. +..+.. ..+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 46679999999999999999999998774 3333444333334556677899999999843 332222 236
Q ss_pred hccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcE
Q psy2970 87 RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPI 166 (329)
Q Consensus 87 ~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPI 166 (329)
+++|+++ +|+|.++ ++.....++.+.+.. .+.|+
T Consensus 130 ~~aDvil-----------------------------------------~VvD~~~--s~~~~~~~il~~l~~---~~~p~ 163 (339)
T PRK15494 130 HSADLVL-----------------------------------------LIIDSLK--SFDDITHNILDKLRS---LNIVP 163 (339)
T ss_pred hhCCEEE-----------------------------------------EEEECCC--CCCHHHHHHHHHHHh---cCCCE
Confidence 6888888 9999765 455554433333332 34677
Q ss_pred EEEEEcCCCCCh--hhHHHHHHHhC--CcEEEEeccchHHHHHHhhhhc
Q psy2970 167 LVLGNKRDLPNA--LDEKELIDRIM--IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 167 iLVgNK~Dl~~~--~e~~~l~~~~~--~~~~etSAk~~~~~~~~l~~i~ 211 (329)
++|+||+|+.+. .+..+..++.. ..++++||+++.+.+++++.+.
T Consensus 164 IlViNKiDl~~~~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~ 212 (339)
T PRK15494 164 IFLLNKIDIESKYLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYIT 212 (339)
T ss_pred EEEEEhhcCccccHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHH
Confidence 889999999754 33444444443 5799999999888888876653
|
|
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.7e-17 Score=159.51 Aligned_cols=150 Identities=17% Similarity=0.199 Sum_probs=108.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-CCC-CCceeeeEEEeeC-ceEEEEEEecCCCccc----cchHHH---Hhhccc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS-QDM-IPTVGFNMRKITK-GNVTIKVWDIGGQPRF----RSMWER---YCRGVN 90 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~-~~~-~pTig~~~~~i~~-~~~~l~I~DtpG~e~~----~~~~~~---~~~~ad 90 (329)
-.|.|+|.||||||||++++++.+.. ..| .+|.......+.. +..++.+|||||...- ..+... .++.++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~ 238 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 238 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence 36899999999999999999986543 222 3455555544544 4567999999997431 223333 445678
Q ss_pred eeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC-cCCCCcEEEE
Q psy2970 91 AIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP-QLIGIPILVL 169 (329)
Q Consensus 91 ~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~-~~~~iPIiLV 169 (329)
+++ +|+|++++++++....|..++.... ...+.|+++|
T Consensus 239 vlI-----------------------------------------~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV 277 (335)
T PRK12299 239 LLL-----------------------------------------HLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILV 277 (335)
T ss_pred EEE-----------------------------------------EEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEE
Confidence 888 9999999888999888888876532 2357899999
Q ss_pred EEcCCCCChhh-----HHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 170 GNKRDLPNALD-----EKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 170 gNK~Dl~~~~e-----~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+||+|+.++.+ .+.+.++.+.+++++||++...++++++.+.
T Consensus 278 ~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~ 324 (335)
T PRK12299 278 LNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALW 324 (335)
T ss_pred EECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 99999976432 3334455678999999999878888776654
|
|
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-17 Score=146.14 Aligned_cols=142 Identities=22% Similarity=0.266 Sum_probs=102.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCC--CCceeeeEEEeeCceEEEEEEecCCCccccch------HHHHh--hccc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDM--IPTVGFNMRKITKGNVTIKVWDIGGQPRFRSM------WERYC--RGVN 90 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~--~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~------~~~~~--~~ad 90 (329)
++|+++|.||||||||+|++++.+..... ..|+......+...+..+.+.|+||....... ...++ ++.|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 58999999999999999999998864332 34555555557777799999999996544322 22333 4667
Q ss_pred eeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEE
Q psy2970 91 AIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLG 170 (329)
Q Consensus 91 ~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVg 170 (329)
+++ .|+|.++. +.......++++ .++|+++++
T Consensus 81 ~ii-----------------------------------------~VvDa~~l---~r~l~l~~ql~e----~g~P~vvvl 112 (156)
T PF02421_consen 81 LII-----------------------------------------VVVDATNL---ERNLYLTLQLLE----LGIPVVVVL 112 (156)
T ss_dssp EEE-----------------------------------------EEEEGGGH---HHHHHHHHHHHH----TTSSEEEEE
T ss_pred EEE-----------------------------------------EECCCCCH---HHHHHHHHHHHH----cCCCEEEEE
Confidence 777 99999874 444455556654 479999999
Q ss_pred EcCCCCCh----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 171 NKRDLPNA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 171 NK~Dl~~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
||+|+... .+.+.+.+.+++|.+.+||+++...+++.+.+
T Consensus 113 N~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 113 NKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp ETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred eCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence 99999765 46889999999999999999988888887653
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-17 Score=160.21 Aligned_cols=149 Identities=21% Similarity=0.237 Sum_probs=105.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCceeeeEEEeeC-ceEEEEEEecCCCcc---------ccchHHHHh
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTVGFNMRKITK-GNVTIKVWDIGGQPR---------FRSMWERYC 86 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~--~~~~pTig~~~~~i~~-~~~~l~I~DtpG~e~---------~~~~~~~~~ 86 (329)
...+|+++|.+|||||||+|++++.++. ....+|.+...+.+.. ++.++.+|||||..+ |+..+ ..+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence 3489999999999999999999998753 2334566665555544 456899999999722 22222 246
Q ss_pred hccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcE
Q psy2970 87 RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPI 166 (329)
Q Consensus 87 ~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPI 166 (329)
.++|.++ +|+|++++.+++....+...+ +.....++|+
T Consensus 267 ~~ADlil-----------------------------------------~VvD~s~~~~~~~~~~~~~~L-~~l~~~~~pi 304 (351)
T TIGR03156 267 READLLL-----------------------------------------HVVDASDPDREEQIEAVEKVL-EELGAEDIPQ 304 (351)
T ss_pred HhCCEEE-----------------------------------------EEEECCCCchHHHHHHHHHHH-HHhccCCCCE
Confidence 7888888 999999998877665443322 3222357899
Q ss_pred EEEEEcCCCCChhhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 167 LVLGNKRDLPNALDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 167 iLVgNK~Dl~~~~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
++|+||+|+.+..+...... ...+++++||+++.+.+++++.+.
T Consensus 305 IlV~NK~Dl~~~~~v~~~~~-~~~~~i~iSAktg~GI~eL~~~I~ 348 (351)
T TIGR03156 305 LLVYNKIDLLDEPRIERLEE-GYPEAVFVSAKTGEGLDLLLEAIA 348 (351)
T ss_pred EEEEEeecCCChHhHHHHHh-CCCCEEEEEccCCCCHHHHHHHHH
Confidence 99999999976544333222 224689999999888888877664
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.6e-17 Score=152.17 Aligned_cols=143 Identities=17% Similarity=0.128 Sum_probs=100.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCceeeeEEEe-eCceEEEEEEecCCCccccc-h-------HHHHhhccc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTVGFNMRKI-TKGNVTIKVWDIGGQPRFRS-M-------WERYCRGVN 90 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~--~~~~pTig~~~~~i-~~~~~~l~I~DtpG~e~~~~-~-------~~~~~~~ad 90 (329)
+|+++|.+|||||||+|+++++++. ....+|+...+..+ ..++.++.+|||||...... + ...+++++|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 6899999999999999999998763 23344555444443 44556799999999754321 1 234567888
Q ss_pred eeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEE
Q psy2970 91 AIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLG 170 (329)
Q Consensus 91 ~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVg 170 (329)
+++ +|+|+++..+.+ ..+.+.+.. .+.|+++|+
T Consensus 82 vvl-----------------------------------------~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~ 114 (270)
T TIGR00436 82 LIL-----------------------------------------FVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTR 114 (270)
T ss_pred EEE-----------------------------------------EEEECCCCCchH---HHHHHHHHh---cCCCEEEEE
Confidence 888 999999876654 222223222 468999999
Q ss_pred EcCCCCChhh----HHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 171 NKRDLPNALD----EKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 171 NK~Dl~~~~e----~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
||+|+.+..+ ..++++..+. +++++||+++.+.+++++.+.
T Consensus 115 NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~ 160 (270)
T TIGR00436 115 NKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIE 160 (270)
T ss_pred ECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHH
Confidence 9999976533 2334444444 799999999888888876664
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >KOG0074|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-17 Score=144.19 Aligned_cols=133 Identities=33% Similarity=0.666 Sum_probs=120.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCce-EEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGN-VTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~-~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
..++++|+++|-.|+|||||++++.+.+.. ...||-|++..++..+. +.+.+||.+||...+..|..|+.++|++|
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~~-hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lI-- 90 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLI-- 90 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCChh-hccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEE--
Confidence 368899999999999999999999988764 56799999999986555 99999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
||+|.+|...|++....+-++++......+|+++.+||.|+
T Consensus 91 ---------------------------------------yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdl 131 (185)
T KOG0074|consen 91 ---------------------------------------YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDL 131 (185)
T ss_pred ---------------------------------------EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHH
Confidence 99999999999999999999999888889999999999999
Q ss_pred CChhhHHHHHHHhCCc
Q psy2970 176 PNALDEKELIDRIMID 191 (329)
Q Consensus 176 ~~~~e~~~l~~~~~~~ 191 (329)
..+...++.+.++++.
T Consensus 132 ltaa~~eeia~klnl~ 147 (185)
T KOG0074|consen 132 LTAAKVEEIALKLNLA 147 (185)
T ss_pred HhhcchHHHHHhcchh
Confidence 8887777888777754
|
|
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=155.77 Aligned_cols=150 Identities=21% Similarity=0.252 Sum_probs=106.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-CCC-CCceeeeEEEeeCce-EEEEEEecCCCccc----cchHHHH---hhccc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS-QDM-IPTVGFNMRKITKGN-VTIKVWDIGGQPRF----RSMWERY---CRGVN 90 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~-~~~-~pTig~~~~~i~~~~-~~l~I~DtpG~e~~----~~~~~~~---~~~ad 90 (329)
-.|+++|.||||||||++++++.+.. ..| .+|.......+...+ .++.+|||||.... ..+...+ ++.++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad 237 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 237 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence 47999999999999999999987542 122 233333333344334 78999999997532 2233334 34588
Q ss_pred eeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc---ccHHHHHHHHHHHHhC-CcCCCCcE
Q psy2970 91 AIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT---DKLEASRNELHALIEK-PQLIGIPI 166 (329)
Q Consensus 91 ~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~---~S~~~~~~~l~~i~~~-~~~~~iPI 166 (329)
+++ +|+|+++. ++++....|..++... ....+.|+
T Consensus 238 ~ll-----------------------------------------~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~ 276 (329)
T TIGR02729 238 VLL-----------------------------------------HLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPR 276 (329)
T ss_pred EEE-----------------------------------------EEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCE
Confidence 888 99999986 6777777777766543 22357899
Q ss_pred EEEEEcCCCCChhh----HHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 167 LVLGNKRDLPNALD----EKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 167 iLVgNK~Dl~~~~e----~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+||+||+|+.++.+ .++++++++.+++++||++...+++++..+.
T Consensus 277 IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~ 325 (329)
T TIGR02729 277 IVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTGEGLDELLYALA 325 (329)
T ss_pred EEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHH
Confidence 99999999977633 3445566678999999999887888776553
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-16 Score=137.42 Aligned_cols=144 Identities=22% Similarity=0.173 Sum_probs=104.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCC------------------ceeeeEEEeeCceEEEEEEecCCCccccchHH
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIP------------------TVGFNMRKITKGNVTIKVWDIGGQPRFRSMWE 83 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~p------------------Tig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~ 83 (329)
+|+++|.+|+|||||++++.+........+ |.......++.....+.+|||||+.++...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 489999999999999999998766543322 22233334555678899999999999888888
Q ss_pred HHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCC
Q psy2970 84 RYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIG 163 (329)
Q Consensus 84 ~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~ 163 (329)
.+++.+|+++ +|+|.++..+.. ...++..+.. .+
T Consensus 81 ~~~~~~d~~i-----------------------------------------~v~d~~~~~~~~-~~~~~~~~~~----~~ 114 (189)
T cd00881 81 RGLSVSDGAI-----------------------------------------LVVDANEGVQPQ-TREHLRIARE----GG 114 (189)
T ss_pred HHHHhcCEEE-----------------------------------------EEEECCCCCcHH-HHHHHHHHHH----CC
Confidence 9999999999 999998765432 2233333322 57
Q ss_pred CcEEEEEEcCCCCChhh-------HHHHHHH--------------hCCcEEEEeccchHHHHHHhhhhc
Q psy2970 164 IPILVLGNKRDLPNALD-------EKELIDR--------------IMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 164 iPIiLVgNK~Dl~~~~e-------~~~l~~~--------------~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.|+++|+||+|+..+.+ ..+..+. ...+++++||+.+.+.++++..+.
T Consensus 115 ~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~ 183 (189)
T cd00881 115 LPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIV 183 (189)
T ss_pred CCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHH
Confidence 89999999999976321 2222222 247799999999887777776553
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=161.62 Aligned_cols=143 Identities=15% Similarity=0.164 Sum_probs=105.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCC-ceeeeEEEeeCceEEEEEEecCCCccccch--------HHHHh
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQF--SQDMIP-TVGFNMRKITKGNVTIKVWDIGGQPRFRSM--------WERYC 86 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~--~~~~~p-Tig~~~~~i~~~~~~l~I~DtpG~e~~~~~--------~~~~~ 86 (329)
++.++|+++|.+|||||||+|++.+.+. ...... |.......+..++.++.+|||||.+.+... ...++
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 4568999999999999999999998764 222222 333333445566788999999998765432 22367
Q ss_pred hccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcE
Q psy2970 87 RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPI 166 (329)
Q Consensus 87 ~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPI 166 (329)
+++|+++ +|+|++++.+++....|. . ..+.|+
T Consensus 293 ~~aD~il-----------------------------------------~VvD~s~~~s~~~~~~l~-~------~~~~pi 324 (449)
T PRK05291 293 EEADLVL-----------------------------------------LVLDASEPLTEEDDEILE-E------LKDKPV 324 (449)
T ss_pred HhCCEEE-----------------------------------------EEecCCCCCChhHHHHHH-h------cCCCCc
Confidence 7889888 999999988777543332 2 356899
Q ss_pred EEEEEcCCCCChhhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 167 LVLGNKRDLPNALDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 167 iLVgNK~Dl~~~~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
++|+||+|+.+..... ...+.+++++||+++.+.+++++.+.
T Consensus 325 iiV~NK~DL~~~~~~~---~~~~~~~i~iSAktg~GI~~L~~~L~ 366 (449)
T PRK05291 325 IVVLNKADLTGEIDLE---EENGKPVIRISAKTGEGIDELREAIK 366 (449)
T ss_pred EEEEEhhhccccchhh---hccCCceEEEEeeCCCCHHHHHHHHH
Confidence 9999999997654332 44567899999999888888776664
|
|
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.7e-17 Score=146.78 Aligned_cols=118 Identities=23% Similarity=0.362 Sum_probs=94.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEee----CceEEEEEEecCCCccccchHHHHhhcc-ceeEeec
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKIT----KGNVTIKVWDIGGQPRFRSMWERYCRGV-NAIVWTG 96 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~----~~~~~l~I~DtpG~e~~~~~~~~~~~~a-d~iI~~~ 96 (329)
+|+++|++|||||||++++..+++...+.++ ..++..+. .+...+.+||+||+++++..+..+++.+ +++|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV--- 77 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIV--- 77 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEE---
Confidence 5899999999999999999998886554433 33333322 3467899999999999999998899998 9999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc-ccHHHHHHHHHHHHhCCc--CCCCcEEEEEEcC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT-DKLEASRNELHALIEKPQ--LIGIPILVLGNKR 173 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~-~S~~~~~~~l~~i~~~~~--~~~iPIiLVgNK~ 173 (329)
+|+|.++. +++.....++.+++.... ..++|+++++||+
T Consensus 78 --------------------------------------~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~ 119 (203)
T cd04105 78 --------------------------------------FVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQ 119 (203)
T ss_pred --------------------------------------EEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecch
Confidence 99999987 778888888877755322 2589999999999
Q ss_pred CCCChhhH
Q psy2970 174 DLPNALDE 181 (329)
Q Consensus 174 Dl~~~~e~ 181 (329)
|+..+...
T Consensus 120 Dl~~a~~~ 127 (203)
T cd04105 120 DLFTAKPA 127 (203)
T ss_pred hhcccCCH
Confidence 99775433
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.6e-16 Score=132.48 Aligned_cols=146 Identities=14% Similarity=0.170 Sum_probs=96.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCce-eeeEEEeeCceEEEEEEecCCCccccch-----------HHHH
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTV-GFNMRKITKGNVTIKVWDIGGQPRFRSM-----------WERY 85 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~--~~~~pTi-g~~~~~i~~~~~~l~I~DtpG~e~~~~~-----------~~~~ 85 (329)
.++|+++|.+|+|||||++++.+.... .....+. ......+..++..+.+|||||....... ....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 579999999999999999999987642 1222222 1211234445566889999997544210 1123
Q ss_pred hhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCc
Q psy2970 86 CRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIP 165 (329)
Q Consensus 86 ~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iP 165 (329)
++.+|+++ +|+|..++.+.... .++..+.. .+.|
T Consensus 82 ~~~~d~vi-----------------------------------------~v~d~~~~~~~~~~-~~~~~~~~----~~~~ 115 (174)
T cd01895 82 IERADVVL-----------------------------------------LVIDATEGITEQDL-RIAGLILE----EGKA 115 (174)
T ss_pred HhhcCeEE-----------------------------------------EEEeCCCCcchhHH-HHHHHHHh----cCCC
Confidence 45677777 99999988765443 23333322 4689
Q ss_pred EEEEEEcCCCCCh--hhH----HHHHHHhC----CcEEEEeccchHHHHHHhhhhc
Q psy2970 166 ILVLGNKRDLPNA--LDE----KELIDRIM----IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 166 IiLVgNK~Dl~~~--~e~----~~l~~~~~----~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+++++||+|+.+. .+. +.+.++++ .+++++||+++.+.+.+.+.+.
T Consensus 116 ~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 171 (174)
T cd01895 116 LVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAID 171 (174)
T ss_pred EEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHH
Confidence 9999999999765 332 23444443 6899999999887777776553
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.7e-17 Score=139.89 Aligned_cols=133 Identities=16% Similarity=0.192 Sum_probs=94.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchH----HHHhhccceeEeecc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMW----ERYCRGVNAIVWTGG 97 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~----~~~~~~ad~iI~~~~ 97 (329)
+|+++|.+|||||||+|++.+.... ..+|.+..+.. . .+|||||+...+..+ ...++++|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~~~v~~~~---~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il---- 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKTQAVEFND---K----GDIDTPGEYFSHPRWYHALITTLQDVDMLI---- 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--CccceEEEECC---C----CcccCCccccCCHHHHHHHHHHHhcCCEEE----
Confidence 7999999999999999998765421 23444443321 1 269999974333222 22367888888
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN 177 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~ 177 (329)
+|+|+++.+++. ..++.++ ..+.|+++++||+|+.+
T Consensus 70 -------------------------------------~v~d~~~~~s~~--~~~~~~~-----~~~~~ii~v~nK~Dl~~ 105 (158)
T PRK15467 70 -------------------------------------YVHGANDPESRL--PAGLLDI-----GVSKRQIAVISKTDMPD 105 (158)
T ss_pred -------------------------------------EEEeCCCccccc--CHHHHhc-----cCCCCeEEEEEccccCc
Confidence 999999887652 2343333 23679999999999965
Q ss_pred h--hhHHHHHHHhCC--cEEEEeccchHHHHHHhhhhc
Q psy2970 178 A--LDEKELIDRIMI--DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 178 ~--~e~~~l~~~~~~--~~~etSAk~~~~~~~~l~~i~ 211 (329)
. +...++.++.+. +++++||+++.+.++++..+.
T Consensus 106 ~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~ 143 (158)
T PRK15467 106 ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLA 143 (158)
T ss_pred ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHH
Confidence 4 445667777774 899999999888888887765
|
|
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.1e-16 Score=139.35 Aligned_cols=146 Identities=14% Similarity=0.111 Sum_probs=95.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC----CCCC-----CCCCceeeeEEEee--------------CceEEEEEEecCCCcc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG----QFSQ-----DMIPTVGFNMRKIT--------------KGNVTIKVWDIGGQPR 77 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~----~~~~-----~~~pTig~~~~~i~--------------~~~~~l~I~DtpG~e~ 77 (329)
++|+++|++|+|||||++++... .+.. ....|++..+..+. .+...+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 48999999999999999999872 1211 12345555444332 2367899999999865
Q ss_pred ccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHh
Q psy2970 78 FRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIE 157 (329)
Q Consensus 78 ~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~ 157 (329)
+..........+|+++ +|+|+++.........+. +..
T Consensus 81 ~~~~~~~~~~~~d~vi-----------------------------------------~VvD~~~~~~~~~~~~~~--~~~ 117 (192)
T cd01889 81 LIRTIIGGAQIIDLML-----------------------------------------LVVDATKGIQTQTAECLV--IGE 117 (192)
T ss_pred HHHHHHHHHhhCCEEE-----------------------------------------EEEECCCCccHHHHHHHH--HHH
Confidence 4332223345567888 999998754333322221 112
Q ss_pred CCcCCCCcEEEEEEcCCCCChhh----HHHHHH----H------hCCcEEEEeccchHHHHHHhhhhcC
Q psy2970 158 KPQLIGIPILVLGNKRDLPNALD----EKELID----R------IMIDFWITLTLLIRWCESFLHHFGS 212 (329)
Q Consensus 158 ~~~~~~iPIiLVgNK~Dl~~~~e----~~~l~~----~------~~~~~~etSAk~~~~~~~~l~~i~~ 212 (329)
. .+.|+++|+||+|+....+ .+++.+ . .+++++++||+++.+.+++++.+..
T Consensus 118 ~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~ 183 (192)
T cd01889 118 I---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNN 183 (192)
T ss_pred H---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHh
Confidence 1 3579999999999975421 222222 1 2578999999998888998877753
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.7e-16 Score=159.34 Aligned_cols=147 Identities=20% Similarity=0.169 Sum_probs=100.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcee--eeEEEeeCceEEEEEEecCCCcc--------ccchHHHHh
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVG--FNMRKITKGNVTIKVWDIGGQPR--------FRSMWERYC 86 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig--~~~~~i~~~~~~l~I~DtpG~e~--------~~~~~~~~~ 86 (329)
....+|+++|.+|||||||+|+++++... ....|+++ ..+..+...+..+.+|||||++. +..+...++
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 34469999999999999999999987642 22233333 23334455667789999999863 334456678
Q ss_pred hccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcE
Q psy2970 87 RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPI 166 (329)
Q Consensus 87 ~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPI 166 (329)
+++|+++ +|||+++..++.. ..+. +.+. ..++|+
T Consensus 116 ~~aD~il-----------------------------------------~VvD~~~~~s~~~-~~i~-~~l~---~~~~pi 149 (472)
T PRK03003 116 RTADAVL-----------------------------------------FVVDATVGATATD-EAVA-RVLR---RSGKPV 149 (472)
T ss_pred HhCCEEE-----------------------------------------EEEECCCCCCHHH-HHHH-HHHH---HcCCCE
Confidence 8999999 9999998765432 2222 2222 257899
Q ss_pred EEEEEcCCCCChh-hHHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 167 LVLGNKRDLPNAL-DEKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 167 iLVgNK~Dl~~~~-e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
++|+||+|+.... +..++. .++. ..+++||+++.+.+++++.+.
T Consensus 150 ilV~NK~Dl~~~~~~~~~~~-~~g~~~~~~iSA~~g~gi~eL~~~i~ 195 (472)
T PRK03003 150 ILAANKVDDERGEADAAALW-SLGLGEPHPVSALHGRGVGDLLDAVL 195 (472)
T ss_pred EEEEECccCCccchhhHHHH-hcCCCCeEEEEcCCCCCcHHHHHHHH
Confidence 9999999997542 222222 2333 357999999777777776553
|
|
| >KOG0072|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.9e-17 Score=141.41 Aligned_cols=162 Identities=28% Similarity=0.500 Sum_probs=136.9
Q ss_pred ChHHHHHHHHHHHhcCC-CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCcccc
Q psy2970 1 MFVLLNRILDWFKSLFW-KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR 79 (329)
Q Consensus 1 m~~~~~~~~~~~~~~~~-~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~ 79 (329)
|.+.++++| +.++- .++++|+++|--|+||||+..++.-++.. ...||+|.+...+..+++++++||+.|+-..+
T Consensus 1 m~~g~~s~f---~~L~g~e~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfnve~v~yKNLk~~vwdLggqtSir 76 (182)
T KOG0072|consen 1 MGGGFSSLF---KALQGPEREMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNVETVPYKNLKFQVWDLGGQTSIR 76 (182)
T ss_pred CCchHHHHH---HHhcCCccceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCccccccccccceeeEccCccccc
Confidence 445555554 55553 38999999999999999999999888875 45899999999999999999999999999999
Q ss_pred chHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC
Q psy2970 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP 159 (329)
Q Consensus 80 ~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~ 159 (329)
..|+-|+.+++++| ||+|.+|.+...-....+..+++..
T Consensus 77 PyWRcYy~dt~avI-----------------------------------------yVVDssd~dris~a~~el~~mL~E~ 115 (182)
T KOG0072|consen 77 PYWRCYYADTDAVI-----------------------------------------YVVDSSDRDRISIAGVELYSMLQEE 115 (182)
T ss_pred HHHHHHhcccceEE-----------------------------------------EEEeccchhhhhhhHHHHHHHhccH
Confidence 99999999999999 9999999999888889999999888
Q ss_pred cCCCCcEEEEEEcCCCCChhhHHHHHHHhC--------CcEEEEeccchHHHHHHh
Q psy2970 160 QLIGIPILVLGNKRDLPNALDEKELIDRIM--------IDFWITLTLLIRWCESFL 207 (329)
Q Consensus 160 ~~~~iPIiLVgNK~Dl~~~~e~~~l~~~~~--------~~~~etSAk~~~~~~~~l 207 (329)
...+..++|++||.|...+....+..+.++ ...+++||.++...+..+
T Consensus 116 eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~ 171 (182)
T KOG0072|consen 116 ELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAM 171 (182)
T ss_pred hhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHH
Confidence 888888999999999988754444444444 578999999976665544
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-15 Score=150.78 Aligned_cols=147 Identities=16% Similarity=0.211 Sum_probs=100.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCceeee-EEEeeCceEEEEEEecCCCccccchH-----------HH
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTVGFN-MRKITKGNVTIKVWDIGGQPRFRSMW-----------ER 84 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~--~~~~pTig~~-~~~i~~~~~~l~I~DtpG~e~~~~~~-----------~~ 84 (329)
+.++|+++|.+|||||||+|++++.+.. .....|+... ...+..++..+.+|||||..+..... ..
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 3489999999999999999999987632 2222233222 22344455688999999986554321 23
Q ss_pred HhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCC
Q psy2970 85 YCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGI 164 (329)
Q Consensus 85 ~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~i 164 (329)
+++.+|+++ +|+|+++..+..... ++..+.+ .+.
T Consensus 251 ~~~~ad~~i-----------------------------------------lV~D~~~~~~~~~~~-~~~~~~~----~~~ 284 (429)
T TIGR03594 251 AIERADVVL-----------------------------------------LVLDATEGITEQDLR-IAGLILE----AGK 284 (429)
T ss_pred HHHhCCEEE-----------------------------------------EEEECCCCccHHHHH-HHHHHHH----cCC
Confidence 577888888 999999876655442 3333322 468
Q ss_pred cEEEEEEcCCCC-ChhhHHH----HHHHh----CCcEEEEeccchHHHHHHhhhhc
Q psy2970 165 PILVLGNKRDLP-NALDEKE----LIDRI----MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 165 PIiLVgNK~Dl~-~~~e~~~----l~~~~----~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+++|+||+|+. +....++ +.+.+ .++++++||+++.+++++++.+.
T Consensus 285 ~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~ 340 (429)
T TIGR03594 285 ALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAID 340 (429)
T ss_pred cEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHH
Confidence 999999999997 3332222 22332 36899999999877777776654
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >KOG3883|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.2e-16 Score=136.26 Aligned_cols=153 Identities=15% Similarity=0.225 Sum_probs=126.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCceeeeEEE-e---eCceEEEEEEecCCCccc-cchHHHHhhccc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQF--SQDMIPTVGFNMRK-I---TKGNVTIKVWDIGGQPRF-RSMWERYCRGVN 90 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~--~~~~~pTig~~~~~-i---~~~~~~l~I~DtpG~e~~-~~~~~~~~~~ad 90 (329)
.+.+||+++|..+||||+++.++.-++. ...+.||+++.|.. + ++-.-.+.++||+|.... ..+-.+|+.-+|
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 4679999999999999999999986654 35677999887754 3 233457999999998777 556788999999
Q ss_pred eeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEE
Q psy2970 91 AIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLG 170 (329)
Q Consensus 91 ~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVg 170 (329)
+++ +|||..|++||+.+..+-.+|-....+..+||+|++
T Consensus 87 afV-----------------------------------------LVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLa 125 (198)
T KOG3883|consen 87 AFV-----------------------------------------LVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLA 125 (198)
T ss_pred eEE-----------------------------------------EEecCCCHHHHHHHHHHHHHHhhccccccccEEEEe
Confidence 999 999999999999988776666666667889999999
Q ss_pred EcCCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 171 NKRDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 171 NK~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
||+|+.++ +.++.+++.-.+..||++|.....+-+++..+.
T Consensus 126 N~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf~~l~ 171 (198)
T KOG3883|consen 126 NKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPFTYLA 171 (198)
T ss_pred chhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHHHHHH
Confidence 99999765 457889999999999999999777777776664
|
|
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.2e-16 Score=129.03 Aligned_cols=147 Identities=19% Similarity=0.200 Sum_probs=98.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCC--CCCCceeeeEE-EeeCceEEEEEEecCCCccccch--------HHHHhh
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQ--DMIPTVGFNMR-KITKGNVTIKVWDIGGQPRFRSM--------WERYCR 87 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~--~~~pTig~~~~-~i~~~~~~l~I~DtpG~e~~~~~--------~~~~~~ 87 (329)
...+|+++|++|+|||||++++.+.++.. ...++...... ........+.+|||||....... ....+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999876531 11222222222 24455678999999997654332 233466
Q ss_pred ccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEE
Q psy2970 88 GVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPIL 167 (329)
Q Consensus 88 ~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIi 167 (329)
.+|+++ +|+|.+++. .....++.+.+.. .+.|++
T Consensus 82 ~~d~i~-----------------------------------------~v~d~~~~~--~~~~~~~~~~~~~---~~~~~i 115 (168)
T cd04163 82 DVDLVL-----------------------------------------FVVDASEPI--GEGDEFILELLKK---SKTPVI 115 (168)
T ss_pred hCCEEE-----------------------------------------EEEECCCcc--CchHHHHHHHHHH---hCCCEE
Confidence 777777 999999872 2222233333222 368999
Q ss_pred EEEEcCCCCC-hhh----HHHHHHHhC-CcEEEEeccchHHHHHHhhhhc
Q psy2970 168 VLGNKRDLPN-ALD----EKELIDRIM-IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 168 LVgNK~Dl~~-~~e----~~~l~~~~~-~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+||+|+.. ..+ .+.+....+ .+++++|++.....+++++.+.
T Consensus 116 iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~ 165 (168)
T cd04163 116 LVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIV 165 (168)
T ss_pred EEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHH
Confidence 9999999983 333 333444443 6899999999888888876654
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.4e-16 Score=155.11 Aligned_cols=149 Identities=21% Similarity=0.273 Sum_probs=108.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCceeeeEEEeeCc-eEEEEEEecCCCcc----ccchHHHHh---hccce
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTVGFNMRKITKG-NVTIKVWDIGGQPR----FRSMWERYC---RGVNA 91 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~--~~~~pTig~~~~~i~~~-~~~l~I~DtpG~e~----~~~~~~~~~---~~ad~ 91 (329)
.|+++|.||||||||++++++.+.. ....+|...++..+... ...+.+|||||... ...+...++ +.+++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~l 239 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRV 239 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCE
Confidence 7999999999999999999987643 22234555555545444 67899999999743 222334443 45788
Q ss_pred eEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc---ccHHHHHHHHHHHHhC-CcCCCCcEE
Q psy2970 92 IVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT---DKLEASRNELHALIEK-PQLIGIPIL 167 (329)
Q Consensus 92 iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~---~S~~~~~~~l~~i~~~-~~~~~iPIi 167 (329)
++ +|+|+++. +.++....|..++... ....+.|++
T Consensus 240 lI-----------------------------------------~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~I 278 (424)
T PRK12297 240 IV-----------------------------------------HVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQI 278 (424)
T ss_pred EE-----------------------------------------EEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEE
Confidence 88 99999865 5677777766666543 223578999
Q ss_pred EEEEcCCCCCh-hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 168 VLGNKRDLPNA-LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 168 LVgNK~Dl~~~-~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
||+||+|+.+. ...+++++.++.+++++||++....+++++.+.
T Consensus 279 VV~NK~DL~~~~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~ 323 (424)
T PRK12297 279 VVANKMDLPEAEENLEEFKEKLGPKVFPISALTGQGLDELLYAVA 323 (424)
T ss_pred EEEeCCCCcCCHHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHH
Confidence 99999999654 346778888888899999999777777776653
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.4e-16 Score=135.29 Aligned_cols=155 Identities=15% Similarity=0.179 Sum_probs=98.6
Q ss_pred HhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeE--EEeeCceEEEEEEecCCCc----------cccc
Q psy2970 13 KSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNM--RKITKGNVTIKVWDIGGQP----------RFRS 80 (329)
Q Consensus 13 ~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~--~~i~~~~~~l~I~DtpG~e----------~~~~ 80 (329)
+..+.....+|+++|.+|||||||++++.++++...+.++.+... .... .+..+.+|||||.. .+..
T Consensus 17 ~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~~~~~~ 95 (196)
T PRK00454 17 EQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE-VNDKLRLVDLPGYGYAKVSKEEKEKWQK 95 (196)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe-cCCeEEEeCCCCCCCcCCCchHHHHHHH
Confidence 344455678999999999999999999999875444444444221 1122 23678999999953 2333
Q ss_pred hHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc
Q psy2970 81 MWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ 160 (329)
Q Consensus 81 ~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~ 160 (329)
+...+++.++.+. ++++++|.+++.+... .++.+.++
T Consensus 96 ~~~~~~~~~~~~~--------------------------------------~~~~v~d~~~~~~~~~--~~i~~~l~--- 132 (196)
T PRK00454 96 LIEEYLRTRENLK--------------------------------------GVVLLIDSRHPLKELD--LQMIEWLK--- 132 (196)
T ss_pred HHHHHHHhCccce--------------------------------------EEEEEEecCCCCCHHH--HHHHHHHH---
Confidence 3344555443211 2228889877544322 22222322
Q ss_pred CCCCcEEEEEEcCCCCChhhHH----HHHHH---hCCcEEEEeccchHHHHHHhhhhc
Q psy2970 161 LIGIPILVLGNKRDLPNALDEK----ELIDR---IMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 161 ~~~iPIiLVgNK~Dl~~~~e~~----~l~~~---~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
..+.|+++++||+|+.+..+.+ ++.+. ...+++++||++....+++++.+.
T Consensus 133 ~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~ 190 (196)
T PRK00454 133 EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIA 190 (196)
T ss_pred HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHH
Confidence 2468999999999997653222 22222 257899999999888888887664
|
|
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.8e-16 Score=156.39 Aligned_cols=148 Identities=21% Similarity=0.231 Sum_probs=102.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCceeeeE--EEeeCceEEEEEEecCCCcc----------ccchH-HH
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVGFNM--RKITKGNVTIKVWDIGGQPR----------FRSMW-ER 84 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig~~~--~~i~~~~~~l~I~DtpG~e~----------~~~~~-~~ 84 (329)
...||+++|.+|||||||+|++++.+.. ....|+++.+. ..+..++..+.+|||||..+ +..+. ..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 3589999999999999999999988652 22233333322 23444556778999999632 22222 23
Q ss_pred HhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCC
Q psy2970 85 YCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGI 164 (329)
Q Consensus 85 ~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~i 164 (329)
+++++|+++ +|+|+++..+++... ++..+.+ .+.
T Consensus 290 ~i~~ad~vi-----------------------------------------lV~Da~~~~s~~~~~-~~~~~~~----~~~ 323 (472)
T PRK03003 290 AIEAAEVAV-----------------------------------------VLIDASEPISEQDQR-VLSMVIE----AGR 323 (472)
T ss_pred HHhcCCEEE-----------------------------------------EEEeCCCCCCHHHHH-HHHHHHH----cCC
Confidence 567888888 999999988877663 3444432 578
Q ss_pred cEEEEEEcCCCCChhh----HHHHHHHh----CCcEEEEeccchHHHHHHhhhhcC
Q psy2970 165 PILVLGNKRDLPNALD----EKELIDRI----MIDFWITLTLLIRWCESFLHHFGS 212 (329)
Q Consensus 165 PIiLVgNK~Dl~~~~e----~~~l~~~~----~~~~~etSAk~~~~~~~~l~~i~~ 212 (329)
|+++|+||+|+.+... .+++.+.+ ..+++++||+++.+++++++.+..
T Consensus 324 piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~ 379 (472)
T PRK03003 324 ALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALET 379 (472)
T ss_pred CEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999976421 12232222 368999999998888888877753
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.1e-16 Score=153.20 Aligned_cols=144 Identities=19% Similarity=0.163 Sum_probs=99.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCC-ceeeeEEEeeCceEEEEEEecCCCcc--------ccchHHHHhhcc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS--QDMIP-TVGFNMRKITKGNVTIKVWDIGGQPR--------FRSMWERYCRGV 89 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~--~~~~p-Tig~~~~~i~~~~~~l~I~DtpG~e~--------~~~~~~~~~~~a 89 (329)
.+|+++|.+|||||||+|++.+++.. ..+.. |....+..+..++..+.+|||||++. +......+++++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 48999999999999999999987642 22222 22333444555668899999999987 233345677889
Q ss_pred ceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEE
Q psy2970 90 NAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVL 169 (329)
Q Consensus 90 d~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLV 169 (329)
|+++ +|+|.++..+... .++.+.+.. .+.|+++|
T Consensus 82 d~il-----------------------------------------~vvd~~~~~~~~~--~~~~~~l~~---~~~piilv 115 (435)
T PRK00093 82 DVIL-----------------------------------------FVVDGRAGLTPAD--EEIAKILRK---SNKPVILV 115 (435)
T ss_pred CEEE-----------------------------------------EEEECCCCCCHHH--HHHHHHHHH---cCCcEEEE
Confidence 9999 9999987533221 122222222 36899999
Q ss_pred EEcCCCCCh-hhHHHHHHHhCCc-EEEEeccchHHHHHHhhhhc
Q psy2970 170 GNKRDLPNA-LDEKELIDRIMID-FWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 170 gNK~Dl~~~-~e~~~l~~~~~~~-~~etSAk~~~~~~~~l~~i~ 211 (329)
+||+|+.+. ....++ .+++.. ++++||+++.+.+.+++.+.
T Consensus 116 ~NK~D~~~~~~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~ 158 (435)
T PRK00093 116 VNKVDGPDEEADAYEF-YSLGLGEPYPISAEHGRGIGDLLDAIL 158 (435)
T ss_pred EECccCccchhhHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHH
Confidence 999998663 233333 355664 89999999777777776664
|
|
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.3e-16 Score=154.41 Aligned_cols=149 Identities=20% Similarity=0.175 Sum_probs=100.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCceeeeEEEeeCce-EEEEEEecCCCccc--cchHHH------Hhhcc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTVGFNMRKITKGN-VTIKVWDIGGQPRF--RSMWER------YCRGV 89 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~--~~~~pTig~~~~~i~~~~-~~l~I~DtpG~e~~--~~~~~~------~~~~a 89 (329)
.+|+++|.+|||||||+|++++.++. .....|.....+.+...+ ..+.+|||||..+. ..++.. .++++
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 58999999999999999999987653 223345544444444333 37789999998442 223322 35778
Q ss_pred ceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEE
Q psy2970 90 NAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVL 169 (329)
Q Consensus 90 d~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLV 169 (329)
|+++ +|+|++++.+++....+..-+ ......++|+++|
T Consensus 278 DlIL-----------------------------------------~VvDaS~~~~~e~l~~v~~iL-~el~~~~~pvIiV 315 (426)
T PRK11058 278 TLLL-----------------------------------------HVVDAADVRVQENIEAVNTVL-EEIDAHEIPTLLV 315 (426)
T ss_pred CEEE-----------------------------------------EEEeCCCccHHHHHHHHHHHH-HHhccCCCCEEEE
Confidence 8888 999999998777664332222 2212347899999
Q ss_pred EEcCCCCChhhHHHHHHHhCCc-EEEEeccchHHHHHHhhhhc
Q psy2970 170 GNKRDLPNALDEKELIDRIMID-FWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 170 gNK~Dl~~~~e~~~l~~~~~~~-~~etSAk~~~~~~~~l~~i~ 211 (329)
+||+|+.+......-..+.+.+ ++++||+++.+.+.+++.+.
T Consensus 316 ~NKiDL~~~~~~~~~~~~~~~~~~v~ISAktG~GIdeL~e~I~ 358 (426)
T PRK11058 316 MNKIDMLDDFEPRIDRDEENKPIRVWLSAQTGAGIPLLFQALT 358 (426)
T ss_pred EEcccCCCchhHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHH
Confidence 9999997542211111234555 58999999888888887765
|
|
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-15 Score=134.65 Aligned_cols=139 Identities=17% Similarity=0.209 Sum_probs=88.7
Q ss_pred cCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCce----eeeEEEeeCceEEEEEEecCCCcc----------ccc
Q psy2970 15 LFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTV----GFNMRKITKGNVTIKVWDIGGQPR----------FRS 80 (329)
Q Consensus 15 ~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTi----g~~~~~i~~~~~~l~I~DtpG~e~----------~~~ 80 (329)
....+..+|+++|++|||||||+|++.+..+...+.++. ...+...+ -.+.+|||||... +..
T Consensus 13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpG~~~~~~~~~~~~~~~~ 89 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN---DGFRLVDLPGYGYAKVSKEEKEKWQK 89 (179)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC---CcEEEEeCCCCccccCChhHHHHHHH
Confidence 335678999999999999999999999886433333333 33333332 2689999999532 222
Q ss_pred hHHHHhhc---cceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHh
Q psy2970 81 MWERYCRG---VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIE 157 (329)
Q Consensus 81 ~~~~~~~~---ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~ 157 (329)
+...+++. +++++ +|+|.+++-+.... ..+ +.+.
T Consensus 90 ~~~~~l~~~~~~~~ii-----------------------------------------~vvd~~~~~~~~~~-~~~-~~~~ 126 (179)
T TIGR03598 90 LIEEYLEKRENLKGVV-----------------------------------------LLMDIRHPLKELDL-EML-EWLR 126 (179)
T ss_pred HHHHHHHhChhhcEEE-----------------------------------------EEecCCCCCCHHHH-HHH-HHHH
Confidence 33344443 35666 99999875443333 222 2333
Q ss_pred CCcCCCCcEEEEEEcCCCCChh----hHHHHHHHhC-----CcEEEEeccchHH
Q psy2970 158 KPQLIGIPILVLGNKRDLPNAL----DEKELIDRIM-----IDFWITLTLLIRW 202 (329)
Q Consensus 158 ~~~~~~iPIiLVgNK~Dl~~~~----e~~~l~~~~~-----~~~~etSAk~~~~ 202 (329)
. .+.|+++|+||+|+.++. ..+++.+.++ .+++++||+++.+
T Consensus 127 ~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~g 177 (179)
T TIGR03598 127 E---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTG 177 (179)
T ss_pred H---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCC
Confidence 2 478999999999997642 1233333333 3799999998543
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >KOG0096|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.4e-17 Score=144.30 Aligned_cols=143 Identities=22% Similarity=0.349 Sum_probs=123.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEe----eCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i----~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
-+|++++|+.|.||||++++...++|...+.+|+|...... +.+.+++..|||+|+|.+..+.+.|+-.+.+.|
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi-- 87 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI-- 87 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE--
Confidence 58999999999999999999999999999999999988763 334589999999999999999888888888888
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
++||++..-++.++..|.+++.... .++||+++|||.|.
T Consensus 88 ---------------------------------------imFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi 126 (216)
T KOG0096|consen 88 ---------------------------------------IMFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDI 126 (216)
T ss_pred ---------------------------------------EEeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceec
Confidence 9999999999999999999998763 56999999999999
Q ss_pred CChh---hHHHHHHHhCCcEEEEeccchHHHHH
Q psy2970 176 PNAL---DEKELIDRIMIDFWITLTLLIRWCES 205 (329)
Q Consensus 176 ~~~~---e~~~l~~~~~~~~~etSAk~~~~~~~ 205 (329)
.+.. ..-.+-++.+++|++.||++.-+.+.
T Consensus 127 ~~r~~k~k~v~~~rkknl~y~~iSaksn~Nfek 159 (216)
T KOG0096|consen 127 KARKVKAKPVSFHRKKNLQYYEISAKSNYNFER 159 (216)
T ss_pred cccccccccceeeecccceeEEeeccccccccc
Confidence 8764 23345667789999999999555444
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-15 Score=151.31 Aligned_cols=144 Identities=19% Similarity=0.167 Sum_probs=99.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC--CCCCC-ceeeeEEEeeCceEEEEEEecCCCc--------cccchHHHHhhccc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFS--QDMIP-TVGFNMRKITKGNVTIKVWDIGGQP--------RFRSMWERYCRGVN 90 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~--~~~~p-Tig~~~~~i~~~~~~l~I~DtpG~e--------~~~~~~~~~~~~ad 90 (329)
+|+++|.+|||||||+|++.+++.. ..+.. |....+..+..++..+.+|||||.. .+..+...+++++|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 5899999999999999999987642 22222 2233344556667789999999963 33344566778888
Q ss_pred eeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEE
Q psy2970 91 AIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLG 170 (329)
Q Consensus 91 ~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVg 170 (329)
+++ +|+|..+..+... ..+.+.++. .+.|+++|+
T Consensus 81 ~vl-----------------------------------------~vvD~~~~~~~~d--~~i~~~l~~---~~~piilVv 114 (429)
T TIGR03594 81 VIL-----------------------------------------FVVDGREGLTPED--EEIAKWLRK---SGKPVILVA 114 (429)
T ss_pred EEE-----------------------------------------EEEeCCCCCCHHH--HHHHHHHHH---hCCCEEEEE
Confidence 888 9999987533222 222223222 468999999
Q ss_pred EcCCCCChhhHHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 171 NKRDLPNALDEKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 171 NK~Dl~~~~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
||+|+.+......-..+++. +++++||+++...+++++.+.
T Consensus 115 NK~D~~~~~~~~~~~~~lg~~~~~~vSa~~g~gv~~ll~~i~ 156 (429)
T TIGR03594 115 NKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRGIGDLLDAIL 156 (429)
T ss_pred ECccCCcccccHHHHHhcCCCCeEEEeCCcCCChHHHHHHHH
Confidence 99999765332222345676 799999999777777776653
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-15 Score=153.87 Aligned_cols=150 Identities=19% Similarity=0.201 Sum_probs=102.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCC-CC-CCCceeeeEEEeeCceEEEEEEecCCCccc----cchH---HHHhhccc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFS-QD-MIPTVGFNMRKITKGNVTIKVWDIGGQPRF----RSMW---ERYCRGVN 90 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~-~~-~~pTig~~~~~i~~~~~~l~I~DtpG~e~~----~~~~---~~~~~~ad 90 (329)
-.+|+|+|.||||||||+|+|++.+.. .. ..+|+......++.++.++.+|||||.... ..+. -..++.++
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhierad 238 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCA 238 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcC
Confidence 358999999999999999999987653 22 335556666667777789999999996422 1121 22355678
Q ss_pred eeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc----ccHHHHHHHHHHHHhCC-------
Q psy2970 91 AIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT----DKLEASRNELHALIEKP------- 159 (329)
Q Consensus 91 ~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~----~S~~~~~~~l~~i~~~~------- 159 (329)
+++ +|+|+++. +.++....+..++....
T Consensus 239 vLv-----------------------------------------~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~ 277 (500)
T PRK12296 239 VLV-----------------------------------------HVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDL 277 (500)
T ss_pred EEE-----------------------------------------EEECCcccccccCchhhHHHHHHHHHHhhhcccccc
Confidence 888 99999853 34444444444443221
Q ss_pred ---cCCCCcEEEEEEcCCCCChhhHH----HHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 160 ---QLIGIPILVLGNKRDLPNALDEK----ELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 160 ---~~~~iPIiLVgNK~Dl~~~~e~~----~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
...+.|++||+||+|+++..+.. +..++.+.+++++||++...+++++..+
T Consensus 278 ~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L 335 (500)
T PRK12296 278 GLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWPVFEVSAASREGLRELSFAL 335 (500)
T ss_pred hhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 23578999999999998653322 2223447899999999977777766554
|
|
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.9e-15 Score=160.04 Aligned_cols=145 Identities=20% Similarity=0.251 Sum_probs=107.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCC--ceeeeEEEeeCceEEEEEEecCCCccccch----------HHHHh
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIP--TVGFNMRKITKGNVTIKVWDIGGQPRFRSM----------WERYC 86 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~p--Tig~~~~~i~~~~~~l~I~DtpG~e~~~~~----------~~~~~ 86 (329)
++++|+++|.||||||||+|++++.+......| |++.....++.++.++.++||||..++... ...++
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 468999999999999999999998765422223 443334456778889999999998876432 12232
Q ss_pred --hccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCC
Q psy2970 87 --RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGI 164 (329)
Q Consensus 87 --~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~i 164 (329)
+++|.++ +|+|.++.++- ..+..++.+ .++
T Consensus 82 ~~~~aD~vI-----------------------------------------~VvDat~ler~---l~l~~ql~e----~gi 113 (772)
T PRK09554 82 LSGDADLLI-----------------------------------------NVVDASNLERN---LYLTLQLLE----LGI 113 (772)
T ss_pred hccCCCEEE-----------------------------------------EEecCCcchhh---HHHHHHHHH----cCC
Confidence 2567777 99999886542 334444433 468
Q ss_pred cEEEEEEcCCCCCh----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 165 PILVLGNKRDLPNA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 165 PIiLVgNK~Dl~~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+++|+||+|+.++ .+.+++.++++++++++||+++++.+++.+.+.
T Consensus 114 PvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~ 164 (772)
T PRK09554 114 PCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIEALKLAID 164 (772)
T ss_pred CEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHH
Confidence 99999999998743 457788999999999999999888888777664
|
|
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-15 Score=158.23 Aligned_cols=137 Identities=22% Similarity=0.262 Sum_probs=102.2
Q ss_pred cCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--EeeCceEEEEEEecCCCccccch------HHHHhh--ccceeEeec
Q psy2970 27 GLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--KITKGNVTIKVWDIGGQPRFRSM------WERYCR--GVNAIVWTG 96 (329)
Q Consensus 27 G~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~i~~~~~~l~I~DtpG~e~~~~~------~~~~~~--~ad~iI~~~ 96 (329)
|++|||||||+|++++++......|+++.+.. .++.++.++++|||||++++... ...++. ++|.++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI--- 77 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVV--- 77 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEE---
Confidence 89999999999999998775445555555443 45556678899999999887653 233333 567777
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|+|.++.+ ....+..++.+ .++|+++|+||+|+.
T Consensus 78 --------------------------------------~VvDat~le---r~l~l~~ql~~----~~~PiIIVlNK~Dl~ 112 (591)
T TIGR00437 78 --------------------------------------NVVDASNLE---RNLYLTLQLLE----LGIPMILALNLVDEA 112 (591)
T ss_pred --------------------------------------EEecCCcch---hhHHHHHHHHh----cCCCEEEEEehhHHH
Confidence 999998744 33344444433 468999999999996
Q ss_pred Ch----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 177 NA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 177 ~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
++ .+.++++++++++++++||+++++.+++++.+.
T Consensus 113 ~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 113 EKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred HhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 54 356788999999999999999888888887664
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.5e-15 Score=139.91 Aligned_cols=147 Identities=18% Similarity=0.232 Sum_probs=99.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCceeeeEEEe-eCceEEEEEEecCCCccccc--------hHHHHhh
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTVGFNMRKI-TKGNVTIKVWDIGGQPRFRS--------MWERYCR 87 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~--~~~~pTig~~~~~i-~~~~~~l~I~DtpG~e~~~~--------~~~~~~~ 87 (329)
+...|+++|++|||||||+|++++.++. .....|+......+ ..++.++.++||||...... .....+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 4567999999999999999999998763 22334444444433 34558899999999755432 1223456
Q ss_pred ccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEE
Q psy2970 88 GVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPIL 167 (329)
Q Consensus 88 ~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIi 167 (329)
++|+++ +|+|+++. +.....++.+.+. ..+.|++
T Consensus 84 ~~D~il-----------------------------------------~vvd~~~~--~~~~~~~i~~~l~---~~~~pvi 117 (292)
T PRK00089 84 DVDLVL-----------------------------------------FVVDADEK--IGPGDEFILEKLK---KVKTPVI 117 (292)
T ss_pred cCCEEE-----------------------------------------EEEeCCCC--CChhHHHHHHHHh---hcCCCEE
Confidence 778777 99999883 2222233333333 2468999
Q ss_pred EEEEcCCCC-Chhh----HHHHHHHhC-CcEEEEeccchHHHHHHhhhhc
Q psy2970 168 VLGNKRDLP-NALD----EKELIDRIM-IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 168 LVgNK~Dl~-~~~e----~~~l~~~~~-~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+||+|+. +..+ .+.+.+..+ .+++++||+++.+.+++++.+.
T Consensus 118 lVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~ 167 (292)
T PRK00089 118 LVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIA 167 (292)
T ss_pred EEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999998 4333 334444444 5799999999877777776653
|
|
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.9e-15 Score=155.10 Aligned_cols=145 Identities=20% Similarity=0.238 Sum_probs=107.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC-------CCCCCCCc------eeeeEE----Ee-----eCceEEEEEEecCCCccc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQ-------FSQDMIPT------VGFNMR----KI-----TKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~-------~~~~~~pT------ig~~~~----~i-----~~~~~~l~I~DtpG~e~~ 78 (329)
-+|+++|..++|||||+++|.... +...+..+ .|..+. .+ +++.+.+++|||||+++|
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 379999999999999999998642 22222211 132222 12 345689999999999999
Q ss_pred cchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC
Q psy2970 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK 158 (329)
Q Consensus 79 ~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~ 158 (329)
...+..+++.+|+++ +|+|+++..+.+....|.... +
T Consensus 84 ~~~v~~~l~~aD~aI-----------------------------------------LVvDat~g~~~qt~~~~~~~~-~- 120 (595)
T TIGR01393 84 SYEVSRSLAACEGAL-----------------------------------------LLVDAAQGIEAQTLANVYLAL-E- 120 (595)
T ss_pred HHHHHHHHHhCCEEE-----------------------------------------EEecCCCCCCHhHHHHHHHHH-H-
Confidence 999999999999999 999999876666655554433 2
Q ss_pred CcCCCCcEEEEEEcCCCCCh---hhHHHHHHHhCCc---EEEEeccchHHHHHHhhhhc
Q psy2970 159 PQLIGIPILVLGNKRDLPNA---LDEKELIDRIMID---FWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 159 ~~~~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~~~---~~etSAk~~~~~~~~l~~i~ 211 (329)
.++|+++|+||+|+.+. ...+++++.++++ ++++||+++.+.+.+++.+.
T Consensus 121 ---~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~ 176 (595)
T TIGR01393 121 ---NDLEIIPVINKIDLPSADPERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIV 176 (595)
T ss_pred ---cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHH
Confidence 46899999999999754 2245677777764 89999999877777776653
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.4e-15 Score=122.80 Aligned_cols=141 Identities=20% Similarity=0.167 Sum_probs=96.5
Q ss_pred EEcCCCCCHHHHHHHHHcCCCC-CC-CCCcee-eeEEEeeCc-eEEEEEEecCCCccccc-------hHHHHhhccceeE
Q psy2970 25 LVGLQCSGKTTFVNVIASGQFS-QD-MIPTVG-FNMRKITKG-NVTIKVWDIGGQPRFRS-------MWERYCRGVNAIV 93 (329)
Q Consensus 25 llG~~gvGKSSLin~l~~~~~~-~~-~~pTig-~~~~~i~~~-~~~l~I~DtpG~e~~~~-------~~~~~~~~ad~iI 93 (329)
++|++|+|||||++++.+.... .. ..+++. ......... ...+.+|||||...... ....+++.+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 5899999999999999986554 22 222222 222222222 67899999999876643 3344677888888
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|+|.++........ +..... ..+.|+++|+||+
T Consensus 81 -----------------------------------------~v~~~~~~~~~~~~~-~~~~~~----~~~~~~ivv~nK~ 114 (163)
T cd00880 81 -----------------------------------------FVVDADLRADEEEEK-LLELLR----ERGKPVLLVLNKI 114 (163)
T ss_pred -----------------------------------------EEEeCCCCCCHHHHH-HHHHHH----hcCCeEEEEEEcc
Confidence 999999887665554 233332 3578999999999
Q ss_pred CCCChhhHHHH--------HHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNALDEKEL--------IDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~~e~~~l--------~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+....+.... ....+.+++++||++....+++++.+.
T Consensus 115 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~ 160 (163)
T cd00880 115 DLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALI 160 (163)
T ss_pred ccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHH
Confidence 99876443332 222347899999999877777776553
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-14 Score=144.25 Aligned_cols=148 Identities=20% Similarity=0.245 Sum_probs=101.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC-CCCC-CceeeeEEEeeCce-EEEEEEecCCCccccc----hH---HHHhhccce
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFS-QDMI-PTVGFNMRKITKGN-VTIKVWDIGGQPRFRS----MW---ERYCRGVNA 91 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~-~~~~-pTig~~~~~i~~~~-~~l~I~DtpG~e~~~~----~~---~~~~~~ad~ 91 (329)
.|.|+|.||||||||+|++++.+.. ..+. +|....+..+...+ ..+.++||||...-.. +. ...++.+++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radv 240 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRV 240 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCE
Confidence 7999999999999999999987643 2222 33344444444443 4689999999753211 11 234667788
Q ss_pred eEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECC---CcccHHHHHHHHHHHHhC-CcCCCCcEE
Q psy2970 92 IVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAA---DTDKLEASRNELHALIEK-PQLIGIPIL 167 (329)
Q Consensus 92 iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt---~~~S~~~~~~~l~~i~~~-~~~~~iPIi 167 (329)
++ +|+|++ +.+.++....++.++... ....+.|++
T Consensus 241 lL-----------------------------------------~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~I 279 (390)
T PRK12298 241 LL-----------------------------------------HLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRW 279 (390)
T ss_pred EE-----------------------------------------EEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEE
Confidence 88 999988 456677777777776543 223568999
Q ss_pred EEEEcCCCCChhh----HHHHHHHhC--CcEEEEeccchHHHHHHhhhh
Q psy2970 168 VLGNKRDLPNALD----EKELIDRIM--IDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 168 LVgNK~Dl~~~~e----~~~l~~~~~--~~~~etSAk~~~~~~~~l~~i 210 (329)
||+||+|+.+..+ .+++.++++ .+++.+||++....+++++.+
T Consensus 280 lVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I 328 (390)
T PRK12298 280 LVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDL 328 (390)
T ss_pred EEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHH
Confidence 9999999976533 334445544 478999999976677766555
|
|
| >KOG1673|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-15 Score=132.89 Aligned_cols=146 Identities=21% Similarity=0.363 Sum_probs=122.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
-.+||-++|++.+|||||+-.+.++++.+.+..|.|+++.. +.+.++.+.|||++|++++.++.+..+.++-+++
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl- 97 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAIL- 97 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEE-
Confidence 46899999999999999999999999988888999988753 5677889999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
++||++.++++..+.+|+++.... +..-+|| +||+|.|
T Consensus 98 ----------------------------------------FmFDLt~r~TLnSi~~WY~QAr~~-NktAiPi-lvGTKyD 135 (205)
T KOG1673|consen 98 ----------------------------------------FMFDLTRRSTLNSIKEWYRQARGL-NKTAIPI-LVGTKYD 135 (205)
T ss_pred ----------------------------------------EEEecCchHHHHHHHHHHHHHhcc-CCccceE-EeccchH
Confidence 999999999999999999998654 3455775 7899998
Q ss_pred CCC----h------hhHHHHHHHhCCcEEEEeccchHHHHHHh
Q psy2970 175 LPN----A------LDEKELIDRIMIDFWITLTLLIRWCESFL 207 (329)
Q Consensus 175 l~~----~------~e~~~l~~~~~~~~~etSAk~~~~~~~~l 207 (329)
+-- + .++..+++-++.+.+.+|+....+....+
T Consensus 136 ~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIF 178 (205)
T KOG1673|consen 136 LFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIF 178 (205)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHH
Confidence 632 2 34677888899999999998833333333
|
|
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-14 Score=151.25 Aligned_cols=148 Identities=20% Similarity=0.202 Sum_probs=104.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeee--EEEeeCce-EEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFN--MRKITKGN-VTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~--~~~i~~~~-~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
.+..+|+++|.+++|||||++++.+.++.....++++.. ...+..++ ..+.+|||||++.|..++...+..+|+++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaI- 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVV- 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEE-
Confidence 456899999999999999999999888765444433332 22333222 28899999999999999988899999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|+|+++... ....+.+... ...++|+++++||+|
T Consensus 164 ----------------------------------------LVVda~dgv~-~qT~e~i~~~----~~~~vPiIVviNKiD 198 (587)
T TIGR00487 164 ----------------------------------------LVVAADDGVM-PQTIEAISHA----KAANVPIIVAINKID 198 (587)
T ss_pred ----------------------------------------EEEECCCCCC-HhHHHHHHHH----HHcCCCEEEEEECcc
Confidence 9999886321 1222222222 135789999999999
Q ss_pred CCCh--hhHHHHHHHhC---------CcEEEEeccchHHHHHHhhhhc
Q psy2970 175 LPNA--LDEKELIDRIM---------IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 175 l~~~--~e~~~l~~~~~---------~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+++. ++..+..++++ .+++++||+++.+.+++++.+.
T Consensus 199 l~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~ 246 (587)
T TIGR00487 199 KPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMIL 246 (587)
T ss_pred cccCCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhh
Confidence 9753 23333333332 4699999999888888776653
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-14 Score=133.99 Aligned_cols=72 Identities=17% Similarity=0.209 Sum_probs=52.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC-CCC-CCceeeeEEEeeCceEEEEEEecCCCcccc----c---hHHHHhhcccee
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFS-QDM-IPTVGFNMRKITKGNVTIKVWDIGGQPRFR----S---MWERYCRGVNAI 92 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~-~~~-~pTig~~~~~i~~~~~~l~I~DtpG~e~~~----~---~~~~~~~~ad~i 92 (329)
+|+++|++|||||||++++.+.... ..+ .+|.......+..++..+++|||||+.... . .....++++|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 7899999999999999999987642 222 234444444455677899999999985432 1 234578889988
Q ss_pred E
Q psy2970 93 V 93 (329)
Q Consensus 93 I 93 (329)
+
T Consensus 82 l 82 (233)
T cd01896 82 L 82 (233)
T ss_pred E
Confidence 8
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-14 Score=142.67 Aligned_cols=147 Identities=16% Similarity=0.211 Sum_probs=99.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCC-ceeeeE-EEeeCceEEEEEEecCCCccccch-----------HHH
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQF-SQDMIP-TVGFNM-RKITKGNVTIKVWDIGGQPRFRSM-----------WER 84 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~-~~~~~p-Tig~~~-~~i~~~~~~l~I~DtpG~e~~~~~-----------~~~ 84 (329)
..++|+++|.+|||||||+|++++.+. .....+ |+.... ..+..++..+.+|||||..+.... ...
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~ 251 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK 251 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence 469999999999999999999997653 222222 322222 234456677899999997543221 123
Q ss_pred HhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCC
Q psy2970 85 YCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGI 164 (329)
Q Consensus 85 ~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~i 164 (329)
+++.+|+++ +|+|+++..+..... ++..+.+ .+.
T Consensus 252 ~~~~ad~~i-----------------------------------------lViD~~~~~~~~~~~-i~~~~~~----~~~ 285 (435)
T PRK00093 252 AIERADVVL-----------------------------------------LVIDATEGITEQDLR-IAGLALE----AGR 285 (435)
T ss_pred HHHHCCEEE-----------------------------------------EEEeCCCCCCHHHHH-HHHHHHH----cCC
Confidence 567788888 999999876654432 2333322 468
Q ss_pred cEEEEEEcCCCCChhhHHHH----HHHh----CCcEEEEeccchHHHHHHhhhhc
Q psy2970 165 PILVLGNKRDLPNALDEKEL----IDRI----MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 165 PIiLVgNK~Dl~~~~e~~~l----~~~~----~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+++|+||+|+.+..+.+++ .+.+ .++++++||+++..++++++.+.
T Consensus 286 ~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~ 340 (435)
T PRK00093 286 ALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAID 340 (435)
T ss_pred cEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999865333332 2222 37899999999888888776654
|
|
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-14 Score=130.17 Aligned_cols=147 Identities=13% Similarity=0.060 Sum_probs=94.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-----CCCCCceeeeEEEeeC---------------------------------
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS-----QDMIPTVGFNMRKITK--------------------------------- 62 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~-----~~~~pTig~~~~~i~~--------------------------------- 62 (329)
++|.++|..|+|||||+..+.+.... ....-|+...+..+..
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 47899999999999999999754211 0111122222111110
Q ss_pred ceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc
Q psy2970 63 GNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT 142 (329)
Q Consensus 63 ~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~ 142 (329)
...++.+|||||++++..........+|+++ +|+|++++
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~l-----------------------------------------lVvd~~~~ 119 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGAL-----------------------------------------LLIAANEP 119 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEE-----------------------------------------EEEECCCC
Confidence 1267899999999988776666777889999 99999874
Q ss_pred ccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhh----HHHHHHHh------CCcEEEEeccchHHHHHHhhhhc
Q psy2970 143 DKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD----EKELIDRI------MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 143 ~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e----~~~l~~~~------~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.........+..+... ...|+++|+||+|+.+..+ .+++.+.+ +.+++++||+++.+.+++++.+.
T Consensus 120 ~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~ 195 (203)
T cd01888 120 CPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIV 195 (203)
T ss_pred CCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHH
Confidence 2111112222222111 2257999999999986422 12232222 57899999999888888877664
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >KOG0077|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-15 Score=133.20 Aligned_cols=140 Identities=34% Similarity=0.671 Sum_probs=119.2
Q ss_pred HHHHHHhc-----CCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchH
Q psy2970 8 ILDWFKSL-----FWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMW 82 (329)
Q Consensus 8 ~~~~~~~~-----~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~ 82 (329)
+++||.+. +++|.-|++++|--|+|||||++.+.+++.. ++.||.-..-.++...+.+++.+|++|+..-+..|
T Consensus 3 l~ewF~~VLq~LgL~kK~gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~w 81 (193)
T KOG0077|consen 3 LFEWFSSVLQFLGLYKKFGKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVW 81 (193)
T ss_pred HHHHHHHHHHHHHHhccCceEEEEeecCCchhhHHHHHcccccc-ccCCCcCCChHHheecCceEEEEccccHHHHHHHH
Confidence 45555543 4899999999999999999999999888764 56777776666677888999999999998889999
Q ss_pred HHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCC
Q psy2970 83 ERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLI 162 (329)
Q Consensus 83 ~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~ 162 (329)
..|+..+|+++ +.+|+-|++.|.+.+..+..++......
T Consensus 82 kdyf~~v~~iv-----------------------------------------~lvda~d~er~~es~~eld~ll~~e~la 120 (193)
T KOG0077|consen 82 KDYFPQVDAIV-----------------------------------------YLVDAYDQERFAESKKELDALLSDESLA 120 (193)
T ss_pred HHHHhhhceeE-----------------------------------------eeeehhhHHHhHHHHHHHHHHHhHHHHh
Confidence 99999999999 9999999999999999999988876678
Q ss_pred CCcEEEEEEcCCCCChhhHHHHHHHhC
Q psy2970 163 GIPILVLGNKRDLPNALDEKELIDRIM 189 (329)
Q Consensus 163 ~iPIiLVgNK~Dl~~~~e~~~l~~~~~ 189 (329)
++|+++.+||+|.+.+...+++.-.++
T Consensus 121 ~vp~lilgnKId~p~a~se~~l~~~l~ 147 (193)
T KOG0077|consen 121 TVPFLILGNKIDIPYAASEDELRFHLG 147 (193)
T ss_pred cCcceeecccccCCCcccHHHHHHHHH
Confidence 999999999999998865555554443
|
|
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-14 Score=138.79 Aligned_cols=147 Identities=18% Similarity=0.200 Sum_probs=104.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCceeeeEEE-eeCceEEEEEEecCCCccccchH--------HHHhh
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTVGFNMRK-ITKGNVTIKVWDIGGQPRFRSMW--------ERYCR 87 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~--~~~~pTig~~~~~-i~~~~~~l~I~DtpG~e~~~~~~--------~~~~~ 87 (329)
+.--|+++|.||||||||+|++.+.+.. ....+|+...++. ++.++.++.+.||||.-.-+... ...+.
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~ 84 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALK 84 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence 4567999999999999999999999874 4456677777776 46778999999999965433322 33455
Q ss_pred ccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEE
Q psy2970 88 GVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPIL 167 (329)
Q Consensus 88 ~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIi 167 (329)
++|.++ +|+|.++... .-.+++.+.+.. .+.|++
T Consensus 85 dvDlil-----------------------------------------fvvd~~~~~~--~~d~~il~~lk~---~~~pvi 118 (298)
T COG1159 85 DVDLIL-----------------------------------------FVVDADEGWG--PGDEFILEQLKK---TKTPVI 118 (298)
T ss_pred cCcEEE-----------------------------------------EEEeccccCC--ccHHHHHHHHhh---cCCCeE
Confidence 677777 9999987432 222222233222 468999
Q ss_pred EEEEcCCCCChhh-HHHHHHHhC-----CcEEEEeccchHHHHHHhhhhc
Q psy2970 168 VLGNKRDLPNALD-EKELIDRIM-----IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 168 LVgNK~Dl~~~~e-~~~l~~~~~-----~~~~etSAk~~~~~~~~l~~i~ 211 (329)
++.||+|...... +..+.+.+. ...+++||+.+.+++.+.+.+.
T Consensus 119 l~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~ 168 (298)
T COG1159 119 LVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIK 168 (298)
T ss_pred EEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHH
Confidence 9999999877644 334443332 3589999999888888876664
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.3e-14 Score=152.10 Aligned_cols=146 Identities=14% Similarity=0.118 Sum_probs=99.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCceeeeE-EEeeCceEEEEEEecCCCccc----------cch-HHHH
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQF--SQDMIPTVGFNM-RKITKGNVTIKVWDIGGQPRF----------RSM-WERY 85 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~--~~~~~pTig~~~-~~i~~~~~~l~I~DtpG~e~~----------~~~-~~~~ 85 (329)
..||+++|.+|||||||+|++++.+. ...+.+|+...+ ..+..++..+.+|||||..+. ..+ ...+
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~ 529 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAA 529 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHH
Confidence 48999999999999999999998874 233333333222 223445556779999996421 111 1234
Q ss_pred hhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCc
Q psy2970 86 CRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIP 165 (329)
Q Consensus 86 ~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iP 165 (329)
++.+|+++ +|+|+++..+.+... ++..+.+ .+.|
T Consensus 530 i~~advvi-----------------------------------------lViDat~~~s~~~~~-i~~~~~~----~~~p 563 (712)
T PRK09518 530 IERSELAL-----------------------------------------FLFDASQPISEQDLK-VMSMAVD----AGRA 563 (712)
T ss_pred hhcCCEEE-----------------------------------------EEEECCCCCCHHHHH-HHHHHHH----cCCC
Confidence 67788888 999999887766654 3344432 4689
Q ss_pred EEEEEEcCCCCChhhHHHHH----HHh----CCcEEEEeccchHHHHHHhhhhc
Q psy2970 166 ILVLGNKRDLPNALDEKELI----DRI----MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 166 IiLVgNK~Dl~~~~e~~~l~----~~~----~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+++|+||+|+.+....+.+. ..+ ..+.+++||+++.+++++++.+.
T Consensus 564 iIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~ 617 (712)
T PRK09518 564 LVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQ 617 (712)
T ss_pred EEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 99999999997653333232 222 14568999999888888887664
|
|
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.4e-14 Score=148.83 Aligned_cols=141 Identities=20% Similarity=0.249 Sum_probs=101.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC---CCCCCCCC--ceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG---QFSQDMIP--TVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~---~~~~~~~p--Tig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
+.|+++|.+++|||||+++|++. .+...+.+ |+...+..++.++..+.+||+||+++|.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aI-- 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAAL-- 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEE--
Confidence 46899999999999999999963 33333333 444445556666689999999999998877777888999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCC---cccHHHHHHHHHHHHhCCcCCCCc-EEEEEE
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAAD---TDKLEASRNELHALIEKPQLIGIP-ILVLGN 171 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~---~~S~~~~~~~l~~i~~~~~~~~iP-IiLVgN 171 (329)
+|+|+++ +.+++.+. ++. ..++| ++||+|
T Consensus 79 ---------------------------------------LVVDa~~G~~~qT~ehl~-----il~---~lgi~~iIVVlN 111 (581)
T TIGR00475 79 ---------------------------------------LVVDADEGVMTQTGEHLA-----VLD---LLGIPHTIVVIT 111 (581)
T ss_pred ---------------------------------------EEEECCCCCcHHHHHHHH-----HHH---HcCCCeEEEEEE
Confidence 9999987 33333321 222 24677 999999
Q ss_pred cCCCCChh-------hHHHHHHHh----CCcEEEEeccchHHHHHHhhhh
Q psy2970 172 KRDLPNAL-------DEKELIDRI----MIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 172 K~Dl~~~~-------e~~~l~~~~----~~~~~etSAk~~~~~~~~l~~i 210 (329)
|+|+.+.. +.+++.+.+ +.+++++||+++.+.+++.+.+
T Consensus 112 K~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L 161 (581)
T TIGR00475 112 KADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKEL 161 (581)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHH
Confidence 99998753 233444444 4789999999976666665544
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.5e-14 Score=150.68 Aligned_cols=144 Identities=20% Similarity=0.224 Sum_probs=95.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCceeeeE--EEeeCceEEEEEEecCCCcc--------ccchHHHHhhcc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVGFNM--RKITKGNVTIKVWDIGGQPR--------FRSMWERYCRGV 89 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig~~~--~~i~~~~~~l~I~DtpG~e~--------~~~~~~~~~~~a 89 (329)
.+|+++|.+|||||||+|++++++.. ....|+++.+. .....++..+.+|||||.+. +......+++.+
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 355 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLA 355 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhC
Confidence 68999999999999999999987642 12233333322 23345567899999999764 233445577889
Q ss_pred ceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEE
Q psy2970 90 NAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVL 169 (329)
Q Consensus 90 d~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLV 169 (329)
|+++ +|+|+++. +......+.+.++. .++|+++|
T Consensus 356 D~iL-----------------------------------------~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV 389 (712)
T PRK09518 356 DAVV-----------------------------------------FVVDGQVG--LTSTDERIVRMLRR---AGKPVVLA 389 (712)
T ss_pred CEEE-----------------------------------------EEEECCCC--CCHHHHHHHHHHHh---cCCCEEEE
Confidence 9999 99999763 22222222333332 57899999
Q ss_pred EEcCCCCChh-hHHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 170 GNKRDLPNAL-DEKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 170 gNK~Dl~~~~-e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
+||+|+.+.. ...++. .++. ..+++||+++.+.+++++.+.
T Consensus 390 ~NK~D~~~~~~~~~~~~-~lg~~~~~~iSA~~g~GI~eLl~~i~ 432 (712)
T PRK09518 390 VNKIDDQASEYDAAEFW-KLGLGEPYPISAMHGRGVGDLLDEAL 432 (712)
T ss_pred EECcccccchhhHHHHH-HcCCCCeEEEECCCCCCchHHHHHHH
Confidence 9999986542 222222 2333 367999999777777776553
|
|
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-14 Score=127.94 Aligned_cols=148 Identities=22% Similarity=0.241 Sum_probs=104.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC--------------------CCCCCceeeeEEEee--CceEEEEEEecCCC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS--------------------QDMIPTVGFNMRKIT--KGNVTIKVWDIGGQ 75 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~--------------------~~~~pTig~~~~~i~--~~~~~l~I~DtpG~ 75 (329)
|+-.+|+++|..++|||||+.+|...... ....-|+......+. .....+.++||||+
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc
Confidence 35579999999999999999999853211 112234444455566 77889999999999
Q ss_pred ccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHH
Q psy2970 76 PRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHAL 155 (329)
Q Consensus 76 e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i 155 (329)
.+|........+.+|+++ +|+|+.+.-. ....+.+..+
T Consensus 81 ~~f~~~~~~~~~~~D~ai-----------------------------------------lvVda~~g~~-~~~~~~l~~~ 118 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAI-----------------------------------------LVVDANDGIQ-PQTEEHLKIL 118 (188)
T ss_dssp HHHHHHHHHHHTTSSEEE-----------------------------------------EEEETTTBST-HHHHHHHHHH
T ss_pred cceeecccceecccccce-----------------------------------------eeeecccccc-cccccccccc
Confidence 998887777888999999 9999986532 2233333333
Q ss_pred HhCCcCCCCcEEEEEEcCCCCCh---hhHH----HHHHHhC------CcEEEEeccchHHHHHHhhhhc
Q psy2970 156 IEKPQLIGIPILVLGNKRDLPNA---LDEK----ELIDRIM------IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 156 ~~~~~~~~iPIiLVgNK~Dl~~~---~e~~----~l~~~~~------~~~~etSAk~~~~~~~~l~~i~ 211 (329)
. ..++|+++|.||+|+... ...+ .+.+..+ ++++.+||+++.+.+.+++.+.
T Consensus 119 ~----~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~ 183 (188)
T PF00009_consen 119 R----ELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALV 183 (188)
T ss_dssp H----HTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHH
T ss_pred c----ccccceEEeeeeccchhhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHH
Confidence 2 257899999999999843 1122 2333332 4799999999888888887654
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.5e-14 Score=134.05 Aligned_cols=168 Identities=20% Similarity=0.172 Sum_probs=115.3
Q ss_pred HHHHHHHHHhcC--CCCceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCC-CceeeeEEEeeCceEEEEEEecCCCccccc
Q psy2970 5 LNRILDWFKSLF--WKEEMELTLVGLQCSGKTTFVNVIASGQFS-QDMI-PTVGFNMRKITKGNVTIKVWDIGGQPRFRS 80 (329)
Q Consensus 5 ~~~~~~~~~~~~--~~k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~-pTig~~~~~i~~~~~~l~I~DtpG~e~~~~ 80 (329)
+...-+.++.+- -..-..|++.|.||||||||++.+++.+.. ..|+ +|-++.+..+..+..++|+.||||..+.-
T Consensus 151 L~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRP- 229 (346)
T COG1084 151 LRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRP- 229 (346)
T ss_pred HHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCC-
Confidence 444444555442 224568999999999999999999998774 3444 55578888899999999999999975431
Q ss_pred hHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc--ccHHHHHHHHHHHHhC
Q psy2970 81 MWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT--DKLEASRNELHALIEK 158 (329)
Q Consensus 81 ~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~--~S~~~~~~~l~~i~~~ 158 (329)
+-+..--+ -|+.-|+.++..+++|+||.+.. -+.+....+++++...
T Consensus 230 l~ErN~IE-------------------------------~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~ 278 (346)
T COG1084 230 LEERNEIE-------------------------------RQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL 278 (346)
T ss_pred hHHhcHHH-------------------------------HHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh
Confidence 11111111 12333788999999999999865 4678899999999775
Q ss_pred CcCCCCcEEEEEEcCCCCChhhHHHHHHH---h-CCcEEEEeccchHHHHHHh
Q psy2970 159 PQLIGIPILVLGNKRDLPNALDEKELIDR---I-MIDFWITLTLLIRWCESFL 207 (329)
Q Consensus 159 ~~~~~iPIiLVgNK~Dl~~~~e~~~l~~~---~-~~~~~etSAk~~~~~~~~l 207 (329)
.+.|+++|.||+|+.+.+..++.... - +.....+++......+...
T Consensus 279 ---f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 328 (346)
T COG1084 279 ---FKAPIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKISATKGCGLDKLR 328 (346)
T ss_pred ---cCCCeEEEEecccccchhHHHHHHHHHHhhccccccceeeeehhhHHHHH
Confidence 23899999999999876444433322 2 3335556665544444433
|
|
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-14 Score=143.61 Aligned_cols=145 Identities=19% Similarity=0.146 Sum_probs=99.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHc--CCCC-------------------------------CCCCCceeeeEEEeeCc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIAS--GQFS-------------------------------QDMIPTVGFNMRKITKG 63 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~--~~~~-------------------------------~~~~pTig~~~~~i~~~ 63 (329)
.+..++|+++|..++|||||+.+|+. +.+. .....|+......+..+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 46789999999999999999999974 2111 01133444555567778
Q ss_pred eEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc
Q psy2970 64 NVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD 143 (329)
Q Consensus 64 ~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~ 143 (329)
+..+.+|||||+++|.......+..+|+++ +|+|+++.+
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~i-----------------------------------------lVvDa~~~~ 122 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAV-----------------------------------------LVVAVGDGE 122 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEE-----------------------------------------EEEECCCCC
Confidence 899999999999887655555678899999 999999875
Q ss_pred cHHHHH-HHHHHHHhCCcCCCCcEEEEEEcCCCCC--h-------hhHHHHHHHhC-----CcEEEEeccchHHHH
Q psy2970 144 KLEASR-NELHALIEKPQLIGIPILVLGNKRDLPN--A-------LDEKELIDRIM-----IDFWITLTLLIRWCE 204 (329)
Q Consensus 144 S~~~~~-~~l~~i~~~~~~~~iPIiLVgNK~Dl~~--~-------~e~~~l~~~~~-----~~~~etSAk~~~~~~ 204 (329)
++.... .+...+.+. ....|++||+||+|+.+ . .+.+++.++.+ ++++++||+++.+.+
T Consensus 123 ~~~~~~t~~~~~~~~~--~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~ 196 (426)
T TIGR00483 123 FEVQPQTREHAFLART--LGINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVI 196 (426)
T ss_pred cccCCchHHHHHHHHH--cCCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeecccccccc
Confidence 331111 111112221 12357999999999974 2 23445666665 579999999965544
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.9e-14 Score=124.24 Aligned_cols=149 Identities=22% Similarity=0.301 Sum_probs=111.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCC------------CCCCCceeeeEEEeeCc-eEEEEEEecCCCccccchHH
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFS------------QDMIPTVGFNMRKITKG-NVTIKVWDIGGQPRFRSMWE 83 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~------------~~~~pTig~~~~~i~~~-~~~l~I~DtpG~e~~~~~~~ 83 (329)
...+.||++.|+.++||||+++++...... .....|+..++...... +..+.++|||||++|+-+|+
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~ 86 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWE 86 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHH
Confidence 356899999999999999999999876531 11235667777776544 48999999999999999999
Q ss_pred HHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCC
Q psy2970 84 RYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIG 163 (329)
Q Consensus 84 ~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~ 163 (329)
.+.+++.+.| +++|.+++..+ .....+.-+ ... ..
T Consensus 87 ~l~~ga~gai-----------------------------------------vlVDss~~~~~-~a~~ii~f~-~~~--~~ 121 (187)
T COG2229 87 ILSRGAVGAI-----------------------------------------VLVDSSRPITF-HAEEIIDFL-TSR--NP 121 (187)
T ss_pred HHhCCcceEE-----------------------------------------EEEecCCCcch-HHHHHHHHH-hhc--cC
Confidence 9999999999 99999999888 333333333 321 12
Q ss_pred CcEEEEEEcCCCCChhhHHHH----HHH-hCCcEEEEeccchHHHHHHhhhh
Q psy2970 164 IPILVLGNKRDLPNALDEKEL----IDR-IMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 164 iPIiLVgNK~Dl~~~~e~~~l----~~~-~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+|++|++||.|+.++...+++ ... ..++.++++|.........+..+
T Consensus 122 ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~l 173 (187)
T COG2229 122 IPVVVAINKQDLFDALPPEKIREALKLELLSVPVIEIDATEGEGARDQLDVL 173 (187)
T ss_pred CCEEEEeeccccCCCCCHHHHHHHHHhccCCCceeeeecccchhHHHHHHHH
Confidence 999999999999987443322 223 36789999999865555555443
|
|
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.6e-14 Score=152.66 Aligned_cols=148 Identities=19% Similarity=0.196 Sum_probs=105.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcee--eeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig--~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
.+...|+++|..++|||||+++|..+++.....+++. .....+..++..+.||||||++.|..++......+|+++
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaI-- 365 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVV-- 365 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEE--
Confidence 4668999999999999999999998777543333322 222344545678999999999999999988899999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||+++... ......+... ...++|++|++||+|+
T Consensus 366 ---------------------------------------LVVdAddGv~-~qT~e~i~~a----~~~~vPiIVviNKiDl 401 (787)
T PRK05306 366 ---------------------------------------LVVAADDGVM-PQTIEAINHA----KAAGVPIIVAINKIDK 401 (787)
T ss_pred ---------------------------------------EEEECCCCCC-HhHHHHHHHH----HhcCCcEEEEEECccc
Confidence 9999987321 1111112222 2357999999999999
Q ss_pred CCh--hhH-HH------HHHHhC--CcEEEEeccchHHHHHHhhhhc
Q psy2970 176 PNA--LDE-KE------LIDRIM--IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 176 ~~~--~e~-~~------l~~~~~--~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.+. ... .+ +.++++ ++++++||+++.+++.+++.+.
T Consensus 402 ~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~ 448 (787)
T PRK05306 402 PGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAIL 448 (787)
T ss_pred cccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhh
Confidence 753 111 11 223343 6899999999888888877654
|
|
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.1e-14 Score=141.33 Aligned_cols=146 Identities=19% Similarity=0.146 Sum_probs=97.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCC--CC-------------------------------CCCCCceeeeEEEeeCc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQ--FS-------------------------------QDMIPTVGFNMRKITKG 63 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~--~~-------------------------------~~~~pTig~~~~~i~~~ 63 (329)
.+..++|+++|.+++|||||+++|+... .. .....|+...+..++.+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 3678999999999999999999997321 10 02234555555567788
Q ss_pred eEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc
Q psy2970 64 NVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD 143 (329)
Q Consensus 64 ~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~ 143 (329)
+.++.+|||||+++|..........+|+++ +|+|++++.
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~i-----------------------------------------lVvDa~~~~ 121 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAV-----------------------------------------LVVAADDAG 121 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEE-----------------------------------------EEEEcccCC
Confidence 899999999999887554444567889999 999998732
Q ss_pred cHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh---------hhHHHHHHHhC-----CcEEEEeccchHHHHH
Q psy2970 144 KLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA---------LDEKELIDRIM-----IDFWITLTLLIRWCES 205 (329)
Q Consensus 144 S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~---------~e~~~l~~~~~-----~~~~etSAk~~~~~~~ 205 (329)
.+.....+...+... ....|+++++||+|+.+. .+..++.+.++ .+++++||+++.+.++
T Consensus 122 ~~~~~~~~~~~~~~~--~~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 122 GVMPQTREHVFLART--LGINQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred CCCcchHHHHHHHHH--cCCCeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 222222222222222 112469999999999752 13344455555 4699999999655543
|
|
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.7e-14 Score=128.48 Aligned_cols=138 Identities=17% Similarity=0.111 Sum_probs=90.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC--CC-------------------------------CCCCceeeeEEEeeCceEEEE
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQF--SQ-------------------------------DMIPTVGFNMRKITKGNVTIK 68 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~--~~-------------------------------~~~pTig~~~~~i~~~~~~l~ 68 (329)
+|+++|.+|+|||||+++|+...- .. ....|+......+..++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 589999999999999999964221 10 011233333334556677899
Q ss_pred EEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHH
Q psy2970 69 VWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEAS 148 (329)
Q Consensus 69 I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~ 148 (329)
+|||||++++.......++.+|+++ +|+|+++... +..
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~l-----------------------------------------lVvD~~~~~~-~~~ 118 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAI-----------------------------------------LLVDARKGVL-EQT 118 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEE-----------------------------------------EEEECCCCcc-HhH
Confidence 9999999887665666788899999 9999987531 111
Q ss_pred HHHHHHHHhCCcCCCCcEEEEEEcCCCCCh---------hhHHHHHHHhCC---cEEEEeccchHHHH
Q psy2970 149 RNELHALIEKPQLIGIPILVLGNKRDLPNA---------LDEKELIDRIMI---DFWITLTLLIRWCE 204 (329)
Q Consensus 149 ~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~---------~e~~~l~~~~~~---~~~etSAk~~~~~~ 204 (329)
... ..+... ....++++|+||+|+.+. .+.+++.+.++. +++.+||+++.+.+
T Consensus 119 ~~~-~~~~~~--~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~ 183 (208)
T cd04166 119 RRH-SYILSL--LGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVV 183 (208)
T ss_pred HHH-HHHHHH--cCCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCc
Confidence 111 122222 112457889999999742 133445566664 48999999975544
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-13 Score=144.41 Aligned_cols=145 Identities=20% Similarity=0.162 Sum_probs=104.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC--CCC-----CCC----------CCceeeeEEEe-----eCceEEEEEEecCCCccc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG--QFS-----QDM----------IPTVGFNMRKI-----TKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~--~~~-----~~~----------~pTig~~~~~i-----~~~~~~l~I~DtpG~e~~ 78 (329)
-+|+++|..++|||||+.+|... .+. ..+ .-|+......+ +++.+.+++|||||+++|
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 48999999999999999999752 111 111 11221111112 455789999999999999
Q ss_pred cchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC
Q psy2970 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK 158 (329)
Q Consensus 79 ~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~ 158 (329)
...+..+++.+|+++ +|+|+++....+....|....
T Consensus 88 ~~~v~~sl~~aD~aI-----------------------------------------LVVDas~gv~~qt~~~~~~~~--- 123 (600)
T PRK05433 88 SYEVSRSLAACEGAL-----------------------------------------LVVDASQGVEAQTLANVYLAL--- 123 (600)
T ss_pred HHHHHHHHHHCCEEE-----------------------------------------EEEECCCCCCHHHHHHHHHHH---
Confidence 999999999999999 999999865554444443322
Q ss_pred CcCCCCcEEEEEEcCCCCChh---hHHHHHHHhCCc---EEEEeccchHHHHHHhhhhc
Q psy2970 159 PQLIGIPILVLGNKRDLPNAL---DEKELIDRIMID---FWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 159 ~~~~~iPIiLVgNK~Dl~~~~---e~~~l~~~~~~~---~~etSAk~~~~~~~~l~~i~ 211 (329)
..++|+++|+||+|+.+.. ..+++.+.++++ ++++||+++.+.+.+++.+.
T Consensus 124 --~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~ 180 (600)
T PRK05433 124 --ENDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIV 180 (600)
T ss_pred --HCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHH
Confidence 2468999999999997542 235666767765 89999999877877776663
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-13 Score=116.23 Aligned_cols=141 Identities=18% Similarity=0.216 Sum_probs=86.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--EeeCceEEEEEEecCCCcc----------ccchHHHHhhcc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--KITKGNVTIKVWDIGGQPR----------FRSMWERYCRGV 89 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~i~~~~~~l~I~DtpG~e~----------~~~~~~~~~~~a 89 (329)
+|+++|++|+|||||++++.++.+.....++.+.... .+..+. .+.+|||||... +......++...
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND-KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC-eEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 4899999999999999999966554444444443221 122222 889999999533 223333344332
Q ss_pred ---ceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccH--HHHHHHHHHHHhCCcCCCC
Q psy2970 90 ---NAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKL--EASRNELHALIEKPQLIGI 164 (329)
Q Consensus 90 ---d~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~--~~~~~~l~~i~~~~~~~~i 164 (329)
+.++ +++|..+..+. ..+..++.. .+.
T Consensus 80 ~~~~~~~-----------------------------------------~v~d~~~~~~~~~~~~~~~l~~-------~~~ 111 (170)
T cd01876 80 ENLKGVV-----------------------------------------LLIDSRHGPTEIDLEMLDWLEE-------LGI 111 (170)
T ss_pred hhhhEEE-----------------------------------------EEEEcCcCCCHhHHHHHHHHHH-------cCC
Confidence 3344 88888765321 222233322 258
Q ss_pred cEEEEEEcCCCCChhh----HHHHHH-----HhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 165 PILVLGNKRDLPNALD----EKELID-----RIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 165 PIiLVgNK~Dl~~~~e----~~~l~~-----~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+++|+||+|+....+ ...+.. ....+++++||++....+++.+.+.
T Consensus 112 ~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~ 167 (170)
T cd01876 112 PFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIE 167 (170)
T ss_pred CEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHH
Confidence 9999999999965422 112221 2235799999999877777776553
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >KOG4423|consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.3e-16 Score=141.59 Aligned_cols=139 Identities=22% Similarity=0.260 Sum_probs=119.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----ee-CceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----IT-KGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~-~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
-+|++|+|+.|||||++++++....|...|..|+|+++.- .+ ..-+++++||++||+++..+...|++++.+..
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~- 103 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAF- 103 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceE-
Confidence 3799999999999999999999999998999999987642 33 33468899999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc---CCCCcEEEEEE
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ---LIGIPILVLGN 171 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~---~~~iPIiLVgN 171 (329)
+|||+++..+|+....|..++-.+.. ...+|+++.+|
T Consensus 104 ----------------------------------------iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllan 143 (229)
T KOG4423|consen 104 ----------------------------------------IVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLAN 143 (229)
T ss_pred ----------------------------------------EEEEccccccccHHHHHHHhccCcccCCCCCcchheeccc
Confidence 99999999999999999998866533 34578899999
Q ss_pred cCCCCCh------hhHHHHHHHhCC-cEEEEeccc
Q psy2970 172 KRDLPNA------LDEKELIDRIMI-DFWITLTLL 199 (329)
Q Consensus 172 K~Dl~~~------~e~~~l~~~~~~-~~~etSAk~ 199 (329)
|||.... +...++.++.|. ..+|||+|.
T Consensus 144 kCd~e~~a~~~~~~~~d~f~kengf~gwtets~Ke 178 (229)
T KOG4423|consen 144 KCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKE 178 (229)
T ss_pred hhccChHhhhhhHHHHHHHHhccCccceeeecccc
Confidence 9999764 446678888886 599999999
|
|
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-13 Score=137.50 Aligned_cols=149 Identities=13% Similarity=0.146 Sum_probs=105.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCceeeeEE-EeeCceEEEEEEecCCCccccch--------HHHH
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTVGFNMR-KITKGNVTIKVWDIGGQPRFRSM--------WERY 85 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~--~~~~pTig~~~~-~i~~~~~~l~I~DtpG~e~~~~~--------~~~~ 85 (329)
-++.+|++++|.||||||||+|++.+.+-. ++..-|+.+.++ .++-+++++.+.||+|...-... ....
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 356799999999999999999999987652 444444444443 47899999999999996543222 2345
Q ss_pred hhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCc
Q psy2970 86 CRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIP 165 (329)
Q Consensus 86 ~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iP 165 (329)
+++||.++ +|+|.+.+.+-+.. ..+. ....+.|
T Consensus 294 i~~ADlvL-----------------------------------------~v~D~~~~~~~~d~-~~~~-----~~~~~~~ 326 (454)
T COG0486 294 IEEADLVL-----------------------------------------FVLDASQPLDKEDL-ALIE-----LLPKKKP 326 (454)
T ss_pred HHhCCEEE-----------------------------------------EEEeCCCCCchhhH-HHHH-----hcccCCC
Confidence 66777777 99999986221111 1111 1246789
Q ss_pred EEEEEEcCCCCChhhHHHHHHHhCCcEEEEeccchHHHHHHhhhhcC
Q psy2970 166 ILVLGNKRDLPNALDEKELIDRIMIDFWITLTLLIRWCESFLHHFGS 212 (329)
Q Consensus 166 IiLVgNK~Dl~~~~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~~ 212 (329)
+++|.||.|+..+.+...+.-.-+.+.+.+||+++...+.+.+++..
T Consensus 327 ~i~v~NK~DL~~~~~~~~~~~~~~~~~i~iSa~t~~Gl~~L~~~i~~ 373 (454)
T COG0486 327 IIVVLNKADLVSKIELESEKLANGDAIISISAKTGEGLDALREAIKQ 373 (454)
T ss_pred EEEEEechhcccccccchhhccCCCceEEEEecCccCHHHHHHHHHH
Confidence 99999999999886655442223457999999998777777766643
|
|
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-13 Score=146.94 Aligned_cols=148 Identities=22% Similarity=0.203 Sum_probs=105.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcee--eeEEE--e--eCceEEEEEEecCCCccccchHHHHhhccce
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRK--I--TKGNVTIKVWDIGGQPRFRSMWERYCRGVNA 91 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig--~~~~~--i--~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~ 91 (329)
.+...|+++|..++|||||+++|....+.....+++. ..... + +.....+.+|||||++.|..++..++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 4667999999999999999999998777543332222 12222 2 2346899999999999999999999999999
Q ss_pred eEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEE
Q psy2970 92 IVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGN 171 (329)
Q Consensus 92 iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgN 171 (329)
++ +|+|+++....+. .+.+..+ ...++|++|++|
T Consensus 322 aI-----------------------------------------LVVDA~dGv~~QT-~E~I~~~----k~~~iPiIVViN 355 (742)
T CHL00189 322 AI-----------------------------------------LIIAADDGVKPQT-IEAINYI----QAANVPIIVAIN 355 (742)
T ss_pred EE-----------------------------------------EEEECcCCCChhh-HHHHHHH----HhcCceEEEEEE
Confidence 99 9999887422111 1112222 135789999999
Q ss_pred cCCCCChh--hHH-HH------HHHhC--CcEEEEeccchHHHHHHhhhhc
Q psy2970 172 KRDLPNAL--DEK-EL------IDRIM--IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 172 K~Dl~~~~--e~~-~l------~~~~~--~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+|+.+.. +.. ++ .+.++ ++++++||+++.+.+++++.+.
T Consensus 356 KiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~ 406 (742)
T CHL00189 356 KIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETIL 406 (742)
T ss_pred CCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhh
Confidence 99997642 211 12 22333 6899999999888888887664
|
|
| >KOG1489|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.7e-14 Score=133.81 Aligned_cols=157 Identities=22% Similarity=0.256 Sum_probs=107.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCC-CceeeeEEEeeCceE-EEEEEecCCCccccchHHHHhhccceeEeecc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS-QDMI-PTVGFNMRKITKGNV-TIKVWDIGGQPRFRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~-~~~~-pTig~~~~~i~~~~~-~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~ 97 (329)
..|-+||.||+|||||++++...+.. ..|. +|+...+..+.+++. .+.+-|+||...-..+.+ ++|
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nk-----------GlG 265 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNK-----------GLG 265 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccC-----------ccc
Confidence 45779999999999999999987653 2222 233333334444444 399999999653322211 122
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc---ccHHHHHHHHHHHHhC-CcCCCCcEEEEEEcC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT---DKLEASRNELHALIEK-PQLIGIPILVLGNKR 173 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~---~S~~~~~~~l~~i~~~-~~~~~iPIiLVgNK~ 173 (329)
..++ +|+.|+-.+. ||+|++.+ +.++.+..++.|+-.. ....+.|.++|+||+
T Consensus 266 ~~FL-rHiER~~~l~----------------------fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKi 322 (366)
T KOG1489|consen 266 YKFL-RHIERCKGLL----------------------FVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKI 322 (366)
T ss_pred HHHH-HHHHhhceEE----------------------EEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEecc
Confidence 2222 4444444443 99999988 7778777777766432 235788999999999
Q ss_pred CCCChh-h-HHHHHHHhCCc-EEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNAL-D-EKELIDRIMID-FWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~~-e-~~~l~~~~~~~-~~etSAk~~~~~~~~l~~i~ 211 (329)
|+++++ + ++++++.+.-+ .+++||+++++.+.++..+.
T Consensus 323 D~~eae~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr 363 (366)
T KOG1489|consen 323 DLPEAEKNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLR 363 (366)
T ss_pred CchhHHHHHHHHHHHHcCCCcEEEeeeccccchHHHHHHHh
Confidence 996543 3 47888888766 99999999999999887765
|
|
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-13 Score=143.65 Aligned_cols=145 Identities=21% Similarity=0.225 Sum_probs=109.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeE--EEeeCceEEEEEEecCCCccccch------HHHHhh--c
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNM--RKITKGNVTIKVWDIGGQPRFRSM------WERYCR--G 88 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~--~~i~~~~~~l~I~DtpG~e~~~~~------~~~~~~--~ 88 (329)
++.+|+++|+||||||||+|++++.+......|.+.++- ..+..++..+++.|+||-...... .++|+. +
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 457799999999999999999999877655566555444 346777777999999997654332 233332 3
Q ss_pred cceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEE
Q psy2970 89 VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILV 168 (329)
Q Consensus 89 ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiL 168 (329)
.|.++ -|+|.+|.++--+ ...++++ .+.|+++
T Consensus 82 ~D~iv-----------------------------------------nVvDAtnLeRnLy---ltlQLlE----~g~p~il 113 (653)
T COG0370 82 PDLIV-----------------------------------------NVVDATNLERNLY---LTLQLLE----LGIPMIL 113 (653)
T ss_pred CCEEE-----------------------------------------EEcccchHHHHHH---HHHHHHH----cCCCeEE
Confidence 46666 8999998654333 3334443 3789999
Q ss_pred EEEcCCCCCh----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 169 LGNKRDLPNA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 169 VgNK~Dl~~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.|++|..+. .+.+++.+.+|+|.++|||+.++.++++...+.
T Consensus 114 aLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~ 160 (653)
T COG0370 114 ALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAII 160 (653)
T ss_pred EeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHH
Confidence 9999999875 678999999999999999999888888887663
|
|
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.4e-13 Score=141.61 Aligned_cols=142 Identities=16% Similarity=0.198 Sum_probs=98.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCC----CCCceeeeEEEeeC----------------ceEEEEEEecCCCcccc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQD----MIPTVGFNMRKITK----------------GNVTIKVWDIGGQPRFR 79 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~----~~pTig~~~~~i~~----------------~~~~l~I~DtpG~e~~~ 79 (329)
.--|+++|.+++|||||+++|.+..+... ..+++|..+...+. +...+.+|||||++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 34699999999999999999998876432 22344443322110 11238899999999999
Q ss_pred chHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCC---cccHHHHHHHHHHHH
Q psy2970 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAAD---TDKLEASRNELHALI 156 (329)
Q Consensus 80 ~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~---~~S~~~~~~~l~~i~ 156 (329)
.++..+++.+|+++ +|+|+++ +.+++.+. ++
T Consensus 84 ~l~~~~~~~aD~~I-----------------------------------------lVvD~~~g~~~qt~e~i~-----~l 117 (590)
T TIGR00491 84 NLRKRGGALADLAI-----------------------------------------LIVDINEGFKPQTQEALN-----IL 117 (590)
T ss_pred HHHHHHHhhCCEEE-----------------------------------------EEEECCcCCCHhHHHHHH-----HH
Confidence 99999999999999 9999987 34443332 11
Q ss_pred hCCcCCCCcEEEEEEcCCCCChh--------------hH---------------HHHHH------------Hh--CCcEE
Q psy2970 157 EKPQLIGIPILVLGNKRDLPNAL--------------DE---------------KELID------------RI--MIDFW 193 (329)
Q Consensus 157 ~~~~~~~iPIiLVgNK~Dl~~~~--------------e~---------------~~l~~------------~~--~~~~~ 193 (329)
. ..++|+++++||+|+.+.. +. .++++ ++ .++++
T Consensus 118 ~---~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iV 194 (590)
T TIGR00491 118 R---MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAII 194 (590)
T ss_pred H---HcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEE
Confidence 2 2468999999999996420 00 01111 12 26899
Q ss_pred EEeccchHHHHHHhhhh
Q psy2970 194 ITLTLLIRWCESFLHHF 210 (329)
Q Consensus 194 etSAk~~~~~~~~l~~i 210 (329)
++||+++.+.++++..+
T Consensus 195 pVSA~tGeGideLl~~l 211 (590)
T TIGR00491 195 PISAITGEGIPELLTML 211 (590)
T ss_pred EeecCCCCChhHHHHHH
Confidence 99999988888877655
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.8e-13 Score=127.36 Aligned_cols=129 Identities=21% Similarity=0.211 Sum_probs=90.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC--CCC----------------------CCCCceeeeEEEeeCceEEEEEEecCCCc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQ--FSQ----------------------DMIPTVGFNMRKITKGNVTIKVWDIGGQP 76 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~--~~~----------------------~~~pTig~~~~~i~~~~~~l~I~DtpG~e 76 (329)
-+|+++|.+|+|||||+++++... ... ....++......++.++.++.+|||||++
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 369999999999999999997421 100 01122223334567888999999999999
Q ss_pred cccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHH
Q psy2970 77 RFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALI 156 (329)
Q Consensus 77 ~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~ 156 (329)
+|.......++.+|+++ +|+|.++... .....++...
T Consensus 83 df~~~~~~~l~~aD~~I-----------------------------------------lVvda~~g~~-~~~~~i~~~~- 119 (267)
T cd04169 83 DFSEDTYRTLTAVDSAV-----------------------------------------MVIDAAKGVE-PQTRKLFEVC- 119 (267)
T ss_pred HHHHHHHHHHHHCCEEE-----------------------------------------EEEECCCCcc-HHHHHHHHHH-
Confidence 98877777889999999 9999987432 1222333222
Q ss_pred hCCcCCCCcEEEEEEcCCCCChhh---HHHHHHHhCCcEEEE
Q psy2970 157 EKPQLIGIPILVLGNKRDLPNALD---EKELIDRIMIDFWIT 195 (329)
Q Consensus 157 ~~~~~~~iPIiLVgNK~Dl~~~~e---~~~l~~~~~~~~~et 195 (329)
+ ..++|+++++||+|+..+.. .+++.+.++.+.+..
T Consensus 120 ~---~~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~~~~~~~ 158 (267)
T cd04169 120 R---LRGIPIITFINKLDREGRDPLELLDEIEEELGIDCTPL 158 (267)
T ss_pred H---hcCCCEEEEEECCccCCCCHHHHHHHHHHHHCCCceeE
Confidence 2 24789999999999977532 567778888654443
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.4e-13 Score=134.07 Aligned_cols=145 Identities=14% Similarity=0.037 Sum_probs=101.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC---CCCCCceeeeEEEeeCceEEEEEEecCCCcccc---------chHHHHhhc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS---QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR---------SMWERYCRG 88 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~---~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~---------~~~~~~~~~ 88 (329)
..|+++|.||||||||+|||++.+.. .....|....|......+..+.+.||+|.+... .+....+.+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 56999999999999999999998763 333444455566667777779999999977433 234556778
Q ss_pred cceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEE
Q psy2970 89 VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILV 168 (329)
Q Consensus 89 ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiL 168 (329)
||+++ ||+|...--+ .....+.+++. ..+.|+++
T Consensus 84 ADvil-----------------------------------------fvVD~~~Git--~~D~~ia~~Lr---~~~kpviL 117 (444)
T COG1160 84 ADVIL-----------------------------------------FVVDGREGIT--PADEEIAKILR---RSKKPVIL 117 (444)
T ss_pred CCEEE-----------------------------------------EEEeCCCCCC--HHHHHHHHHHH---hcCCCEEE
Confidence 99999 9999875221 22223333333 25689999
Q ss_pred EEEcCCCCChhhHHHHHHHhC-CcEEEEeccchHHHHHHhhhhc
Q psy2970 169 LGNKRDLPNALDEKELIDRIM-IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 169 VgNK~Dl~~~~e~~~l~~~~~-~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+||+|-.+.++...-.-.+| -+.+.+||..+.+...+++.+-
T Consensus 118 vvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~ 161 (444)
T COG1160 118 VVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVL 161 (444)
T ss_pred EEEcccCchhhhhHHHHHhcCCCCceEeehhhccCHHHHHHHHH
Confidence 999999885544333333444 4699999999777777776654
|
|
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.5e-13 Score=133.62 Aligned_cols=151 Identities=15% Similarity=0.117 Sum_probs=98.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC-----CCCCCceeeeEEEe--------------------eC------ceEE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS-----QDMIPTVGFNMRKI--------------------TK------GNVT 66 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~-----~~~~pTig~~~~~i--------------------~~------~~~~ 66 (329)
+++++|+++|..++|||||++++.+.... ....-|+...+..+ +. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 56899999999999999999999753221 01112222221110 11 2467
Q ss_pred EEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHH
Q psy2970 67 IKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLE 146 (329)
Q Consensus 67 l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~ 146 (329)
+.+|||||+++|...+......+|+++ +|+|+++.....
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aI-----------------------------------------lVVDa~~g~~~~ 120 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGAL-----------------------------------------LVIAANEPCPQP 120 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEE-----------------------------------------EEEECCCCcccc
Confidence 899999999999777777777889999 999998642112
Q ss_pred HHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhH----HH---HHHHh---CCcEEEEeccchHHHHHHhhhhcC
Q psy2970 147 ASRNELHALIEKPQLIGIPILVLGNKRDLPNALDE----KE---LIDRI---MIDFWITLTLLIRWCESFLHHFGS 212 (329)
Q Consensus 147 ~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~----~~---l~~~~---~~~~~etSAk~~~~~~~~l~~i~~ 212 (329)
...+.+..+ .. ....|+++++||+|+.+.++. ++ +.+.. +++++++||+++.+.+++++.+..
T Consensus 121 qt~e~l~~l-~~--~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~ 193 (406)
T TIGR03680 121 QTKEHLMAL-EI--IGIKNIVIVQNKIDLVSKEKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEK 193 (406)
T ss_pred chHHHHHHH-HH--cCCCeEEEEEEccccCCHHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHH
Confidence 222222222 21 112468999999999864321 22 22222 568999999998888888877754
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.9e-13 Score=123.00 Aligned_cols=124 Identities=17% Similarity=0.191 Sum_probs=89.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC--------C------------CCCCCceeeeEEEeeCceEEEEEEecCCCccccch
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQF--------S------------QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSM 81 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~--------~------------~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~ 81 (329)
+|+++|.+|+|||||+++++...- . ....-|+...+..+..++.++.+|||||+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 589999999999999999975211 0 00111233334456778899999999999999888
Q ss_pred HHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcC
Q psy2970 82 WERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQL 161 (329)
Q Consensus 82 ~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~ 161 (329)
+..+++.+|+++ +|+|.++.... ....++..+..
T Consensus 81 ~~~~l~~aD~~I-----------------------------------------lVvd~~~g~~~-~~~~~~~~~~~---- 114 (237)
T cd04168 81 VERSLSVLDGAI-----------------------------------------LVISAVEGVQA-QTRILWRLLRK---- 114 (237)
T ss_pred HHHHHHHhCeEE-----------------------------------------EEEeCCCCCCH-HHHHHHHHHHH----
Confidence 888999999999 99999875432 33334443322
Q ss_pred CCCcEEEEEEcCCCCCh---hhHHHHHHHhCCc
Q psy2970 162 IGIPILVLGNKRDLPNA---LDEKELIDRIMID 191 (329)
Q Consensus 162 ~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~~~ 191 (329)
.++|+++++||+|+... ...+++.++++..
T Consensus 115 ~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~ 147 (237)
T cd04168 115 LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSD 147 (237)
T ss_pred cCCCEEEEEECccccCCCHHHHHHHHHHHHCCC
Confidence 47899999999999864 4466777777743
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-12 Score=136.04 Aligned_cols=133 Identities=23% Similarity=0.295 Sum_probs=98.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc--CCCCCC----------------CCCceeeeEEEeeCceEEEEEEecCCCccccchHH
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS--GQFSQD----------------MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWE 83 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~--~~~~~~----------------~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~ 83 (329)
+|+++|..++|||||+.+|+. +.+... ...|+......+..++.++.+|||||+.+|.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 699999999999999999985 322211 12333334445678889999999999999988888
Q ss_pred HHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCC
Q psy2970 84 RYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIG 163 (329)
Q Consensus 84 ~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~ 163 (329)
.+++.+|+++ +|+|+++. .......++..+.+ .+
T Consensus 83 ~~l~~aD~al-----------------------------------------LVVDa~~G-~~~qT~~~l~~a~~----~~ 116 (594)
T TIGR01394 83 RVLGMVDGVL-----------------------------------------LLVDASEG-PMPQTRFVLKKALE----LG 116 (594)
T ss_pred HHHHhCCEEE-----------------------------------------EEEeCCCC-CcHHHHHHHHHHHH----CC
Confidence 9999999999 99999763 24455566666544 46
Q ss_pred CcEEEEEEcCCCCChh------hHHHHH-------HHhCCcEEEEeccch
Q psy2970 164 IPILVLGNKRDLPNAL------DEKELI-------DRIMIDFWITLTLLI 200 (329)
Q Consensus 164 iPIiLVgNK~Dl~~~~------e~~~l~-------~~~~~~~~etSAk~~ 200 (329)
+|+++|+||+|+.++. +..++. +++.++++.+||+.+
T Consensus 117 ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g 166 (594)
T TIGR01394 117 LKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAG 166 (594)
T ss_pred CCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEechhhcC
Confidence 8999999999997541 222222 223568999999996
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.9e-13 Score=129.43 Aligned_cols=86 Identities=26% Similarity=0.453 Sum_probs=75.2
Q ss_pred CceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhc
Q psy2970 51 PTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLF 130 (329)
Q Consensus 51 pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (329)
||+|+....++.+++.+.+||++||...+..|.+++.++++++
T Consensus 147 ~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~ii------------------------------------- 189 (317)
T cd00066 147 KTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAII------------------------------------- 189 (317)
T ss_pred ccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEE-------------------------------------
Confidence 5555555566778899999999999999999999999999999
Q ss_pred ceeEEEEECCCc----------ccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC
Q psy2970 131 QLIKYMVDAADT----------DKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN 177 (329)
Q Consensus 131 ~~~~lV~Dvt~~----------~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~ 177 (329)
+|+|+++. +.+.+....++.+++.....++|++|++||.|+-.
T Consensus 190 ----fvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f~ 242 (317)
T cd00066 190 ----FVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDLFE 242 (317)
T ss_pred ----EEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHHHH
Confidence 99999874 67889999999999988889999999999999743
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.6e-13 Score=130.50 Aligned_cols=87 Identities=24% Similarity=0.444 Sum_probs=76.3
Q ss_pred CCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhh
Q psy2970 50 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLL 129 (329)
Q Consensus 50 ~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (329)
.||+|+....+..++..+.+||++|+...+..|.+++.++++++
T Consensus 169 ~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~Ii------------------------------------ 212 (342)
T smart00275 169 VPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAII------------------------------------ 212 (342)
T ss_pred CCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEE------------------------------------
Confidence 35666666667778889999999999999999999999999999
Q ss_pred cceeEEEEECCC----------cccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC
Q psy2970 130 FQLIKYMVDAAD----------TDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN 177 (329)
Q Consensus 130 ~~~~~lV~Dvt~----------~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~ 177 (329)
+|+|+++ ...+++....++.+++.....++|++|++||.|+-.
T Consensus 213 -----FvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~~ 265 (342)
T smart00275 213 -----FCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDLFE 265 (342)
T ss_pred -----EEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhHH
Confidence 9999986 357889999999999988889999999999999854
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.2e-13 Score=120.37 Aligned_cols=139 Identities=17% Similarity=0.126 Sum_probs=89.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC--CC-------------------------------CCCCCceeeeEEEeeCceEEEE
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ--FS-------------------------------QDMIPTVGFNMRKITKGNVTIK 68 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~--~~-------------------------------~~~~pTig~~~~~i~~~~~~l~ 68 (329)
+|+++|..++|||||+.+|+..- .. .....|+......+..++.++.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 48999999999999999995311 00 0111223333344667788999
Q ss_pred EEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCccc---H
Q psy2970 69 VWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDK---L 145 (329)
Q Consensus 69 I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S---~ 145 (329)
+|||||+.++..........+|+++ +|+|+++... |
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i-----------------------------------------~VvDa~~~~~~~~~ 119 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAV-----------------------------------------LVVDARKGEFEAGF 119 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEE-----------------------------------------EEEECCCCcccccc
Confidence 9999999877666666677899999 9999987421 1
Q ss_pred H---HHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC----hh-------hHHHHHHHhC-----CcEEEEeccchHHHH
Q psy2970 146 E---ASRNELHALIEKPQLIGIPILVLGNKRDLPN----AL-------DEKELIDRIM-----IDFWITLTLLIRWCE 204 (329)
Q Consensus 146 ~---~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~----~~-------e~~~l~~~~~-----~~~~etSAk~~~~~~ 204 (329)
. .....+... .. ....|+++|+||+|+.. .. +++++.+.++ .+++++||+++.+.+
T Consensus 120 ~~~~~~~~~~~~~-~~--~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 120 EKGGQTREHALLA-RT--LGVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred ccccchHHHHHHH-HH--cCCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1 112222211 21 12368999999999973 21 1222334443 569999999976655
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.6e-12 Score=132.43 Aligned_cols=136 Identities=22% Similarity=0.252 Sum_probs=97.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc--CCCCCCC------------CCceeeeE----EEeeCceEEEEEEecCCCccccch
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS--GQFSQDM------------IPTVGFNM----RKITKGNVTIKVWDIGGQPRFRSM 81 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~--~~~~~~~------------~pTig~~~----~~i~~~~~~l~I~DtpG~e~~~~~ 81 (329)
--+|+++|..++|||||+++|+. +.+...+ .++.|..+ ..++.+++++.+|||||+.+|...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 35899999999999999999986 3332211 12333332 346778899999999999999999
Q ss_pred HHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcC
Q psy2970 82 WERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQL 161 (329)
Q Consensus 82 ~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~ 161 (329)
+..+++.+|+++ +|+|+++... ......+..+..
T Consensus 85 v~~~l~~aDg~I-----------------------------------------LVVDa~~G~~-~qt~~~l~~a~~---- 118 (607)
T PRK10218 85 VERVMSMVDSVL-----------------------------------------LVVDAFDGPM-PQTRFVTKKAFA---- 118 (607)
T ss_pred HHHHHHhCCEEE-----------------------------------------EEEecccCcc-HHHHHHHHHHHH----
Confidence 999999999999 9999986422 233333444332
Q ss_pred CCCcEEEEEEcCCCCChh---hHHHHHHH----------hCCcEEEEeccchH
Q psy2970 162 IGIPILVLGNKRDLPNAL---DEKELIDR----------IMIDFWITLTLLIR 201 (329)
Q Consensus 162 ~~iPIiLVgNK~Dl~~~~---e~~~l~~~----------~~~~~~etSAk~~~ 201 (329)
.++|+++++||+|+.++. ..+++.+. ..++++.+||+++.
T Consensus 119 ~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~ 171 (607)
T PRK10218 119 YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGI 171 (607)
T ss_pred cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCc
Confidence 478999999999997641 12222222 34678999999954
|
|
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.9e-13 Score=119.82 Aligned_cols=120 Identities=27% Similarity=0.396 Sum_probs=78.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE-e-eCceEEEEEEecCCCccccchHHH---HhhccceeE
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK-I-TKGNVTIKVWDIGGQPRFRSMWER---YCRGVNAIV 93 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~-i-~~~~~~l~I~DtpG~e~~~~~~~~---~~~~ad~iI 93 (329)
++-.|+++|++|+|||+|+.+|..+...+...+. ..+... + +...-.+.+.|+||+++.+..... +...+.++|
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 3457999999999999999999998665332222 233221 2 234457899999999999875444 478899999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECC-CcccHHHHHHHHHHHHhCC--cCCCCcEEEEE
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAA-DTDKLEASRNELHALIEKP--QLIGIPILVLG 170 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt-~~~S~~~~~~~l~~i~~~~--~~~~iPIiLVg 170 (329)
||+|.+ ++..+....+.+..++... ....+|++|++
T Consensus 81 -----------------------------------------fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIac 119 (181)
T PF09439_consen 81 -----------------------------------------FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIAC 119 (181)
T ss_dssp -----------------------------------------EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEE
T ss_pred -----------------------------------------EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEE
Confidence 999987 4556777777777776532 24679999999
Q ss_pred EcCCCCChhh
Q psy2970 171 NKRDLPNALD 180 (329)
Q Consensus 171 NK~Dl~~~~e 180 (329)
||.|+..+..
T Consensus 120 NK~Dl~~A~~ 129 (181)
T PF09439_consen 120 NKQDLFTAKP 129 (181)
T ss_dssp E-TTSTT---
T ss_pred eCccccccCC
Confidence 9999987643
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.8e-12 Score=116.33 Aligned_cols=109 Identities=17% Similarity=0.258 Sum_probs=77.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCC-----------CC------CceeeeE----EEe-----eCceEEEEEEecCCC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQD-----------MI------PTVGFNM----RKI-----TKGNVTIKVWDIGGQ 75 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~-----------~~------pTig~~~----~~i-----~~~~~~l~I~DtpG~ 75 (329)
+|+++|..|+|||||++++........ +. ...|..+ ..+ +++.+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999986433211 00 1111111 111 345688999999999
Q ss_pred ccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHH
Q psy2970 76 PRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHAL 155 (329)
Q Consensus 76 e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i 155 (329)
+++......++..+|+++ +|+|+++..+... ..++...
T Consensus 82 ~~f~~~~~~~~~~aD~~l-----------------------------------------lVvD~~~~~~~~~-~~~~~~~ 119 (213)
T cd04167 82 VNFMDEVAAALRLSDGVV-----------------------------------------LVVDVVEGVTSNT-ERLIRHA 119 (213)
T ss_pred cchHHHHHHHHHhCCEEE-----------------------------------------EEEECCCCCCHHH-HHHHHHH
Confidence 999888888999999999 9999987665432 3333433
Q ss_pred HhCCcCCCCcEEEEEEcCCCC
Q psy2970 156 IEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 156 ~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
.. .++|+++|+||+|+.
T Consensus 120 ~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 120 IL----EGLPIVLVINKIDRL 136 (213)
T ss_pred HH----cCCCEEEEEECcccC
Confidence 22 358999999999985
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.4e-12 Score=116.42 Aligned_cols=137 Identities=18% Similarity=0.170 Sum_probs=90.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC--------CC----------CCCCCceeeeEEEeeCceEEEEEEecCCCccccch
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQ--------FS----------QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSM 81 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~--------~~----------~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~ 81 (329)
.++|+++|..++|||||+++|+... .. ....-|+......+..++.++.+.||||..++...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 5899999999999999999997530 00 01222333333345667778999999999887666
Q ss_pred HHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcC
Q psy2970 82 WERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQL 161 (329)
Q Consensus 82 ~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~ 161 (329)
....+..+|+++ +|+|+...-. ......+..+ . .
T Consensus 82 ~~~~~~~~D~~i-----------------------------------------lVvda~~g~~-~~~~~~~~~~-~---~ 115 (195)
T cd01884 82 MITGAAQMDGAI-----------------------------------------LVVSATDGPM-PQTREHLLLA-R---Q 115 (195)
T ss_pred HHHHhhhCCEEE-----------------------------------------EEEECCCCCc-HHHHHHHHHH-H---H
Confidence 666777888888 9999876321 2222233333 2 2
Q ss_pred CCCc-EEEEEEcCCCCChh--------hHHHHHHHhC-----CcEEEEeccchHH
Q psy2970 162 IGIP-ILVLGNKRDLPNAL--------DEKELIDRIM-----IDFWITLTLLIRW 202 (329)
Q Consensus 162 ~~iP-IiLVgNK~Dl~~~~--------e~~~l~~~~~-----~~~~etSAk~~~~ 202 (329)
.++| ++++.||+|+.... +..++.++++ ++++.+||+++.+
T Consensus 116 ~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n 170 (195)
T cd01884 116 VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALE 170 (195)
T ss_pred cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccC
Confidence 3566 78899999996432 2333333333 6799999999443
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.7e-12 Score=118.08 Aligned_cols=149 Identities=22% Similarity=0.321 Sum_probs=99.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCC---CCCCceeeeEEEee-CceEEEEEEecCCCccccc-----hHHHHhhcccee
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQ---DMIPTVGFNMRKIT-KGNVTIKVWDIGGQPRFRS-----MWERYCRGVNAI 92 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~---~~~pTig~~~~~i~-~~~~~l~I~DtpG~e~~~~-----~~~~~~~~ad~i 92 (329)
||+++|+++|||||+.+.++.+..+. ...||+.+....+. ...+.+++||.|||..+-. ..+..++++.++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 79999999999999999999876542 33488887777774 6677999999999976533 457788999999
Q ss_pred EeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC--CcCCCCcEEEEE
Q psy2970 93 VWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK--PQLIGIPILVLG 170 (329)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~--~~~~~iPIiLVg 170 (329)
| ||+|+.+.+ +++....+.+.++. ...+++.+-|+.
T Consensus 81 I-----------------------------------------yV~D~qs~~-~~~~l~~~~~~i~~l~~~sp~~~v~vfi 118 (232)
T PF04670_consen 81 I-----------------------------------------YVFDAQSDD-YDEDLAYLSDCIEALRQYSPNIKVFVFI 118 (232)
T ss_dssp E-----------------------------------------EEEETT-ST-CHHHHHHHHHHHHHHHHHSTT-EEEEEE
T ss_pred E-----------------------------------------EEEEccccc-HHHHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 9 999998543 33333333333322 125788999999
Q ss_pred EcCCCCChh-----------hHHHHHHHhC---CcEEEEeccchHHHHHHhhhhcC
Q psy2970 171 NKRDLPNAL-----------DEKELIDRIM---IDFWITLTLLIRWCESFLHHFGS 212 (329)
Q Consensus 171 NK~Dl~~~~-----------e~~~l~~~~~---~~~~etSAk~~~~~~~~l~~i~~ 212 (329)
+|.|+..++ +..+.....+ +.++.||.....+.+++-.-+..
T Consensus 119 HK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D~Sly~A~S~Ivq~ 174 (232)
T PF04670_consen 119 HKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWDESLYEAWSKIVQK 174 (232)
T ss_dssp E-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTSTHHHHHHHHHHHT
T ss_pred eecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccCcCcHHHHHHHHHHHH
Confidence 999997652 2333344455 78999999998888887766654
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.2e-12 Score=119.28 Aligned_cols=129 Identities=19% Similarity=0.132 Sum_probs=90.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCC--------------------CCCCceeeeEEEeeCceEEEEEEecCCCccccch
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQ--------------------DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSM 81 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~--------------------~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~ 81 (329)
+|+++|.+|+|||||++++....... ....|+......+..++..+.+|||||..++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 58999999999999999997422110 0122233333345667789999999999888777
Q ss_pred HHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcC
Q psy2970 82 WERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQL 161 (329)
Q Consensus 82 ~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~ 161 (329)
+...++.+|+++ +|+|.++....... ..+..+. .
T Consensus 81 ~~~~l~~aD~~i-----------------------------------------~Vvd~~~g~~~~~~-~~~~~~~----~ 114 (268)
T cd04170 81 TRAALRAADAAL-----------------------------------------VVVSAQSGVEVGTE-KLWEFAD----E 114 (268)
T ss_pred HHHHHHHCCEEE-----------------------------------------EEEeCCCCCCHHHH-HHHHHHH----H
Confidence 888999999999 99999876543322 2223322 2
Q ss_pred CCCcEEEEEEcCCCCCh---hhHHHHHHHhCCcEEEEe
Q psy2970 162 IGIPILVLGNKRDLPNA---LDEKELIDRIMIDFWITL 196 (329)
Q Consensus 162 ~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~~~~~etS 196 (329)
.++|+++|+||+|+... ...+++.+.++.+.+.++
T Consensus 115 ~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~~~~~~ 152 (268)
T cd04170 115 AGIPRIIFINKMDRERADFDKTLAALQEAFGRPVVPLQ 152 (268)
T ss_pred cCCCEEEEEECCccCCCCHHHHHHHHHHHhCCCeEEEE
Confidence 46899999999999875 335567777776655443
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >KOG1707|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.3e-13 Score=134.55 Aligned_cols=150 Identities=17% Similarity=0.219 Sum_probs=110.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeE--EEeeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNM--RKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~--~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
.++.++|+++|+.||||||||-++...+|.+.-++-..... ..+..+.++..|.||+..+.-+......++.||++.
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~- 84 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC- 84 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE-
Confidence 35789999999999999999999999998754332221111 124566778999999987776777778899999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc--CCCCcEEEEEEc
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ--LIGIPILVLGNK 172 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~--~~~iPIiLVgNK 172 (329)
+||+++++++++.+...|..+++... -.++||||||||
T Consensus 85 ----------------------------------------lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK 124 (625)
T KOG1707|consen 85 ----------------------------------------LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNK 124 (625)
T ss_pred ----------------------------------------EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeec
Confidence 99999999999999875555555422 268999999999
Q ss_pred CCCCChh------hHHHHHHHhC-C-cEEEEeccc-hHHHHHHh
Q psy2970 173 RDLPNAL------DEKELIDRIM-I-DFWITLTLL-IRWCESFL 207 (329)
Q Consensus 173 ~Dl~~~~------e~~~l~~~~~-~-~~~etSAk~-~~~~~~~l 207 (329)
+|..... +...+.+++. + ..++|||++ .+..+.|.
T Consensus 125 ~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e~fY 168 (625)
T KOG1707|consen 125 SDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVSELFY 168 (625)
T ss_pred cCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHhhhh
Confidence 9997642 1233445553 3 378999999 44444443
|
|
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-12 Score=136.02 Aligned_cols=145 Identities=17% Similarity=0.225 Sum_probs=98.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC---CCCCC--CCCceeeeEEEeeC-ceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG---QFSQD--MIPTVGFNMRKITK-GNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~---~~~~~--~~pTig~~~~~i~~-~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
-|.++|..++|||||+++|++. .+.+. ...|+...+..+.. ++..+.+|||||+++|.......+..+|+++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~l-- 79 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHAL-- 79 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEE--
Confidence 4789999999999999999963 33322 35666665555432 3456899999999988655555678889999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCc-EEEEEEcCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIP-ILVLGNKRD 174 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iP-IiLVgNK~D 174 (329)
+|+|+++.- .....+.+. ++.. .++| ++||+||+|
T Consensus 80 ---------------------------------------LVVda~eg~-~~qT~ehl~-il~~---lgi~~iIVVlNKiD 115 (614)
T PRK10512 80 ---------------------------------------LVVACDDGV-MAQTREHLA-ILQL---TGNPMLTVALTKAD 115 (614)
T ss_pred ---------------------------------------EEEECCCCC-cHHHHHHHH-HHHH---cCCCeEEEEEECCc
Confidence 999987631 112222222 2222 3455 579999999
Q ss_pred CCChhh-------HHHHHHHhC---CcEEEEeccchHHHHHHhhhhcC
Q psy2970 175 LPNALD-------EKELIDRIM---IDFWITLTLLIRWCESFLHHFGS 212 (329)
Q Consensus 175 l~~~~e-------~~~l~~~~~---~~~~etSAk~~~~~~~~l~~i~~ 212 (329)
+.++.. ..++.+..+ .+++++||+++.+.+.+++.+..
T Consensus 116 lv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~ 163 (614)
T PRK10512 116 RVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQ 163 (614)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHH
Confidence 986422 223333333 68999999998888888877754
|
|
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.3e-12 Score=117.20 Aligned_cols=146 Identities=18% Similarity=0.211 Sum_probs=92.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCC----------------c-------eeeeE-----------------EEee
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIP----------------T-------VGFNM-----------------RKIT 61 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~p----------------T-------ig~~~-----------------~~i~ 61 (329)
||+++|+.++|||||++++..+.+...... | +|.+. ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 589999999999999999997665421110 0 11110 0112
Q ss_pred CceEEEEEEecCCCccccchHHHHhh--ccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEEC
Q psy2970 62 KGNVTIKVWDIGGQPRFRSMWERYCR--GVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDA 139 (329)
Q Consensus 62 ~~~~~l~I~DtpG~e~~~~~~~~~~~--~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dv 139 (329)
..+..+.+.||||.++|.......+. .+|.++ +|+|+
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~l-----------------------------------------lVvda 119 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAM-----------------------------------------LVVAA 119 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEE-----------------------------------------EEEEC
Confidence 33467899999999887543332332 467777 99998
Q ss_pred CCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhh----HHHHHHHhC--------------------------
Q psy2970 140 ADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD----EKELIDRIM-------------------------- 189 (329)
Q Consensus 140 t~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e----~~~l~~~~~-------------------------- 189 (329)
..... ......+..+. ..++|+++|.||+|+.++.+ .+++.+.+.
T Consensus 120 ~~g~~-~~d~~~l~~l~----~~~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~ 194 (224)
T cd04165 120 NAGII-GMTKEHLGLAL----ALNIPVFVVVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSS 194 (224)
T ss_pred CCCCc-HHHHHHHHHHH----HcCCCEEEEEECccccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCc
Confidence 75432 22223333332 24689999999999876532 223333332
Q ss_pred ---CcEEEEeccchHHHHHHhhhhcCC
Q psy2970 190 ---IDFWITLTLLIRWCESFLHHFGSH 213 (329)
Q Consensus 190 ---~~~~etSAk~~~~~~~~l~~i~~~ 213 (329)
+++|.+||.++.+.+.+.+.+...
T Consensus 195 ~~~~pi~~vSavtg~Gi~~L~~~L~~l 221 (224)
T cd04165 195 ERIVPIFQVSNVTGEGLDLLHAFLNLL 221 (224)
T ss_pred cccCcEEEeeCCCccCHHHHHHHHHhc
Confidence 389999999988888888776543
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.3e-12 Score=133.10 Aligned_cols=109 Identities=20% Similarity=0.245 Sum_probs=78.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCC----CCCceeeeEEEee------Cce-----E-----EEEEEecCCCccc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQD----MIPTVGFNMRKIT------KGN-----V-----TIKVWDIGGQPRF 78 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~----~~pTig~~~~~i~------~~~-----~-----~l~I~DtpG~e~~ 78 (329)
+...|+++|.+|+|||||++++.+..+... ..+++|..+...+ +.. . .+.+|||||++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 456799999999999999999987654322 2234554333211 111 1 2689999999999
Q ss_pred cchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCC---cccHHHHHHHHHHH
Q psy2970 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAAD---TDKLEASRNELHAL 155 (329)
Q Consensus 79 ~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~---~~S~~~~~~~l~~i 155 (329)
..++...+..+|+++ +|+|+++ +.+++.+.. +
T Consensus 85 ~~~~~~~~~~aD~~I-----------------------------------------lVvDa~~g~~~qt~e~i~~----~ 119 (586)
T PRK04004 85 TNLRKRGGALADIAI-----------------------------------------LVVDINEGFQPQTIEAINI----L 119 (586)
T ss_pred HHHHHHhHhhCCEEE-----------------------------------------EEEECCCCCCHhHHHHHHH----H
Confidence 998888888999999 9999987 455544431 1
Q ss_pred HhCCcCCCCcEEEEEEcCCCC
Q psy2970 156 IEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 156 ~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
. ..++|+++++||+|+.
T Consensus 120 -~---~~~vpiIvviNK~D~~ 136 (586)
T PRK04004 120 -K---RRKTPFVVAANKIDRI 136 (586)
T ss_pred -H---HcCCCEEEEEECcCCc
Confidence 2 2478999999999985
|
|
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.7e-12 Score=127.44 Aligned_cols=152 Identities=16% Similarity=0.138 Sum_probs=94.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCC-----CCCCCceeeeEEEe--------------------eC-c-----eE
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFS-----QDMIPTVGFNMRKI--------------------TK-G-----NV 65 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~-----~~~~pTig~~~~~i--------------------~~-~-----~~ 65 (329)
.+..++|+++|..++|||||+.+|.+.... ....-|+...+... +. + ..
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 356799999999999999999999653111 11223433322110 00 0 35
Q ss_pred EEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccH
Q psy2970 66 TIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKL 145 (329)
Q Consensus 66 ~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~ 145 (329)
.+.+|||||+++|..........+|+++ +|+|++++...
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~l-----------------------------------------lVVDa~~~~~~ 124 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAI-----------------------------------------LVIAANEPCPQ 124 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEE-----------------------------------------EEEECCCCCCC
Confidence 7899999999887554333444568888 99999864211
Q ss_pred HHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhh-------HHHHHHHh---CCcEEEEeccchHHHHHHhhhhcC
Q psy2970 146 EASRNELHALIEKPQLIGIPILVLGNKRDLPNALD-------EKELIDRI---MIDFWITLTLLIRWCESFLHHFGS 212 (329)
Q Consensus 146 ~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e-------~~~l~~~~---~~~~~etSAk~~~~~~~~l~~i~~ 212 (329)
......+..+ +. ....|+++|+||+|+.+..+ ..++.+.. +.+++++||+++.+.+.+++.+..
T Consensus 125 ~~t~~~l~~l-~~--~~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~ 198 (411)
T PRK04000 125 PQTKEHLMAL-DI--IGIKNIVIVQNKIDLVSKERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEE 198 (411)
T ss_pred hhHHHHHHHH-HH--cCCCcEEEEEEeeccccchhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHH
Confidence 1112222222 11 11246899999999976432 22222221 468999999998888887777654
|
|
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.9e-12 Score=119.79 Aligned_cols=147 Identities=20% Similarity=0.228 Sum_probs=86.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCC----------CCCceeeeEEE--e--eCceEEEEEEecCCCccccc---hH
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQD----------MIPTVGFNMRK--I--TKGNVTIKVWDIGGQPRFRS---MW 82 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~----------~~pTig~~~~~--i--~~~~~~l~I~DtpG~e~~~~---~~ 82 (329)
.++|+++|.+|+|||||+|++++..+... ..+|++..... + ++..+++.+|||||..+... .|
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 68999999999999999999998876432 35566554433 2 34457899999999644322 11
Q ss_pred -----------HHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHH-HH
Q psy2970 83 -----------ERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEAS-RN 150 (329)
Q Consensus 83 -----------~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~-~~ 150 (329)
..++.+...+. |. +.-.....+++++++|.+.. .+... ..
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~-------------r~--------------~~~~d~rvh~~ly~i~~~~~-~l~~~D~~ 135 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIK-------------RN--------------PRIPDTRVHACLYFIEPTGH-GLKPLDIE 135 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc-------------cc--------------ccCCCCceEEEEEEEeCCCC-CCCHHHHH
Confidence 11111111111 00 00001123455588887642 22222 34
Q ss_pred HHHHHHhCCcCCCCcEEEEEEcCCCCChh-------hHHHHHHHhCCcEEEEeccc
Q psy2970 151 ELHALIEKPQLIGIPILVLGNKRDLPNAL-------DEKELIDRIMIDFWITLTLL 199 (329)
Q Consensus 151 ~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~-------e~~~l~~~~~~~~~etSAk~ 199 (329)
.++.+. .++|+++|+||+|+.... ...+.++..+++++......
T Consensus 136 ~lk~l~-----~~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 136 FMKRLS-----KRVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred HHHHHh-----ccCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 444442 258999999999996642 34556667778877765533
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-11 Score=101.34 Aligned_cols=104 Identities=22% Similarity=0.268 Sum_probs=68.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC---CCCCCceeeeEEEeeCceEEEEEEecCCCccccch---------HHHHhhcc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFS---QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSM---------WERYCRGV 89 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~---~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~---------~~~~~~~a 89 (329)
+|+++|.+|||||||+|+|++.+.. .....|....+..+......+.++||||...-... ....+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 6899999999999999999986432 22233444444445566777789999997542111 12223567
Q ss_pred ceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEE
Q psy2970 90 NAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVL 169 (329)
Q Consensus 90 d~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLV 169 (329)
|.++ +|+|.+++.. +.....+.++ . .+.|+++|
T Consensus 81 d~ii-----------------------------------------~vv~~~~~~~-~~~~~~~~~l----~-~~~~~i~v 113 (116)
T PF01926_consen 81 DLII-----------------------------------------YVVDASNPIT-EDDKNILREL----K-NKKPIILV 113 (116)
T ss_dssp SEEE-----------------------------------------EEEETTSHSH-HHHHHHHHHH----H-TTSEEEEE
T ss_pred CEEE-----------------------------------------EEEECCCCCC-HHHHHHHHHH----h-cCCCEEEE
Confidence 7777 9999777321 2333333444 2 57899999
Q ss_pred EEc
Q psy2970 170 GNK 172 (329)
Q Consensus 170 gNK 172 (329)
.||
T Consensus 114 ~NK 116 (116)
T PF01926_consen 114 LNK 116 (116)
T ss_dssp EES
T ss_pred EcC
Confidence 998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.3e-12 Score=126.40 Aligned_cols=146 Identities=16% Similarity=0.180 Sum_probs=97.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCC---CCCCCceeeeEEEeeCceEEEEEEecCCCcc----------ccch-HHHH
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFS---QDMIPTVGFNMRKITKGNVTIKVWDIGGQPR----------FRSM-WERY 85 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~---~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~----------~~~~-~~~~ 85 (329)
.+||+++|.||||||||+|++++++-. .....|...-...++.++-++.+.||+|..+ |... ....
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~a 257 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKA 257 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhH
Confidence 499999999999999999999987642 2222333333334677788889999999543 2221 2345
Q ss_pred hhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCc
Q psy2970 86 CRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIP 165 (329)
Q Consensus 86 ~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iP 165 (329)
++.+|.++ +|+|++.+-+ +....+..+.. ..+.+
T Consensus 258 I~~a~vvl-----------------------------------------lviDa~~~~~--~qD~~ia~~i~---~~g~~ 291 (444)
T COG1160 258 IERADVVL-----------------------------------------LVIDATEGIS--EQDLRIAGLIE---EAGRG 291 (444)
T ss_pred HhhcCEEE-----------------------------------------EEEECCCCch--HHHHHHHHHHH---HcCCC
Confidence 56677777 9999997643 22222222222 35789
Q ss_pred EEEEEEcCCCCCh--hhHHH----HHHHhC----CcEEEEeccchHHHHHHhhhhc
Q psy2970 166 ILVLGNKRDLPNA--LDEKE----LIDRIM----IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 166 IiLVgNK~Dl~~~--~e~~~----l~~~~~----~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+++|.||.|+.+. ...++ +..++. .+.+.+||+++.....+++.+.
T Consensus 292 ~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~ 347 (444)
T COG1160 292 IVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIK 347 (444)
T ss_pred eEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHH
Confidence 9999999998664 22222 333332 5789999999777777766653
|
|
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-11 Score=119.82 Aligned_cols=71 Identities=24% Similarity=0.410 Sum_probs=52.5
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCC------CCCCCceeeeEEE-------------------eeC-ceEEEEEEecCCC-
Q psy2970 23 LTLVGLQCSGKTTFVNVIASGQFS------QDMIPTVGFNMRK-------------------ITK-GNVTIKVWDIGGQ- 75 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~~~~------~~~~pTig~~~~~-------------------i~~-~~~~l~I~DtpG~- 75 (329)
|.++|.||||||||+|++++.+.. +.+.|++|..+.. .++ +.+++++|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999987643 3445677655532 112 4478999999998
Q ss_pred ---ccccchHHH---HhhccceeE
Q psy2970 76 ---PRFRSMWER---YCRGVNAIV 93 (329)
Q Consensus 76 ---e~~~~~~~~---~~~~ad~iI 93 (329)
+.++.+... .+++||+++
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii 104 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALI 104 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEE
Confidence 445555444 489999999
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.8e-12 Score=112.36 Aligned_cols=74 Identities=14% Similarity=0.280 Sum_probs=45.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceee-----eEEEee-CceEEEEEEecCCCccccchHHHH-----hhc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGF-----NMRKIT-KGNVTIKVWDIGGQPRFRSMWERY-----CRG 88 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~-----~~~~i~-~~~~~l~I~DtpG~e~~~~~~~~~-----~~~ 88 (329)
++||+++|++|||||||+|++.+........++++. ....+. .....+.+|||||..........+ +.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 479999999999999999999986553322222221 001111 112368999999976543333333 344
Q ss_pred cceeE
Q psy2970 89 VNAIV 93 (329)
Q Consensus 89 ad~iI 93 (329)
+|.++
T Consensus 81 ~d~~l 85 (197)
T cd04104 81 YDFFI 85 (197)
T ss_pred cCEEE
Confidence 55555
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.8e-11 Score=119.39 Aligned_cols=138 Identities=18% Similarity=0.177 Sum_probs=91.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCC-------C-----------CCCCCceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQF-------S-----------QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~-------~-----------~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
.++.++|+++|..++|||||+++|++... . ....-|+......++.++..+.++||||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 46789999999999999999999975210 0 01223443333345556678899999999877
Q ss_pred cchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC
Q psy2970 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK 158 (329)
Q Consensus 79 ~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~ 158 (329)
..........+|+++ +|+|+++... ....+.+..+.
T Consensus 89 ~~~~~~~~~~~d~~l-----------------------------------------lVvd~~~g~~-~~t~~~~~~~~-- 124 (394)
T PRK12736 89 VKNMITGAAQMDGAI-----------------------------------------LVVAATDGPM-PQTREHILLAR-- 124 (394)
T ss_pred HHHHHHHHhhCCEEE-----------------------------------------EEEECCCCCc-hhHHHHHHHHH--
Confidence 554444556778888 9999876321 22223333222
Q ss_pred CcCCCCc-EEEEEEcCCCCChh--------hHHHHHHHhC-----CcEEEEeccch
Q psy2970 159 PQLIGIP-ILVLGNKRDLPNAL--------DEKELIDRIM-----IDFWITLTLLI 200 (329)
Q Consensus 159 ~~~~~iP-IiLVgNK~Dl~~~~--------e~~~l~~~~~-----~~~~etSAk~~ 200 (329)
..++| +++++||+|+.+.. +..++.+..+ ++++.+||+++
T Consensus 125 --~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g 178 (394)
T PRK12736 125 --QVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKA 178 (394)
T ss_pred --HcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeecccc
Confidence 23677 67899999997532 2233333444 57999999985
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.32 E-value=2e-11 Score=121.21 Aligned_cols=138 Identities=17% Similarity=0.166 Sum_probs=91.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcC-----C--C---------C--CCCCCceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASG-----Q--F---------S--QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~-----~--~---------~--~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
.++.++|+++|..++|||||+++|++. + + . ....-|+......++.++.++.+|||||+++|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 467899999999999999999999732 0 0 0 11233444444445666778999999999987
Q ss_pred cchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC
Q psy2970 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK 158 (329)
Q Consensus 79 ~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~ 158 (329)
..........+|+++ +|+|+.+... ....+.+..+.
T Consensus 89 ~~~~~~~~~~~D~~i-----------------------------------------lVvda~~g~~-~qt~e~l~~~~-- 124 (394)
T TIGR00485 89 VKNMITGAAQMDGAI-----------------------------------------LVVSATDGPM-PQTREHILLAR-- 124 (394)
T ss_pred HHHHHHHHhhCCEEE-----------------------------------------EEEECCCCCc-HHHHHHHHHHH--
Confidence 554444456678888 9999986321 12222222222
Q ss_pred CcCCCCcEE-EEEEcCCCCChh--------hHHHHHHHhC-----CcEEEEeccch
Q psy2970 159 PQLIGIPIL-VLGNKRDLPNAL--------DEKELIDRIM-----IDFWITLTLLI 200 (329)
Q Consensus 159 ~~~~~iPIi-LVgNK~Dl~~~~--------e~~~l~~~~~-----~~~~etSAk~~ 200 (329)
..++|.+ +++||+|+.+.. +.+++.+.++ ++++++||+++
T Consensus 125 --~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g 178 (394)
T TIGR00485 125 --QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKA 178 (394)
T ss_pred --HcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEECccccc
Confidence 2356755 689999997642 2444555554 68999999873
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >KOG1490|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.4e-12 Score=128.74 Aligned_cols=146 Identities=17% Similarity=0.105 Sum_probs=109.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCce-eeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTV-GFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTi-g~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~ 97 (329)
.-.++++|.||||||||+|.++..+.. +.|..|+ +.-+..++++...+++.||||..+.-. ++-+.+
T Consensus 168 trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~pl------EdrN~I----- 236 (620)
T KOG1490|consen 168 TRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPE------EDRNII----- 236 (620)
T ss_pred cCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcch------hhhhHH-----
Confidence 347999999999999999999988765 3444443 344556889999999999999654311 111111
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc--ccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT--DKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~--~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
.-|+.-|++|++.+|+|+.|++.. .|.+....+++.+.. -+.+.|.|+|+||+|+
T Consensus 237 ---------------------EmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKp--LFaNK~~IlvlNK~D~ 293 (620)
T KOG1490|consen 237 ---------------------EMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKP--LFANKVTILVLNKIDA 293 (620)
T ss_pred ---------------------HHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHH--HhcCCceEEEeecccc
Confidence 112334889999999999999865 678888899998844 4789999999999998
Q ss_pred CChh--------hHHHHHHHhCCcEEEEeccc
Q psy2970 176 PNAL--------DEKELIDRIMIDFWITLTLL 199 (329)
Q Consensus 176 ~~~~--------e~~~l~~~~~~~~~etSAk~ 199 (329)
...+ -.+.+.++-+++++++|..+
T Consensus 294 m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~ 325 (620)
T KOG1490|consen 294 MRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQ 325 (620)
T ss_pred cCccccCHHHHHHHHHHHhccCceEEEecccc
Confidence 6541 14456666678999999988
|
|
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.3e-11 Score=128.65 Aligned_cols=127 Identities=21% Similarity=0.142 Sum_probs=95.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCC-------------CC-------CCCCCceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQ-------------FS-------QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~-------------~~-------~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
+..+|+++|..|+|||||+++|.... .. ..+..|+......+..++..+.+|||||+.++
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 45799999999999999999997421 00 12345666556667778899999999999999
Q ss_pred cchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC
Q psy2970 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK 158 (329)
Q Consensus 79 ~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~ 158 (329)
...+..+++.+|+++ +|+|.++......... +..+.
T Consensus 87 ~~~~~~~l~~aD~~i-----------------------------------------lVvd~~~~~~~~~~~~-~~~~~-- 122 (687)
T PRK13351 87 TGEVERSLRVLDGAV-----------------------------------------VVFDAVTGVQPQTETV-WRQAD-- 122 (687)
T ss_pred HHHHHHHHHhCCEEE-----------------------------------------EEEeCCCCCCHHHHHH-HHHHH--
Confidence 888899999999999 9999988765554333 33332
Q ss_pred CcCCCCcEEEEEEcCCCCCh---hhHHHHHHHhCCc
Q psy2970 159 PQLIGIPILVLGNKRDLPNA---LDEKELIDRIMID 191 (329)
Q Consensus 159 ~~~~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~~~ 191 (329)
..++|+++|+||+|+... ...+++.+.++..
T Consensus 123 --~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~ 156 (687)
T PRK13351 123 --RYGIPRLIFINKMDRVGADLFKVLEDIEERFGKR 156 (687)
T ss_pred --hcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCC
Confidence 247899999999999875 3456666677654
|
|
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-11 Score=116.55 Aligned_cols=132 Identities=17% Similarity=0.107 Sum_probs=90.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHc--CCCC------------------CCCCCceeeeEEEeeCceEEEEEEecCCCccccch
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS--GQFS------------------QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSM 81 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~--~~~~------------------~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~ 81 (329)
+|+++|.+|+|||||++++.. +... ....-|+......+..++.++.++||||..++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 589999999999999999963 1110 01112333333445667889999999999988888
Q ss_pred HHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcC
Q psy2970 82 WERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQL 161 (329)
Q Consensus 82 ~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~ 161 (329)
+...++.+|+++ +|+|..+... ......+..+. .
T Consensus 81 ~~~~l~~aD~ai-----------------------------------------lVVDa~~g~~-~~t~~~~~~~~----~ 114 (270)
T cd01886 81 VERSLRVLDGAV-----------------------------------------AVFDAVAGVE-PQTETVWRQAD----R 114 (270)
T ss_pred HHHHHHHcCEEE-----------------------------------------EEEECCCCCC-HHHHHHHHHHH----H
Confidence 888999999999 9999876432 12223333332 2
Q ss_pred CCCcEEEEEEcCCCCCh---hhHHHHHHHhCCc----EEEEeccc
Q psy2970 162 IGIPILVLGNKRDLPNA---LDEKELIDRIMID----FWITLTLL 199 (329)
Q Consensus 162 ~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~~~----~~etSAk~ 199 (329)
.++|++++.||+|+.+. .-.+++.+.++.. .+.+|+..
T Consensus 115 ~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~Pisa~~ 159 (270)
T cd01886 115 YNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQLPIGEED 159 (270)
T ss_pred cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceEEEeccccCC
Confidence 56899999999999764 2245666666642 56667664
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=4e-11 Score=119.30 Aligned_cols=138 Identities=18% Similarity=0.189 Sum_probs=90.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcC-------CCC-----------CCCCCceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASG-------QFS-----------QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~-------~~~-----------~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
.+..++|+++|.+++|||||+++|+.. .+. ....-|+......+..++.++.++||||+++|
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY 88 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence 467799999999999999999999851 110 01122333333345556678899999999877
Q ss_pred cchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC
Q psy2970 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK 158 (329)
Q Consensus 79 ~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~ 158 (329)
..........+|+++ +|+|+.+... ....+.+..+ .
T Consensus 89 ~~~~~~~~~~aD~~l-----------------------------------------lVvda~~g~~-~qt~e~l~~~-~- 124 (396)
T PRK12735 89 VKNMITGAAQMDGAI-----------------------------------------LVVSAADGPM-PQTREHILLA-R- 124 (396)
T ss_pred HHHHHhhhccCCEEE-----------------------------------------EEEECCCCCc-hhHHHHHHHH-H-
Confidence 544445566778888 9999876321 2222333322 2
Q ss_pred CcCCCCcEE-EEEEcCCCCChh--------hHHHHHHHhC-----CcEEEEeccch
Q psy2970 159 PQLIGIPIL-VLGNKRDLPNAL--------DEKELIDRIM-----IDFWITLTLLI 200 (329)
Q Consensus 159 ~~~~~iPIi-LVgNK~Dl~~~~--------e~~~l~~~~~-----~~~~etSAk~~ 200 (329)
..++|.+ ++.||+|+.+.. +.+++.+.++ ++++++||+++
T Consensus 125 --~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g 178 (396)
T PRK12735 125 --QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKA 178 (396)
T ss_pred --HcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhcc
Confidence 2467855 579999997431 3444455543 67999999985
|
|
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.7e-11 Score=126.42 Aligned_cols=127 Identities=20% Similarity=0.219 Sum_probs=89.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc--CCCC---------------CC-------CCCceeeeEEEeeCceEEEEEEecCC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS--GQFS---------------QD-------MIPTVGFNMRKITKGNVTIKVWDIGG 74 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~--~~~~---------------~~-------~~pTig~~~~~i~~~~~~l~I~DtpG 74 (329)
+.-+|+++|.+++|||||+++|+. +... .+ ...|+......++.+++++.+|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 456999999999999999999963 1110 00 01122233334677889999999999
Q ss_pred CccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHH
Q psy2970 75 QPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHA 154 (329)
Q Consensus 75 ~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~ 154 (329)
+++|......+++.+|+++ +|+|+++.-. .....++..
T Consensus 89 ~~df~~~~~~~l~~aD~aI-----------------------------------------lVvDa~~gv~-~~t~~l~~~ 126 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSAL-----------------------------------------MVIDAAKGVE-PQTRKLMEV 126 (526)
T ss_pred chhhHHHHHHHHHHCCEEE-----------------------------------------EEEecCCCCC-HHHHHHHHH
Confidence 9999887777899999999 9999987422 122333332
Q ss_pred HHhCCcCCCCcEEEEEEcCCCCChh---hHHHHHHHhCCc
Q psy2970 155 LIEKPQLIGIPILVLGNKRDLPNAL---DEKELIDRIMID 191 (329)
Q Consensus 155 i~~~~~~~~iPIiLVgNK~Dl~~~~---e~~~l~~~~~~~ 191 (329)
. . ..++|+++++||+|+.... -.+++.+.++.+
T Consensus 127 ~-~---~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~~ 162 (526)
T PRK00741 127 C-R---LRDTPIFTFINKLDRDGREPLELLDEIEEVLGIA 162 (526)
T ss_pred H-H---hcCCCEEEEEECCcccccCHHHHHHHHHHHhCCC
Confidence 2 2 3579999999999997653 246677777754
|
|
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.8e-11 Score=105.13 Aligned_cols=131 Identities=16% Similarity=0.220 Sum_probs=88.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCc----cccchHHHHhhccceeEeecc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQP----RFRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e----~~~~~~~~~~~~ad~iI~~~~ 97 (329)
||+++|+.|+|||||+++|.+.+.. |..|-...+. =.+.||||.- .+..-......+||.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~--~~KTq~i~~~--------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~---- 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR--YKKTQAIEYY--------DNTIDTPGEYIENPRFYHALIVTAQDADVVL---- 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC--cCccceeEec--------ccEEECChhheeCHHHHHHHHHHHhhCCEEE----
Confidence 7999999999999999999987753 3333333332 1368999942 11222233445677777
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN 177 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~ 177 (329)
++.|.+++.+. ..-.+... -+.|+|=|.||+|++.
T Consensus 69 -------------------------------------ll~dat~~~~~--~pP~fa~~------f~~pvIGVITK~Dl~~ 103 (143)
T PF10662_consen 69 -------------------------------------LLQDATEPRSV--FPPGFASM------FNKPVIGVITKIDLPS 103 (143)
T ss_pred -------------------------------------EEecCCCCCcc--CCchhhcc------cCCCEEEEEECccCcc
Confidence 99999986531 11111112 3579999999999992
Q ss_pred -h---hhHHHHHHHhCCc-EEEEeccchHHHHHHhhhhc
Q psy2970 178 -A---LDEKELIDRIMID-FWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 178 -~---~e~~~l~~~~~~~-~~etSAk~~~~~~~~l~~i~ 211 (329)
+ +.++++.+.-|+. .|++|+.++..++++.+.+.
T Consensus 104 ~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 104 DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 2 3455566666764 89999999999999877653
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.7e-11 Score=111.09 Aligned_cols=109 Identities=17% Similarity=0.133 Sum_probs=77.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC--CCC----------------CCCceeeeEE--Eee--------CceEEEEEEecC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQF--SQD----------------MIPTVGFNMR--KIT--------KGNVTIKVWDIG 73 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~--~~~----------------~~pTig~~~~--~i~--------~~~~~l~I~Dtp 73 (329)
+|+++|..++|||||+.+|+...- ... ..-|+..... ..+ ++.+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 689999999999999999974321 100 0111111111 112 347899999999
Q ss_pred CCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHH
Q psy2970 74 GQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELH 153 (329)
Q Consensus 74 G~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~ 153 (329)
|+++|......+++.+|+++ +|+|+++..+.+. ...+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~i-----------------------------------------lVvD~~~g~~~~t-~~~l~ 119 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGAL-----------------------------------------VVVDAVEGVCVQT-ETVLR 119 (222)
T ss_pred CccccHHHHHHHHHhcCeeE-----------------------------------------EEEECCCCCCHHH-HHHHH
Confidence 99999998899999999999 9999987654433 33333
Q ss_pred HHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 154 ALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 154 ~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
.... .++|+++|+||+|+.
T Consensus 120 ~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 120 QALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred HHHH----cCCCEEEEEECCCcc
Confidence 3322 357999999999986
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >KOG1423|consensus | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.1e-11 Score=113.20 Aligned_cols=159 Identities=16% Similarity=0.177 Sum_probs=100.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCceeeeEE-EeeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTVGFNMR-KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~--~~~~pTig~~~~-~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
.+.+.|+++|.||||||||.|++.+.+.. .....|+..... -+..++.++.++||||.-.-+.........+ +
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s--~-- 145 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMS--V-- 145 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHH--h--
Confidence 35689999999999999999999998875 223344444443 4688999999999999643222211111100 1
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccH--HHHHHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKL--EASRNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~--~~~~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
.|.+..+...+|++++|+|++++... ..+..-+++. .++|-++|.||
T Consensus 146 -------------------------lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y------s~ips~lvmnk 194 (379)
T KOG1423|consen 146 -------------------------LQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY------SKIPSILVMNK 194 (379)
T ss_pred -------------------------hhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH------hcCCceeeccc
Confidence 12223344555666699999974332 1222222222 56888999999
Q ss_pred CCCCChh-------------h----HHHHHHHhC-Cc----------------EEEEeccchHHHHHHhhhhc
Q psy2970 173 RDLPNAL-------------D----EKELIDRIM-ID----------------FWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 173 ~Dl~~~~-------------e----~~~l~~~~~-~~----------------~~etSAk~~~~~~~~l~~i~ 211 (329)
+|..... + .-++.+++- .+ +|.+||+.++..+++.+.+-
T Consensus 195 id~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLm 267 (379)
T KOG1423|consen 195 IDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLM 267 (379)
T ss_pred hhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHH
Confidence 9986541 0 112333332 33 79999999999998887763
|
|
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-10 Score=104.59 Aligned_cols=148 Identities=16% Similarity=0.254 Sum_probs=97.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCC----CCCCCCceeeeEEEeeCceEEEEEEecCCC----------ccccchHH
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQF----SQDMIPTVGFNMRKITKGNVTIKVWDIGGQ----------PRFRSMWE 83 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~----~~~~~pTig~~~~~i~~~~~~l~I~DtpG~----------e~~~~~~~ 83 (329)
.....|+++|.+|||||||||.+++++- +..+..|...++..++.+ +.+.|.||- +.+..+..
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~ 98 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIE 98 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHH
Confidence 3456999999999999999999999662 334455666677666555 789999993 44555566
Q ss_pred HHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCC
Q psy2970 84 RYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIG 163 (329)
Q Consensus 84 ~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~ 163 (329)
.|++.-..+. .+++++|+..+-. .....+-+.+. ..+
T Consensus 99 ~YL~~R~~L~--------------------------------------~vvlliD~r~~~~--~~D~em~~~l~---~~~ 135 (200)
T COG0218 99 EYLEKRANLK--------------------------------------GVVLLIDARHPPK--DLDREMIEFLL---ELG 135 (200)
T ss_pred HHHhhchhhe--------------------------------------EEEEEEECCCCCc--HHHHHHHHHHH---HcC
Confidence 6776532222 2338889865432 22223333333 258
Q ss_pred CcEEEEEEcCCCCChhh----HHHHHHHhCC----c--EEEEeccchHHHHHHhhhhc
Q psy2970 164 IPILVLGNKRDLPNALD----EKELIDRIMI----D--FWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 164 iPIiLVgNK~Dl~~~~e----~~~l~~~~~~----~--~~etSAk~~~~~~~~l~~i~ 211 (329)
+|++|++||+|..+..+ ...++++++. . .+..|+....+.+++...+.
T Consensus 136 i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~ 193 (200)
T COG0218 136 IPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKIL 193 (200)
T ss_pred CCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHH
Confidence 99999999999887633 3556655542 2 56677777666777665553
|
|
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.5e-11 Score=117.02 Aligned_cols=155 Identities=26% Similarity=0.366 Sum_probs=96.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC-CCCCC-ceeeeEEEee-CceEEEEEEecCCCccccchHHHHhhccceeEeecce
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFS-QDMIP-TVGFNMRKIT-KGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~-~~~~p-Tig~~~~~i~-~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~ 98 (329)
-|-+||.||+|||||++.+...+.. ..|.- |+-.+.--+. ...-.+.+-|.||... .|.-=. ++|+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIE----------GAs~G~-GLG~ 229 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIE----------GASEGV-GLGL 229 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCccccc----------ccccCC-CccH
Confidence 3568999999999999999987653 23332 2222222222 4455688999999532 222222 3444
Q ss_pred eeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCccc---HHHHHHHHHHHHhC-CcCCCCcEEEEEEcCC
Q psy2970 99 YIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDK---LEASRNELHALIEK-PQLIGIPILVLGNKRD 174 (329)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S---~~~~~~~l~~i~~~-~~~~~iPIiLVgNK~D 174 (329)
.++ +|+.|+..++ .|+|++..+. .+.......++... ....+.|.+||+||+|
T Consensus 230 ~FL-rHIERt~vL~----------------------hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD 286 (369)
T COG0536 230 RFL-RHIERTRVLL----------------------HVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKID 286 (369)
T ss_pred HHH-HHHHhhheeE----------------------EEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccC
Confidence 444 6777776666 8999986542 44544444444432 3457889999999999
Q ss_pred CCCh-hhHHHHHHHh----CCc-EEEEeccchHHHHHHhhhh
Q psy2970 175 LPNA-LDEKELIDRI----MID-FWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 175 l~~~-~e~~~l~~~~----~~~-~~etSAk~~~~~~~~l~~i 210 (329)
+... ++.+.+++.+ +.. ++.+||.+...++.+...+
T Consensus 287 ~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~ 328 (369)
T COG0536 287 LPLDEEELEELKKALAEALGWEVFYLISALTREGLDELLRAL 328 (369)
T ss_pred CCcCHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHH
Confidence 6544 5555555444 332 2229999966666665544
|
|
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.7e-11 Score=119.26 Aligned_cols=138 Identities=20% Similarity=0.216 Sum_probs=91.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCC----------------CC--CCCceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFS----------------QD--MIPTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~----------------~~--~~pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
.+..++|+++|.+++|||||+++|++.... .. ..-|+......+..++.++.+.||||..+|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 467899999999999999999999863110 00 112222223335556678889999998877
Q ss_pred cchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC
Q psy2970 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK 158 (329)
Q Consensus 79 ~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~ 158 (329)
.......+..+|+++ +|+|+.+.-. ......+..+ .
T Consensus 89 ~~~~~~~~~~~D~~i-----------------------------------------lVvda~~g~~-~qt~~~~~~~-~- 124 (409)
T CHL00071 89 VKNMITGAAQMDGAI-----------------------------------------LVVSAADGPM-PQTKEHILLA-K- 124 (409)
T ss_pred HHHHHHHHHhCCEEE-----------------------------------------EEEECCCCCc-HHHHHHHHHH-H-
Confidence 555555677888888 9999875321 2222333322 2
Q ss_pred CcCCCCc-EEEEEEcCCCCChh--------hHHHHHHHhC-----CcEEEEeccch
Q psy2970 159 PQLIGIP-ILVLGNKRDLPNAL--------DEKELIDRIM-----IDFWITLTLLI 200 (329)
Q Consensus 159 ~~~~~iP-IiLVgNK~Dl~~~~--------e~~~l~~~~~-----~~~~etSAk~~ 200 (329)
..++| ++++.||+|+.+.. ++.++.+..+ ++++.+||.++
T Consensus 125 --~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g 178 (409)
T CHL00071 125 --QVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLA 178 (409)
T ss_pred --HcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhc
Confidence 24678 77899999998642 2333444443 67999999884
|
|
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-10 Score=115.52 Aligned_cols=148 Identities=20% Similarity=0.207 Sum_probs=103.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCceeeeEEEeeCc-eEEEEEEecCCCccc--cchHH------HHhhcc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTVGFNMRKITKG-NVTIKVWDIGGQPRF--RSMWE------RYCRGV 89 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~--~~~~pTig~~~~~i~~~-~~~l~I~DtpG~e~~--~~~~~------~~~~~a 89 (329)
..|.++|..|+|||||+|++++.... .....|.....+.+... +..+.+-||.|..+- +.+.. ....++
T Consensus 193 p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~a 272 (411)
T COG2262 193 PLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEA 272 (411)
T ss_pred CeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhhcC
Confidence 58999999999999999999976543 44456666666665544 578889999996432 11221 134578
Q ss_pred ceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEE
Q psy2970 90 NAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVL 169 (329)
Q Consensus 90 d~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLV 169 (329)
|.++ .|+|+++|...+.+.. ..+++......++|+++|
T Consensus 273 Dlll-----------------------------------------hVVDaSdp~~~~~~~~-v~~vL~el~~~~~p~i~v 310 (411)
T COG2262 273 DLLL-----------------------------------------HVVDASDPEILEKLEA-VEDVLAEIGADEIPIILV 310 (411)
T ss_pred CEEE-----------------------------------------EEeecCChhHHHHHHH-HHHHHHHcCCCCCCEEEE
Confidence 8888 9999999954444433 333444434567999999
Q ss_pred EEcCCCCChhh-HHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 170 GNKRDLPNALD-EKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 170 gNK~Dl~~~~e-~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.||+|+....+ ...+..... ..+.+||+++.+++.+...+.
T Consensus 311 ~NKiD~~~~~~~~~~~~~~~~-~~v~iSA~~~~gl~~L~~~i~ 352 (411)
T COG2262 311 LNKIDLLEDEEILAELERGSP-NPVFISAKTGEGLDLLRERII 352 (411)
T ss_pred EecccccCchhhhhhhhhcCC-CeEEEEeccCcCHHHHHHHHH
Confidence 99999776544 333333332 589999999888888877664
|
|
| >KOG0082|consensus | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.9e-11 Score=119.86 Aligned_cols=87 Identities=23% Similarity=0.458 Sum_probs=74.9
Q ss_pred CCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhh
Q psy2970 50 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLL 129 (329)
Q Consensus 50 ~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (329)
.||.|+.-..++.++..+.++|++||..-+..|.+++.++++++
T Consensus 180 ~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~avi------------------------------------ 223 (354)
T KOG0082|consen 180 VPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVI------------------------------------ 223 (354)
T ss_pred cCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEE------------------------------------
Confidence 46677777778888899999999999999999999999999999
Q ss_pred cceeEEEEECCC----------cccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC
Q psy2970 130 FQLIKYMVDAAD----------TDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN 177 (329)
Q Consensus 130 ~~~~~lV~Dvt~----------~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~ 177 (329)
+|+++++ .+.+.+...++..+.+.+++.+++++|++||.||-.
T Consensus 224 -----F~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLFe 276 (354)
T KOG0082|consen 224 -----FCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDLFE 276 (354)
T ss_pred -----EEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHHHH
Confidence 5555543 356788899999999999999999999999999844
|
|
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-10 Score=118.10 Aligned_cols=148 Identities=14% Similarity=0.088 Sum_probs=92.8
Q ss_pred HHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCC--CCC---------------------------------CCCCceeee
Q psy2970 12 FKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQ--FSQ---------------------------------DMIPTVGFN 56 (329)
Q Consensus 12 ~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~--~~~---------------------------------~~~pTig~~ 56 (329)
......+..++|+++|..++|||||+.+|+... ... ...-|+...
T Consensus 19 ~~~~~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~ 98 (474)
T PRK05124 19 LHAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVA 98 (474)
T ss_pred HhhccccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEee
Confidence 333345788999999999999999999996421 110 011233444
Q ss_pred EEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEE
Q psy2970 57 MRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYM 136 (329)
Q Consensus 57 ~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV 136 (329)
+..+..++.++.++||||+++|..........+|+++ +|
T Consensus 99 ~~~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~al-----------------------------------------lV 137 (474)
T PRK05124 99 YRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAI-----------------------------------------LL 137 (474)
T ss_pred EEEeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEE-----------------------------------------EE
Confidence 4456677788999999999888554444568888888 99
Q ss_pred EECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh--hh-------HHHHHHHhC----CcEEEEeccchHHH
Q psy2970 137 VDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LD-------EKELIDRIM----IDFWITLTLLIRWC 203 (329)
Q Consensus 137 ~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~--~e-------~~~l~~~~~----~~~~etSAk~~~~~ 203 (329)
+|+.+.-. ...... ..+.... ...|++|++||+|+.+. .. ...+.+.++ .+++.+||+++.++
T Consensus 138 VDa~~G~~-~qt~~~-~~l~~~l--g~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni 213 (474)
T PRK05124 138 IDARKGVL-DQTRRH-SFIATLL--GIKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNV 213 (474)
T ss_pred EECCCCcc-ccchHH-HHHHHHh--CCCceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCc
Confidence 99875321 101111 1111111 12478999999999742 11 122223333 67999999995554
Q ss_pred H
Q psy2970 204 E 204 (329)
Q Consensus 204 ~ 204 (329)
.
T Consensus 214 ~ 214 (474)
T PRK05124 214 V 214 (474)
T ss_pred c
Confidence 3
|
|
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-10 Score=119.65 Aligned_cols=127 Identities=18% Similarity=0.236 Sum_probs=86.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc--CCCCC----------------------CCCCceeeeEEEeeCceEEEEEEecC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS--GQFSQ----------------------DMIPTVGFNMRKITKGNVTIKVWDIG 73 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~--~~~~~----------------------~~~pTig~~~~~i~~~~~~l~I~Dtp 73 (329)
.+..+|+++|.+++|||||+++++. +.... ...-|+......++.+++.+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4567999999999999999999852 21110 00112222233467888999999999
Q ss_pred CCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHH
Q psy2970 74 GQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELH 153 (329)
Q Consensus 74 G~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~ 153 (329)
|+.+|.......++.+|+++ +|+|.++.- ......++.
T Consensus 89 G~~df~~~~~~~l~~aD~aI-----------------------------------------lVvDa~~gv-~~~t~~l~~ 126 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCL-----------------------------------------MVIDAAKGV-ETRTRKLME 126 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEE-----------------------------------------EEEECCCCC-CHHHHHHHH
Confidence 99988877777889999999 999998631 112223332
Q ss_pred HHHhCCcCCCCcEEEEEEcCCCCCh--hh-HHHHHHHhCC
Q psy2970 154 ALIEKPQLIGIPILVLGNKRDLPNA--LD-EKELIDRIMI 190 (329)
Q Consensus 154 ~i~~~~~~~~iPIiLVgNK~Dl~~~--~e-~~~l~~~~~~ 190 (329)
..+ ..++|+++++||+|+... .+ .+++.+.++.
T Consensus 127 -~~~---~~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~ 162 (527)
T TIGR00503 127 -VTR---LRDTPIFTFMNKLDRDIRDPLELLDEVENELKI 162 (527)
T ss_pred -HHH---hcCCCEEEEEECccccCCCHHHHHHHHHHHhCC
Confidence 333 257899999999999753 22 4555566554
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.22 E-value=2e-10 Score=121.75 Aligned_cols=124 Identities=18% Similarity=0.119 Sum_probs=87.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC--CCC------C------------CCCCceeeeEEEeeCceEEEEEEecCCCccccc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG--QFS------Q------------DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS 80 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~--~~~------~------------~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~ 80 (329)
-+|+++|.+|+|||||+++|... ... . ....|+......+..++.++.+|||||+.++..
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~ 90 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTV 90 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhH
Confidence 48999999999999999999631 110 0 112233333445667788999999999999888
Q ss_pred hHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc
Q psy2970 81 MWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ 160 (329)
Q Consensus 81 ~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~ 160 (329)
.....++.+|+++ +|+|+++....+. ...+..+.
T Consensus 91 ~~~~~l~~~D~~i-----------------------------------------lVvda~~g~~~~~-~~~~~~~~---- 124 (689)
T TIGR00484 91 EVERSLRVLDGAV-----------------------------------------AVLDAVGGVQPQS-ETVWRQAN---- 124 (689)
T ss_pred HHHHHHHHhCEEE-----------------------------------------EEEeCCCCCChhH-HHHHHHHH----
Confidence 8888999999999 9999987544332 22333332
Q ss_pred CCCCcEEEEEEcCCCCChh---hHHHHHHHhCC
Q psy2970 161 LIGIPILVLGNKRDLPNAL---DEKELIDRIMI 190 (329)
Q Consensus 161 ~~~iPIiLVgNK~Dl~~~~---e~~~l~~~~~~ 190 (329)
..++|+++++||+|+.++. ..+++.+.++.
T Consensus 125 ~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~ 157 (689)
T TIGR00484 125 RYEVPRIAFVNKMDKTGANFLRVVNQIKQRLGA 157 (689)
T ss_pred HcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 2468999999999998642 34566666654
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.7e-10 Score=121.08 Aligned_cols=152 Identities=15% Similarity=0.094 Sum_probs=94.8
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCC--CC-----------C----------------------CCCc
Q psy2970 8 ILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQF--SQ-----------D----------------------MIPT 52 (329)
Q Consensus 8 ~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~--~~-----------~----------------------~~pT 52 (329)
+..++.....++.++|+++|.+++|||||+++|+...- .. . ..-|
T Consensus 12 ~~~~~~~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~T 91 (632)
T PRK05506 12 ILAYLAQHERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGIT 91 (632)
T ss_pred HHHHHhhccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcC
Confidence 34455555567889999999999999999999985321 10 0 0112
Q ss_pred eeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcce
Q psy2970 53 VGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQL 132 (329)
Q Consensus 53 ig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (329)
+...+..+..++.++.++||||+++|..........+|+++
T Consensus 92 id~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~l--------------------------------------- 132 (632)
T PRK05506 92 IDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAI--------------------------------------- 132 (632)
T ss_pred ceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEE---------------------------------------
Confidence 22233345566778899999999887544444567888888
Q ss_pred eEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC--hhh-------HHHHHHHhC---CcEEEEeccch
Q psy2970 133 IKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN--ALD-------EKELIDRIM---IDFWITLTLLI 200 (329)
Q Consensus 133 ~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~--~~e-------~~~l~~~~~---~~~~etSAk~~ 200 (329)
+|+|+.+... ....+.+. +... ....|++|+.||+|+.+ +.. ..++.++++ .+++.+||+++
T Consensus 133 --lVvda~~g~~-~~t~e~~~-~~~~--~~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g 206 (632)
T PRK05506 133 --ILVDARKGVL-TQTRRHSF-IASL--LGIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKG 206 (632)
T ss_pred --EEEECCCCcc-ccCHHHHH-HHHH--hCCCeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccC
Confidence 9999875321 11111111 1111 12257889999999974 221 222334445 35999999995
Q ss_pred HHHH
Q psy2970 201 RWCE 204 (329)
Q Consensus 201 ~~~~ 204 (329)
.+.+
T Consensus 207 ~ni~ 210 (632)
T PRK05506 207 DNVV 210 (632)
T ss_pred CCcc
Confidence 5544
|
|
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.5e-10 Score=116.55 Aligned_cols=138 Identities=17% Similarity=0.199 Sum_probs=91.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCC------CC------------CCCCCceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQ------FS------------QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~------~~------------~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
.+..++|+++|..++|||||+++|+... .. ....-|+......++.++.++.++||||+++|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 4667999999999999999999998511 10 11112333333345566778999999999988
Q ss_pred cchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC
Q psy2970 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK 158 (329)
Q Consensus 79 ~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~ 158 (329)
..........+|+.+ +|+|+.+-.. ....+.+..+ .
T Consensus 158 ~~~~~~g~~~aD~ai-----------------------------------------lVVda~~G~~-~qt~e~~~~~-~- 193 (478)
T PLN03126 158 VKNMITGAAQMDGAI-----------------------------------------LVVSGADGPM-PQTKEHILLA-K- 193 (478)
T ss_pred HHHHHHHHhhCCEEE-----------------------------------------EEEECCCCCc-HHHHHHHHHH-H-
Confidence 655555667788888 9999876422 2223333333 2
Q ss_pred CcCCCCc-EEEEEEcCCCCChh--------hHHHHHHHh-----CCcEEEEeccch
Q psy2970 159 PQLIGIP-ILVLGNKRDLPNAL--------DEKELIDRI-----MIDFWITLTLLI 200 (329)
Q Consensus 159 ~~~~~iP-IiLVgNK~Dl~~~~--------e~~~l~~~~-----~~~~~etSAk~~ 200 (329)
..++| ++++.||+|+.+.. +..++.+.+ .++++.+||.+.
T Consensus 194 --~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g 247 (478)
T PLN03126 194 --QVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLA 247 (478)
T ss_pred --HcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEcccc
Confidence 24678 77899999997642 233344443 467999999874
|
|
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.8e-12 Score=100.82 Aligned_cols=112 Identities=15% Similarity=0.113 Sum_probs=80.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCC-CceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeeccee
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMI-PTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLY 99 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~-pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~ 99 (329)
+||+++|+.|||||+|+.++....+...+. +|++ +......+.+.++.++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~------ 51 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVL------ 51 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEE------
Confidence 589999999999999999998888765444 5555 1222234566677777
Q ss_pred eehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChh
Q psy2970 100 IVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL 179 (329)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~ 179 (329)
.|+|.+++++++.. |...+... ...++|+++++||.|+.+..
T Consensus 52 -----------------------------------~v~~~~~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~~ 93 (124)
T smart00010 52 -----------------------------------QCWRVDDRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEER 93 (124)
T ss_pred -----------------------------------EEEEccCHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhhC
Confidence 89999999988765 55555443 34678999999999985432
Q ss_pred hHHHHHHHhCCcEEEEeccchHH
Q psy2970 180 DEKELIDRIMIDFWITLTLLIRW 202 (329)
Q Consensus 180 e~~~l~~~~~~~~~etSAk~~~~ 202 (329)
++.++.+.+++++|+++...
T Consensus 94 ---~~~~~~~~~~~~~s~~~~~~ 113 (124)
T smart00010 94 ---QVATEEGLEFAETSAKTPEE 113 (124)
T ss_pred ---cCCHHHHHHHHHHhCCCcch
Confidence 34445555678888888543
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.7e-10 Score=112.82 Aligned_cols=73 Identities=23% Similarity=0.413 Sum_probs=51.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCC-CC-----CCceeeeEEE-------------------ee-CceEEEEEEecCC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQ-DM-----IPTVGFNMRK-------------------IT-KGNVTIKVWDIGG 74 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~-~~-----~pTig~~~~~-------------------i~-~~~~~l~I~DtpG 74 (329)
+||.++|.||||||||+|++++.++.. .| .|++|..... .+ ....++++|||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999999877642 22 3555543321 01 2336799999999
Q ss_pred Cc----cccchHHHH---hhccceeE
Q psy2970 75 QP----RFRSMWERY---CRGVNAIV 93 (329)
Q Consensus 75 ~e----~~~~~~~~~---~~~ad~iI 93 (329)
.. ....+...+ ++++|+++
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll 107 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALI 107 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEE
Confidence 53 334444455 88999999
|
|
| >KOG0090|consensus | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-10 Score=107.14 Aligned_cols=125 Identities=24% Similarity=0.337 Sum_probs=91.0
Q ss_pred hcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhh---ccc
Q psy2970 14 SLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCR---GVN 90 (329)
Q Consensus 14 ~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~---~ad 90 (329)
...++.+-.|+++|+.++|||+|.-++..+.+.+ ..+.++.+......+.-.+++.|.||+++.+.....++. .+.
T Consensus 32 ~~rrs~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~-TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~ak 110 (238)
T KOG0090|consen 32 LFRRSKQNAVLLVGLSDSGKTSLFTQLITGSHRG-TVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAK 110 (238)
T ss_pred HHhhccCCcEEEEecCCCCceeeeeehhcCCccC-eeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccce
Confidence 3334455689999999999999999999886542 233344443334444445899999999999888877887 688
Q ss_pred eeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECC-CcccHHHHHHHHHHHHhCC--cCCCCcEE
Q psy2970 91 AIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAA-DTDKLEASRNELHALIEKP--QLIGIPIL 167 (329)
Q Consensus 91 ~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt-~~~S~~~~~~~l~~i~~~~--~~~~iPIi 167 (329)
+++ ||+|.. .+.....+.+.+-.++-.. ...++|++
T Consensus 111 aiV-----------------------------------------FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vL 149 (238)
T KOG0090|consen 111 AIV-----------------------------------------FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVL 149 (238)
T ss_pred eEE-----------------------------------------EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEE
Confidence 888 999954 4445666666666665543 35789999
Q ss_pred EEEEcCCCCChhh
Q psy2970 168 VLGNKRDLPNALD 180 (329)
Q Consensus 168 LVgNK~Dl~~~~e 180 (329)
+.+||.|+.-+..
T Consensus 150 IaCNKqDl~tAkt 162 (238)
T KOG0090|consen 150 IACNKQDLFTAKT 162 (238)
T ss_pred EEecchhhhhcCc
Confidence 9999999976533
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.6e-10 Score=98.36 Aligned_cols=159 Identities=17% Similarity=0.059 Sum_probs=88.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCC-C---CCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQ-D---MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~-~---~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
++|+++|.+|||||||+|.+++.+... . ...|..........++..+.++||||..+.........
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~---------- 70 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLS---------- 70 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHH----------
Confidence 479999999999999999999876431 1 12344444444445667899999999755421100000
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc-cHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD-KLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~-S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+.+.+.+.... ...+++++|+|+.+.. ......+++.++... ..-.++++|.|+.|.
T Consensus 71 ------~~i~~~~~~~~--------------~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~--~~~~~~ivv~T~~d~ 128 (196)
T cd01852 71 ------KEIVRCLSLSA--------------PGPHAFLLVVPLGRFTEEEEQAVETLQELFGE--KVLDHTIVLFTRGDD 128 (196)
T ss_pred ------HHHHHHHHhcC--------------CCCEEEEEEEECCCcCHHHHHHHHHHHHHhCh--HhHhcEEEEEECccc
Confidence 00001000000 1223444999987632 122333444444321 122478899999986
Q ss_pred CCh-----------hhHHHHHHHhCCcEEEEec-----cchHHHHHHhhhhc
Q psy2970 176 PNA-----------LDEKELIDRIMIDFWITLT-----LLIRWCESFLHHFG 211 (329)
Q Consensus 176 ~~~-----------~e~~~l~~~~~~~~~etSA-----k~~~~~~~~l~~i~ 211 (329)
... ...+.+.++.+-.+...+. ......+++++.+.
T Consensus 129 l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~ 180 (196)
T cd01852 129 LEGGTLEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVE 180 (196)
T ss_pred cCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHH
Confidence 542 3355566665655544443 34666666666654
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.9e-10 Score=116.50 Aligned_cols=141 Identities=16% Similarity=0.153 Sum_probs=98.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCC--CC-------------------------------CCCCCceeeeEEEeeCc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQ--FS-------------------------------QDMIPTVGFNMRKITKG 63 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~--~~-------------------------------~~~~pTig~~~~~i~~~ 63 (329)
.+..++|+++|..++|||||+-+|+..- .. ....-|+...+..+..+
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 4677999999999999999999886310 00 11123444445556778
Q ss_pred eEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc
Q psy2970 64 NVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD 143 (329)
Q Consensus 64 ~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~ 143 (329)
+..+.+.||||+++|.......+..+|+.+ +|+|+++ .
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aI-----------------------------------------lVVda~~-G 121 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAV-----------------------------------------LIIDSTT-G 121 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEE-----------------------------------------EEEEccc-C
Confidence 889999999999999877777889999999 9999986 2
Q ss_pred cHH-------HHHHHHHHHHhCCcCCCCc-EEEEEEcCCCCCh-----------hhHHHHHHHhC-----CcEEEEeccc
Q psy2970 144 KLE-------ASRNELHALIEKPQLIGIP-ILVLGNKRDLPNA-----------LDEKELIDRIM-----IDFWITLTLL 199 (329)
Q Consensus 144 S~~-------~~~~~l~~i~~~~~~~~iP-IiLVgNK~Dl~~~-----------~e~~~l~~~~~-----~~~~etSAk~ 199 (329)
.|+ ...+.+..+ . ..++| ++|++||+|+.+. .+.+++.++.+ ++|+++||++
T Consensus 122 ~~e~g~~~~~qT~eh~~~~-~---~~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~ 197 (447)
T PLN00043 122 GFEAGISKDGQTREHALLA-F---TLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFE 197 (447)
T ss_pred ceecccCCCchHHHHHHHH-H---HcCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccc
Confidence 232 222222221 1 24564 7889999998621 34556666666 6799999999
Q ss_pred hHHH
Q psy2970 200 IRWC 203 (329)
Q Consensus 200 ~~~~ 203 (329)
+.+.
T Consensus 198 G~ni 201 (447)
T PLN00043 198 GDNM 201 (447)
T ss_pred cccc
Confidence 5443
|
|
| >KOG1191|consensus | Back alignment and domain information |
|---|
Probab=99.15 E-value=4e-10 Score=113.73 Aligned_cols=154 Identities=16% Similarity=0.151 Sum_probs=99.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCceeeeEE-EeeCceEEEEEEecCCCccccc---------hHHH
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTVGFNMR-KITKGNVTIKVWDIGGQPRFRS---------MWER 84 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~--~~~~pTig~~~~-~i~~~~~~l~I~DtpG~e~~~~---------~~~~ 84 (329)
.++.++|+++|+||||||||+|++.+.+.. ....-|+.+.+. .++.+++++.+.||+|...-.. ....
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHH
Confidence 456799999999999999999999988763 222223333333 4788999999999999654111 1122
Q ss_pred HhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEEC--CCcccHHHHHHHHHHHHhC----
Q psy2970 85 YCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDA--ADTDKLEASRNELHALIEK---- 158 (329)
Q Consensus 85 ~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dv--t~~~S~~~~~~~l~~i~~~---- 158 (329)
..+.+|.++ +|+|+ ++.++-..+.+.+...-..
T Consensus 345 ~~~~advi~-----------------------------------------~vvda~~~~t~sd~~i~~~l~~~~~g~~~~ 383 (531)
T KOG1191|consen 345 RIERADVIL-----------------------------------------LVVDAEESDTESDLKIARILETEGVGLVVI 383 (531)
T ss_pred HHhhcCEEE-----------------------------------------EEecccccccccchHHHHHHHHhccceEEE
Confidence 344555555 99999 4444434444444443221
Q ss_pred -CcCCCCcEEEEEEcCCCCCh-hhHHH----HHHHhC---C-cEEEEeccchHHHHHHhhhhc
Q psy2970 159 -PQLIGIPILVLGNKRDLPNA-LDEKE----LIDRIM---I-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 159 -~~~~~iPIiLVgNK~Dl~~~-~e~~~----l~~~~~---~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
....+-|++++.||+|+... .+... +....+ . ...++|+++.++++.+...+.
T Consensus 384 ~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all 446 (531)
T KOG1191|consen 384 VNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALL 446 (531)
T ss_pred eccccccceEEEechhhccCccccccCCceeccccccCcccceEEEeeechhhhHHHHHHHHH
Confidence 12245789999999999876 22111 222222 2 356799999999999887764
|
|
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.1e-10 Score=113.35 Aligned_cols=139 Identities=16% Similarity=0.109 Sum_probs=87.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC--CCC---------------------------------CCCCceeeeEEEeeCceE
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQ--FSQ---------------------------------DMIPTVGFNMRKITKGNV 65 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~--~~~---------------------------------~~~pTig~~~~~i~~~~~ 65 (329)
++|+++|..++|||||+.+|+... ... ...-|+...+..+..++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 589999999999999999996321 100 011223333444566777
Q ss_pred EEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccH
Q psy2970 66 TIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKL 145 (329)
Q Consensus 66 ~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~ 145 (329)
++.++||||+++|.......+..+|+++ +|+|+.....
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~al-----------------------------------------lVVda~~G~~- 118 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAV-----------------------------------------LLVDARKGVL- 118 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEE-----------------------------------------EEEECCCCCc-
Confidence 8999999999988554455677888888 9999875321
Q ss_pred HHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChh---------hHHHHHHHhC---CcEEEEeccchHHHH
Q psy2970 146 EASRNELHALIEKPQLIGIPILVLGNKRDLPNAL---------DEKELIDRIM---IDFWITLTLLIRWCE 204 (329)
Q Consensus 146 ~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~---------e~~~l~~~~~---~~~~etSAk~~~~~~ 204 (329)
....+.+. +.... ...+++++.||+|+.+.. +..++.+.++ ++++++||+++.+.+
T Consensus 119 ~qt~~~~~-~~~~~--~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~ 186 (406)
T TIGR02034 119 EQTRRHSY-IASLL--GIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVV 186 (406)
T ss_pred cccHHHHH-HHHHc--CCCcEEEEEEecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCc
Confidence 11111111 11211 123688999999997521 1222334444 469999999965443
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.7e-10 Score=112.44 Aligned_cols=138 Identities=17% Similarity=0.167 Sum_probs=89.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCC------------------CCCCCceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFS------------------QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~------------------~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
.+..++|+++|..++|||||+++|+..... ....-|+......+..++.++.+.||||..+|
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 467899999999999999999999862100 01122333333345556778899999999877
Q ss_pred cchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC
Q psy2970 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK 158 (329)
Q Consensus 79 ~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~ 158 (329)
..........+|+++ +|+|+.+... ......+..+ .
T Consensus 89 ~~~~~~~~~~aD~~l-----------------------------------------lVVDa~~g~~-~qt~~~~~~~-~- 124 (396)
T PRK00049 89 VKNMITGAAQMDGAI-----------------------------------------LVVSAADGPM-PQTREHILLA-R- 124 (396)
T ss_pred HHHHHhhhccCCEEE-----------------------------------------EEEECCCCCc-hHHHHHHHHH-H-
Confidence 555455567788888 9999876421 2222333322 2
Q ss_pred CcCCCCcEE-EEEEcCCCCChhh--------HHHHHHHh-----CCcEEEEeccch
Q psy2970 159 PQLIGIPIL-VLGNKRDLPNALD--------EKELIDRI-----MIDFWITLTLLI 200 (329)
Q Consensus 159 ~~~~~iPIi-LVgNK~Dl~~~~e--------~~~l~~~~-----~~~~~etSAk~~ 200 (329)
..++|++ ++.||+|+.+..+ ..++...+ .++++.+||++.
T Consensus 125 --~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g 178 (396)
T PRK00049 125 --QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKA 178 (396)
T ss_pred --HcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccc
Confidence 2467875 5899999975322 22222222 267999999873
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.3e-10 Score=113.26 Aligned_cols=137 Identities=17% Similarity=0.158 Sum_probs=87.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcC------CC----------C--CCCCCceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASG------QF----------S--QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~------~~----------~--~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
.+..++|+++|..++|||||+++|.+. .. . ....-|+......++.++.++.+.||||..+|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 456799999999999999999999621 10 0 11223444444456667778999999999877
Q ss_pred cchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC
Q psy2970 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK 158 (329)
Q Consensus 79 ~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~ 158 (329)
..........+|+++ +|+|..+... ....+.+..+ .
T Consensus 138 ~~~~~~g~~~aD~al-----------------------------------------lVVda~~g~~-~qt~e~l~~~-~- 173 (447)
T PLN03127 138 VKNMITGAAQMDGGI-----------------------------------------LVVSAPDGPM-PQTKEHILLA-R- 173 (447)
T ss_pred HHHHHHHHhhCCEEE-----------------------------------------EEEECCCCCc-hhHHHHHHHH-H-
Confidence 544444455678888 9999875421 2222222222 2
Q ss_pred CcCCCCc-EEEEEEcCCCCChhh--------HHHHHHHh-----CCcEEEEeccc
Q psy2970 159 PQLIGIP-ILVLGNKRDLPNALD--------EKELIDRI-----MIDFWITLTLL 199 (329)
Q Consensus 159 ~~~~~iP-IiLVgNK~Dl~~~~e--------~~~l~~~~-----~~~~~etSAk~ 199 (329)
..++| ++++.||+|+.+..+ ..++...+ .++++.+||.+
T Consensus 174 --~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~s 226 (447)
T PLN03127 174 --QVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALS 226 (447)
T ss_pred --HcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccce
Confidence 24688 478899999986422 11222222 26788888864
|
|
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.8e-10 Score=107.52 Aligned_cols=182 Identities=16% Similarity=0.137 Sum_probs=107.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCC-ceeeeEEEeeCceEEEEEEecCCCccc----c---chHHHHhhccc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFS-QDMIP-TVGFNMRKITKGNVTIKVWDIGGQPRF----R---SMWERYCRGVN 90 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~p-Tig~~~~~i~~~~~~l~I~DtpG~e~~----~---~~~~~~~~~ad 90 (329)
.-+++++|.|+||||||++++++.+.. ..|.- |....-..+.+++.++++.|+||...- + ...-...+.||
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~AD 142 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNAD 142 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCC
Confidence 468999999999999999999987653 34443 333333447899999999999985322 1 23345678899
Q ss_pred eeEeeccee-------eehhccccccccccCCC-cCCCCchhhhhhhcceeEEEEE--CCCcccHHHHHHHHHHH-----
Q psy2970 91 AIVWTGGLY-------IVSKHIKRSAILYYEPV-DLGVSGPMWLSLLFQLIKYMVD--AADTDKLEASRNELHAL----- 155 (329)
Q Consensus 91 ~iI~~~~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lV~D--vt~~~S~~~~~~~l~~i----- 155 (329)
.+++++.++ .+.+.+.+..+.+.+.| +..+-. .....+.+.-- +++ -..+.++..+.+.
T Consensus 143 lIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~k-----k~~gGI~i~~t~~l~~-~d~~~ir~iL~Ey~I~nA 216 (365)
T COG1163 143 LIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKK-----KESGGIRINGTGPLTH-LDEDTVRAILREYRIHNA 216 (365)
T ss_pred EEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEE-----eccCCEEEeccccccc-CCHHHHHHHHHHhCcccc
Confidence 999554444 12223334444443332 211100 00111111110 000 0112222222221
Q ss_pred ----------------HhCCcCCCCcEEEEEEcCCCCChhhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 156 ----------------IEKPQLIGIPILVLGNKRDLPNALDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 156 ----------------~~~~~~~~iPIiLVgNK~Dl~~~~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+.. +-.-+|.++|.||+|+...++.+.+.+.. ..+.+||+..-+.+++.+.+
T Consensus 217 ~V~Ir~dvTlDd~id~l~~-nrvY~p~l~v~NKiD~~~~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i 284 (365)
T COG1163 217 DVLIREDVTLDDLIDALEG-NRVYKPALYVVNKIDLPGLEELERLARKP--NSVPISAKKGINLDELKERI 284 (365)
T ss_pred eEEEecCCcHHHHHHHHhh-cceeeeeEEEEecccccCHHHHHHHHhcc--ceEEEecccCCCHHHHHHHH
Confidence 111 01247999999999999988888888777 88999999966666666554
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-09 Score=116.53 Aligned_cols=113 Identities=19% Similarity=0.160 Sum_probs=80.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC---------------CCCC---CCCCceeeeEE----EeeCceEEEEEEecCCCc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG---------------QFSQ---DMIPTVGFNMR----KITKGNVTIKVWDIGGQP 76 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~---------------~~~~---~~~pTig~~~~----~i~~~~~~l~I~DtpG~e 76 (329)
+-.+|+++|..++|||||+++|+.. ++.+ ....|+..... .++.+++.+.+|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 4469999999999999999999742 2211 12335443322 256778999999999999
Q ss_pred cccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHH
Q psy2970 77 RFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALI 156 (329)
Q Consensus 77 ~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~ 156 (329)
+|.......++.+|+++ +|+|+.+.-..+. ...+....
T Consensus 98 ~f~~~~~~al~~aD~~l-----------------------------------------lVvda~~g~~~~t-~~~~~~~~ 135 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAI-----------------------------------------VVVCAVEGVMPQT-ETVLRQAL 135 (720)
T ss_pred ccHHHHHHHHHhcCEEE-----------------------------------------EEEecCCCCCccH-HHHHHHHH
Confidence 99887788999999999 9999876321111 22222222
Q ss_pred hCCcCCCCcEEEEEEcCCCCC
Q psy2970 157 EKPQLIGIPILVLGNKRDLPN 177 (329)
Q Consensus 157 ~~~~~~~iPIiLVgNK~Dl~~ 177 (329)
..++|+++++||+|...
T Consensus 136 ----~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 136 ----KENVKPVLFINKVDRLI 152 (720)
T ss_pred ----HcCCCEEEEEEChhccc
Confidence 24578889999999875
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.9e-09 Score=107.86 Aligned_cols=142 Identities=15% Similarity=0.149 Sum_probs=93.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHc--CCCC-------------------------------CCCCCceeeeEEEeeCc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIAS--GQFS-------------------------------QDMIPTVGFNMRKITKG 63 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~--~~~~-------------------------------~~~~pTig~~~~~i~~~ 63 (329)
.+..++|+++|..++|||||+.+|+. +... ....-|+...+..++.+
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 46789999999999999999999964 1100 11123444445556778
Q ss_pred eEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc
Q psy2970 64 NVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD 143 (329)
Q Consensus 64 ~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~ 143 (329)
+..+.+.||||+++|..........+|+++ +|+|+++..
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ai-----------------------------------------lVVda~~G~ 122 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAI-----------------------------------------LVVASTAGE 122 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEE-----------------------------------------EEEEcCCCc
Confidence 889999999999998766666778888888 999987532
Q ss_pred ---cH---HHHHHHHHHHHhCCcCCCCc-EEEEEEcCCCCC----h-------hhHHHHHHHhC-----CcEEEEeccch
Q psy2970 144 ---KL---EASRNELHALIEKPQLIGIP-ILVLGNKRDLPN----A-------LDEKELIDRIM-----IDFWITLTLLI 200 (329)
Q Consensus 144 ---S~---~~~~~~l~~i~~~~~~~~iP-IiLVgNK~Dl~~----~-------~e~~~l~~~~~-----~~~~etSAk~~ 200 (329)
.| ....+.+..+ . ..++| ++++.||+|.+. + .+..++.+..+ ++++.+||.++
T Consensus 123 ~e~~~~~~~qT~eh~~~~-~---~~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g 198 (446)
T PTZ00141 123 FEAGISKDGQTREHALLA-F---TLGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQG 198 (446)
T ss_pred eecccCCCccHHHHHHHH-H---HcCCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccC
Confidence 01 1222222222 2 24666 678999999532 1 22333333333 57999999995
Q ss_pred HHH
Q psy2970 201 RWC 203 (329)
Q Consensus 201 ~~~ 203 (329)
.+.
T Consensus 199 ~ni 201 (446)
T PTZ00141 199 DNM 201 (446)
T ss_pred CCc
Confidence 443
|
|
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.4e-09 Score=112.50 Aligned_cols=126 Identities=21% Similarity=0.145 Sum_probs=86.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC--CC------C------------CCCCCceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG--QF------S------------QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~--~~------~------------~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
+-.+|.++|.+++|||||+++|... .. . ....-|+......+..++.++.++||||..++
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f 86 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF 86 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH
Confidence 4468999999999999999999642 10 0 01122333333445667889999999999888
Q ss_pred cchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC
Q psy2970 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK 158 (329)
Q Consensus 79 ~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~ 158 (329)
...+...++.+|+++ +|+|..+.-.- .....+..+.
T Consensus 87 ~~e~~~al~~~D~~i-----------------------------------------lVvDa~~g~~~-qt~~i~~~~~-- 122 (691)
T PRK12739 87 TIEVERSLRVLDGAV-----------------------------------------AVFDAVSGVEP-QSETVWRQAD-- 122 (691)
T ss_pred HHHHHHHHHHhCeEE-----------------------------------------EEEeCCCCCCH-HHHHHHHHHH--
Confidence 777888899999999 99998764321 1122333332
Q ss_pred CcCCCCcEEEEEEcCCCCCh---hhHHHHHHHhCC
Q psy2970 159 PQLIGIPILVLGNKRDLPNA---LDEKELIDRIMI 190 (329)
Q Consensus 159 ~~~~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~~ 190 (329)
..++|++++.||+|+.++ ...+++.+.++.
T Consensus 123 --~~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~~ 155 (691)
T PRK12739 123 --KYGVPRIVFVNKMDRIGADFFRSVEQIKDRLGA 155 (691)
T ss_pred --HcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 246899999999999865 234555555553
|
|
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.6e-09 Score=100.37 Aligned_cols=61 Identities=18% Similarity=0.206 Sum_probs=43.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCC-ceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS--QDMIP-TVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~--~~~~p-Tig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
...++|+++|.+||||||++|++++.+.. ....+ +..........++.++.++||||..+.
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~ 99 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEG 99 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCch
Confidence 45789999999999999999999987642 11111 122222223346788999999998765
|
|
| >PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) [] | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.9e-10 Score=109.50 Aligned_cols=83 Identities=28% Similarity=0.502 Sum_probs=67.8
Q ss_pred ceeeeEEEeeC-ceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhc
Q psy2970 52 TVGFNMRKITK-GNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLF 130 (329)
Q Consensus 52 Tig~~~~~i~~-~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (329)
|+|+.-..+.. +...+.++|++||..-+..|.+++.++++++
T Consensus 222 T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vi------------------------------------- 264 (389)
T PF00503_consen 222 TTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVI------------------------------------- 264 (389)
T ss_dssp -SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEE-------------------------------------
T ss_pred CCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEE-------------------------------------
Confidence 33333334555 7788999999999999999999999999999
Q ss_pred ceeEEEEECCC----------cccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 131 QLIKYMVDAAD----------TDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 131 ~~~~lV~Dvt~----------~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
||+++++ ...+.+....+.++.+.+++.++|++|+.||.|+
T Consensus 265 ----f~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 265 ----FVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp ----EEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred ----EeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 7777643 3568899999999999999999999999999997
|
G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B .... |
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.6e-09 Score=110.19 Aligned_cols=120 Identities=20% Similarity=0.161 Sum_probs=86.1
Q ss_pred EcCCCCCHHHHHHHHHcCCC--------C------------CCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHH
Q psy2970 26 VGLQCSGKTTFVNVIASGQF--------S------------QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERY 85 (329)
Q Consensus 26 lG~~gvGKSSLin~l~~~~~--------~------------~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~ 85 (329)
+|.+|+|||||+++|....- . .....|++.....+..++..+.+|||||+.++...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 59999999999999953211 0 112345555555677788999999999999887778888
Q ss_pred hhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCc
Q psy2970 86 CRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIP 165 (329)
Q Consensus 86 ~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iP 165 (329)
++.+|+++ +|+|.++....... ..+..+.. .++|
T Consensus 81 l~~aD~vl-----------------------------------------lvvd~~~~~~~~~~-~~~~~~~~----~~~p 114 (668)
T PRK12740 81 LRVLDGAV-----------------------------------------VVVCAVGGVEPQTE-TVWRQAEK----YGVP 114 (668)
T ss_pred HHHhCeEE-----------------------------------------EEEeCCCCcCHHHH-HHHHHHHH----cCCC
Confidence 99999999 99999876554333 23333322 4689
Q ss_pred EEEEEEcCCCCCh---hhHHHHHHHhCCc
Q psy2970 166 ILVLGNKRDLPNA---LDEKELIDRIMID 191 (329)
Q Consensus 166 IiLVgNK~Dl~~~---~e~~~l~~~~~~~ 191 (329)
+++|+||+|+... ...+++.+.++.+
T Consensus 115 ~iiv~NK~D~~~~~~~~~~~~l~~~l~~~ 143 (668)
T PRK12740 115 RIIFVNKMDRAGADFFRVLAQLQEKLGAP 143 (668)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHCCC
Confidence 9999999999764 2345666666653
|
|
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.9e-09 Score=96.90 Aligned_cols=61 Identities=15% Similarity=0.149 Sum_probs=44.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC--CCC-CCceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS--QDM-IPTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~--~~~-~pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
..+++|+|+|.+|||||||+|++++.... ... ..|..........++.++.++||||..+.
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~ 92 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLES 92 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcc
Confidence 45799999999999999999999987653 122 23434444344556678999999997654
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >KOG1532|consensus | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.2e-09 Score=104.04 Aligned_cols=161 Identities=16% Similarity=0.177 Sum_probs=97.6
Q ss_pred cCCCCceEEEEEcCCCCCHHHHHHHHHc---CCCCCCC-------------CCcee----eeEE----------------
Q psy2970 15 LFWKEEMELTLVGLQCSGKTTFVNVIAS---GQFSQDM-------------IPTVG----FNMR---------------- 58 (329)
Q Consensus 15 ~~~~k~lkIlllG~~gvGKSSLin~l~~---~~~~~~~-------------~pTig----~~~~---------------- 58 (329)
.+.+++.-|+++|..|+|||||+.|+.. .+..+.| ...+. ++|+
T Consensus 14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~T 93 (366)
T KOG1532|consen 14 GAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVT 93 (366)
T ss_pred ccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhh
Confidence 4567789999999999999999999964 1111111 11111 0011
Q ss_pred -------Ee---------eCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCc
Q psy2970 59 -------KI---------TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSG 122 (329)
Q Consensus 59 -------~i---------~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (329)
++ ....+...+.|||||..- +...|.+.|||.+++...|
T Consensus 94 sLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~------FtWSAsGsIIte~lass~p------------------- 148 (366)
T KOG1532|consen 94 SLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEA------FTWSASGSIITETLASSFP------------------- 148 (366)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEE------EEecCCccchHhhHhhcCC-------------------
Confidence 00 122356889999998642 4445566665544444433
Q ss_pred hhhhhhhcceeEEEEECCC---cccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhHHHHHH-------------
Q psy2970 123 PMWLSLLFQLIKYMVDAAD---TDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELID------------- 186 (329)
Q Consensus 123 ~~~~~~~~~~~~lV~Dvt~---~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~~l~~------------- 186 (329)
.++.||+|... +.+|-.-.-+-..++- ..+.|.|+|.||+|+.+..-+.+|..
T Consensus 149 --------tvv~YvvDt~rs~~p~tFMSNMlYAcSily---ktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~ 217 (366)
T KOG1532|consen 149 --------TVVVYVVDTPRSTSPTTFMSNMLYACSILY---KTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAE 217 (366)
T ss_pred --------eEEEEEecCCcCCCchhHHHHHHHHHHHHH---hccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhc
Confidence 23448899654 4445444444444444 36899999999999988622111111
Q ss_pred ----------------Hh--CCcEEEEeccchHHHHHHhhhhc
Q psy2970 187 ----------------RI--MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 187 ----------------~~--~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
++ ++..+-+|+.++.+.+.|+..+.
T Consensus 218 ~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~ 260 (366)
T KOG1532|consen 218 SSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVD 260 (366)
T ss_pred cchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHH
Confidence 11 25678899999888888887764
|
|
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.2e-09 Score=102.06 Aligned_cols=121 Identities=18% Similarity=0.348 Sum_probs=80.4
Q ss_pred hcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCC--CCceeeeEE-EeeCceEEEEEEecCCCcc-------ccchHH
Q psy2970 14 SLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDM--IPTVGFNMR-KITKGNVTIKVWDIGGQPR-------FRSMWE 83 (329)
Q Consensus 14 ~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~--~pTig~~~~-~i~~~~~~l~I~DtpG~e~-------~~~~~~ 83 (329)
.+..++.++|++.|..|+||||++|+++.++..+-. ..+....-+ ....+.-.+.+|||||.++ ++....
T Consensus 33 ~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~ 112 (296)
T COG3596 33 QLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYR 112 (296)
T ss_pred hhcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHH
Confidence 444678999999999999999999999976654221 111111111 1233446788999999765 444556
Q ss_pred HHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCC
Q psy2970 84 RYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIG 163 (329)
Q Consensus 84 ~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~ 163 (329)
.++.+.|.++ ++.|..|+. +.--...+++++.. ..+
T Consensus 113 d~l~~~DLvL-----------------------------------------~l~~~~dra-L~~d~~f~~dVi~~--~~~ 148 (296)
T COG3596 113 DYLPKLDLVL-----------------------------------------WLIKADDRA-LGTDEDFLRDVIIL--GLD 148 (296)
T ss_pred HHhhhccEEE-----------------------------------------EeccCCCcc-ccCCHHHHHHHHHh--ccC
Confidence 6777777666 888888864 22223444455433 244
Q ss_pred CcEEEEEEcCCCCCh
Q psy2970 164 IPILVLGNKRDLPNA 178 (329)
Q Consensus 164 iPIiLVgNK~Dl~~~ 178 (329)
.|++++.|++|...+
T Consensus 149 ~~~i~~VtQ~D~a~p 163 (296)
T COG3596 149 KRVLFVVTQADRAEP 163 (296)
T ss_pred ceeEEEEehhhhhcc
Confidence 789999999998643
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.7e-09 Score=99.38 Aligned_cols=75 Identities=12% Similarity=0.109 Sum_probs=45.9
Q ss_pred EEEECCCcccHHHHH-HH-HHHHHhCCcCCCCcEEEEEEcCCCCChhhHHHH----------------------------
Q psy2970 135 YMVDAADTDKLEASR-NE-LHALIEKPQLIGIPILVLGNKRDLPNALDEKEL---------------------------- 184 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~-~~-l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~~l---------------------------- 184 (329)
+++|.....+..... .+ +...... ..++|+++|+||+|+.+..+.+++
T Consensus 134 ~liD~~~~~~~~d~~~~~~l~~~~~~--~~~~~~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 211 (253)
T PRK13768 134 FLIDAVLAKTPSDFVSLLLLALSVQL--RLGLPQIPVLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLEL 211 (253)
T ss_pred EEechHHhCCHHHHHHHHHHHHHHHH--HcCCCEEEEEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHH
Confidence 999996543322221 12 2211111 247899999999999765332221
Q ss_pred ---HHHhC--CcEEEEeccchHHHHHHhhhhc
Q psy2970 185 ---IDRIM--IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 185 ---~~~~~--~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.++++ .+++++|+++....+++...+.
T Consensus 212 ~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~ 243 (253)
T PRK13768 212 LRALEETGLPVRVIPVSAKTGEGFDELYAAIQ 243 (253)
T ss_pred HHHHHHHCCCCcEEEEECCCCcCHHHHHHHHH
Confidence 12334 5789999999888888776664
|
|
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.9e-09 Score=109.84 Aligned_cols=124 Identities=21% Similarity=0.135 Sum_probs=83.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc--CCC------C------------CCCCCceeeeEEEeeCceEEEEEEecCCCccccc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS--GQF------S------------QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS 80 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~--~~~------~------------~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~ 80 (329)
.+|+++|.+++|||||+++|.. +.. . ....-|+......+..++.++.+.||||..+|..
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~~ 90 (693)
T PRK00007 11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFTI 90 (693)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHHH
Confidence 5899999999999999999963 211 0 0111233333334566778999999999988766
Q ss_pred hHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc
Q psy2970 81 MWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ 160 (329)
Q Consensus 81 ~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~ 160 (329)
.....++.+|+++ +|+|....-.-+ ....+..+.
T Consensus 91 ev~~al~~~D~~v-----------------------------------------lVvda~~g~~~q-t~~~~~~~~---- 124 (693)
T PRK00007 91 EVERSLRVLDGAV-----------------------------------------AVFDAVGGVEPQ-SETVWRQAD---- 124 (693)
T ss_pred HHHHHHHHcCEEE-----------------------------------------EEEECCCCcchh-hHHHHHHHH----
Confidence 5666778888888 999987542222 222333332
Q ss_pred CCCCcEEEEEEcCCCCChh---hHHHHHHHhCC
Q psy2970 161 LIGIPILVLGNKRDLPNAL---DEKELIDRIMI 190 (329)
Q Consensus 161 ~~~iPIiLVgNK~Dl~~~~---e~~~l~~~~~~ 190 (329)
..++|++++.||+|+.++. -.+++.++++.
T Consensus 125 ~~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~ 157 (693)
T PRK00007 125 KYKVPRIAFVNKMDRTGADFYRVVEQIKDRLGA 157 (693)
T ss_pred HcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 2468999999999998652 34555566554
|
|
| >KOG0462|consensus | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.6e-09 Score=106.22 Aligned_cols=169 Identities=20% Similarity=0.193 Sum_probs=114.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC--C---------------CCCCCceeeeEEEee---CceEEEEEEecCCCccccch
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQF--S---------------QDMIPTVGFNMRKIT---KGNVTIKVWDIGGQPRFRSM 81 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~--~---------------~~~~pTig~~~~~i~---~~~~~l~I~DtpG~e~~~~~ 81 (329)
++.++---.-|||||..+++..-- . ....-|+.-....+- ++.+.++++||||+.+|+..
T Consensus 62 NfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~E 141 (650)
T KOG0462|consen 62 NFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGE 141 (650)
T ss_pred ceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccce
Confidence 577777778899999999975211 0 111122222222232 55599999999999999988
Q ss_pred HHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcC
Q psy2970 82 WERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQL 161 (329)
Q Consensus 82 ~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~ 161 (329)
...-+..+++++ +|+|++.--.-+...+.+..+ .
T Consensus 142 VsRslaac~G~l-----------------------------------------LvVDA~qGvqAQT~anf~lAf-----e 175 (650)
T KOG0462|consen 142 VSRSLAACDGAL-----------------------------------------LVVDASQGVQAQTVANFYLAF-----E 175 (650)
T ss_pred ehehhhhcCceE-----------------------------------------EEEEcCcCchHHHHHHHHHHH-----H
Confidence 888889999999 999997643334444555444 2
Q ss_pred CCCcEEEEEEcCCCCCh--hh-HHHHHHHhC---CcEEEEeccchHHHHHHhhhh-cC-CCchhhhcCCcchhhhhhhhh
Q psy2970 162 IGIPILVLGNKRDLPNA--LD-EKELIDRIM---IDFWITLTLLIRWCESFLHHF-GS-HPNWAVKWHTLPKLLFLSLVD 233 (329)
Q Consensus 162 ~~iPIiLVgNK~Dl~~~--~e-~~~l~~~~~---~~~~etSAk~~~~~~~~l~~i-~~-~~~~~~~~~~~~~~~~~~~~~ 233 (329)
.+..+|.|.||+|++.+ ++ ..++.+-++ .+.+.+|||++-+.+++++.+ +. .|........+..++|.+-.+
T Consensus 176 ~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~~d~plr~Lifds~yD 255 (650)
T KOG0462|consen 176 AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPPPKGIRDAPLRMLIFDSEYD 255 (650)
T ss_pred cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCCCCCCCCcchHHHhhhhhhh
Confidence 46779999999999876 22 223334444 468999999977777777655 32 334445555777788888888
Q ss_pred ccc
Q psy2970 234 SYV 236 (329)
Q Consensus 234 ~~~ 236 (329)
+|.
T Consensus 256 ~y~ 258 (650)
T KOG0462|consen 256 EYR 258 (650)
T ss_pred hhc
Confidence 754
|
|
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.2e-08 Score=92.33 Aligned_cols=154 Identities=14% Similarity=0.205 Sum_probs=88.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~ 97 (329)
.....|+++|.+|+|||||++.+.+..-........|. +.-...++.++.++||||.. ..+ ....+.+|.++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVl---- 108 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI--NAM-IDIAKVADLVL---- 108 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH--HHH-HHHHHhcCEEE----
Confidence 45578999999999999999999864211111111111 11123456778999999854 222 23456778888
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCc-EEEEEEcCCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIP-ILVLGNKRDLP 176 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iP-IiLVgNK~Dl~ 176 (329)
+++|.+....... ..+.+.+.. .+.| +++|.||+|+.
T Consensus 109 -------------------------------------lviDa~~~~~~~~--~~i~~~l~~---~g~p~vi~VvnK~D~~ 146 (225)
T cd01882 109 -------------------------------------LLIDASFGFEMET--FEFLNILQV---HGFPRVMGVLTHLDLF 146 (225)
T ss_pred -------------------------------------EEEecCcCCCHHH--HHHHHHHHH---cCCCeEEEEEeccccC
Confidence 9999875432211 222223222 3567 45599999996
Q ss_pred Chh----h-HHHH----HHHh--CCcEEEEeccc-----hHHHHHHhhhhcCCCchhhhcC
Q psy2970 177 NAL----D-EKEL----IDRI--MIDFWITLTLL-----IRWCESFLHHFGSHPNWAVKWH 221 (329)
Q Consensus 177 ~~~----e-~~~l----~~~~--~~~~~etSAk~-----~~~~~~~l~~i~~~~~~~~~~~ 221 (329)
+.. + .+++ .+++ +.+++.+||++ .+-...++-.+.......+.|+
T Consensus 147 ~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~~~~~e~~~~~r~i~~~~~~~~~~r 207 (225)
T cd01882 147 KKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGRYPKTEIHNLARFISVMKFRPLNWR 207 (225)
T ss_pred CcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCCCCHHHHHHHHHHHHhCCCCCCeee
Confidence 431 1 1222 2222 25799999888 3444555555554444444443
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.4e-08 Score=103.43 Aligned_cols=150 Identities=14% Similarity=0.135 Sum_probs=94.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCC---CCC--CCCceeeeEE-----------------EeeCc-----------
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQF---SQD--MIPTVGFNMR-----------------KITKG----------- 63 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~---~~~--~~pTig~~~~-----------------~i~~~----------- 63 (329)
....++|.++|.-..|||||+++|++... ..+ ..-|+...|. .....
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 45679999999999999999999996432 111 1112211111 01000
Q ss_pred -----eEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEE
Q psy2970 64 -----NVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVD 138 (329)
Q Consensus 64 -----~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~D 138 (329)
...+.+.|+||+++|......-...+|.++ +|+|
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~al-----------------------------------------LVVd 149 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAAL-----------------------------------------LLIA 149 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEE-----------------------------------------EEEE
Confidence 236889999999887554444566778888 9999
Q ss_pred CCCcccHHHHHHHHHHHHhCCcCCC-CcEEEEEEcCCCCChhhH----HHHHHH------hCCcEEEEeccchHHHHHHh
Q psy2970 139 AADTDKLEASRNELHALIEKPQLIG-IPILVLGNKRDLPNALDE----KELIDR------IMIDFWITLTLLIRWCESFL 207 (329)
Q Consensus 139 vt~~~S~~~~~~~l~~i~~~~~~~~-iPIiLVgNK~Dl~~~~e~----~~l~~~------~~~~~~etSAk~~~~~~~~l 207 (329)
+.+........+.+. +.+. .+ .|++||.||+|+.+..+. +++.+. ...+++.+||+++.+.+.++
T Consensus 150 a~~g~~~~qT~ehl~-i~~~---lgi~~iIVvlNKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll 225 (460)
T PTZ00327 150 ANESCPQPQTSEHLA-AVEI---MKLKHIIILQNKIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVL 225 (460)
T ss_pred CCCCccchhhHHHHH-HHHH---cCCCcEEEEEecccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHH
Confidence 986311111222222 2221 22 468999999999864322 222222 24689999999988888888
Q ss_pred hhhc
Q psy2970 208 HHFG 211 (329)
Q Consensus 208 ~~i~ 211 (329)
+.+.
T Consensus 226 ~~L~ 229 (460)
T PTZ00327 226 EYIC 229 (460)
T ss_pred HHHH
Confidence 8776
|
|
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.3e-08 Score=102.67 Aligned_cols=104 Identities=16% Similarity=0.201 Sum_probs=66.6
Q ss_pred EEEEEecCCCccc-----cchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECC
Q psy2970 66 TIKVWDIGGQPRF-----RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAA 140 (329)
Q Consensus 66 ~l~I~DtpG~e~~-----~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt 140 (329)
++.+.||||...- .......+.++|.++ +|+|.+
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVL-----------------------------------------FVVDat 269 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVL-----------------------------------------AVLDYT 269 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEE-----------------------------------------EEEeCC
Confidence 3668899997542 112344678888888 999998
Q ss_pred CcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC-----hhhHHHHHHHh----CC---cEEEEeccchHHHHHHhh
Q psy2970 141 DTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN-----ALDEKELIDRI----MI---DFWITLTLLIRWCESFLH 208 (329)
Q Consensus 141 ~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~-----~~e~~~l~~~~----~~---~~~etSAk~~~~~~~~l~ 208 (329)
+..+... ....+.+ ... ..+.|+++|.||+|+.+ .+...++.+.. +. ..+.+||+.+.+.+.+++
T Consensus 270 ~~~s~~D-eeIlk~L-kk~-~K~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLd 346 (741)
T PRK09866 270 QLKSISD-EEVREAI-LAV-GQSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARH 346 (741)
T ss_pred CCCChhH-HHHHHHH-Hhc-CCCCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHH
Confidence 7533322 2222333 321 12369999999999875 23333333222 22 589999999999999988
Q ss_pred hhcCC
Q psy2970 209 HFGSH 213 (329)
Q Consensus 209 ~i~~~ 213 (329)
.+..+
T Consensus 347 eI~~~ 351 (741)
T PRK09866 347 ELANN 351 (741)
T ss_pred HHHhC
Confidence 87654
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-08 Score=102.58 Aligned_cols=169 Identities=21% Similarity=0.189 Sum_probs=111.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC-----------C------CCCCCCce-----eeeEEEeeCceEEEEEEecCCCcccc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ-----------F------SQDMIPTV-----GFNMRKITKGNVTIKVWDIGGQPRFR 79 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~-----------~------~~~~~pTi-----g~~~~~i~~~~~~l~I~DtpG~e~~~ 79 (329)
+..++-.-.-|||||..|+.... + .....-|+ ...|..-+++.+.+++.||||+-+|.
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs 90 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 90 (603)
T ss_pred ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence 34555666789999999996411 0 11112222 22333335678999999999999987
Q ss_pred chHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC
Q psy2970 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP 159 (329)
Q Consensus 80 ~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~ 159 (329)
-.....+..+.+.+ +|+|++.--.-+.+.+.+..+
T Consensus 91 YEVSRSLAACEGal-----------------------------------------LvVDAsQGveAQTlAN~YlAl---- 125 (603)
T COG0481 91 YEVSRSLAACEGAL-----------------------------------------LVVDASQGVEAQTLANVYLAL---- 125 (603)
T ss_pred EEehhhHhhCCCcE-----------------------------------------EEEECccchHHHHHHHHHHHH----
Confidence 66666677778888 999998643334555555555
Q ss_pred cCCCCcEEEEEEcCCCCCh---hhHHHHHHHhCCc---EEEEeccchHHHHHHhhhhc-CCC-chhhhcCCcchhhhhhh
Q psy2970 160 QLIGIPILVLGNKRDLPNA---LDEKELIDRIMID---FWITLTLLIRWCESFLHHFG-SHP-NWAVKWHTLPKLLFLSL 231 (329)
Q Consensus 160 ~~~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~~~---~~etSAk~~~~~~~~l~~i~-~~~-~~~~~~~~~~~~~~~~~ 231 (329)
..+.-|+-|.||+||+.+ .-.+++.+-+|++ -+.+|||++.+.+++++.+- ..| ...-....+..++|.+.
T Consensus 126 -e~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~~~~pLkALifDS~ 204 (603)
T COG0481 126 -ENNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGDPDAPLKALIFDSW 204 (603)
T ss_pred -HcCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCCCCCCCcceEEEEecc
Confidence 245668889999999986 3356777778875 78999999777777776652 211 11222234555667777
Q ss_pred hhccc
Q psy2970 232 VDSYV 236 (329)
Q Consensus 232 ~~~~~ 236 (329)
+++|+
T Consensus 205 yD~Y~ 209 (603)
T COG0481 205 YDNYL 209 (603)
T ss_pred ccccc
Confidence 77654
|
|
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.4e-08 Score=98.57 Aligned_cols=76 Identities=21% Similarity=0.306 Sum_probs=49.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCC-CCC-CceeeeEEEeeCc-----------------eEEEEEEecCCCccc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQ-DMI-PTVGFNMRKITKG-----------------NVTIKVWDIGGQPRF 78 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~-~~~-pTig~~~~~i~~~-----------------~~~l~I~DtpG~e~~ 78 (329)
...++|.++|.||||||||+|++++.+... .++ .|+..+...+... ..++.+.||||...-
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 567899999999999999999998876532 222 2333333322111 335899999996532
Q ss_pred c----c---hHHHHhhccceeE
Q psy2970 79 R----S---MWERYCRGVNAIV 93 (329)
Q Consensus 79 ~----~---~~~~~~~~ad~iI 93 (329)
. . ..-..++++|+++
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il 120 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIY 120 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEE
Confidence 1 1 2233467899999
|
|
| >KOG3905|consensus | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.8e-08 Score=95.03 Aligned_cols=154 Identities=15% Similarity=0.173 Sum_probs=101.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEe----eCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI----TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i----~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
..-+|+++|+.++|||||+.++.+.+ ..+.....+..|..+ .++..++.+|-+.|+.....+....+....
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e-~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats---- 125 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSE-TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATS---- 125 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhccc-ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccC----
Confidence 34589999999999999999999877 334445555555443 234467889999997766666554433221
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccH-HHHHHHHH---HHHhCC-----------
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKL-EASRNELH---ALIEKP----------- 159 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~-~~~~~~l~---~i~~~~----------- 159 (329)
+--.+++++.|+++|..+ +.+..|.. +-+++.
T Consensus 126 ---------------------------------~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~r 172 (473)
T KOG3905|consen 126 ---------------------------------LAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGR 172 (473)
T ss_pred ---------------------------------ccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 111223389999998443 33333322 111110
Q ss_pred ----------------------------------------------cCCCCcEEEEEEcCCCCCh---------------
Q psy2970 160 ----------------------------------------------QLIGIPILVLGNKRDLPNA--------------- 178 (329)
Q Consensus 160 ----------------------------------------------~~~~iPIiLVgNK~Dl~~~--------------- 178 (329)
...++|++||++|+|....
T Consensus 173 qk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfi 252 (473)
T KOG3905|consen 173 QKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFI 252 (473)
T ss_pred HHHHHHHHHhcCccccCCCCcccccccccCccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHH
Confidence 0125899999999998431
Q ss_pred -hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 179 -LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 179 -~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
..+..||-++|..++.||+|...+++.+...+
T Consensus 253 q~~lRkFCLr~GaaLiyTSvKE~KNidllyKYi 285 (473)
T KOG3905|consen 253 QSHLRKFCLRYGAALIYTSVKETKNIDLLYKYI 285 (473)
T ss_pred HHHHHHHHHHcCceeEEeecccccchHHHHHHH
Confidence 23677888999999999999977777766554
|
|
| >KOG0085|consensus | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.1e-10 Score=102.77 Aligned_cols=98 Identities=22% Similarity=0.445 Sum_probs=75.4
Q ss_pred CCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhh
Q psy2970 50 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLL 129 (329)
Q Consensus 50 ~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (329)
.||+|+.-..++..++.+.+.|++||..-+..|.++++++..+++-- +.+-|+.
T Consensus 184 vPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLv------------aLSEYDQ-------------- 237 (359)
T KOG0085|consen 184 VPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLV------------ALSEYDQ-------------- 237 (359)
T ss_pred cCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHH------------HHHHHHH--------------
Confidence 46666666667778888999999999988999999999988887211 1111211
Q ss_pred cceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh
Q psy2970 130 FQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA 178 (329)
Q Consensus 130 ~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~ 178 (329)
..+...+.+.+++.+.++.-++..+|+.+.++|+++||.|+-++
T Consensus 238 -----vL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkDlLEe 281 (359)
T KOG0085|consen 238 -----VLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEE 281 (359)
T ss_pred -----HHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhhhhhh
Confidence 22334567789999999999999999999999999999998653
|
|
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.6e-08 Score=103.10 Aligned_cols=147 Identities=20% Similarity=0.192 Sum_probs=100.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCC----CCCceeeeEEEeeC-ceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQD----MIPTVGFNMRKITK-GNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~----~~pTig~~~~~i~~-~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
+..=|+++|.-.-|||||+..+-+...... ..+.+|--....+. +.-.+.+.||||++.|..++..=..-+|.++
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 345689999999999999999987776432 22333332222221 3457899999999999999877777777777
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|+|+.|--. ..-.+.+++....++|++|..||+
T Consensus 84 -----------------------------------------LVVa~dDGv~-----pQTiEAI~hak~a~vP~iVAiNKi 117 (509)
T COG0532 84 -----------------------------------------LVVAADDGVM-----PQTIEAINHAKAAGVPIVVAINKI 117 (509)
T ss_pred -----------------------------------------EEEEccCCcc-----hhHHHHHHHHHHCCCCEEEEEecc
Confidence 9999987311 111122222234789999999999
Q ss_pred CCCChh--hHHH-------HHHHhC--CcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNAL--DEKE-------LIDRIM--IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~~--e~~~-------l~~~~~--~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|.++.. .... ..++++ ..++++||+++.+..+++..+.
T Consensus 118 Dk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~il 166 (509)
T COG0532 118 DKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELIL 166 (509)
T ss_pred cCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHH
Confidence 998651 1111 123333 5799999999888888887764
|
|
| >KOG1145|consensus | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.9e-08 Score=99.98 Aligned_cols=147 Identities=19% Similarity=0.229 Sum_probs=105.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCC----CCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhcccee
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFS----QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAI 92 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~----~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~i 92 (329)
-++.--|.+.|--.-|||||+..|-+..+. ....+.+|--...++ ++-.+.|.||||+..|..|+..-.+-+|.+
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIv 228 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIV 228 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEE
Confidence 345567999999999999999999877664 122244454444455 457889999999999999988777888888
Q ss_pred EeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 93 VWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+ +|+.+.|- ++..-.+.+......++|++|..||
T Consensus 229 V-----------------------------------------LVVAadDG-----VmpQT~EaIkhAk~A~VpiVvAinK 262 (683)
T KOG1145|consen 229 V-----------------------------------------LVVAADDG-----VMPQTLEAIKHAKSANVPIVVAINK 262 (683)
T ss_pred E-----------------------------------------EEEEccCC-----ccHhHHHHHHHHHhcCCCEEEEEec
Confidence 8 99988772 2233333344445578999999999
Q ss_pred CCCCChhh--H-HH------HHHHhC--CcEEEEeccchHHHHHHhhhh
Q psy2970 173 RDLPNALD--E-KE------LIDRIM--IDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 173 ~Dl~~~~e--~-~~------l~~~~~--~~~~etSAk~~~~~~~~l~~i 210 (329)
||.+++.- . ++ ..+++| ++.+++||+++.+.+.+.+.+
T Consensus 263 iDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eai 311 (683)
T KOG1145|consen 263 IDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAI 311 (683)
T ss_pred cCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHH
Confidence 99987621 1 11 123343 689999999988777776655
|
|
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.3e-07 Score=90.84 Aligned_cols=73 Identities=26% Similarity=0.345 Sum_probs=47.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-CCC-CCceeeeEEEe--eCc---------------eEEEEEEecCCCcccc--
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS-QDM-IPTVGFNMRKI--TKG---------------NVTIKVWDIGGQPRFR-- 79 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~-~~~-~pTig~~~~~i--~~~---------------~~~l~I~DtpG~e~~~-- 79 (329)
++|.++|.||||||||+|++++.+.. ..+ ..|+......+ ... ..++.+.|+||...-.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 78999999999999999999987743 122 23334333221 111 1258999999965321
Q ss_pred --ch---HHHHhhccceeE
Q psy2970 80 --SM---WERYCRGVNAIV 93 (329)
Q Consensus 80 --~~---~~~~~~~ad~iI 93 (329)
.+ .-..++++|+++
T Consensus 83 g~glg~~fL~~i~~aD~li 101 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIV 101 (364)
T ss_pred HHHHHHHHHHHHHhCCEEE
Confidence 11 223467899998
|
|
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.7e-07 Score=85.56 Aligned_cols=146 Identities=15% Similarity=0.048 Sum_probs=78.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCC----CCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDM----IPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~----~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
++|+|+|..|+||||++|.+++.+..... .-|..........++..+.++||||.-+-....+...
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~---------- 70 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEII---------- 70 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHH----------
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHH----------
Confidence 58999999999999999999987754221 2243444444566778899999999643322111000
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc-cHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD-KLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~-S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+.+.++..... .+.+++++|+.++... .-.....++.++...... .-++||.+..|.
T Consensus 71 ------~~i~~~l~~~~--------------~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~--k~~ivvfT~~d~ 128 (212)
T PF04548_consen 71 ------REIKRCLSLCS--------------PGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIW--KHTIVVFTHADE 128 (212)
T ss_dssp ------HHHHHHHHHTT--------------T-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGG--GGEEEEEEEGGG
T ss_pred ------HHHHHHHHhcc--------------CCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHH--hHhhHHhhhccc
Confidence 11111111111 1223444999988332 123334455555443211 237777887775
Q ss_pred CChh------------hHHHHHHHhCCcEEEEecc
Q psy2970 176 PNAL------------DEKELIDRIMIDFWITLTL 198 (329)
Q Consensus 176 ~~~~------------e~~~l~~~~~~~~~etSAk 198 (329)
.... .++++.++.+-.|.....+
T Consensus 129 ~~~~~~~~~l~~~~~~~l~~li~~c~~R~~~f~n~ 163 (212)
T PF04548_consen 129 LEDDSLEDYLKKESNEALQELIEKCGGRYHVFNNK 163 (212)
T ss_dssp GTTTTHHHHHHHHHHHHHHHHHHHTTTCEEECCTT
T ss_pred cccccHHHHHhccCchhHhHHhhhcCCEEEEEecc
Confidence 4431 2455666777777777666
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.5e-08 Score=94.68 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=28.6
Q ss_pred CCCcEEEEEEcCCCCChh---------h---------------HHHHHHHh---C-C-cEEEEeccchHHHHHHhhhhc
Q psy2970 162 IGIPILVLGNKRDLPNAL---------D---------------EKELIDRI---M-I-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 162 ~~iPIiLVgNK~Dl~~~~---------e---------------~~~l~~~~---~-~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
.+.|.+.|.||+|+.++. + .+++++-+ + . .++..|+++....+.++..+.
T Consensus 155 ~~lP~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id 233 (238)
T PF03029_consen 155 LELPHVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAID 233 (238)
T ss_dssp HTSEEEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHH
T ss_pred CCCCEEEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHH
Confidence 478999999999998721 0 11222222 2 3 688889998888888776654
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.2e-08 Score=89.58 Aligned_cols=92 Identities=15% Similarity=0.117 Sum_probs=72.6
Q ss_pred ccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc-cHHHHHHHHHH
Q psy2970 76 PRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD-KLEASRNELHA 154 (329)
Q Consensus 76 e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~-S~~~~~~~l~~ 154 (329)
++++.+.+.+++++|.++ +|+|++++. +++.+..|+..
T Consensus 24 eR~~~L~r~~~~n~D~vi-----------------------------------------iV~d~~~p~~s~~~l~r~l~~ 62 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIV-----------------------------------------IVSSAVLPELSLNQLDRFLVV 62 (245)
T ss_pred cccceEECcccccCCEEE-----------------------------------------EEEECCCCCCCHHHHHHHHHH
Confidence 677777788999999999 999999887 89999888875
Q ss_pred HHhCCcCCCCcEEEEEEcCCCCChhh----HHHHHHHhCCcEEEEeccchHHHHHHhhhhcC
Q psy2970 155 LIEKPQLIGIPILVLGNKRDLPNALD----EKELIDRIMIDFWITLTLLIRWCESFLHHFGS 212 (329)
Q Consensus 155 i~~~~~~~~iPIiLVgNK~Dl~~~~e----~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~~ 212 (329)
+.. .++|+++|+||+||.+..+ ..+..++.+++++++||+++.+.+++++.+..
T Consensus 63 ~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 63 AEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HHH----CCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHhhhcC
Confidence 532 5799999999999975422 12233457889999999998888888877653
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.2e-07 Score=91.39 Aligned_cols=161 Identities=15% Similarity=0.126 Sum_probs=86.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC----CCC-----------------CCCCCceeeeE---EE-----eeCceEEEE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG----QFS-----------------QDMIPTVGFNM---RK-----ITKGNVTIK 68 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~----~~~-----------------~~~~pTig~~~---~~-----i~~~~~~l~ 68 (329)
..++.|.++|+.++|||||+|+|++. +.. ...+.|++..+ .. .++-..++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 46799999999999999999999886 322 12224555544 22 245567899
Q ss_pred EEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCC------CchhhhhhhcceeEEEE-ECC-
Q psy2970 69 VWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGV------SGPMWLSLLFQLIKYMV-DAA- 140 (329)
Q Consensus 69 I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~lV~-Dvt- 140 (329)
+.||+|...-..+- ...+++ -|++..=|-.-.+++ .-+..+.--.++.++|. |.+
T Consensus 95 lIDcvG~~v~GalG---------------~~r~~k--~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi 157 (492)
T TIGR02836 95 LVDCVGYTVKGALG---------------YMEEDK--PRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTI 157 (492)
T ss_pred EEECCCcccCCCcc---------------ceeccc--cccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCc
Confidence 99999954321110 000000 000000000000000 00011111112223776 653
Q ss_pred -C--cccH-HHHHHHHHHHHhCCcCCCCcEEEEEEcCC-CCCh-h-hHHHHHHHhCCcEEEEeccc
Q psy2970 141 -D--TDKL-EASRNELHALIEKPQLIGIPILVLGNKRD-LPNA-L-DEKELIDRIMIDFWITLTLL 199 (329)
Q Consensus 141 -~--~~S~-~~~~~~l~~i~~~~~~~~iPIiLVgNK~D-l~~~-~-e~~~l~~~~~~~~~etSAk~ 199 (329)
+ ++.+ +.-..++.++.+ .++|+++|.||.| ...+ . -.+++.++++++++.+|...
T Consensus 158 ~dI~Re~y~~aEe~~i~eLk~----~~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~c~~ 219 (492)
T TIGR02836 158 TDIPREDYVEAEERVIEELKE----LNKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMDVES 219 (492)
T ss_pred cccccccchHHHHHHHHHHHh----cCCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEEHHH
Confidence 1 1222 233344555533 5899999999999 4333 2 24577888999988888876
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.4e-07 Score=103.96 Aligned_cols=132 Identities=18% Similarity=0.168 Sum_probs=85.4
Q ss_pred CCHHHHHHHHHcCCCCCCC----CCceeeeEEEeeC-c----------eE-----EEEEEecCCCccccchHHHHhhccc
Q psy2970 31 SGKTTFVNVIASGQFSQDM----IPTVGFNMRKITK-G----------NV-----TIKVWDIGGQPRFRSMWERYCRGVN 90 (329)
Q Consensus 31 vGKSSLin~l~~~~~~~~~----~pTig~~~~~i~~-~----------~~-----~l~I~DtpG~e~~~~~~~~~~~~ad 90 (329)
++||||+.++.+....... .+.+|......+. + .. .+.+|||||++.|..+.......+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 4699999999887664221 2333332222211 0 11 2799999999999888777788899
Q ss_pred eeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCC---cccHHHHHHHHHHHHhCCcCCCCcEE
Q psy2970 91 AIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAAD---TDKLEASRNELHALIEKPQLIGIPIL 167 (329)
Q Consensus 91 ~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~---~~S~~~~~~~l~~i~~~~~~~~iPIi 167 (329)
+++ +|+|+++ +.+++.+. ++.. .++|++
T Consensus 552 ivl-----------------------------------------LVVDa~~Gi~~qT~e~I~-----~lk~---~~iPiI 582 (1049)
T PRK14845 552 LAV-----------------------------------------LVVDINEGFKPQTIEAIN-----ILRQ---YKTPFV 582 (1049)
T ss_pred EEE-----------------------------------------EEEECcccCCHhHHHHHH-----HHHH---cCCCEE
Confidence 999 9999986 33433332 2222 368999
Q ss_pred EEEEcCCCCCh-h-----------------hHHHHH----------H-------------Hh--CCcEEEEeccchHHHH
Q psy2970 168 VLGNKRDLPNA-L-----------------DEKELI----------D-------------RI--MIDFWITLTLLIRWCE 204 (329)
Q Consensus 168 LVgNK~Dl~~~-~-----------------e~~~l~----------~-------------~~--~~~~~etSAk~~~~~~ 204 (329)
+|+||+|+... . ..+++. . ++ .++++++||+++.+.+
T Consensus 583 VViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId 662 (1049)
T PRK14845 583 VAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIP 662 (1049)
T ss_pred EEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHH
Confidence 99999999531 0 011111 1 11 2579999999988888
Q ss_pred HHhhhhc
Q psy2970 205 SFLHHFG 211 (329)
Q Consensus 205 ~~l~~i~ 211 (329)
.++..+.
T Consensus 663 ~Ll~~l~ 669 (1049)
T PRK14845 663 ELLMMVA 669 (1049)
T ss_pred HHHHHHH
Confidence 8776553
|
|
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.6e-07 Score=94.33 Aligned_cols=62 Identities=19% Similarity=0.423 Sum_probs=44.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--Eee----CceEEEEEEecCCCccccchHH
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--KIT----KGNVTIKVWDIGGQPRFRSMWE 83 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~i~----~~~~~l~I~DtpG~e~~~~~~~ 83 (329)
.+-.|+|+|+.++|||||+.+|.+.+ .+.++.+..|. .+. .+..++.+|-+.|...+..+.+
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk 91 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLK 91 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhc
Confidence 45689999999999999999997644 34456665554 331 2235789999988766666554
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.3e-07 Score=86.96 Aligned_cols=140 Identities=14% Similarity=0.211 Sum_probs=73.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCC----------CCCceeeeEEE--e--eCceEEEEEEecCCCccccc---hH
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQD----------MIPTVGFNMRK--I--TKGNVTIKVWDIGGQPRFRS---MW 82 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~----------~~pTig~~~~~--i--~~~~~~l~I~DtpG~e~~~~---~~ 82 (329)
.++|+|+|.+|+|||||+|.|++...... ..++....... + ++..+.+.++||||.-+... .|
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 58999999999999999999998655322 11233333322 2 34456889999999432211 11
Q ss_pred ---HHHhhc-cceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC
Q psy2970 83 ---ERYCRG-VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK 158 (329)
Q Consensus 83 ---~~~~~~-ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~ 158 (329)
..|+.+ -+..+ +... .+..+...-...+|.+|.++.+...--+.-...++++
T Consensus 84 ~~I~~yI~~qf~~~l--------~eE~-------------~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~L--- 139 (281)
T PF00735_consen 84 EPIVDYIESQFDSYL--------EEES-------------KINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRL--- 139 (281)
T ss_dssp HHHHHHHHHHHHHHH--------HHHT-------------SSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHH--------HHhh-------------cccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHh---
Confidence 111111 00001 0000 0011223344568888999987542212233455555
Q ss_pred CcCCCCcEEEEEEcCCCCChhhHHHHH
Q psy2970 159 PQLIGIPILVLGNKRDLPNALDEKELI 185 (329)
Q Consensus 159 ~~~~~iPIiLVgNK~Dl~~~~e~~~l~ 185 (329)
...+++|-|..|.|.-...|.+.+.
T Consensus 140 --s~~vNvIPvIaKaD~lt~~el~~~k 164 (281)
T PF00735_consen 140 --SKRVNVIPVIAKADTLTPEELQAFK 164 (281)
T ss_dssp --TTTSEEEEEESTGGGS-HHHHHHHH
T ss_pred --cccccEEeEEecccccCHHHHHHHH
Confidence 2457889999999998876655443
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=98.61 E-value=9.6e-08 Score=86.57 Aligned_cols=74 Identities=14% Similarity=0.096 Sum_probs=47.2
Q ss_pred hcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh--h---hHHHHHHHhC--CcEEEEeccchH
Q psy2970 129 LFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--L---DEKELIDRIM--IDFWITLTLLIR 201 (329)
Q Consensus 129 ~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~--~---e~~~l~~~~~--~~~~etSAk~~~ 201 (329)
..+..+.|+|+.+.+... .. .... .+.|.++++||+|+.+. . +..+..++++ .+++++||+++.
T Consensus 123 ~~~~~i~Vvd~~~~d~~~--~~-~~~~------~~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~ 193 (207)
T TIGR00073 123 GEHMRVVLLSVTEGDDKP--LK-YPGM------FKEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGE 193 (207)
T ss_pred ccCeEEEEEecCcccchh--hh-hHhH------HhhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 344455788987654211 11 1111 34578999999999753 1 2333334444 789999999988
Q ss_pred HHHHHhhhhc
Q psy2970 202 WCESFLHHFG 211 (329)
Q Consensus 202 ~~~~~l~~i~ 211 (329)
+.+++++.+.
T Consensus 194 gv~~l~~~i~ 203 (207)
T TIGR00073 194 GLDEWLEFLE 203 (207)
T ss_pred CHHHHHHHHH
Confidence 8888887664
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >KOG3886|consensus | Back alignment and domain information |
|---|
Probab=98.61 E-value=8.4e-08 Score=89.59 Aligned_cols=155 Identities=21% Similarity=0.330 Sum_probs=100.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCC---CCCCCceeeeEEEee-CceEEEEEEecCCCccc-----cchHHHHhhccc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFS---QDMIPTVGFNMRKIT-KGNVTIKVWDIGGQPRF-----RSMWERYCRGVN 90 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~---~~~~pTig~~~~~i~-~~~~~l~I~DtpG~e~~-----~~~~~~~~~~ad 90 (329)
.-||++.|.+|+|||++=-.++.+... ....+|+++....+. -+++.+.+||.+||+.+ ....+..+++++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~ 83 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ 83 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence 358999999999999977666654422 334566666555553 34578999999999854 224456677888
Q ss_pred eeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCccc---HHHHHHHHHHHHhCCcCCCCcEE
Q psy2970 91 AIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDK---LEASRNELHALIEKPQLIGIPIL 167 (329)
Q Consensus 91 ~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S---~~~~~~~l~~i~~~~~~~~iPIi 167 (329)
+++ +|||++..+- +.....-++.+++. .+...+.
T Consensus 84 vli-----------------------------------------~vFDves~e~~~D~~~yqk~Le~ll~~--SP~AkiF 120 (295)
T KOG3886|consen 84 VLI-----------------------------------------YVFDVESREMEKDFHYYQKCLEALLQN--SPEAKIF 120 (295)
T ss_pred eee-----------------------------------------eeeeccchhhhhhHHHHHHHHHHHHhc--CCcceEE
Confidence 888 9999987542 23333334444443 4667788
Q ss_pred EEEEcCCCCChh-----------hHHHHHHHhCCcEEEEeccchH----HHHHHhhhhcCCCchh
Q psy2970 168 VLGNKRDLPNAL-----------DEKELIDRIMIDFWITLTLLIR----WCESFLHHFGSHPNWA 217 (329)
Q Consensus 168 LVgNK~Dl~~~~-----------e~~~l~~~~~~~~~etSAk~~~----~~~~~l~~i~~~~~~~ 217 (329)
+...|.|+...+ ....+...+++.++.||..+.. |...+.+.+.....|.
T Consensus 121 ~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~TsiwDetl~KAWS~iv~~lipn~~~~e 185 (295)
T KOG3886|consen 121 CLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSIWDETLYKAWSSIVYNLIPNVSALE 185 (295)
T ss_pred EEEeechhcccchHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhCCChHHHH
Confidence 999999997642 1333444556788999988855 4444445444333333
|
|
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.6e-07 Score=78.69 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=20.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASGQF 45 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~~~ 45 (329)
|+++|..++|||||+|+|++.+.
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~i 23 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPI 23 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-
T ss_pred CEEEcCCCCCHHHHHHHHHhccc
Confidence 78999999999999999998774
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.9e-07 Score=91.84 Aligned_cols=144 Identities=21% Similarity=0.235 Sum_probs=93.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcC--CCC-------------------------------CCCCCceeeeEEEeeCc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASG--QFS-------------------------------QDMIPTVGFNMRKITKG 63 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~--~~~-------------------------------~~~~pTig~~~~~i~~~ 63 (329)
.+..++++++|...+|||||+-+|+-+ .+. ....-|+.....++..+
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 467899999999999999999998531 110 11223444555567778
Q ss_pred eEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc
Q psy2970 64 NVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD 143 (329)
Q Consensus 64 ~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~ 143 (329)
.+.+.|.|+||+.+|-...-.-...||+.| +|+|+.+.+
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aV-----------------------------------------LVV~a~~~e 122 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAV-----------------------------------------LVVDARDGE 122 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEE-----------------------------------------EEEECCCCc
Confidence 889999999997776443333455677777 999998753
Q ss_pred cHHH------HHHHHHHHHhCCcCCCC-cEEEEEEcCCCCCh---------hhHHHHHHHhC-----CcEEEEeccchHH
Q psy2970 144 KLEA------SRNELHALIEKPQLIGI-PILVLGNKRDLPNA---------LDEKELIDRIM-----IDFWITLTLLIRW 202 (329)
Q Consensus 144 S~~~------~~~~l~~i~~~~~~~~i-PIiLVgNK~Dl~~~---------~e~~~l~~~~~-----~~~~etSAk~~~~ 202 (329)
|+. ......-+... .++ -++|+.||.|+.+= .+...+.+.+| ++|+.+|+..+.+
T Consensus 123 -fE~g~~~~gQtrEH~~La~t---lGi~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~N 198 (428)
T COG5256 123 -FEAGFGVGGQTREHAFLART---LGIKQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDN 198 (428)
T ss_pred -cccccccCCchhHHHHHHHh---cCCceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCc
Confidence 111 11111111111 223 36788999999852 23444666665 4699999999655
Q ss_pred HHH
Q psy2970 203 CES 205 (329)
Q Consensus 203 ~~~ 205 (329)
..+
T Consensus 199 l~~ 201 (428)
T COG5256 199 LTK 201 (428)
T ss_pred ccc
Confidence 444
|
|
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.4e-07 Score=100.63 Aligned_cols=112 Identities=17% Similarity=0.119 Sum_probs=76.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCC--CC---------C-------CCCceeeeEEEe----------------eCce
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQF--SQ---------D-------MIPTVGFNMRKI----------------TKGN 64 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~--~~---------~-------~~pTig~~~~~i----------------~~~~ 64 (329)
+--+|+++|..++|||||+.+|+...- .. + ..-|+......+ +.++
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE 97 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence 345899999999999999999974321 00 0 011111111111 2236
Q ss_pred EEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCccc
Q psy2970 65 VTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDK 144 (329)
Q Consensus 65 ~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S 144 (329)
..+.++||||+.+|.......++.+|+.+ +|+|+.+.-.
T Consensus 98 ~~inliDtPGh~dF~~e~~~al~~~D~ai-----------------------------------------lVvda~~Gv~ 136 (843)
T PLN00116 98 YLINLIDSPGHVDFSSEVTAALRITDGAL-----------------------------------------VVVDCIEGVC 136 (843)
T ss_pred eEEEEECCCCHHHHHHHHHHHHhhcCEEE-----------------------------------------EEEECCCCCc
Confidence 78899999999999877777889999999 9999876422
Q ss_pred HHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 145 LEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 145 ~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
.. ....++.+. ..++|++++.||+|..
T Consensus 137 ~~-t~~~~~~~~----~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 137 VQ-TETVLRQAL----GERIRPVLTVNKMDRC 163 (843)
T ss_pred cc-HHHHHHHHH----HCCCCEEEEEECCccc
Confidence 22 223334443 2578999999999998
|
|
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1e-07 Score=103.47 Aligned_cols=112 Identities=17% Similarity=0.135 Sum_probs=75.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCC--CC-CC---------------CCceeeeEEE--ee--------CceEEEEEE
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQF--SQ-DM---------------IPTVGFNMRK--IT--------KGNVTIKVW 70 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~--~~-~~---------------~pTig~~~~~--i~--------~~~~~l~I~ 70 (329)
+--+|+++|..++|||||+++|+...- .. .. .-|+...... .+ .++..+.+.
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 335999999999999999999975211 10 00 0111110001 11 236789999
Q ss_pred ecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHH
Q psy2970 71 DIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRN 150 (329)
Q Consensus 71 DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~ 150 (329)
||||..+|.......++.+|+++ +|+|..+.-.- ....
T Consensus 98 DtPG~~~f~~~~~~al~~~D~ai-----------------------------------------lVvda~~g~~~-~t~~ 135 (836)
T PTZ00416 98 DSPGHVDFSSEVTAALRVTDGAL-----------------------------------------VVVDCVEGVCV-QTET 135 (836)
T ss_pred cCCCHHhHHHHHHHHHhcCCeEE-----------------------------------------EEEECCCCcCc-cHHH
Confidence 99999988777777889999999 99998763221 2223
Q ss_pred HHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 151 ELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 151 ~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
.++.+.+ .++|++++.||+|+.
T Consensus 136 ~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 136 VLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred HHHHHHH----cCCCEEEEEEChhhh
Confidence 3444433 468999999999997
|
|
| >KOG1707|consensus | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.9e-07 Score=92.64 Aligned_cols=145 Identities=14% Similarity=0.175 Sum_probs=97.2
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeE----EEeeCceEEEEEEecCCCccccchHHH
Q psy2970 9 LDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNM----RKITKGNVTIKVWDIGGQPRFRSMWER 84 (329)
Q Consensus 9 ~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~----~~i~~~~~~l~I~DtpG~e~~~~~~~~ 84 (329)
+|.-+.+..++-+++.++|+.++|||.+++++.++.+...+..+....+ ..+.+..-.+.+-|.+-. ....+...
T Consensus 414 ~d~~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~k 492 (625)
T KOG1707|consen 414 LDRKKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSK 492 (625)
T ss_pred hhhccccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCc
Confidence 3433344456678999999999999999999999887655544444322 223344444555555533 11111111
Q ss_pred HhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCC
Q psy2970 85 YCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGI 164 (329)
Q Consensus 85 ~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~i 164 (329)
. ..+|.+. ++||.+++.+|+.....+..-.. ..++
T Consensus 493 e-~~cDv~~-----------------------------------------~~YDsS~p~sf~~~a~v~~~~~~---~~~~ 527 (625)
T KOG1707|consen 493 E-AACDVAC-----------------------------------------LVYDSSNPRSFEYLAEVYNKYFD---LYKI 527 (625)
T ss_pred c-ceeeeEE-----------------------------------------EecccCCchHHHHHHHHHHHhhh---ccCC
Confidence 1 4455555 99999999999998887665533 2789
Q ss_pred cEEEEEEcCCCCCh-----hhHHHHHHHhCCc-EEEEeccc
Q psy2970 165 PILVLGNKRDLPNA-----LDEKELIDRIMID-FWITLTLL 199 (329)
Q Consensus 165 PIiLVgNK~Dl~~~-----~e~~~l~~~~~~~-~~etSAk~ 199 (329)
|+++|+.|+|+.+. .+..+++++++++ -.-.|.+.
T Consensus 528 Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~ 568 (625)
T KOG1707|consen 528 PCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKT 568 (625)
T ss_pred ceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCC
Confidence 99999999999875 3468999999985 45555553
|
|
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.6e-07 Score=94.97 Aligned_cols=113 Identities=19% Similarity=0.177 Sum_probs=74.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCC--CC---------CC-------CCceeeeEE----EeeCceEEEEEEecCCCc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQF--SQ---------DM-------IPTVGFNMR----KITKGNVTIKVWDIGGQP 76 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~--~~---------~~-------~pTig~~~~----~i~~~~~~l~I~DtpG~e 76 (329)
+--+|+++|..++|||||+.+|+...- .. ++ .-|+..... ..+.++..+.+.||||..
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 334799999999999999999974211 10 00 011111111 123457889999999999
Q ss_pred cccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHH
Q psy2970 77 RFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALI 156 (329)
Q Consensus 77 ~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~ 156 (329)
+|.......++.+|+++ +|+|....-. ......+....
T Consensus 99 df~~~~~~~l~~~D~av-----------------------------------------lVvda~~g~~-~~t~~~~~~~~ 136 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAI-----------------------------------------VVVDAVEGVM-PQTETVLRQAL 136 (731)
T ss_pred ChHHHHHHHHHhcCEEE-----------------------------------------EEEECCCCCC-ccHHHHHHHHH
Confidence 98777788889999999 9999875422 12223333332
Q ss_pred hCCcCCCCcEEEEEEcCCCCC
Q psy2970 157 EKPQLIGIPILVLGNKRDLPN 177 (329)
Q Consensus 157 ~~~~~~~iPIiLVgNK~Dl~~ 177 (329)
+ .+.|.+++.||+|...
T Consensus 137 ~----~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 137 R----ERVKPVLFINKVDRLI 153 (731)
T ss_pred H----cCCCeEEEEECchhhc
Confidence 2 2467899999999863
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=7.6e-07 Score=87.29 Aligned_cols=83 Identities=13% Similarity=0.081 Sum_probs=48.1
Q ss_pred hhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhh----HHHHHHHhC----------CcE
Q psy2970 127 SLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD----EKELIDRIM----------IDF 192 (329)
Q Consensus 127 ~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e----~~~l~~~~~----------~~~ 192 (329)
....|+++++.+....+.+..... .+++. .-++|.||+|+.+... ..++.+.+. .++
T Consensus 167 ~~~aD~vlvv~~p~~gd~iq~~k~---gi~E~------aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pV 237 (332)
T PRK09435 167 AGMVDFFLLLQLPGAGDELQGIKK---GIMEL------ADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPV 237 (332)
T ss_pred HHhCCEEEEEecCCchHHHHHHHh---hhhhh------hheEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCE
Confidence 334444448866444333333322 23222 2379999999876422 223333332 579
Q ss_pred EEEeccchHHHHHHhhhhcCCCchhh
Q psy2970 193 WITLTLLIRWCESFLHHFGSHPNWAV 218 (329)
Q Consensus 193 ~etSAk~~~~~~~~l~~i~~~~~~~~ 218 (329)
+.+||+++.+.+++.+.+..+..+..
T Consensus 238 i~vSA~~g~GIdeL~~~I~~~~~~l~ 263 (332)
T PRK09435 238 LTCSALEGEGIDEIWQAIEDHRAALT 263 (332)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 99999998888888877765544333
|
|
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.2e-07 Score=78.47 Aligned_cols=132 Identities=16% Similarity=0.149 Sum_probs=86.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchH----HHHhhccceeEeecc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMW----ERYCRGVNAIVWTGG 97 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~----~~~~~~ad~iI~~~~ 97 (329)
||+++|..|+|||||.+++.+.+... .-|-.+.+. .+ -..||||..--+..| -....++|.++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ly--kKTQAve~~---d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~---- 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLY--KKTQAVEFN---DK----GDIDTPGEYFEHPRWYHALITTLQDADVII---- 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhh--cccceeecc---Cc----cccCCchhhhhhhHHHHHHHHHhhccceee----
Confidence 68999999999999999999877542 233333321 11 157999954333333 22345677777
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN 177 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~ 177 (329)
+|-.+.++++. ..--+.. ....|+|-|.+|.|+++
T Consensus 70 -------------------------------------~v~~and~~s~--f~p~f~~------~~~k~vIgvVTK~DLae 104 (148)
T COG4917 70 -------------------------------------YVHAANDPESR--FPPGFLD------IGVKKVIGVVTKADLAE 104 (148)
T ss_pred -------------------------------------eeecccCcccc--CCccccc------ccccceEEEEecccccc
Confidence 88888887641 1111111 13456899999999996
Q ss_pred hhh---HHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 178 ALD---EKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 178 ~~e---~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
..+ .+++..+-|. +.|++|+...+..+++.+.+.
T Consensus 105 d~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~ 142 (148)
T COG4917 105 DADISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLA 142 (148)
T ss_pred hHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHH
Confidence 533 4455555564 699999999888888876654
|
|
| >KOG0099|consensus | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.8e-07 Score=88.83 Aligned_cols=77 Identities=25% Similarity=0.471 Sum_probs=64.8
Q ss_pred eeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEEC
Q psy2970 60 ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDA 139 (329)
Q Consensus 60 i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dv 139 (329)
+..+.++++++|++||.+-+..|..++.++.++| +|+..
T Consensus 197 FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAii-----------------------------------------fv~ac 235 (379)
T KOG0099|consen 197 FQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAII-----------------------------------------FVVAC 235 (379)
T ss_pred EeccccceeeeccCCchhhhhhHHHHhcCccEEE-----------------------------------------EEEec
Confidence 4455677999999999999999999999999999 44433
Q ss_pred C----------CcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC
Q psy2970 140 A----------DTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN 177 (329)
Q Consensus 140 t----------~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~ 177 (329)
+ .++.+.+...+++.+.+..+...+.+||++||.|+..
T Consensus 236 Ssyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDlla 283 (379)
T KOG0099|consen 236 SSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA 283 (379)
T ss_pred cchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHHHH
Confidence 2 2457888899999999999999999999999999854
|
|
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.5e-06 Score=84.39 Aligned_cols=74 Identities=23% Similarity=0.359 Sum_probs=49.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCC-CCC-----CCceeeeEEE----------ee----CceEEEEEEecCCCccc-
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFS-QDM-----IPTVGFNMRK----------IT----KGNVTIKVWDIGGQPRF- 78 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~-~~~-----~pTig~~~~~----------i~----~~~~~l~I~DtpG~e~~- 78 (329)
.+++-++|.||||||||.|+++..... ..| .|-+|..+.. +. ....++++.|++|.-.-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 478999999999999999999987643 222 2334433321 11 12346899999986432
Q ss_pred ------cchHHHHhhccceeE
Q psy2970 79 ------RSMWERYCRGVNAIV 93 (329)
Q Consensus 79 ------~~~~~~~~~~ad~iI 93 (329)
.+..-..+|++|+++
T Consensus 82 s~GeGLGNkFL~~IRevdaI~ 102 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAII 102 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEE
Confidence 334455678999999
|
|
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.5e-07 Score=89.02 Aligned_cols=108 Identities=16% Similarity=0.290 Sum_probs=54.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCC------CceeeeEEEeeCceE-EEEEEecCCCccccchHHHHhhc-
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS-QDMI------PTVGFNMRKITKGNV-TIKVWDIGGQPRFRSMWERYCRG- 88 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~------pTig~~~~~i~~~~~-~l~I~DtpG~e~~~~~~~~~~~~- 88 (329)
..+++|+|+|.+|+|||||||++-+-.-. +... .|.... .+....+ .+.+||+||.....-....|++.
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~--~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~ 110 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPT--PYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEV 110 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-E--EEE-SS-TTEEEEEE--GGGSS--HHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCe--eCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHc
Confidence 45799999999999999999999652211 1111 111111 1111222 47899999964433334445443
Q ss_pred ----cceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCC
Q psy2970 89 ----VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGI 164 (329)
Q Consensus 89 ----ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~i 164 (329)
-|.+| ++.+- .|.....++...++. .+.
T Consensus 111 ~~~~yD~fi-----------------------------------------ii~s~----rf~~ndv~La~~i~~---~gK 142 (376)
T PF05049_consen 111 KFYRYDFFI-----------------------------------------IISSE----RFTENDVQLAKEIQR---MGK 142 (376)
T ss_dssp TGGG-SEEE-----------------------------------------EEESS----S--HHHHHHHHHHHH---TT-
T ss_pred cccccCEEE-----------------------------------------EEeCC----CCchhhHHHHHHHHH---cCC
Confidence 44444 44442 344444444444343 578
Q ss_pred cEEEEEEcCCC
Q psy2970 165 PILVLGNKRDL 175 (329)
Q Consensus 165 PIiLVgNK~Dl 175 (329)
|+.+|-+|+|.
T Consensus 143 ~fyfVRTKvD~ 153 (376)
T PF05049_consen 143 KFYFVRTKVDS 153 (376)
T ss_dssp EEEEEE--HHH
T ss_pred cEEEEEecccc
Confidence 99999999996
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.3e-06 Score=82.29 Aligned_cols=51 Identities=18% Similarity=0.069 Sum_probs=34.2
Q ss_pred CCCcEEEEEEcCCCCChhhHH-----------HHHHH---hCCcEEEEeccchHHHHHHhhhhcC
Q psy2970 162 IGIPILVLGNKRDLPNALDEK-----------ELIDR---IMIDFWITLTLLIRWCESFLHHFGS 212 (329)
Q Consensus 162 ~~iPIiLVgNK~Dl~~~~e~~-----------~l~~~---~~~~~~etSAk~~~~~~~~l~~i~~ 212 (329)
.++|.++|.||+|+....+.. .+.++ +..+++.+||++....+.+...+..
T Consensus 171 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~ 235 (300)
T TIGR00750 171 MEIADIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEE 235 (300)
T ss_pred hhhccEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHH
Confidence 346779999999998754321 11111 2246899999997777777766644
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=98.40 E-value=9.9e-07 Score=78.57 Aligned_cols=56 Identities=21% Similarity=0.393 Sum_probs=38.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCceeeeEEEeeCceEEEEEEecCC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQF-SQDMIPTVGFNMRKITKGNVTIKVWDIGG 74 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~-~~~~~pTig~~~~~i~~~~~~l~I~DtpG 74 (329)
+..++++++|.||||||||+|++.+... .....|.+......+..+ -.+.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~-~~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD-KKVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC-CCEEEEECcC
Confidence 4458999999999999999999998665 223333333333333221 2578999999
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.7e-06 Score=87.67 Aligned_cols=133 Identities=20% Similarity=0.285 Sum_probs=92.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC--CCC------------CCCceeeeEE----EeeCceEEEEEEecCCCccccchH
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQF--SQD------------MIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMW 82 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~--~~~------------~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~ 82 (329)
-+|+++-.-.-|||||+.+++.+.. ... ....-|+.+. .+..++++++|.||||+.+|....
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV 85 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV 85 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence 3688898889999999999986432 110 0011112221 267888999999999999999988
Q ss_pred HHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCC
Q psy2970 83 ERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLI 162 (329)
Q Consensus 83 ~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~ 162 (329)
+..+.-+|+++ +++|+.+- .+...+-.++..++ .
T Consensus 86 ERvl~MVDgvl-----------------------------------------LlVDA~EG-pMPQTrFVlkKAl~----~ 119 (603)
T COG1217 86 ERVLSMVDGVL-----------------------------------------LLVDASEG-PMPQTRFVLKKALA----L 119 (603)
T ss_pred hhhhhhcceEE-----------------------------------------EEEEcccC-CCCchhhhHHHHHH----c
Confidence 88999999999 99998752 23333444444443 3
Q ss_pred CCcEEEEEEcCCCCCh------hhHHHHH-------HHhCCcEEEEeccc
Q psy2970 163 GIPILVLGNKRDLPNA------LDEKELI-------DRIMIDFWITLTLL 199 (329)
Q Consensus 163 ~iPIiLVgNK~Dl~~~------~e~~~l~-------~~~~~~~~etSAk~ 199 (329)
+.+-|||.||+|.+++ ++.-++- ++++.|.+..|++.
T Consensus 120 gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~ 169 (603)
T COG1217 120 GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYASARN 169 (603)
T ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccC
Confidence 5566799999999886 2222332 34557889999887
|
|
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.6e-06 Score=77.42 Aligned_cols=72 Identities=21% Similarity=0.129 Sum_probs=47.0
Q ss_pred hcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcE--EEEEEcCCCCCh-----hhHHHHHHH--hCCcEEEEeccc
Q psy2970 129 LFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPI--LVLGNKRDLPNA-----LDEKELIDR--IMIDFWITLTLL 199 (329)
Q Consensus 129 ~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPI--iLVgNK~Dl~~~-----~e~~~l~~~--~~~~~~etSAk~ 199 (329)
+.+.++.|+|+++.++... ... ..+.. ++++||+|+.+. ...++..+. .+.+++++||++
T Consensus 112 l~~~~i~vvD~~~~~~~~~---~~~--------~qi~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~ 180 (199)
T TIGR00101 112 LADLTIFVIDVAAGDKIPR---KGG--------PGITRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKT 180 (199)
T ss_pred hhCcEEEEEEcchhhhhhh---hhH--------hHhhhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCC
Confidence 3566889999987554221 111 12223 789999999753 122333343 347899999999
Q ss_pred hHHHHHHhhhhc
Q psy2970 200 IRWCESFLHHFG 211 (329)
Q Consensus 200 ~~~~~~~l~~i~ 211 (329)
+.+.+++++.+.
T Consensus 181 g~gi~el~~~i~ 192 (199)
T TIGR00101 181 KEGLDTVIDWIE 192 (199)
T ss_pred CCCHHHHHHHHH
Confidence 888888887665
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.35 E-value=2e-06 Score=74.23 Aligned_cols=55 Identities=22% Similarity=0.283 Sum_probs=36.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCceeeeEEEeeCceEEEEEEecCC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVGFNMRKITKGNVTIKVWDIGG 74 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig~~~~~i~~~~~~l~I~DtpG 74 (329)
+...|+++|.||||||||+|++.+.... ....|........+... -.+.+.||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLM-KRIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcC-CCEEEEECcC
Confidence 5688999999999999999999986542 22222222222222211 1367999999
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.4e-05 Score=75.21 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
.--+++++|+.|+||||+++.+.+..
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~ 50 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRD 50 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCC
Confidence 34589999999999999999999865
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.9e-06 Score=76.58 Aligned_cols=56 Identities=27% Similarity=0.423 Sum_probs=37.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCC---------CCCCCCceeeeEEEeeCceEEEEEEecCCC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQF---------SQDMIPTVGFNMRKITKGNVTIKVWDIGGQ 75 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~---------~~~~~pTig~~~~~i~~~~~~l~I~DtpG~ 75 (329)
++.+++++|.+|||||||+|++.+... .....|.+......+..+. .+.++||||.
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~DtPG~ 190 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN-GKKLYDTPGI 190 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-CCEEEeCcCC
Confidence 457899999999999999999987432 2222333333333333222 4789999993
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.8e-06 Score=85.52 Aligned_cols=127 Identities=20% Similarity=0.255 Sum_probs=90.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc--CCC--------------C--------CCCCCceeeeEEEeeCceEEEEEEecCC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS--GQF--------------S--------QDMIPTVGFNMRKITKGNVTIKVWDIGG 74 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~--~~~--------------~--------~~~~pTig~~~~~i~~~~~~l~I~DtpG 74 (329)
++-..+++--|.+|||||..+++- +-+ . .+..-.+...+.++++++..+++.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 445678899999999999999852 111 0 1111222233446789999999999999
Q ss_pred CccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHH
Q psy2970 75 QPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHA 154 (329)
Q Consensus 75 ~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~ 154 (329)
+++|..-.-..+..+|..+ +|+|+..- .+.....+-+
T Consensus 91 HeDFSEDTYRtLtAvDsAv-----------------------------------------MVIDaAKG--iE~qT~KLfe 127 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAV-----------------------------------------MVIDAAKG--IEPQTLKLFE 127 (528)
T ss_pred ccccchhHHHHHHhhheee-----------------------------------------EEEecccC--ccHHHHHHHH
Confidence 9999888777788899999 99998752 2333333344
Q ss_pred HHhCCcCCCCcEEEEEEcCCCCCh---hhHHHHHHHhCCc
Q psy2970 155 LIEKPQLIGIPILVLGNKRDLPNA---LDEKELIDRIMID 191 (329)
Q Consensus 155 i~~~~~~~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~~~ 191 (329)
+.+ ..++||+-+.||.|.+.. +-++++.+++++.
T Consensus 128 Vcr---lR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~ 164 (528)
T COG4108 128 VCR---LRDIPIFTFINKLDREGRDPLELLDEIEEELGIQ 164 (528)
T ss_pred HHh---hcCCceEEEeeccccccCChHHHHHHHHHHhCcc
Confidence 433 468999999999998765 3366777888764
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.5e-06 Score=73.93 Aligned_cols=54 Identities=22% Similarity=0.306 Sum_probs=35.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCceeeeEEEeeCceEEEEEEecCCC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQ-DMIPTVGFNMRKITKGNVTIKVWDIGGQ 75 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~-~~~pTig~~~~~i~~~~~~l~I~DtpG~ 75 (329)
-+++++|.+|||||||+|++.++.... ...+..+.....+..+. .+.+|||||.
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence 489999999999999999999877531 11122222222222211 5789999995
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.7e-06 Score=80.46 Aligned_cols=71 Identities=25% Similarity=0.305 Sum_probs=45.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCC-CC-CCceeeeEEEe--eCc---------------eEEEEEEecCCCcccc----
Q psy2970 23 LTLVGLQCSGKTTFVNVIASGQFSQ-DM-IPTVGFNMRKI--TKG---------------NVTIKVWDIGGQPRFR---- 79 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~~~~~-~~-~pTig~~~~~i--~~~---------------~~~l~I~DtpG~e~~~---- 79 (329)
|.++|.||||||||+|++++.+... .+ ..|+......+ ... ..++++.|+||..+-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5789999999999999999977632 22 23334333322 111 1258999999965321
Q ss_pred chH---HHHhhccceeE
Q psy2970 80 SMW---ERYCRGVNAIV 93 (329)
Q Consensus 80 ~~~---~~~~~~ad~iI 93 (329)
.+. -..++.+|+++
T Consensus 81 glg~~fL~~i~~~D~li 97 (274)
T cd01900 81 GLGNKFLSHIREVDAIA 97 (274)
T ss_pred HHHHHHHHHHHhCCEEE
Confidence 122 23456799999
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=98.26 E-value=8.8e-06 Score=85.94 Aligned_cols=59 Identities=22% Similarity=0.229 Sum_probs=41.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCC-CCC-C-CCceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQF-SQD-M-IPTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~-~~~-~-~pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
.++|+|+|.+||||||++|.+++.+. ... . ..|+..........+..+.++||||..+.
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt 179 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSS 179 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCcc
Confidence 46899999999999999999998763 221 1 23443322222334578999999997654
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.4e-06 Score=72.76 Aligned_cols=57 Identities=21% Similarity=0.277 Sum_probs=38.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCceeeeEEEeeCceEEEEEEecCCC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVGFNMRKITKGNVTIKVWDIGGQ 75 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig~~~~~i~~~~~~l~I~DtpG~ 75 (329)
...++++++|.+|||||||+|++.+..+. ....+.+......+... ..+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence 45589999999999999999999987753 22222222222222221 45789999994
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.4e-06 Score=71.18 Aligned_cols=55 Identities=20% Similarity=0.358 Sum_probs=38.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--EeeCceEEEEEEecCC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--KITKGNVTIKVWDIGG 74 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~i~~~~~~l~I~DtpG 74 (329)
....+++++|.+|||||||+|++.++... .+.++.|.... .+.. +..+.+|||||
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~-~~~~~~~DtpG 155 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKI-TSKIYLLDTPG 155 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEc-CCCEEEEECcC
Confidence 35678999999999999999999976532 33444444322 1222 23688999999
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.5e-05 Score=85.06 Aligned_cols=125 Identities=23% Similarity=0.219 Sum_probs=84.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc--CCCCC------------------CCCCceeeeEEEeeCc-eEEEEEEecCCCcc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS--GQFSQ------------------DMIPTVGFNMRKITKG-NVTIKVWDIGGQPR 77 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~--~~~~~------------------~~~pTig~~~~~i~~~-~~~l~I~DtpG~e~ 77 (329)
+--+|.++|.-.+|||||..+++- +.... ...-|+......+..+ ++.+++.||||+-+
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD 88 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD 88 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc
Confidence 445899999999999999999963 11110 0011222222234455 59999999999999
Q ss_pred ccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHh
Q psy2970 78 FRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIE 157 (329)
Q Consensus 78 ~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~ 157 (329)
|.......++-.|+.+ +|+|+..--..+.- ..+++..
T Consensus 89 Ft~EV~rslrvlDgav-----------------------------------------vVvdaveGV~~QTE-tv~rqa~- 125 (697)
T COG0480 89 FTIEVERSLRVLDGAV-----------------------------------------VVVDAVEGVEPQTE-TVWRQAD- 125 (697)
T ss_pred cHHHHHHHHHhhcceE-----------------------------------------EEEECCCCeeecHH-HHHHHHh-
Confidence 9998889999999999 99998753222222 2333332
Q ss_pred CCcCCCCcEEEEEEcCCCCCh---hhHHHHHHHhC
Q psy2970 158 KPQLIGIPILVLGNKRDLPNA---LDEKELIDRIM 189 (329)
Q Consensus 158 ~~~~~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~ 189 (329)
..++|.+++.||.|.... ...+++.+.++
T Consensus 126 ---~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~ 157 (697)
T COG0480 126 ---KYGVPRILFVNKMDRLGADFYLVVEQLKERLG 157 (697)
T ss_pred ---hcCCCeEEEEECccccccChhhhHHHHHHHhC
Confidence 357999999999998765 23444444444
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.16 E-value=9.2e-06 Score=77.66 Aligned_cols=58 Identities=21% Similarity=0.315 Sum_probs=39.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCceeeeEEEeeCceEEEEEEecCCCc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQF-SQDMIPTVGFNMRKITKGNVTIKVWDIGGQP 76 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~-~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e 76 (329)
++.++++++|.||||||||+|++.+.+. .....|.++.....+..+ -.+.++||||..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLG-KGLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeC-CcEEEEECCCcC
Confidence 4568999999999999999999998765 222233333333323221 247899999964
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.14 E-value=7.7e-06 Score=77.70 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=38.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCceeeeEEEeeCceEEEEEEecCCC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVGFNMRKITKGNVTIKVWDIGGQ 75 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig~~~~~i~~~~~~l~I~DtpG~ 75 (329)
.+.++++++|.||||||||+|++.+.... ....|.++.....+... -.+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS-DGLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC-CCEEEEECCCc
Confidence 45689999999999999999999986642 22222222222222221 14689999997
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.1e-05 Score=77.73 Aligned_cols=49 Identities=20% Similarity=0.198 Sum_probs=35.0
Q ss_pred CCcEEEEEEcCCCCCh--hhHHHHHH---Hh--CCcEEEEeccchHHHHHHhhhhc
Q psy2970 163 GIPILVLGNKRDLPNA--LDEKELID---RI--MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 163 ~iPIiLVgNK~Dl~~~--~e~~~l~~---~~--~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
..+-++|+||+|+... .+.+++.+ ++ ..+.+++||+++...+++.+.+.
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~ 285 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLE 285 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 4567899999999763 23333333 33 37899999999888888877654
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.3e-05 Score=77.27 Aligned_cols=140 Identities=17% Similarity=0.195 Sum_probs=91.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCC------------------------C-----------CCCCCCceeeeEEEee
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQ------------------------F-----------SQDMIPTVGFNMRKIT 61 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~------------------------~-----------~~~~~pTig~~~~~i~ 61 (329)
.+..++++-.|.-.=||||||-|++.+. + .....-|+.+.|+-+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 4567899999999999999999985310 0 0123456677777787
Q ss_pred CceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCC
Q psy2970 62 KGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAAD 141 (329)
Q Consensus 62 ~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~ 141 (329)
-..-++.|-||||++.|...-..-...||..| +++|+-.
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAI-----------------------------------------lLVDAR~ 121 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAI-----------------------------------------LLVDARK 121 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEE-----------------------------------------EEEecch
Confidence 78888999999999987432222233456666 9999842
Q ss_pred cccHHHHHHHHHHHHhCCcCCCCc-EEEEEEcCCCCCh---------hhHHHHHHHhCC---cEEEEeccchHH
Q psy2970 142 TDKLEASRNELHALIEKPQLIGIP-ILVLGNKRDLPNA---------LDEKELIDRIMI---DFWITLTLLIRW 202 (329)
Q Consensus 142 ~~S~~~~~~~l~~i~~~~~~~~iP-IiLVgNK~Dl~~~---------~e~~~l~~~~~~---~~~etSAk~~~~ 202 (329)
-..+...--.-+.. ..++. ++|..||+||.+- .+-..|++++++ .+++.||..+.+
T Consensus 122 --Gvl~QTrRHs~I~s---LLGIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDN 190 (431)
T COG2895 122 --GVLEQTRRHSFIAS---LLGIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDN 190 (431)
T ss_pred --hhHHHhHHHHHHHH---HhCCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCc
Confidence 11111111111111 23444 6778899999873 234567888875 599999998443
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.6e-06 Score=70.27 Aligned_cols=72 Identities=17% Similarity=0.097 Sum_probs=47.4
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhHHH---HHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKE---LIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~~---l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+|++++..... .. +.+... ..+.|+++|+||+|+.+..+.++ +.+..+.+++.+||+++...+++.+.+.
T Consensus 18 ~V~D~~~~~~~~~-~~-l~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~~gi~~L~~~l~ 92 (156)
T cd01859 18 EVLDARDPELTRS-RK-LERYVL---ELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERLGTKILRRTIK 92 (156)
T ss_pred EEeeCCCCcccCC-HH-HHHHHH---hCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccccccHHHHHHHHH
Confidence 9999987643222 11 222222 24689999999999976533322 3344567899999999877887776664
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >KOG0705|consensus | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.5e-06 Score=84.70 Aligned_cols=146 Identities=20% Similarity=0.355 Sum_probs=111.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
-.++|+-++|..++|||+|+.+++.+.+.+.. .+.+-.+++ ++++...+-+.|.+|.. -..|...+|++|
T Consensus 28 ipelk~givg~~~sgktalvhr~ltgty~~~e-~~e~~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavI- 100 (749)
T KOG0705|consen 28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDE-SPEGGRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVV- 100 (749)
T ss_pred cchhheeeeecccCCceeeeeeeccceecccc-CCcCccceeeEEeeccceEeeeecccCCc-----hhhhhhhccceE-
Confidence 36899999999999999999999999887553 344544443 46777888899998833 245788899999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+||.+.+..+|+.+..+..++........+|.++++++.-
T Consensus 101 ----------------------------------------fvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~ 140 (749)
T KOG0705|consen 101 ----------------------------------------FVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDH 140 (749)
T ss_pred ----------------------------------------EEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcch
Confidence 9999999999999999988887666667899999998843
Q ss_pred CCCh-------hh-HHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 175 LPNA-------LD-EKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 175 l~~~-------~e-~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
.... .+ .+..++...+.++++.|..+...+..++.+
T Consensus 141 iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~~ 184 (749)
T KOG0705|consen 141 ISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQEV 184 (749)
T ss_pred hhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHHHH
Confidence 2211 22 334455556889999999966666666544
|
|
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.6e-05 Score=74.70 Aligned_cols=57 Identities=25% Similarity=0.390 Sum_probs=42.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCC----------CCCCceeeeEEE--e--eCceEEEEEEecCCC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQ----------DMIPTVGFNMRK--I--TKGNVTIKVWDIGGQ 75 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~----------~~~pTig~~~~~--i--~~~~~~l~I~DtpG~ 75 (329)
-.+.|+++|+.|.|||||+|.|++..... ...||+.....+ + ++-.+.+.+.||||.
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGf 92 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGF 92 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCc
Confidence 46899999999999999999998763321 134666666554 3 344567889999995
|
|
| >KOG1954|consensus | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.1e-05 Score=75.99 Aligned_cols=116 Identities=22% Similarity=0.248 Sum_probs=75.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC---CCCCCceeeeEEE--------eeCce-------------------------
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS---QDMIPTVGFNMRK--------ITKGN------------------------- 64 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~---~~~~pTig~~~~~--------i~~~~------------------------- 64 (329)
--|+++|.-..||||||+.+++++++ ....||+..-+.- +++..
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~c 138 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMC 138 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHH
Confidence 46999999999999999999999886 2334555422210 11110
Q ss_pred --------EEEEEEecCCCccc-----------cchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhh
Q psy2970 65 --------VTIKVWDIGGQPRF-----------RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMW 125 (329)
Q Consensus 65 --------~~l~I~DtpG~e~~-----------~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (329)
-.+.|.||||...- ....+-+...+|.|+
T Consensus 139 sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~Ii-------------------------------- 186 (532)
T KOG1954|consen 139 SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRII-------------------------------- 186 (532)
T ss_pred hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEE--------------------------------
Confidence 13788999985432 233344556666666
Q ss_pred hhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhH
Q psy2970 126 LSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDE 181 (329)
Q Consensus 126 ~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~ 181 (329)
++||....+--++....+..+... .-.+-||+||.|..+..++
T Consensus 187 ---------LlfD~hKLDIsdEf~~vi~aLkG~----EdkiRVVLNKADqVdtqqL 229 (532)
T KOG1954|consen 187 ---------LLFDAHKLDISDEFKRVIDALKGH----EDKIRVVLNKADQVDTQQL 229 (532)
T ss_pred ---------EEechhhccccHHHHHHHHHhhCC----cceeEEEeccccccCHHHH
Confidence 999987655444555555555443 2347788999999987553
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.7e-05 Score=78.42 Aligned_cols=75 Identities=13% Similarity=0.028 Sum_probs=55.6
Q ss_pred EEEECCCcc-cHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhHHHHH---HHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 135 YMVDAADTD-KLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELI---DRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 135 lV~Dvt~~~-S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~~l~---~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+|+|+.+++ ....+..++..+. ..++|++||+||+||.+..+.+.+. +.++++++.+||++..+.+++++.+
T Consensus 95 lV~d~~~p~~~~~~LdR~L~~a~----~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~GI~eL~~~L 170 (352)
T PRK12289 95 LVFALAEPPLDPWQLSRFLVKAE----STGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIGLEALLEQL 170 (352)
T ss_pred EEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHhhhh
Confidence 999998876 4445556655442 3578999999999998765444444 3568899999999988888888777
Q ss_pred cCC
Q psy2970 211 GSH 213 (329)
Q Consensus 211 ~~~ 213 (329)
...
T Consensus 171 ~~k 173 (352)
T PRK12289 171 RNK 173 (352)
T ss_pred ccc
Confidence 543
|
|
| >KOG2655|consensus | Back alignment and domain information |
|---|
Probab=98.02 E-value=5.7e-05 Score=74.82 Aligned_cols=57 Identities=28% Similarity=0.362 Sum_probs=41.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCC---------CCCCceeeeEEE--e--eCceEEEEEEecCCCc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQ---------DMIPTVGFNMRK--I--TKGNVTIKVWDIGGQP 76 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~---------~~~pTig~~~~~--i--~~~~~~l~I~DtpG~e 76 (329)
.+.++++|++|.|||||+|.|+..++.. ....|+.+...+ + ++-.+++.+.||||.-
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfG 90 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFG 90 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCc
Confidence 5999999999999999999998765432 122344544444 2 3445678899999953
|
|
| >KOG0468|consensus | Back alignment and domain information |
|---|
Probab=98.01 E-value=3e-05 Score=81.44 Aligned_cols=112 Identities=21% Similarity=0.253 Sum_probs=79.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCc---------------eeeeEE---------EeeCceEEEEEEecCC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPT---------------VGFNMR---------KITKGNVTIKVWDIGG 74 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pT---------------ig~~~~---------~i~~~~~~l~I~DtpG 74 (329)
.-.++.++|.-..|||+|+..+..+..++...++ -|..++ ..+++.+-+++.||||
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG 206 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG 206 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence 3468999999999999999999876543211110 011111 1356677899999999
Q ss_pred CccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHH
Q psy2970 75 QPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHA 154 (329)
Q Consensus 75 ~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~ 154 (329)
+-.|.......++-+|+++ +|+|+.+--.+..- ..++.
T Consensus 207 HVnF~DE~ta~l~~sDgvV-----------------------------------------lvvDv~EGVmlntE-r~ikh 244 (971)
T KOG0468|consen 207 HVNFSDETTASLRLSDGVV-----------------------------------------LVVDVAEGVMLNTE-RIIKH 244 (971)
T ss_pred cccchHHHHHHhhhcceEE-----------------------------------------EEEEcccCceeeHH-HHHHH
Confidence 9999888888889999999 99999865444333 33333
Q ss_pred HHhCCcCCCCcEEEEEEcCCCC
Q psy2970 155 LIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 155 i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
.+ ..+.|+.+|.||+|..
T Consensus 245 ai----q~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 245 AI----QNRLPIVVVINKVDRL 262 (971)
T ss_pred HH----hccCcEEEEEehhHHH
Confidence 33 3578999999999963
|
|
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.5e-05 Score=78.62 Aligned_cols=147 Identities=18% Similarity=0.168 Sum_probs=96.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC-----CCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFS-----QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~-----~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
-|...|.---|||||++.+++..-. .+...|+...+...+.++..+.+.|+||.+++-.-.-.-....|..+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~al--- 78 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYAL--- 78 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEE---
Confidence 3566777888999999999875432 33456777777777667779999999998876333222333444445
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCc-EEEEEEcCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIP-ILVLGNKRDL 175 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iP-IiLVgNK~Dl 175 (329)
+|+|.++-- .........+++. .+++ .++|+||+|.
T Consensus 79 --------------------------------------LvV~~deGl--~~qtgEhL~iLdl---lgi~~giivltk~D~ 115 (447)
T COG3276 79 --------------------------------------LVVAADEGL--MAQTGEHLLILDL---LGIKNGIIVLTKADR 115 (447)
T ss_pred --------------------------------------EEEeCccCc--chhhHHHHHHHHh---cCCCceEEEEecccc
Confidence 999985411 1111111122232 3333 5899999999
Q ss_pred CChhhHHHHHHHhC-------CcEEEEeccchHHHHHHhhhhcCCC
Q psy2970 176 PNALDEKELIDRIM-------IDFWITLTLLIRWCESFLHHFGSHP 214 (329)
Q Consensus 176 ~~~~e~~~l~~~~~-------~~~~etSAk~~~~~~~~l~~i~~~~ 214 (329)
.++.+.++..+++. .+++.+|+++++..+++-+.+...+
T Consensus 116 ~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 116 VDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred ccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhh
Confidence 98755555554442 4679999999988888887776444
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.9e-05 Score=67.01 Aligned_cols=56 Identities=20% Similarity=0.287 Sum_probs=38.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCC--CceeeeEEEeeCceEEEEEEecCCC
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQF-SQDMI--PTVGFNMRKITKGNVTIKVWDIGGQ 75 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~-~~~~~--pTig~~~~~i~~~~~~l~I~DtpG~ 75 (329)
..+...++++|.+|||||||+|.+.+... ..... .|.......++ ..+.+.||||.
T Consensus 97 ~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtPG~ 155 (155)
T cd01849 97 LKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD---NKIKLLDTPGI 155 (155)
T ss_pred cccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec---CCEEEEECCCC
Confidence 34678899999999999999999998653 22222 23333222222 35789999993
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.4e-05 Score=75.28 Aligned_cols=78 Identities=17% Similarity=0.014 Sum_probs=55.9
Q ss_pred ceeEEEEECCCcccHHHH-HHHHHHHHhCCcCCCCcEEEEEEcCCCCCh-hh---HHHHHHHhCCcEEEEeccchHHHHH
Q psy2970 131 QLIKYMVDAADTDKLEAS-RNELHALIEKPQLIGIPILVLGNKRDLPNA-LD---EKELIDRIMIDFWITLTLLIRWCES 205 (329)
Q Consensus 131 ~~~~lV~Dvt~~~S~~~~-~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~-~e---~~~l~~~~~~~~~etSAk~~~~~~~ 205 (329)
+++++|+|+++++++... ..|+..+ . ..++|+++|+||+|+.+. .. ..+..++++++++++||++..+.++
T Consensus 82 D~vllV~d~~~p~~~~~~idr~L~~~-~---~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~ 157 (298)
T PRK00098 82 DQAVLVFAAKEPDFSTDLLDRFLVLA-E---ANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEGLDE 157 (298)
T ss_pred CEEEEEEECCCCCCCHHHHHHHHHHH-H---HCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccHHH
Confidence 444499999988766554 4444444 3 257899999999999633 22 3344556788999999999888888
Q ss_pred HhhhhcC
Q psy2970 206 FLHHFGS 212 (329)
Q Consensus 206 ~l~~i~~ 212 (329)
+.+.+..
T Consensus 158 L~~~l~g 164 (298)
T PRK00098 158 LKPLLAG 164 (298)
T ss_pred HHhhccC
Confidence 8877653
|
|
| >KOG0461|consensus | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00017 Score=71.28 Aligned_cols=146 Identities=13% Similarity=0.151 Sum_probs=85.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC----CCC-----CCCCCceeeeEEEe---------eCceEEEEEEecCCCcccc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG----QFS-----QDMIPTVGFNMRKI---------TKGNVTIKVWDIGGQPRFR 79 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~----~~~-----~~~~pTig~~~~~i---------~~~~~~l~I~DtpG~e~~~ 79 (329)
..++++-++|.-.+|||||.+++..- -|. ....-|....+..+ .++.+++.+.|.||+...
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL- 83 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL- 83 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH-
Confidence 45689999999999999999999642 121 11112222223221 456788999999996432
Q ss_pred chHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHH-HHHHHHHhC
Q psy2970 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASR-NELHALIEK 158 (329)
Q Consensus 80 ~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~-~~l~~i~~~ 158 (329)
.+ .+| ..+.++|++++|+|+..-..-+... -.+.++..
T Consensus 84 --IR-------tii-------------------------------ggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c- 122 (522)
T KOG0461|consen 84 --IR-------TII-------------------------------GGAQIIDLMILVIDVQKGKQTQTAECLIIGELLC- 122 (522)
T ss_pred --HH-------HHH-------------------------------hhhheeeeeeEEEehhcccccccchhhhhhhhhc-
Confidence 11 111 2345668888999987532111111 12233322
Q ss_pred CcCCCCcEEEEEEcCCCCCh----hhHHHHH----HHh-------CCcEEEEeccch----HHHHHHhhhh
Q psy2970 159 PQLIGIPILVLGNKRDLPNA----LDEKELI----DRI-------MIDFWITLTLLI----RWCESFLHHF 210 (329)
Q Consensus 159 ~~~~~iPIiLVgNK~Dl~~~----~e~~~l~----~~~-------~~~~~etSAk~~----~~~~~~l~~i 210 (329)
...+||.||+|+-.+ ...++.+ +-+ +.|.+++||+.+ +...++.+.+
T Consensus 123 -----~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l 188 (522)
T KOG0461|consen 123 -----KKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEAL 188 (522)
T ss_pred -----cceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHH
Confidence 236788888886443 2233333 332 268999999995 4445544444
|
|
| >KOG0458|consensus | Back alignment and domain information |
|---|
Probab=97.89 E-value=4e-05 Score=79.33 Aligned_cols=143 Identities=19% Similarity=0.171 Sum_probs=86.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHc--------------------CCCC-----------CCC--CCceeeeEEEeeCc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIAS--------------------GQFS-----------QDM--IPTVGFNMRKITKG 63 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~--------------------~~~~-----------~~~--~pTig~~~~~i~~~ 63 (329)
-+..+.++++|.-.+|||||+-+++- ++.. ++. .-|..+....++..
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK 253 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence 34568999999999999999999842 1111 000 11111222236677
Q ss_pred eEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc
Q psy2970 64 NVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD 143 (329)
Q Consensus 64 ~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~ 143 (329)
...+.+.|.||+.+|..-.-.-...+|..+ +|+|++.-
T Consensus 254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~av-----------------------------------------Lvvd~s~~- 291 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIPNMISGASQADVAV-----------------------------------------LVVDASTG- 291 (603)
T ss_pred ceeEEEecCCCccccchhhhccccccceEE-----------------------------------------EEEECCcc-
Confidence 788999999998877554444455667777 99998642
Q ss_pred cHHH---H---HHHHHHHHhCCcCCCCcEEEEEEcCCCCC--hhhHHH-------HH-HHhC-----CcEEEEeccchHH
Q psy2970 144 KLEA---S---RNELHALIEKPQLIGIPILVLGNKRDLPN--ALDEKE-------LI-DRIM-----IDFWITLTLLIRW 202 (329)
Q Consensus 144 S~~~---~---~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~--~~e~~~-------l~-~~~~-----~~~~etSAk~~~~ 202 (329)
.|+. . ......+++... -.-++|+.||.|+.+ ++..++ +. +..| +.|+.+|+.++.+
T Consensus 292 ~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeN 369 (603)
T KOG0458|consen 292 EFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGEN 369 (603)
T ss_pred hhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCc
Confidence 2332 1 222333334322 234788999999986 222233 22 3333 4799999999444
Q ss_pred H
Q psy2970 203 C 203 (329)
Q Consensus 203 ~ 203 (329)
+
T Consensus 370 L 370 (603)
T KOG0458|consen 370 L 370 (603)
T ss_pred c
Confidence 3
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=97.87 E-value=3e-05 Score=68.91 Aligned_cols=86 Identities=16% Similarity=0.091 Sum_probs=57.9
Q ss_pred ccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHh
Q psy2970 78 FRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIE 157 (329)
Q Consensus 78 ~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~ 157 (329)
++.++..+++++|+++ +|+|++++.. . +..++..
T Consensus 24 ~~~~l~~~~~~ad~il-----------------------------------------~VvD~~~~~~--~---~~~~l~~ 57 (190)
T cd01855 24 ILNLLSSISPKKALVV-----------------------------------------HVVDIFDFPG--S---LIPRLRL 57 (190)
T ss_pred HHHHHHhcccCCcEEE-----------------------------------------EEEECccCCC--c---cchhHHH
Confidence 5677788889999999 9999987642 1 1111111
Q ss_pred CCcCCCCcEEEEEEcCCCCChh----hHHHHH-----HHhCC---cEEEEeccchHHHHHHhhhhc
Q psy2970 158 KPQLIGIPILVLGNKRDLPNAL----DEKELI-----DRIMI---DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 158 ~~~~~~iPIiLVgNK~Dl~~~~----e~~~l~-----~~~~~---~~~etSAk~~~~~~~~l~~i~ 211 (329)
. ..+.|+++|+||+|+.... ..+.+. +..+. +++++||+++.+.+++++.+.
T Consensus 58 ~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~ 121 (190)
T cd01855 58 F--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILISAKKGWGVEELINAIK 121 (190)
T ss_pred h--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHH
Confidence 1 2468999999999986432 233333 23343 589999999777777776664
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=4.2e-05 Score=74.64 Aligned_cols=58 Identities=21% Similarity=0.296 Sum_probs=40.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCceeeeEEEeeCceEEEEEEecCCCc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVGFNMRKITKGNVTIKVWDIGGQP 76 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig~~~~~i~~~~~~l~I~DtpG~e 76 (329)
++..++.++|.||||||||||+|.+.... ....|.+.-....+.... .+.++||||.-
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~-~i~LlDtPGii 188 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDD-GIYLLDTPGII 188 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCC-CeEEecCCCcC
Confidence 45688999999999999999999987652 333444333333332111 17899999954
|
|
| >KOG1486|consensus | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00022 Score=67.91 Aligned_cols=58 Identities=21% Similarity=0.292 Sum_probs=41.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCC-CceeeeEEEeeCceEEEEEEecCCCcc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFS-QDMI-PTVGFNMRKITKGNVTIKVWDIGGQPR 77 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~-pTig~~~~~i~~~~~~l~I~DtpG~e~ 77 (329)
.-+|+++|.|.||||||+..++.-... ..|. .|....-..+.+++-.+++.|+||...
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIie 121 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIE 121 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCccccc
Confidence 468999999999999999999875432 2233 233333334677888999999999654
|
|
| >KOG0410|consensus | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.9e-05 Score=77.10 Aligned_cols=144 Identities=14% Similarity=0.151 Sum_probs=86.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCceeeeEEEee-CceEEEEEEecCCCcccc--chH------HHHhhc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTVGFNMRKIT-KGNVTIKVWDIGGQPRFR--SMW------ERYCRG 88 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~--~~~~pTig~~~~~i~-~~~~~l~I~DtpG~e~~~--~~~------~~~~~~ 88 (329)
.--|.++|..|+|||||++++++.... .....|.....+... ..+-.+-+.||-|...-- .+. -....+
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLeeVae 257 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAE 257 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhh
Confidence 357999999999999999999965543 223344444443322 122345678999953211 111 123456
Q ss_pred cceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCc---
Q psy2970 89 VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIP--- 165 (329)
Q Consensus 89 ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iP--- 165 (329)
+|.++ -|.|++.|+- +....-....++....+..|
T Consensus 258 adlll-----------------------------------------HvvDiShP~a-e~q~e~Vl~vL~~igv~~~pkl~ 295 (410)
T KOG0410|consen 258 ADLLL-----------------------------------------HVVDISHPNA-EEQRETVLHVLNQIGVPSEPKLQ 295 (410)
T ss_pred cceEE-----------------------------------------EEeecCCccH-HHHHHHHHHHHHhcCCCcHHHHh
Confidence 77777 9999999864 33333333333332333333
Q ss_pred -EEEEEEcCCCCChh-hHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 166 -ILVLGNKRDLPNAL-DEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 166 -IiLVgNK~Dl~~~~-e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
++=|-||+|..... +.+ +.+ -+.+||+++...+++.+.+.
T Consensus 296 ~mieVdnkiD~e~~~~e~E----~n~--~v~isaltgdgl~el~~a~~ 337 (410)
T KOG0410|consen 296 NMIEVDNKIDYEEDEVEEE----KNL--DVGISALTGDGLEELLKAEE 337 (410)
T ss_pred HHHhhccccccccccCccc----cCC--ccccccccCccHHHHHHHHH
Confidence 34477888876642 211 111 56789999888888887664
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=97.81 E-value=8.3e-05 Score=71.22 Aligned_cols=77 Identities=12% Similarity=-0.039 Sum_probs=57.7
Q ss_pred eeEEEEECCCcc-cHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhh---HHHHHHHhCCcEEEEeccchHHHHHHh
Q psy2970 132 LIKYMVDAADTD-KLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD---EKELIDRIMIDFWITLTLLIRWCESFL 207 (329)
Q Consensus 132 ~~~lV~Dvt~~~-S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e---~~~l~~~~~~~~~etSAk~~~~~~~~l 207 (329)
++++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.+..+ ......+.+.+++.+||++....+++.
T Consensus 81 ~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~ 156 (287)
T cd01854 81 QLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGLDELR 156 (287)
T ss_pred EEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccHHHHH
Confidence 333999999987 77877777765533 4689999999999976532 223345578899999999988888877
Q ss_pred hhhcC
Q psy2970 208 HHFGS 212 (329)
Q Consensus 208 ~~i~~ 212 (329)
..+..
T Consensus 157 ~~L~~ 161 (287)
T cd01854 157 EYLKG 161 (287)
T ss_pred hhhcc
Confidence 76653
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00016 Score=66.19 Aligned_cols=46 Identities=15% Similarity=0.031 Sum_probs=33.9
Q ss_pred EEEEEEcCCCCChhh-----HHHHHHHhC--CcEEEEeccchHHHHHHhhhhc
Q psy2970 166 ILVLGNKRDLPNALD-----EKELIDRIM--IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 166 IiLVgNK~Dl~~~~e-----~~~l~~~~~--~~~~etSAk~~~~~~~~l~~i~ 211 (329)
=++|.||.|+....+ ..+=+++.+ .+++++|.++++.++++++.+.
T Consensus 145 DllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~ 197 (202)
T COG0378 145 DLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIE 197 (202)
T ss_pred eEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHH
Confidence 378999999987622 233334443 7899999999999999876554
|
|
| >PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1) | Back alignment and domain information |
|---|
Probab=97.79 E-value=4.3e-05 Score=56.78 Aligned_cols=51 Identities=20% Similarity=0.273 Sum_probs=37.3
Q ss_pred chhhhhhhcceeEEEEECCCc--ccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 122 GPMWLSLLFQLIKYMVDAADT--DKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 122 ~~~~~~~~~~~~~lV~Dvt~~--~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+.-|++|+.++++|++|.+.. -+.++...+++++... +.+.|+++|.||+|
T Consensus 6 ai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~--F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 6 AITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPL--FPNKPVIVVLNKID 58 (58)
T ss_dssp HHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH--TTTS-EEEEE--TT
T ss_pred HHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHH--cCCCCEEEEEeccC
Confidence 345899999999999999875 5678888888888665 56899999999998
|
The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.75 E-value=9.3e-05 Score=73.03 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=36.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCC-CCC---------CCceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 23 LTLVGLQCSGKTTFVNVIASGQFS-QDM---------IPTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~~~~-~~~---------~pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
++++|.+|||||||+|+|.+.... +.. -.|....+..+..+. .++||||...+
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~ 270 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREF 270 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCcc
Confidence 789999999999999999875421 111 134445555554443 48999996654
|
|
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00042 Score=64.09 Aligned_cols=58 Identities=21% Similarity=0.265 Sum_probs=42.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC--CCC---CCCCCceeeeEEEee---CceEEEEEEecCCCccc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG--QFS---QDMIPTVGFNMRKIT---KGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~--~~~---~~~~pTig~~~~~i~---~~~~~l~I~DtpG~e~~ 78 (329)
.-|.++|++++|||+|+|++++. .|. .....|.|+-..... .++..+.+.||+|....
T Consensus 8 ~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~ 73 (224)
T cd01851 8 AVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGR 73 (224)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCcc
Confidence 45889999999999999999998 664 222345555554432 24678999999997644
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0001 Score=72.87 Aligned_cols=58 Identities=16% Similarity=0.273 Sum_probs=37.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCC------CCCCCCceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQF------SQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~------~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
..++.++|.+|||||||+|++.+... .....|.++.....+... -.+.++||||....
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~-~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLD-DGHSLYDTPGIINS 217 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeC-CCCEEEECCCCCCh
Confidence 46999999999999999999987432 222223333333333321 12469999997643
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >KOG1547|consensus | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0005 Score=65.13 Aligned_cols=71 Identities=18% Similarity=0.295 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcCC--CCceEEEEEcCCCCCHHHHHHHHHcCCCC---------CCCCCceeeeEE--EeeCc--eEEEEE
Q psy2970 5 LNRILDWFKSLFW--KEEMELTLVGLQCSGKTTFVNVIASGQFS---------QDMIPTVGFNMR--KITKG--NVTIKV 69 (329)
Q Consensus 5 ~~~~~~~~~~~~~--~k~lkIlllG~~gvGKSSLin~l~~~~~~---------~~~~pTig~~~~--~i~~~--~~~l~I 69 (329)
+..+++.++...- .-+++|+++|.+|.||||++|.++..... ..+..|++.... .+..+ ..++.+
T Consensus 29 idtI~~Qm~~k~mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltv 108 (336)
T KOG1547|consen 29 IDTIIEQMRKKTMKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTV 108 (336)
T ss_pred HHHHHHHHHHHHHhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEE
Confidence 3445555554332 23689999999999999999999764432 123344444332 23333 457889
Q ss_pred EecCCC
Q psy2970 70 WDIGGQ 75 (329)
Q Consensus 70 ~DtpG~ 75 (329)
.||||.
T Consensus 109 iDTPGf 114 (336)
T KOG1547|consen 109 IDTPGF 114 (336)
T ss_pred ecCCCc
Confidence 999995
|
|
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=97.68 E-value=4.3e-05 Score=67.84 Aligned_cols=55 Identities=18% Similarity=0.217 Sum_probs=33.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC-CC---------CCCCceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQF-SQ---------DMIPTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~-~~---------~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
=-++++|.+|||||||+|.+.+..- .+ ..-+|+......++.+ ..+.||||...+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCcc
Confidence 4688999999999999999988632 11 1112223333344333 358999995543
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00012 Score=72.59 Aligned_cols=55 Identities=20% Similarity=0.330 Sum_probs=35.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCC------CCCCCCceeeeEEE--eeCceEEEEEEecCCCcc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQF------SQDMIPTVGFNMRK--ITKGNVTIKVWDIGGQPR 77 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~------~~~~~pTig~~~~~--i~~~~~~l~I~DtpG~e~ 77 (329)
.-++.++|.+|||||||+|++.+... .....|.+...... ++.+ ..++||||...
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~~ 222 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGIIH 222 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCccc
Confidence 45899999999999999999985421 12222333333333 2222 36999999753
|
|
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=97.67 E-value=4.1e-05 Score=72.79 Aligned_cols=89 Identities=11% Similarity=0.095 Sum_probs=55.3
Q ss_pred chhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhh----HHHHHHH-------hCC
Q psy2970 122 GPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD----EKELIDR-------IMI 190 (329)
Q Consensus 122 ~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e----~~~l~~~-------~~~ 190 (329)
+--++....|..++|.-..--+..+.++.-+.++- =++|.||.|.+.++. .+..... +..
T Consensus 135 sE~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia---------Di~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~p 205 (266)
T PF03308_consen 135 SEVDIADMADTVVLVLVPGLGDEIQAIKAGIMEIA---------DIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRP 205 (266)
T ss_dssp HHHHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH----------SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--
T ss_pred cHHHHHHhcCeEEEEecCCCccHHHHHhhhhhhhc---------cEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCC
Confidence 33366777777779988766556666666555652 278899999766532 2222211 125
Q ss_pred cEEEEeccchHHHHHHhhhhcCCCchhhh
Q psy2970 191 DFWITLTLLIRWCESFLHHFGSHPNWAVK 219 (329)
Q Consensus 191 ~~~etSAk~~~~~~~~l~~i~~~~~~~~~ 219 (329)
+.+.|||......+++.+.+..+..+..+
T Consensus 206 pV~~tsA~~~~Gi~eL~~~i~~~~~~l~~ 234 (266)
T PF03308_consen 206 PVLKTSALEGEGIDELWEAIDEHRDYLKE 234 (266)
T ss_dssp EEEEEBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 79999999988888888888765554444
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00024 Score=70.77 Aligned_cols=73 Identities=21% Similarity=0.133 Sum_probs=49.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC-C-CCCCC-ceeeeEEEe--eC---------------ceEEEEEEecCCCccc--
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQF-S-QDMIP-TVGFNMRKI--TK---------------GNVTIKVWDIGGQPRF-- 78 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~-~-~~~~p-Tig~~~~~i--~~---------------~~~~l~I~DtpG~e~~-- 78 (329)
+|+.++|.||||||||+|.+++... . ..|.. |+..+...+ .+ ....+.+.|+||...-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998776 3 22322 233333221 11 1246889999996532
Q ss_pred -----cchHHHHhhccceeE
Q psy2970 79 -----RSMWERYCRGVNAIV 93 (329)
Q Consensus 79 -----~~~~~~~~~~ad~iI 93 (329)
.+..-..++.+|+++
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~ 102 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQ 102 (368)
T ss_pred cccCcchHHHHHHHhCCEEE
Confidence 223445678899999
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0002 Score=70.11 Aligned_cols=151 Identities=15% Similarity=0.136 Sum_probs=87.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC---CCCCCCC--CceeeeEE-----E---------------e-----e-CceEE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG---QFSQDMI--PTVGFNMR-----K---------------I-----T-KGNVT 66 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~---~~~~~~~--pTig~~~~-----~---------------i-----~-~~~~~ 66 (329)
..+++|-++|.-.-|||||++++.+- .+++... -|+...|. + - + .---.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 45899999999999999999999762 2211111 11111110 0 0 0 11125
Q ss_pred EEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHH
Q psy2970 67 IKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLE 146 (329)
Q Consensus 67 l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~ 146 (329)
+.+.|.||+|-.-..--+-..-.|+.+ +|+++..+-.-.
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAl-----------------------------------------LvIaANEpcPQP 126 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGAL-----------------------------------------LVIAANEPCPQP 126 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceE-----------------------------------------EEEecCCCCCCC
Confidence 788999997743221111111234444 999987642222
Q ss_pred HHHHHHH--HHHhCCcCCCCcEEEEEEcCCCCChhhHHHHH---HHh-------CCcEEEEeccchHHHHHHhhhhcCCC
Q psy2970 147 ASRNELH--ALIEKPQLIGIPILVLGNKRDLPNALDEKELI---DRI-------MIDFWITLTLLIRWCESFLHHFGSHP 214 (329)
Q Consensus 147 ~~~~~l~--~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~~l~---~~~-------~~~~~etSAk~~~~~~~~l~~i~~~~ 214 (329)
..++-+. +++.. .-+++|-||+|+...+++.+-- ++| +.|.+.+||...-+.+.+++.+...+
T Consensus 127 QT~EHl~AleIigi-----k~iiIvQNKIDlV~~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I 201 (415)
T COG5257 127 QTREHLMALEIIGI-----KNIIIVQNKIDLVSRERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYI 201 (415)
T ss_pred chHHHHHHHhhhcc-----ceEEEEecccceecHHHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhC
Confidence 2222222 23221 2488999999999875433322 222 36899999999888888888776543
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00026 Score=60.14 Aligned_cols=63 Identities=19% Similarity=0.048 Sum_probs=42.5
Q ss_pred EEEECCCcccHH--HHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhHH---HHHHHhCCcEEEEeccchHH
Q psy2970 135 YMVDAADTDKLE--ASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEK---ELIDRIMIDFWITLTLLIRW 202 (329)
Q Consensus 135 lV~Dvt~~~S~~--~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~---~l~~~~~~~~~etSAk~~~~ 202 (329)
+|+|+.++.+.. .+..++.+. ..+.|+++|+||+|+.++.+.. +..++.+.+++.+||++...
T Consensus 17 ~ViD~~~p~~~~~~~l~~~l~~~-----~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~~~ 84 (141)
T cd01857 17 QIVDARNPLLFRPPDLERYVKEV-----DPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKENA 84 (141)
T ss_pred EEEEccCCcccCCHHHHHHHHhc-----cCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCCCc
Confidence 999998876533 333333322 1468999999999997654433 33445567899999998543
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >KOG3887|consensus | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00029 Score=66.73 Aligned_cols=148 Identities=25% Similarity=0.341 Sum_probs=92.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCC---CCceeeeEEEeeCceEEEEEEecCCCccccc---hHHHHhhccceeEe
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDM---IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS---MWERYCRGVNAIVW 94 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~---~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~---~~~~~~~~ad~iI~ 94 (329)
-.|++.|...+||||+-+-.+....+... .+|-......+...-+.+++||.|||-++-. -....++++.+.+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi- 106 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI- 106 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE-
Confidence 35999999999999988876654432110 0111111112334556799999999987643 2366788889999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC--cCCCCcEEEEEEc
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP--QLIGIPILVLGNK 172 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~--~~~~iPIiLVgNK 172 (329)
+|+|..+. +.+...-+....... -.+++.+-|+..|
T Consensus 107 ----------------------------------------fvIDaQdd--y~eala~L~~~v~raykvNp~in~EVfiHK 144 (347)
T KOG3887|consen 107 ----------------------------------------FVIDAQDD--YMEALARLHMTVERAYKVNPNINFEVFIHK 144 (347)
T ss_pred ----------------------------------------EEEechHH--HHHHHHHHHHHhhheeecCCCceEEEEEEe
Confidence 99998752 223222333333322 2467888999999
Q ss_pred CCCCCh------------hhHHHHHHHh----CCcEEEEeccchHHHHHHhhhhc
Q psy2970 173 RDLPNA------------LDEKELIDRI----MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 173 ~Dl~~~------------~e~~~l~~~~----~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.|--.+ +..+++++.. .+.|..||-..-.+.|+|-.-++
T Consensus 145 vDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSIyDHSIfEAFSkvVQ 199 (347)
T KOG3887|consen 145 VDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSIYDHSIFEAFSKVVQ 199 (347)
T ss_pred ccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeeecchHHHHHHHHHHH
Confidence 996443 1123333322 24688899998888888776554
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00032 Score=60.49 Aligned_cols=74 Identities=12% Similarity=-0.001 Sum_probs=45.8
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhHHHHHHHhC----CcEEEEeccchHHHHHHhhhh
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRIM----IDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~~l~~~~~----~~~~etSAk~~~~~~~~l~~i 210 (329)
+|+|+.++..- ....+.+.+... ..+.|+++|.||+|+.++.+...+.+.+. ...+.+||+.....+.+++.+
T Consensus 14 ~VvD~~~p~~~--~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~L~~~l 90 (157)
T cd01858 14 QVLDARDPMGT--RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPFGKGSLIQLL 90 (157)
T ss_pred EEEECCCCccc--cCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccccHHHHHHHH
Confidence 99999886321 112222222221 34589999999999977655444444442 224678999877777766655
Q ss_pred c
Q psy2970 211 G 211 (329)
Q Consensus 211 ~ 211 (329)
.
T Consensus 91 ~ 91 (157)
T cd01858 91 R 91 (157)
T ss_pred H
Confidence 4
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00015 Score=68.01 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=36.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC------CC----CCCCceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQF------SQ----DMIPTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~------~~----~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
-.++++|.+|||||||+|++.+..- .. ..-.|.......+. +. .++||||...+
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~-~~---~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFH-GG---LIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcC-Cc---EEEeCCCcccc
Confidence 3688999999999999999987432 11 11134444444442 22 69999996543
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00015 Score=71.74 Aligned_cols=89 Identities=21% Similarity=0.244 Sum_probs=60.8
Q ss_pred CccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHH
Q psy2970 75 QPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHA 154 (329)
Q Consensus 75 ~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~ 154 (329)
+++|..+...+.+.++.++ +|+|+.+... .|..+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il-----------------------------------------~VvD~~d~~~-----s~~~~ 83 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIV-----------------------------------------YVVDIFDFEG-----SLIPE 83 (360)
T ss_pred HHHHHHHHhhcccCCcEEE-----------------------------------------EEEECcCCCC-----CccHH
Confidence 5677777777778888888 9999987542 12222
Q ss_pred HHhCCcCCCCcEEEEEEcCCCCCh----hhHH----HHHHHhCC---cEEEEeccchHHHHHHhhhhc
Q psy2970 155 LIEKPQLIGIPILVLGNKRDLPNA----LDEK----ELIDRIMI---DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 155 i~~~~~~~~iPIiLVgNK~Dl~~~----~e~~----~l~~~~~~---~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.+. ..+.|+++|+||+|+... .+.. +++++.++ .++++||+++.+.++++..+.
T Consensus 84 l~~~--~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~ 149 (360)
T TIGR03597 84 LKRF--VGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIK 149 (360)
T ss_pred HHHH--hCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHH
Confidence 2222 125799999999998643 2233 34566776 489999999777777776653
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0007 Score=65.76 Aligned_cols=136 Identities=20% Similarity=0.315 Sum_probs=83.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHc---C----C---C------CCCCCCceeeeEE--EeeCceEEEEEEecCCCccc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIAS---G----Q---F------SQDMIPTVGFNMR--KITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~---~----~---~------~~~~~pTig~~~~--~i~~~~~~l~I~DtpG~e~~ 78 (329)
.+..++|..+|--+-|||||..+++. . . + +......+.++.. .+...+-.+...|.||+.+|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence 46679999999999999999999864 1 1 1 1111122222222 23445566778999999887
Q ss_pred c-chHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHh
Q psy2970 79 R-SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIE 157 (329)
Q Consensus 79 ~-~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~ 157 (329)
- ++.- -....|+.| +|+.++|-.-- ..++-+ ++.
T Consensus 89 vKNMIt-gAaqmDgAI-----------------------------------------LVVsA~dGpmP-qTrEHi--Lla 123 (394)
T COG0050 89 VKNMIT-GAAQMDGAI-----------------------------------------LVVAATDGPMP-QTREHI--LLA 123 (394)
T ss_pred HHHHhh-hHHhcCccE-----------------------------------------EEEEcCCCCCC-cchhhh--hhh
Confidence 3 3332 334578888 89988873211 111111 111
Q ss_pred CCcCCCCc-EEEEEEcCCCCCh--------hhHHHHHHHhCC-----cEEEEeccc
Q psy2970 158 KPQLIGIP-ILVLGNKRDLPNA--------LDEKELIDRIMI-----DFWITLTLL 199 (329)
Q Consensus 158 ~~~~~~iP-IiLVgNK~Dl~~~--------~e~~~l~~~~~~-----~~~etSAk~ 199 (329)
+ .-++| ++++.||+|+.+. .+..++..+++. |.+.-||..
T Consensus 124 r--qvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ 177 (394)
T COG0050 124 R--QVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGDDTPIIRGSALK 177 (394)
T ss_pred h--hcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhh
Confidence 1 24565 6778999999874 245566777764 466666655
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00033 Score=60.40 Aligned_cols=76 Identities=18% Similarity=0.083 Sum_probs=50.8
Q ss_pred ceeEEEEECCCcccHHHHHHHHH-HHHhCCcCCCCcEEEEEEcCCCCChhhHHH----HHHHhCCcEEEEeccchHHHHH
Q psy2970 131 QLIKYMVDAADTDKLEASRNELH-ALIEKPQLIGIPILVLGNKRDLPNALDEKE----LIDRIMIDFWITLTLLIRWCES 205 (329)
Q Consensus 131 ~~~~lV~Dvt~~~S~~~~~~~l~-~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~~----l~~~~~~~~~etSAk~~~~~~~ 205 (329)
|++++|+|+.++.+.+.. ++. .... ..++|+++|+||+|+.+..+..+ +.+..+.+.+.+||+++...++
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~---~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~ 75 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIERVLIK---EKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEK 75 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHHHHHh---cCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhh
Confidence 457799999887654322 222 2222 25689999999999976644333 3333356689999999777777
Q ss_pred Hhhhhc
Q psy2970 206 FLHHFG 211 (329)
Q Consensus 206 ~l~~i~ 211 (329)
+.+.+.
T Consensus 76 L~~~i~ 81 (155)
T cd01849 76 KESAFT 81 (155)
T ss_pred HHHHHH
Confidence 776653
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >KOG1491|consensus | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00036 Score=68.69 Aligned_cols=76 Identities=25% Similarity=0.363 Sum_probs=51.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCC--CceeeeEEEe-----------------eCceEEEEEEecCCCccc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMI--PTVGFNMRKI-----------------TKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~--pTig~~~~~i-----------------~~~~~~l~I~DtpG~e~~ 78 (329)
...+++-+||.||||||||+|.+++....+..- .|++.+..++ ......++++|++|.-+-
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 356899999999999999999999876543222 3555443321 122356899999996543
Q ss_pred -------cchHHHHhhccceeE
Q psy2970 79 -------RSMWERYCRGVNAIV 93 (329)
Q Consensus 79 -------~~~~~~~~~~ad~iI 93 (329)
.+..-+.++++|+++
T Consensus 98 As~G~GLGN~FLs~iR~vDaif 119 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIF 119 (391)
T ss_pred cccCcCchHHHHHhhhhcccee
Confidence 223344577899988
|
|
| >KOG2486|consensus | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00025 Score=68.13 Aligned_cols=115 Identities=17% Similarity=0.179 Sum_probs=68.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCC-----CCCCceeeeEEEeeCceEEEEEEecCC----------CccccchH
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQ-----DMIPTVGFNMRKITKGNVTIKVWDIGG----------QPRFRSMW 82 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~-----~~~pTig~~~~~i~~~~~~l~I~DtpG----------~e~~~~~~ 82 (329)
.++..++++|.+|||||+|+|.++..+... ....|-..+...+ +-.+.+.|.|| .+++..+.
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v---~~~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV---GKSWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec---cceEEEEecCCcccccCCccCcchHhHhH
Confidence 456899999999999999999998755421 2222322333222 33567889999 23444555
Q ss_pred HHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCC
Q psy2970 83 ERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLI 162 (329)
Q Consensus 83 ~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~ 162 (329)
..|+.+-+-.+ .+++.+|++-+ +........+.+. ..
T Consensus 211 ~~Y~leR~nLv--------------------------------------~~FLLvd~sv~--i~~~D~~~i~~~g---e~ 247 (320)
T KOG2486|consen 211 KSYLLERENLV--------------------------------------RVFLLVDASVP--IQPTDNPEIAWLG---EN 247 (320)
T ss_pred HHHHHhhhhhh--------------------------------------eeeeeeeccCC--CCCCChHHHHHHh---hc
Confidence 66665544433 11255665532 1111122222222 25
Q ss_pred CCcEEEEEEcCCCCCh
Q psy2970 163 GIPILVLGNKRDLPNA 178 (329)
Q Consensus 163 ~iPIiLVgNK~Dl~~~ 178 (329)
++|..+|.||||....
T Consensus 248 ~VP~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 248 NVPMTSVFTKCDKQKK 263 (320)
T ss_pred CCCeEEeeehhhhhhh
Confidence 7999999999998654
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0002 Score=70.90 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=35.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC-CCCC---------CceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFS-QDMI---------PTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~-~~~~---------pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
-++|+|.+|||||||+|+|.++.-. .... .|.......+..+. .+.||||...+
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccc
Confidence 3899999999999999999865321 1111 23334444443333 58999996544
|
|
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00072 Score=65.63 Aligned_cols=88 Identities=13% Similarity=0.061 Sum_probs=58.3
Q ss_pred hhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhh-HHHHHHH------------hCCc
Q psy2970 125 WLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD-EKELIDR------------IMID 191 (329)
Q Consensus 125 ~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e-~~~l~~~------------~~~~ 191 (329)
++....|+.+++.=..--+..+.++.-+.++- =++|.||.|....+. ..++... +.-+
T Consensus 160 ~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia---------Di~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~pp 230 (323)
T COG1703 160 DIANMADTFLVVMIPGAGDDLQGIKAGIMEIA---------DIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPP 230 (323)
T ss_pred HHhhhcceEEEEecCCCCcHHHHHHhhhhhhh---------heeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCc
Confidence 56666677667776554455566665555552 278899999876522 1111111 2247
Q ss_pred EEEEeccchHHHHHHhhhhcCCCchhhhcC
Q psy2970 192 FWITLTLLIRWCESFLHHFGSHPNWAVKWH 221 (329)
Q Consensus 192 ~~etSAk~~~~~~~~l~~i~~~~~~~~~~~ 221 (329)
.+.|||..++...++.+.+..+.++..+..
T Consensus 231 v~~t~A~~g~Gi~~L~~ai~~h~~~~~~sg 260 (323)
T COG1703 231 VVTTSALEGEGIDELWDAIEDHRKFLTESG 260 (323)
T ss_pred eeEeeeccCCCHHHHHHHHHHHHHHHHhcc
Confidence 899999999999999999987776665543
|
|
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00054 Score=59.84 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~ 43 (329)
++++|..|+|||||++++...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 579999999999999999865
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.001 Score=65.70 Aligned_cols=79 Identities=16% Similarity=0.063 Sum_probs=58.7
Q ss_pred cceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhh---HH---HHHHHhCCcEEEEeccchHHH
Q psy2970 130 FQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD---EK---ELIDRIMIDFWITLTLLIRWC 203 (329)
Q Consensus 130 ~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e---~~---~l~~~~~~~~~etSAk~~~~~ 203 (329)
.+.+++|++++...++..+..|+.... ..++|++||+||+|+.+..+ .+ +..+.++++++++||++....
T Consensus 121 vD~vlIV~s~~p~~s~~~Ldr~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~Gi 196 (347)
T PRK12288 121 IDQIVIVSAVLPELSLNIIDRYLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEGL 196 (347)
T ss_pred ccEEEEEEeCCCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcCH
Confidence 455569999988788888888876442 35689999999999976432 22 233456789999999997778
Q ss_pred HHHhhhhcC
Q psy2970 204 ESFLHHFGS 212 (329)
Q Consensus 204 ~~~l~~i~~ 212 (329)
+++.+.+..
T Consensus 197 deL~~~L~~ 205 (347)
T PRK12288 197 EELEAALTG 205 (347)
T ss_pred HHHHHHHhh
Confidence 887777654
|
|
| >KOG0448|consensus | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0033 Score=66.58 Aligned_cols=45 Identities=18% Similarity=0.337 Sum_probs=33.0
Q ss_pred HHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcee
Q psy2970 10 DWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVG 54 (329)
Q Consensus 10 ~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig 54 (329)
+-+.+.+.+..+||++.|+.+.||||++|++...+.. .+..+|+.
T Consensus 99 ~~i~~~l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~Tn 144 (749)
T KOG0448|consen 99 DAIDEVLARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTN 144 (749)
T ss_pred HHHHHHHhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccce
Confidence 3344455677899999999999999999999876653 33334433
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0011 Score=64.72 Aligned_cols=57 Identities=16% Similarity=-0.011 Sum_probs=34.1
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh-hhHHHHHHHhCCcEEEEecc
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-LDEKELIDRIMIDFWITLTL 198 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~-~e~~~l~~~~~~~~~etSAk 198 (329)
+|+|++... +.+.. .....+. . -+--+|.||.|.... -.+-+++.+.++|+..++.-
T Consensus 238 LVl~a~~g~--~~~~~-a~~f~~~---~-~~~giIlTKlD~t~~~G~~l~~~~~~~~Pi~~v~~G 295 (318)
T PRK10416 238 LVLDATTGQ--NALSQ-AKAFHEA---V-GLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVG 295 (318)
T ss_pred EEEECCCCh--HHHHH-HHHHHhh---C-CCCEEEEECCCCCCCccHHHHHHHHHCCCEEEEeCC
Confidence 999988432 22222 2222111 1 234688999996544 34556778889998888743
|
|
| >KOG1144|consensus | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00027 Score=75.22 Aligned_cols=229 Identities=17% Similarity=0.170 Sum_probs=130.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCC----CCCceeeeEEEe-------------eCceE---EEEEEecCCCccccc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQD----MIPTVGFNMRKI-------------TKGNV---TIKVWDIGGQPRFRS 80 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~----~~pTig~~~~~i-------------~~~~~---~l~I~DtpG~e~~~~ 80 (329)
.=++++|.-.+|||-|+..+-+.++... ..+.+|-.|... ....+ -+.++||||++.|.+
T Consensus 476 PIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtn 555 (1064)
T KOG1144|consen 476 PICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTN 555 (1064)
T ss_pred ceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhh
Confidence 3478999999999999999987554321 223344444321 11112 267899999999999
Q ss_pred hHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCC---cccHHHHHHHHHHHHh
Q psy2970 81 MWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAAD---TDKLEASRNELHALIE 157 (329)
Q Consensus 81 ~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~---~~S~~~~~~~l~~i~~ 157 (329)
++...-.-||..| +|+|+.. +.+.+.+. +++
T Consensus 556 lRsrgsslC~~aI-----------------------------------------lvvdImhGlepqtiESi~-----lLR 589 (1064)
T KOG1144|consen 556 LRSRGSSLCDLAI-----------------------------------------LVVDIMHGLEPQTIESIN-----LLR 589 (1064)
T ss_pred hhhccccccceEE-----------------------------------------EEeehhccCCcchhHHHH-----HHH
Confidence 9988888888888 9999874 34433332 222
Q ss_pred CCcCCCCcEEEEEEcCCCCC-------h-----------h-------hHHHHHHHh---C---------------CcEEE
Q psy2970 158 KPQLIGIPILVLGNKRDLPN-------A-----------L-------DEKELIDRI---M---------------IDFWI 194 (329)
Q Consensus 158 ~~~~~~iPIiLVgNK~Dl~~-------~-----------~-------e~~~l~~~~---~---------------~~~~e 194 (329)
..++|++|.+||+|.-- . . .+..+..+| | +.++.
T Consensus 590 ---~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVP 666 (1064)
T KOG1144|consen 590 ---MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVP 666 (1064)
T ss_pred ---hcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeee
Confidence 25799999999999621 1 0 111111111 1 23566
Q ss_pred EeccchHHHHHHhhhhcCCCchhhhcCCcchhhhhhhhhccccCCCCCccccccceeehhhh-eeeeeeeeceeeeeeee
Q psy2970 195 TLTLLIRWCESFLHHFGSHPNWAVKWHTLPKLLFLSLVDSYVSSGASDYTEEAGCTISILML-SWYSVTVRQHWSYIIMY 273 (329)
Q Consensus 195 tSAk~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~g~~i~~~~~-~~~~~~~~~~~~~~~~~ 273 (329)
|||.++.+.-.++-.+ +.|.+ .+. +....|-.+..|||.-... .-+-.|.+-.-+--.+-
T Consensus 667 TSA~sGeGipdLl~ll-------v~ltQ-----------k~m-~~kl~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~ 727 (1064)
T KOG1144|consen 667 TSAISGEGIPDLLLLL-------VQLTQ-----------KTM-VEKLAYVDEVQCTVLEVKVIEGHGTTIDVILVNGELH 727 (1064)
T ss_pred cccccCCCcHHHHHHH-------HHHHH-----------HHH-HHHHhhhhheeeEEEEEEeecCCCceEEEEEEcceec
Confidence 7777765555544322 11111 011 1122355667777665432 22333333222211111
Q ss_pred hhcCceeeeeeccceeecccccccceecCccCcchhhhccccceeeee
Q psy2970 274 IVHKPLAYRLECNMSRVSTTTHSSCTYFSPFQNHKVLCNQMHHLTLKT 321 (329)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (329)
+- ---.-|||--.-+||--.--.--|...-.|--..+||-.+|.
T Consensus 728 eG----D~IvvcG~~GpIvTtIRaLLtP~PlkElRVk~~Y~hhkEvka 771 (1064)
T KOG1144|consen 728 EG----DQIVVCGLQGPIVTTIRALLTPQPLKELRVKGTYVHHKEVKA 771 (1064)
T ss_pred cC----CEEEEcCCCCchhHHHHHhcCCcchHhhccccceeehhHhhh
Confidence 10 112458888777776655555567777777778888866553
|
|
| >PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0013 Score=58.43 Aligned_cols=47 Identities=28% Similarity=0.272 Sum_probs=29.7
Q ss_pred hhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChh
Q psy2970 127 SLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNAL 179 (329)
Q Consensus 127 ~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~ 179 (329)
....+.++.|+|..+..........+.+-++.. + +|+.||+|+.+.+
T Consensus 111 ~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A---D---vIvlnK~D~~~~~ 157 (178)
T PF02492_consen 111 DFRLDSIITVVDATNFDELENIPELLREQIAFA---D---VIVLNKIDLVSDE 157 (178)
T ss_dssp HESESEEEEEEEGTTHGGHTTHCHHHHHHHCT----S---EEEEE-GGGHHHH
T ss_pred cccccceeEEeccccccccccchhhhhhcchhc---C---EEEEeccccCChh
Confidence 344677889999977544444445555444432 2 6889999998765
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B. |
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00078 Score=76.02 Aligned_cols=109 Identities=25% Similarity=0.286 Sum_probs=64.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCC--C--CC--ceeeeEEE---eeCceEEEEEEecCCCc--------cccchHHHH
Q psy2970 23 LTLVGLQCSGKTTFVNVIASGQFSQD--M--IP--TVGFNMRK---ITKGNVTIKVWDIGGQP--------RFRSMWERY 85 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~~~~~~--~--~p--Tig~~~~~---i~~~~~~l~I~DtpG~e--------~~~~~~~~~ 85 (329)
.+|+|++|+||||++++. +-+++-. . .. +++..-.. +..+ -.++||+|.. .....|..+
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~---avliDtaG~y~~~~~~~~~~~~~W~~f 189 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDE---AVLIDTAGRYTTQDSDPEEDAAAWLGF 189 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCC---EEEEcCCCccccCCCcccccHHHHHHH
Confidence 689999999999999987 4444311 0 01 11111000 1222 3489999932 122345444
Q ss_pred h---------hccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc-----cH----HH
Q psy2970 86 C---------RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD-----KL----EA 147 (329)
Q Consensus 86 ~---------~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~-----S~----~~ 147 (329)
+ +..||+| +++|+.+.- .. ..
T Consensus 190 L~~L~k~R~r~plnGvi-----------------------------------------l~vs~~~Ll~~~~~~~~~~a~~ 228 (1169)
T TIGR03348 190 LGLLRKHRRRQPLNGVV-----------------------------------------VTVSLADLLTADPAERKAHARA 228 (1169)
T ss_pred HHHHHHhCCCCCCCeEE-----------------------------------------EEEEHHHHhCCCHHHHHHHHHH
Confidence 3 2478888 888886531 11 23
Q ss_pred HHHHHHHHHhCCcCCCCcEEEEEEcCCCCC
Q psy2970 148 SRNELHALIEKPQLIGIPILVLGNKRDLPN 177 (329)
Q Consensus 148 ~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~ 177 (329)
++..+.++.+.. ....||.||.+|+|+..
T Consensus 229 lR~rl~el~~~l-g~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 229 IRQRLQELREQL-GARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHHHHHh-CCCCCEEEEEecchhhc
Confidence 344455554443 36899999999999874
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00054 Score=66.44 Aligned_cols=54 Identities=20% Similarity=0.264 Sum_probs=36.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC------CC----CCCCCceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ------FS----QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~------~~----~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
-.+++|.+|||||||+|++..+. ++ ...-+|+......++.+. .|.||||...+
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~ 229 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSL 229 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCcc
Confidence 67889999999999999997622 21 122244445555554444 38899996544
|
|
| >cd03110 Fer4_NifH_child This protein family's function is unkown | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.012 Score=51.45 Aligned_cols=55 Identities=18% Similarity=0.232 Sum_probs=37.5
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh--hhHHHHHHHhCCcEEE
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--LDEKELIDRIMIDFWI 194 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~--~e~~~l~~~~~~~~~e 194 (329)
+++..+ ..+.......++.+.+ .+.|+.+|.||.|.... .+.+++.++++++++-
T Consensus 120 iv~~~~-~~~~~~~~~~~~~l~~----~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~vl~ 176 (179)
T cd03110 120 LVTEPT-PSGLHDLERAVELVRH----FGIPVGVVINKYDLNDEIAEEIEDYCEEEGIPILG 176 (179)
T ss_pred EEecCC-cccHHHHHHHHHHHHH----cCCCEEEEEeCCCCCcchHHHHHHHHHHcCCCeEE
Confidence 888876 3455566665554432 35678999999998654 4567778888887653
|
It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion. |
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.002 Score=64.54 Aligned_cols=29 Identities=28% Similarity=0.491 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS 46 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~ 46 (329)
+..+.+...|.-+.|||||+-.+..++..
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~D 143 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLD 143 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCC
Confidence 45688999999999999999998765543
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00081 Score=64.42 Aligned_cols=55 Identities=22% Similarity=0.222 Sum_probs=35.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCC-C---------CCCceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQ-D---------MIPTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~-~---------~~pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
-.++++|++|||||||+|.+.+..... . ...|.......+.... .++||||...+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCC---EEEECCCCCcc
Confidence 579999999999999999998754321 1 0122223333333222 58999998654
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0046 Score=61.86 Aligned_cols=63 Identities=13% Similarity=0.047 Sum_probs=36.4
Q ss_pred EEEECCC-cccHHHHHHHHHHHHhCCcCCCC-cEEEEEEcCCCCCh-hhHHHHHHHhCCcEEEEec
Q psy2970 135 YMVDAAD-TDKLEASRNELHALIEKPQLIGI-PILVLGNKRDLPNA-LDEKELIDRIMIDFWITLT 197 (329)
Q Consensus 135 lV~Dvt~-~~S~~~~~~~l~~i~~~~~~~~i-PIiLVgNK~Dl~~~-~e~~~l~~~~~~~~~etSA 197 (329)
+|++.+. .+.+......+......+...-. +-=++.+|.|-... -.+-.+..+.++|+..++.
T Consensus 251 LVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~~G~~l~~~~~~~lPi~yvt~ 316 (374)
T PRK14722 251 LLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVST 316 (374)
T ss_pred EEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCCccHHHHHHHHHCcCeEEEec
Confidence 8999875 34455555555554322111001 23567899998765 3456677777877655543
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0059 Score=62.10 Aligned_cols=22 Identities=45% Similarity=0.536 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIA 41 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~ 41 (329)
.--|+++|.+||||||++..+.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA 121 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLA 121 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999999985
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.002 Score=61.53 Aligned_cols=56 Identities=11% Similarity=-0.060 Sum_probs=33.8
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh-hhHHHHHHHhCCcEEEEec
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-LDEKELIDRIMIDFWITLT 197 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~-~e~~~l~~~~~~~~~etSA 197 (329)
+|+|.+... +.+ .......+.. -+--++.||.|.... -.+-++....+.|...++.
T Consensus 196 LVl~a~~~~--~~~-~~~~~f~~~~----~~~g~IlTKlDe~~~~G~~l~~~~~~~~Pi~~~~~ 252 (272)
T TIGR00064 196 LVLDATTGQ--NAL-EQAKVFNEAV----GLTGIILTKLDGTAKGGIILSIAYELKLPIKFIGV 252 (272)
T ss_pred EEEECCCCH--HHH-HHHHHHHhhC----CCCEEEEEccCCCCCccHHHHHHHHHCcCEEEEeC
Confidence 999987431 222 2223332211 134688999998665 3455667788888877763
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0016 Score=57.05 Aligned_cols=70 Identities=14% Similarity=0.006 Sum_probs=44.9
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhHHHHH---HHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELI---DRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~~l~---~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+|+.++..-... ..+..+ .+.|+++|.||+|+.++.+..++. +..+..++.+||++....+++...+.
T Consensus 25 ~v~D~~~~~~~~~~-~i~~~~------~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~l~ 97 (171)
T cd01856 25 EVRDARIPLSSRNP-LLEKIL------GNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNAKSGKGVKKLLKAAK 97 (171)
T ss_pred EEeeccCccCcCCh-hhHhHh------cCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEECCCcccHHHHHHHHH
Confidence 99999876432111 111111 346899999999997654333332 23345689999999877777776654
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0016 Score=56.92 Aligned_cols=54 Identities=19% Similarity=0.030 Sum_probs=31.7
Q ss_pred EEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh-hhHHHHHHHhCCcEEE
Q psy2970 134 KYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-LDEKELIDRIMIDFWI 194 (329)
Q Consensus 134 ~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~-~e~~~l~~~~~~~~~e 194 (329)
++|+|..... ...+...+..+. .+ ..-+|.||.|.... -..-+++...++|+..
T Consensus 117 ~lVv~~~~~~---~~~~~~~~~~~~---~~-~~~viltk~D~~~~~g~~~~~~~~~~~p~~~ 171 (173)
T cd03115 117 LLVVDAMTGQ---DAVNQAKAFNEA---LG-ITGVILTKLDGDARGGAALSIRAVTGKPIKF 171 (173)
T ss_pred EEEEECCCCh---HHHHHHHHHHhh---CC-CCEEEEECCcCCCCcchhhhhHHHHCcCeEe
Confidence 3999986433 233344444332 12 25677799998765 3344477777777543
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0011 Score=63.92 Aligned_cols=54 Identities=20% Similarity=0.183 Sum_probs=34.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-CCC---------CCceeeeEEEeeCceEEEEEEecCCCcc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS-QDM---------IPTVGFNMRKITKGNVTIKVWDIGGQPR 77 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~-~~~---------~pTig~~~~~i~~~~~~l~I~DtpG~e~ 77 (329)
-.++++|.+|||||||+|.+.+.... ... ..|.......++.. ..+.||||...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~ 228 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS 228 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence 46899999999999999999875422 111 12222333233322 26899999653
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0063 Score=53.36 Aligned_cols=22 Identities=41% Similarity=0.504 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
++|++.|++|+|||||++.+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999754
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0041 Score=56.59 Aligned_cols=55 Identities=16% Similarity=0.003 Sum_probs=32.5
Q ss_pred EEEECCCcc-cHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh-hhHHHHHHHhCCcEEEEec
Q psy2970 135 YMVDAADTD-KLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-LDEKELIDRIMIDFWITLT 197 (329)
Q Consensus 135 lV~Dvt~~~-S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~-~e~~~l~~~~~~~~~etSA 197 (329)
+|.|.+... .++.... ..+. .+ +--++.+|.|.... -.+-.++.+.+.|.-.++.
T Consensus 119 LVlsa~~~~~~~~~~~~----~~~~---~~-~~~lIlTKlDet~~~G~~l~~~~~~~~Pi~~it~ 175 (196)
T PF00448_consen 119 LVLSATMGQEDLEQALA----FYEA---FG-IDGLILTKLDETARLGALLSLAYESGLPISYITT 175 (196)
T ss_dssp EEEEGGGGGHHHHHHHH----HHHH---SS-TCEEEEESTTSSSTTHHHHHHHHHHTSEEEEEES
T ss_pred EEEecccChHHHHHHHH----Hhhc---cc-CceEEEEeecCCCCcccceeHHHHhCCCeEEEEC
Confidence 899987543 2222222 2121 11 12467999998765 4566777888888666553
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0022 Score=63.27 Aligned_cols=31 Identities=13% Similarity=-0.198 Sum_probs=22.7
Q ss_pred EEEEEEcCCCCCh-hhHHHHHHHhCCcEEEEe
Q psy2970 166 ILVLGNKRDLPNA-LDEKELIDRIMIDFWITL 196 (329)
Q Consensus 166 IiLVgNK~Dl~~~-~e~~~l~~~~~~~~~etS 196 (329)
--++.||.|.... -.+-.++...+.|+..++
T Consensus 282 ~giIlTKlD~~~~~G~~ls~~~~~~~Pi~~i~ 313 (336)
T PRK14974 282 DGVILTKVDADAKGGAALSIAYVIGKPILFLG 313 (336)
T ss_pred CEEEEeeecCCCCccHHHHHHHHHCcCEEEEe
Confidence 3678999998765 345566677888987776
|
|
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0028 Score=66.15 Aligned_cols=130 Identities=14% Similarity=0.192 Sum_probs=77.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeeccee
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLY 99 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~ 99 (329)
.+=++++|+||.||||||+.+....-. .....+.-.+.-+.++.-++.+...|. +.+++.
T Consensus 69 PfIvavvGPpGtGKsTLirSlVrr~tk-~ti~~i~GPiTvvsgK~RRiTflEcp~--Dl~~mi----------------- 128 (1077)
T COG5192 69 PFIVAVVGPPGTGKSTLIRSLVRRFTK-QTIDEIRGPITVVSGKTRRITFLECPS--DLHQMI----------------- 128 (1077)
T ss_pred CeEEEeecCCCCChhHHHHHHHHHHHH-hhhhccCCceEEeecceeEEEEEeChH--HHHHHH-----------------
Confidence 467789999999999999998764321 111111111223457778889998883 333332
Q ss_pred eehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCc-EEEEEEcCCCCCh
Q psy2970 100 IVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIP-ILVLGNKRDLPNA 178 (329)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iP-IiLVgNK~Dl~~~ 178 (329)
.++++.+++++.+|...- |+--...+..++.. .+.| |+-|++..|+-..
T Consensus 129 -------------------------DvaKIaDLVlLlIdgnfG--fEMETmEFLnil~~---HGmPrvlgV~ThlDlfk~ 178 (1077)
T COG5192 129 -------------------------DVAKIADLVLLLIDGNFG--FEMETMEFLNILIS---HGMPRVLGVVTHLDLFKN 178 (1077)
T ss_pred -------------------------hHHHhhheeEEEeccccC--ceehHHHHHHHHhh---cCCCceEEEEeecccccC
Confidence 234556666699998653 33223334444443 3455 6669999999764
Q ss_pred -hhHHHHHHHh----------CCcEEEEeccc
Q psy2970 179 -LDEKELIDRI----------MIDFWITLTLL 199 (329)
Q Consensus 179 -~e~~~l~~~~----------~~~~~etSAk~ 199 (329)
..+.+..+++ |..+|..|-..
T Consensus 179 ~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 179 PSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred hHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 3333333322 46777777655
|
|
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.006 Score=59.60 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~ 43 (329)
.++.|.-|+|||||+|++...
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 7 TLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 456799999999999999864
|
|
| >COG0523 Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.014 Score=57.38 Aligned_cols=67 Identities=16% Similarity=0.055 Sum_probs=38.5
Q ss_pred cceeEEEEECCCcccH-HHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhHH---HHHHHhC--CcEEEEeccchHH
Q psy2970 130 FQLIKYMVDAADTDKL-EASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEK---ELIDRIM--IDFWITLTLLIRW 202 (329)
Q Consensus 130 ~~~~~lV~Dvt~~~S~-~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~---~l~~~~~--~~~~etSAk~~~~ 202 (329)
.+.++-|+|+.+-..- ....+.+.+=+.. .+ +||+||.|+.++.+.+ +..++++ .+.+.++......
T Consensus 117 ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~---AD---~ivlNK~Dlv~~~~l~~l~~~l~~lnp~A~i~~~~~~~~~~ 189 (323)
T COG0523 117 LDGVVTVVDAAHFLEGLDAIAELAEDQLAF---AD---VIVLNKTDLVDAEELEALEARLRKLNPRARIIETSYGDVDL 189 (323)
T ss_pred eceEEEEEeHHHhhhhHHHHHHHHHHHHHh---Cc---EEEEecccCCCHHHHHHHHHHHHHhCCCCeEEEccccCCCH
Confidence 3456788888764321 2122333322222 22 7899999999975543 3444444 5688888766443
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0038 Score=59.33 Aligned_cols=69 Identities=14% Similarity=0.042 Sum_probs=44.9
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhHHHHHH---HhCCcEEEEeccchHHHHHHhhhh
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELID---RIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~~l~~---~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+|+|+.++.+-+. ..+.+.+ .+.|+++|.||+|+.+..+.+++.+ +.+.+.+.+||++....+.+.+.+
T Consensus 27 ~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~i 98 (276)
T TIGR03596 27 EVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAKKGKGVKKIIKAA 98 (276)
T ss_pred EEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECCCcccHHHHHHHH
Confidence 9999987644222 1222332 2579999999999976543343322 345678999999976667665554
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >KOG0467|consensus | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0017 Score=69.40 Aligned_cols=73 Identities=22% Similarity=0.252 Sum_probs=54.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC--C------------CCCCCceeeeEEE--e--eCceEEEEEEecCCCccccchH
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQF--S------------QDMIPTVGFNMRK--I--TKGNVTIKVWDIGGQPRFRSMW 82 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~--~------------~~~~pTig~~~~~--i--~~~~~~l~I~DtpG~e~~~~~~ 82 (329)
-+++++-.-.-|||||...+...+. . ..-.+|-|+.++. + -.+++.++++|+||+-+|.+..
T Consensus 10 rn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sev 89 (887)
T KOG0467|consen 10 RNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEV 89 (887)
T ss_pred eEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhhh
Confidence 4688888888999999999975332 1 1112444555543 3 3478899999999999999888
Q ss_pred HHHhhccceeE
Q psy2970 83 ERYCRGVNAIV 93 (329)
Q Consensus 83 ~~~~~~ad~iI 93 (329)
....+-+|+.+
T Consensus 90 ssas~l~d~al 100 (887)
T KOG0467|consen 90 SSASRLSDGAL 100 (887)
T ss_pred hhhhhhcCCcE
Confidence 88888888888
|
|
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.024 Score=50.87 Aligned_cols=25 Identities=40% Similarity=0.446 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+..+||.+.|+|||||||++.++.+
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHH
Confidence 4579999999999999999999864
|
|
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0093 Score=56.29 Aligned_cols=71 Identities=21% Similarity=0.229 Sum_probs=44.6
Q ss_pred hcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCC-CcEEEEEEcCCCCChhhHHHHHHHhCCcEEEEeccchHHHHH
Q psy2970 129 LFQLIKYMVDAADTDKLEASRNELHALIEKPQLIG-IPILVLGNKRDLPNALDEKELIDRIMIDFWITLTLLIRWCES 205 (329)
Q Consensus 129 ~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~-iPIiLVgNK~Dl~~~~e~~~l~~~~~~~~~etSAk~~~~~~~ 205 (329)
..|+++.|+|.+.. ++.... .+.++.+. .+ .++.+|+||.|-. .....+.+.+.+.++.-+-..+..+.+.
T Consensus 155 ~vD~vivVvDpS~~-sl~tae-ri~~L~~e---lg~k~i~~V~NKv~e~-e~~~~~~~~~~~~~vlg~iP~d~~v~~~ 226 (255)
T COG3640 155 GVDLVIVVVDPSYK-SLRTAE-RIKELAEE---LGIKRIFVVLNKVDEE-EELLRELAEELGLEVLGVIPYDPEVVEA 226 (255)
T ss_pred CCCEEEEEeCCcHH-HHHHHH-HHHHHHHH---hCCceEEEEEeeccch-hHHHHhhhhccCCeEEEEccCCHHHHhc
Confidence 34556699998743 333333 23444443 33 6799999999977 4456667777787776666666555444
|
|
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0073 Score=52.38 Aligned_cols=20 Identities=20% Similarity=0.609 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy2970 23 LTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~ 42 (329)
|.++|.+|+||||++..+..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 2 IGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999999854
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0091 Score=62.35 Aligned_cols=56 Identities=9% Similarity=0.001 Sum_probs=34.0
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh-hhHHHHHHHhCCcEEEEec
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-LDEKELIDRIMIDFWITLT 197 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~-~e~~~l~~~~~~~~~etSA 197 (329)
+|++.+. +...+...++.+.. ..+.-+|.||.|.... -.+-.+....++++..++.
T Consensus 463 LVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~~lG~aLsv~~~~~LPI~yvt~ 519 (559)
T PRK12727 463 LVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVTD 519 (559)
T ss_pred EEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCccchhHHHHHHHHhCCCEEEEeC
Confidence 7788764 33444444444322 1356789999998665 3455666777777666544
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0059 Score=58.39 Aligned_cols=69 Identities=20% Similarity=0.094 Sum_probs=45.1
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhHHHHHH---HhCCcEEEEeccchHHHHHHhhhh
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELID---RIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~~l~~---~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+|+|+.++.+-+. ..+.+.+ .+.|+++|.||+|+.+....+++.+ +.+.+.+.+||++....+.+.+.+
T Consensus 30 ~VvDar~p~~~~~--~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~vSa~~~~gi~~L~~~l 101 (287)
T PRK09563 30 EVLDARIPLSSEN--PMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFEEQGIKALAINAKKGQGVKKILKAA 101 (287)
T ss_pred EEEECCCCCCCCC--hhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHHHcCCeEEEEECCCcccHHHHHHHH
Confidence 9999987644222 2233332 2579999999999976543333333 335678999999976666666544
|
|
| >PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.049 Score=55.55 Aligned_cols=39 Identities=18% Similarity=0.095 Sum_probs=30.8
Q ss_pred CCCCcEEEEEEcCCCCCh---hhHHHHHHHhCCcEEEEeccc
Q psy2970 161 LIGIPILVLGNKRDLPNA---LDEKELIDRIMIDFWITLTLL 199 (329)
Q Consensus 161 ~~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~~~~~etSAk~ 199 (329)
..+.|+++++|=.+-..+ .-++++.++++++.+.+++..
T Consensus 178 ~igKPFvillNs~~P~s~et~~L~~eL~ekY~vpVlpvnc~~ 219 (492)
T PF09547_consen 178 EIGKPFVILLNSTKPYSEETQELAEELEEKYDVPVLPVNCEQ 219 (492)
T ss_pred HhCCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEeehHH
Confidence 357899999998886554 236678899999999987766
|
It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. |
| >KOG0464|consensus | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0015 Score=66.07 Aligned_cols=125 Identities=19% Similarity=0.143 Sum_probs=86.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc--------CCCCC------------CCCCceeeeEEEeeCceEEEEEEecCCCccccc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS--------GQFSQ------------DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS 80 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~--------~~~~~------------~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~ 80 (329)
-+|-++..-.+||||...|+.- ++... ...-|+...-..++.++.++.++||||..+|+-
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l 117 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL 117 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence 3677788888999999999853 11110 011122222224688999999999999999999
Q ss_pred hHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc
Q psy2970 81 MWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ 160 (329)
Q Consensus 81 ~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~ 160 (329)
..+.+++--|+++ .|||.+---.-+.+..|-. ..
T Consensus 118 everclrvldgav-----------------------------------------av~dasagve~qtltvwrq-----ad 151 (753)
T KOG0464|consen 118 EVERCLRVLDGAV-----------------------------------------AVFDASAGVEAQTLTVWRQ-----AD 151 (753)
T ss_pred EHHHHHHHhcCeE-----------------------------------------EEEeccCCcccceeeeehh-----cc
Confidence 9999999999999 9999875322223333322 23
Q ss_pred CCCCcEEEEEEcCCCCCh---hhHHHHHHHhCCc
Q psy2970 161 LIGIPILVLGNKRDLPNA---LDEKELIDRIMID 191 (329)
Q Consensus 161 ~~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~~~ 191 (329)
+-++|-+.+.||.|...+ ...+.+.++++..
T Consensus 152 k~~ip~~~finkmdk~~anfe~avdsi~ekl~ak 185 (753)
T KOG0464|consen 152 KFKIPAHCFINKMDKLAANFENAVDSIEEKLGAK 185 (753)
T ss_pred ccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCc
Confidence 568999999999998665 3456677777753
|
|
| >KOG0447|consensus | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.015 Score=60.65 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
-+|+++|+..+||||.+..+...
T Consensus 309 PRVVVVGDQSaGKTSVLEmiAqA 331 (980)
T KOG0447|consen 309 PRVVVVGDQSAGKTSVLEMIAQA 331 (980)
T ss_pred ceEEEEcCccccchHHHHHHHHh
Confidence 58999999999999999998653
|
|
| >KOG3859|consensus | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0072 Score=58.53 Aligned_cols=56 Identities=18% Similarity=0.345 Sum_probs=41.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCC----CCCceeeeEEEe----eCceEEEEEEecCCC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQD----MIPTVGFNMRKI----TKGNVTIKVWDIGGQ 75 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~----~~pTig~~~~~i----~~~~~~l~I~DtpG~ 75 (329)
.++|+.+|..|.|||||+..+++-.|... ..|+++...... .+-.+++.|.||.|.
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGf 105 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGF 105 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeeccc
Confidence 68999999999999999999999877533 334544443332 234568899999984
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0095 Score=60.45 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+.-.|+++|++||||||++..+.+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999998865
|
|
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0027 Score=51.68 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.|+|.|.+||||||+.+++...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999774
|
... |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.01 Score=58.84 Aligned_cols=72 Identities=22% Similarity=0.240 Sum_probs=47.3
Q ss_pred eeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh----hhHH----HHHHHhCC---cEEEEeccch
Q psy2970 132 LIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA----LDEK----ELIDRIMI---DFWITLTLLI 200 (329)
Q Consensus 132 ~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~----~e~~----~l~~~~~~---~~~etSAk~~ 200 (329)
++++|+|+.|... .+...+.+.. .+.|+++|+||+|+... .+.+ .+++++++ +++.+||++.
T Consensus 72 lIv~VVD~~D~~~--s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g 144 (365)
T PRK13796 72 LVVNVVDIFDFNG--SWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKG 144 (365)
T ss_pred EEEEEEECccCCC--chhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCC
Confidence 5569999987431 2223333332 25789999999999642 2222 33555666 5899999997
Q ss_pred HHHHHHhhhh
Q psy2970 201 RWCESFLHHF 210 (329)
Q Consensus 201 ~~~~~~l~~i 210 (329)
.+.+++++.+
T Consensus 145 ~gI~eL~~~I 154 (365)
T PRK13796 145 HGIDELLEAI 154 (365)
T ss_pred CCHHHHHHHH
Confidence 7777777665
|
|
| >TIGR02475 CobW cobalamin biosynthesis protein CobW | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.033 Score=54.93 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~ 43 (329)
.++.|.-|+|||||+|++...
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 567799999999999999864
|
A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683). |
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.036 Score=55.91 Aligned_cols=129 Identities=16% Similarity=0.132 Sum_probs=72.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcee----eeEE-------------------E-----------eeCceE
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG----FNMR-------------------K-----------ITKGNV 65 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig----~~~~-------------------~-----------i~~~~~ 65 (329)
.-.|+++|+.||||||-+-.|.....-......++ +.|+ - -...++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 56799999999999999888764333111112222 1222 0 023456
Q ss_pred EEEEEecCCCccccchH----HHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCC
Q psy2970 66 TIKVWDIGGQPRFRSMW----ERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAAD 141 (329)
Q Consensus 66 ~l~I~DtpG~e~~~~~~----~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~ 141 (329)
.+.+.||+|...+.... ..++..+.-+- +| +|++++.
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~------------------~~---------------------Lvlsat~ 323 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIE------------------VY---------------------LVLSATT 323 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccce------------------EE---------------------EEEecCc
Confidence 78899999976554332 33333332211 12 8899886
Q ss_pred cccHHHHHHHHHHHHhCCcCCCCcE-EEEEEcCCCCCh-hhHHHHHHHhCCcEEEE
Q psy2970 142 TDKLEASRNELHALIEKPQLIGIPI-LVLGNKRDLPNA-LDEKELIDRIMIDFWIT 195 (329)
Q Consensus 142 ~~S~~~~~~~l~~i~~~~~~~~iPI-iLVgNK~Dl~~~-~e~~~l~~~~~~~~~et 195 (329)
.. +.+...+... ..+|+ =++.+|.|-... -+.-.+..+-+.|.-.+
T Consensus 324 K~--~dlkei~~~f------~~~~i~~~I~TKlDET~s~G~~~s~~~e~~~PV~Yv 371 (407)
T COG1419 324 KY--EDLKEIIKQF------SLFPIDGLIFTKLDETTSLGNLFSLMYETRLPVSYV 371 (407)
T ss_pred ch--HHHHHHHHHh------ccCCcceeEEEcccccCchhHHHHHHHHhCCCeEEE
Confidence 43 3444444333 22333 466899997665 34555666666664444
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.045 Score=55.59 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+.-.|+++|++||||||++..|..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 346899999999999999999953
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.019 Score=46.23 Aligned_cols=26 Identities=35% Similarity=0.385 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
..-.+++.|++|+|||++++.+...-
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998754
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.068 Score=45.41 Aligned_cols=107 Identities=10% Similarity=0.080 Sum_probs=61.8
Q ss_pred EEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE-eeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeeh
Q psy2970 24 TLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK-ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVS 102 (329)
Q Consensus 24 lllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~-i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~ 102 (329)
+.-|.+|+||||+.-.+...--. .-..+.-.+... ...-.+.+.++|+|+.. .......+..+|.++
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~vd~D~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vv--------- 71 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAK-LGKRVLLLDADLGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVI--------- 71 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEECCCCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEE---------
Confidence 34578999999998776532110 001111111110 01111678899999743 333456788889888
Q ss_pred hccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC
Q psy2970 103 KHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN 177 (329)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~ 177 (329)
++.+.+ +.++......++.+.+.. ...++.+|.|+.+-..
T Consensus 72 --------------------------------iv~~~~-~~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~~~ 111 (139)
T cd02038 72 --------------------------------VVTTPE-PTSITDAYALIKKLAKQL--RVLNFRVVVNRAESPK 111 (139)
T ss_pred --------------------------------EEcCCC-hhHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCCHH
Confidence 888875 344555555555554331 3456789999997543
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.015 Score=59.11 Aligned_cols=56 Identities=16% Similarity=-0.022 Sum_probs=33.2
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh-hhHHHHHHHhCCcEEEEec
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-LDEKELIDRIMIDFWITLT 197 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~-~e~~~l~~~~~~~~~etSA 197 (329)
+|+|.+.. +..........+.. + ..=+|.||.|.... -.+..++...++|+..+..
T Consensus 218 LVvda~tg---q~~~~~a~~f~~~v---~-i~giIlTKlD~~~~~G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 218 LVVDAMTG---QDAVNTAKTFNERL---G-LTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred EEEeccch---HHHHHHHHHHHhhC---C-CCEEEEeCccCcccccHHHHHHHHHCcCEEEEeC
Confidence 99998643 33444334333221 1 23567999996443 3466777888888666554
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.028 Score=53.85 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+.-+++++|++|+||||++..+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~ 97 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAW 97 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHH
Confidence 346999999999999999998854
|
|
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.0043 Score=51.77 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy2970 23 LTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~ 42 (329)
|+++|+|||||||+++++..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999974
|
... |
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.062 Score=54.24 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.--++++|+.||||||++..+..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999863
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.089 Score=53.69 Aligned_cols=56 Identities=20% Similarity=-0.007 Sum_probs=32.2
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh-hhHHHHHHHhCCcEEEEec
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-LDEKELIDRIMIDFWITLT 197 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~-~e~~~l~~~~~~~~~etSA 197 (329)
+|+|.+.. ++..+......+.. + ..-+|.||.|.... -.+..++...++|...++.
T Consensus 219 lVlda~~g---q~av~~a~~F~~~~---~-i~giIlTKlD~~~rgG~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 219 LVVDAMTG---QDAVNTAKAFNEAL---G-LTGVILTKLDGDARGGAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred EEEecccH---HHHHHHHHHHHhhC---C-CCEEEEeCccCcccccHHHHHHHHHCcCEEEEeC
Confidence 99997642 33434344433221 1 12467799996443 3466677888888665544
|
|
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.039 Score=41.79 Aligned_cols=61 Identities=15% Similarity=0.115 Sum_probs=36.5
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccch-HHHHhhccceeE
Q psy2970 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSM-WERYCRGVNAIV 93 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~-~~~~~~~ad~iI 93 (329)
+++.|.+|+||||+...+...--.. |....-++ .+.+.|+++....... .......+|.++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~------g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi 63 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR------GKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVI 63 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC------CCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEE
Confidence 6788999999999999886431111 11111122 6779999986543221 133455666666
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.0049 Score=54.41 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.+|+|+|++|||||||.+++...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999764
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.072 Score=54.08 Aligned_cols=31 Identities=10% Similarity=-0.136 Sum_probs=22.8
Q ss_pred EEEEEcCCCCCh-hhHHHHHHHhCCcEEEEec
Q psy2970 167 LVLGNKRDLPNA-LDEKELIDRIMIDFWITLT 197 (329)
Q Consensus 167 iLVgNK~Dl~~~-~e~~~l~~~~~~~~~etSA 197 (329)
-++.||.|-... -..-++....++|...++.
T Consensus 361 ~vI~TKlDet~~~G~i~~~~~~~~lPv~yit~ 392 (424)
T PRK05703 361 GLIFTKLDETSSLGSILSLLIESGLPISYLTN 392 (424)
T ss_pred EEEEecccccccccHHHHHHHHHCCCEEEEeC
Confidence 588999998665 4466777888888666654
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.03 Score=57.17 Aligned_cols=23 Identities=48% Similarity=0.560 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIA 41 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~ 41 (329)
+...|+++|.+||||||++..+.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 46789999999999999998885
|
|
| >KOG2485|consensus | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.0073 Score=59.00 Aligned_cols=58 Identities=19% Similarity=0.316 Sum_probs=37.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCC------CCCCCCceeeeEEE-ee-CceEEEEEEecCCC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQF------SQDMIPTVGFNMRK-IT-KGNVTIKVWDIGGQ 75 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~------~~~~~pTig~~~~~-i~-~~~~~l~I~DtpG~ 75 (329)
..++.+.++|-||||||||+|++..... .....|.+...+.. +. ...-.+.+.||||.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCc
Confidence 4679999999999999999999865322 12233444433332 21 12223779999994
|
|
| >COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.0051 Score=55.23 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
++|+|+|+||+||||+.+++...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999876
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.025 Score=57.57 Aligned_cols=23 Identities=35% Similarity=0.378 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
..-++++|++||||||++.+|..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34588999999999999999964
|
|
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.0056 Score=54.15 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.+|+|+|.+|+|||||.+++...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999998653
|
|
| >KOG2484|consensus | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.0066 Score=60.96 Aligned_cols=59 Identities=19% Similarity=0.355 Sum_probs=43.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCceeeeEEEeeCceEEEEEEecCCCc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQF-SQDMIPTVGFNMRKITKGNVTIKVWDIGGQP 76 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~-~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e 76 (329)
-+..+.+-|+|.|||||||+||++..++. .....|++...++.+.. +-.+.+.|.||..
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~L-dk~i~llDsPgiv 308 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKL-DKKIRLLDSPGIV 308 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheec-cCCceeccCCcee
Confidence 35679999999999999999999998776 34445666555554432 2357799999953
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.038 Score=57.12 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
--++++|++||||||.+..|..
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHH
Confidence 4689999999999999999874
|
|
| >cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.21 Score=45.23 Aligned_cols=65 Identities=12% Similarity=0.002 Sum_probs=37.5
Q ss_pred hcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCc-EEEEEEcCCCCC-hhhHHHHHHHhCCcEEE
Q psy2970 129 LFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIP-ILVLGNKRDLPN-ALDEKELIDRIMIDFWI 194 (329)
Q Consensus 129 ~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iP-IiLVgNK~Dl~~-~~e~~~l~~~~~~~~~e 194 (329)
..+.++++++.+ ..++......++.+.+.....+.+ ..++.||.|... ....+++.+.++.+++.
T Consensus 141 ~ad~vliv~~p~-~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~~~~~~~~~~~~~~~~~vl~ 207 (212)
T cd02117 141 KADEIYIVTSGE-FMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTDRETELIDAFAERLGTQVIH 207 (212)
T ss_pred cCcEEEEEeccc-HHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCccHHHHHHHHHHHcCCCEEE
Confidence 456677777664 344444444333333221122444 458999999763 34567888888877554
|
Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.0087 Score=47.52 Aligned_cols=26 Identities=31% Similarity=0.299 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS 46 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~ 46 (329)
-.++++|++|+||||+++.+...-..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 47899999999999999999875543
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.044 Score=59.50 Aligned_cols=22 Identities=41% Similarity=0.377 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
--|+++|+.||||||.+..+..
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHh
Confidence 4689999999999999999875
|
|
| >cd02032 Bchl_like This family of proteins contains bchL and chlL | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.16 Score=47.51 Aligned_cols=66 Identities=12% Similarity=0.089 Sum_probs=37.1
Q ss_pred hhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcE-EEEEEcCCCCChhhHHHHHHHhCCcEEEE
Q psy2970 127 SLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPI-LVLGNKRDLPNALDEKELIDRIMIDFWIT 195 (329)
Q Consensus 127 ~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPI-iLVgNK~Dl~~~~e~~~l~~~~~~~~~et 195 (329)
-...+.++++...+ +.++......++.+.+.....+.++ -+|.|+.|. ....+++.++++.+++..
T Consensus 136 l~~aD~vlip~~p~-~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~--~~~i~~~~~~~~~~vl~~ 202 (267)
T cd02032 136 LNYADYALIVTDND-FDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK--TDLIDKFVEAVGMPVLAV 202 (267)
T ss_pred hhhcCEEEEEecCC-cccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH--HHHHHHHHHhCCCCEEEE
Confidence 44567777777653 3444454444433322111245554 478999984 234566777788776553
|
Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen. |
| >cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.36 Score=41.48 Aligned_cols=81 Identities=6% Similarity=-0.114 Sum_probs=49.5
Q ss_pred EEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccH
Q psy2970 66 TIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKL 145 (329)
Q Consensus 66 ~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~ 145 (329)
.+.|+|+|+.... .....+..+|.++ ++++.+. .++
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~vi-----------------------------------------iv~~~~~-~s~ 99 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEAL-----------------------------------------LVTTPEI-SSL 99 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEE-----------------------------------------EEeCCCc-chH
Confidence 5788999875432 2334567778777 7777653 445
Q ss_pred HHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChh---hHHHHHHHhCCcEE
Q psy2970 146 EASRNELHALIEKPQLIGIPILVLGNKRDLPNAL---DEKELIDRIMIDFW 193 (329)
Q Consensus 146 ~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~---e~~~l~~~~~~~~~ 193 (329)
......++.+... ......+|.|+.|..... ..+++.+.++.+++
T Consensus 100 ~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~~~~~~~~~~~~~~~~~~v~ 147 (179)
T cd02036 100 RDADRVKGLLEAL---GIKVVGVIVNRVRPDMVEGGDMVEDIEEILGVPLL 147 (179)
T ss_pred HHHHHHHHHHHHc---CCceEEEEEeCCcccccchhhHHHHHHHHhCCCEE
Confidence 5555544444331 123467899999876532 23566777787755
|
The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.043 Score=54.36 Aligned_cols=82 Identities=10% Similarity=-0.051 Sum_probs=53.6
Q ss_pred hhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhh--HHHHHH-HhCCcEEEEeccchHHH
Q psy2970 127 SLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD--EKELID-RIMIDFWITLTLLIRWC 203 (329)
Q Consensus 127 ~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e--~~~l~~-~~~~~~~etSAk~~~~~ 203 (329)
+--.|.+++|+++..+-....+..++..+ + ..++|.+||+||+||.+..+ .+.+.+ ..+++.+.+|+++....
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a-~---~~~i~piIVLNK~DL~~~~~~~~~~~~~~~~g~~Vi~vSa~~g~gl 185 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALA-W---ESGAEPVIVLTKADLCEDAEEKIAEVEALAPGVPVLAVSALDGEGL 185 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHH-H---HcCCCEEEEEEChhcCCCHHHHHHHHHHhCCCCcEEEEECCCCccH
Confidence 34467788999996433333333333333 2 25678899999999976421 222322 34678999999998888
Q ss_pred HHHhhhhcC
Q psy2970 204 ESFLHHFGS 212 (329)
Q Consensus 204 ~~~l~~i~~ 212 (329)
+++...+..
T Consensus 186 ~~L~~~L~~ 194 (356)
T PRK01889 186 DVLAAWLSG 194 (356)
T ss_pred HHHHHHhhc
Confidence 888877754
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.05 Score=53.02 Aligned_cols=26 Identities=23% Similarity=0.197 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQF 45 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~ 45 (329)
--+++++|++|.|||+++++|.....
T Consensus 61 mp~lLivG~snnGKT~Ii~rF~~~hp 86 (302)
T PF05621_consen 61 MPNLLIVGDSNNGKTMIIERFRRLHP 86 (302)
T ss_pred CCceEEecCCCCcHHHHHHHHHHHCC
Confidence 35799999999999999999998653
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >KOG1424|consensus | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.016 Score=59.80 Aligned_cols=56 Identities=16% Similarity=0.209 Sum_probs=35.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCceeeeEEEeeCceEEEEEEecCCCc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVGFNMRKITKGNVTIKVWDIGGQP 76 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig~~~~~i~~~~~~l~I~DtpG~e 76 (329)
.+.|-+||.|||||||+||.|.+++-. ....|.-.--+..+.. .-.+.+-|+||..
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~l-s~~v~LCDCPGLV 370 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFL-SPSVCLCDCPGLV 370 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEc-CCCceecCCCCcc
Confidence 488999999999999999999998753 1111211122222211 1124578999953
|
|
| >KOG0463|consensus | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.022 Score=57.24 Aligned_cols=66 Identities=12% Similarity=0.172 Sum_probs=45.9
Q ss_pred EECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhHHHHHHHhCCcEEEEeccchHHHHH
Q psy2970 137 VDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRIMIDFWITLTLLIRWCES 205 (329)
Q Consensus 137 ~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~~l~~~~~~~~~etSAk~~~~~~~ 205 (329)
+|..-.+-+++...++..++..+...++|+ +|-++-|+... +.+|..+-.+|.|.+|..++.+++.
T Consensus 283 IDMCPANiLqEtmKll~rllkS~gcrK~Pv-lVrs~DDVv~~--A~NF~Ser~CPIFQvSNVtG~NL~L 348 (641)
T KOG0463|consen 283 IDMCPANILQETMKLLTRLLKSPGCRKLPV-LVRSMDDVVHA--AVNFPSERVCPIFQVSNVTGTNLPL 348 (641)
T ss_pred eccCcHHHHHHHHHHHHHHhcCCCcccCcE-EEecccceEEe--eccCccccccceEEeccccCCChHH
Confidence 355545667777777888888777778886 56788776543 3345566678999999999555443
|
|
| >PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.011 Score=50.93 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=22.4
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 5 LNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 5 ~~~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+..+.+.+......+.-.++|.|++|+|||+|++++..
T Consensus 9 ~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 9 IERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp HHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34445555433345556799999999999999999865
|
|
| >KOG0460|consensus | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.11 Score=51.84 Aligned_cols=136 Identities=19% Similarity=0.260 Sum_probs=80.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc-------CCC---------CCCCCCceeeeEEEeeCc--eEEEEEEecCCCcccc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS-------GQF---------SQDMIPTVGFNMRKITKG--NVTIKVWDIGGQPRFR 79 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~-------~~~---------~~~~~pTig~~~~~i~~~--~~~l~I~DtpG~e~~~ 79 (329)
|..++|--+|--.-|||||.-+++. .++ ++.....+.++...+.+. .-...=.|.||+.+|-
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI 131 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI 131 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence 4568999999999999999999864 111 122223333333333322 2334567999988763
Q ss_pred chHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC
Q psy2970 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP 159 (329)
Q Consensus 80 ~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~ 159 (329)
..-..-....|+.| +|+..+|-. +...++-+.-..+
T Consensus 132 KNMItGaaqMDGaI-----------------------------------------LVVaatDG~-MPQTrEHlLLArQ-- 167 (449)
T KOG0460|consen 132 KNMITGAAQMDGAI-----------------------------------------LVVAATDGP-MPQTREHLLLARQ-- 167 (449)
T ss_pred HHhhcCccccCceE-----------------------------------------EEEEcCCCC-CcchHHHHHHHHH--
Confidence 22111223457777 999998843 2233332222211
Q ss_pred cCCCCc-EEEEEEcCCCCCh--------hhHHHHHHHhC-----CcEEEEeccc
Q psy2970 160 QLIGIP-ILVLGNKRDLPNA--------LDEKELIDRIM-----IDFWITLTLL 199 (329)
Q Consensus 160 ~~~~iP-IiLVgNK~Dl~~~--------~e~~~l~~~~~-----~~~~etSAk~ 199 (329)
-+++ ++|+.||.|+.++ -|..++..+++ +|.+.=||..
T Consensus 168 --VGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL~ 219 (449)
T KOG0460|consen 168 --VGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDNTPVIRGSALC 219 (449)
T ss_pred --cCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCCCCeeecchhh
Confidence 2333 7788999999854 24556777776 4677777765
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.0096 Score=48.43 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~ 43 (329)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999764
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >PF13521 AAA_28: AAA domain; PDB: 1LW7_A | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.007 Score=52.37 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999865
|
|
| >KOG0465|consensus | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.022 Score=59.89 Aligned_cols=121 Identities=17% Similarity=0.163 Sum_probs=75.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC--C------CCC------------CCCceeeeEEEeeCceEEEEEEecCCCccccch
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ--F------SQD------------MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSM 81 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~--~------~~~------------~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~ 81 (329)
+|-+.----+||||+-.++.... . .+. ..-|+...-..+..+++++.++||||+.+|.-.
T Consensus 41 NIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~E 120 (721)
T KOG0465|consen 41 NIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTFE 120 (721)
T ss_pred ccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEEE
Confidence 45555566799999999986311 0 000 001111111124566899999999999999877
Q ss_pred HHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCC-cccHHHHHHHHHHHHhCCc
Q psy2970 82 WERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAAD-TDKLEASRNELHALIEKPQ 160 (329)
Q Consensus 82 ~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~-~~S~~~~~~~l~~i~~~~~ 160 (329)
.+..++--|+.+ +|+|... -++ .....++++.+
T Consensus 121 VeRALrVlDGaV-----------------------------------------lvl~aV~GVqs--Qt~tV~rQ~~r--- 154 (721)
T KOG0465|consen 121 VERALRVLDGAV-----------------------------------------LVLDAVAGVES--QTETVWRQMKR--- 154 (721)
T ss_pred ehhhhhhccCeE-----------------------------------------EEEEcccceeh--hhHHHHHHHHh---
Confidence 777888888888 7777543 222 22223344422
Q ss_pred CCCCcEEEEEEcCCCCCh---hhHHHHHHHhC
Q psy2970 161 LIGIPILVLGNKRDLPNA---LDEKELIDRIM 189 (329)
Q Consensus 161 ~~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~ 189 (329)
-++|.+.+.||.|...+ .....+..+++
T Consensus 155 -y~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~ 185 (721)
T KOG0465|consen 155 -YNVPRICFINKMDRMGASPFRTLNQIRTKLN 185 (721)
T ss_pred -cCCCeEEEEehhhhcCCChHHHHHHHHhhcC
Confidence 47999999999998765 23444444444
|
|
| >COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.026 Score=63.63 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=19.3
Q ss_pred HHHHHHhCCcCCCCcEEEEEEcCCCCCh
Q psy2970 151 ELHALIEKPQLIGIPILVLGNKRDLPNA 178 (329)
Q Consensus 151 ~l~~i~~~~~~~~iPIiLVgNK~Dl~~~ 178 (329)
-+.++.+.. ....||.|++||.|+..-
T Consensus 245 RL~El~~tL-~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 245 RLQELRETL-HARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHHHHHHhh-ccCCceEEEEeccccccc
Confidence 344554432 367999999999999763
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.27 Score=49.53 Aligned_cols=56 Identities=13% Similarity=0.027 Sum_probs=33.4
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh-hhHHHHHHHhCCcEEEEec
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-LDEKELIDRIMIDFWITLT 197 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~-~e~~~l~~~~~~~~~etSA 197 (329)
+|+|++.. ...+.+.+..... . -+-=++.+|.|-... -.+-.++.+.+.|...++.
T Consensus 291 LVlsat~~--~~~~~~~~~~~~~----~-~~~~~I~TKlDet~~~G~~l~~~~~~~~Pi~yit~ 347 (388)
T PRK12723 291 LAVSSTTK--TSDVKEIFHQFSP----F-SYKTVIFTKLDETTCVGNLISLIYEMRKEVSYVTD 347 (388)
T ss_pred EEEcCCCC--HHHHHHHHHHhcC----C-CCCEEEEEeccCCCcchHHHHHHHHHCCCEEEEeC
Confidence 89998764 2333333333311 1 123578899998665 3456677778887655543
|
|
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.022 Score=56.15 Aligned_cols=142 Identities=14% Similarity=0.111 Sum_probs=76.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc----CC----------CC-------CCCCCceeeeEE-----------------E
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS----GQ----------FS-------QDMIPTVGFNMR-----------------K 59 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~----~~----------~~-------~~~~pTig~~~~-----------------~ 59 (329)
++..-|+++|-.||||||-+-.+.. +. |. .......|..+- .
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 4578899999999999998887742 11 10 000000111111 1
Q ss_pred eeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEEC
Q psy2970 60 ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDA 139 (329)
Q Consensus 60 i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dv 139 (329)
-..+++-+.+.||+|...-..-....++....++ .|......+= ++++.|.
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~--------~k~~~~ap~e---------------------~llvlDA 267 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVI--------KKDDPDAPHE---------------------ILLVLDA 267 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHh--------ccccCCCCce---------------------EEEEEEc
Confidence 1345677899999996654443333444444343 1111111111 2277797
Q ss_pred CC-cccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh-hhHHHHHHHhCCcEEEEe
Q psy2970 140 AD-TDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-LDEKELIDRIMIDFWITL 196 (329)
Q Consensus 140 t~-~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~-~e~~~l~~~~~~~~~etS 196 (329)
+- ++.++..+. +.+.... -=++.+|.|-... --.-.++.++++|...+-
T Consensus 268 ttGqnal~QAk~-F~eav~l-------~GiIlTKlDgtAKGG~il~I~~~l~~PI~fiG 318 (340)
T COG0552 268 TTGQNALSQAKI-FNEAVGL-------DGIILTKLDGTAKGGIILSIAYELGIPIKFIG 318 (340)
T ss_pred ccChhHHHHHHH-HHHhcCC-------ceEEEEecccCCCcceeeeHHHHhCCCEEEEe
Confidence 64 444444433 4444321 1367899995443 234567788888865553
|
|
| >KOG2423|consensus | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.015 Score=58.65 Aligned_cols=72 Identities=19% Similarity=0.214 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcC-CCCceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCceeeeEEEeeCceEEEEEEecCCCcc
Q psy2970 5 LNRILDWFKSLF-WKEEMELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVGFNMRKITKGNVTIKVWDIGGQPR 77 (329)
Q Consensus 5 ~~~~~~~~~~~~-~~k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~ 77 (329)
+-.++..|.++- -++++-|-++|.||+||||+||.|-..++- ...+|...-. ..+-.-.-++-++|+||...
T Consensus 291 lI~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKV-WQYItLmkrIfLIDcPGvVy 364 (572)
T KOG2423|consen 291 LIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKV-WQYITLMKRIFLIDCPGVVY 364 (572)
T ss_pred HHHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchH-HHHHHHHhceeEecCCCccC
Confidence 334555555554 678899999999999999999999887663 2223322111 11111122456889999543
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.012 Score=48.89 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
.=.++|+|+.|+|||||++.+.+..
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEccCCCccccceeeecccc
Confidence 3478999999999999999887743
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >PRK06217 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.013 Score=52.05 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.+|+|+|.+||||||+.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999864
|
|
| >PRK03839 putative kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.012 Score=51.72 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
++|+++|.||+||||+.+++...
T Consensus 1 m~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 1 MIIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999764
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.02 Score=56.69 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
-+++++|.+|+|||||+|.+.+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 479999999999999999998743
|
|
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.012 Score=47.59 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~ 43 (329)
|+|.|.+||||||+.+.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999764
|
... |
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.077 Score=51.70 Aligned_cols=77 Identities=17% Similarity=0.055 Sum_probs=53.8
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhHH-----HHHHHhCCcEEEEeccchHHHHHHhhh
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEK-----ELIDRIMIDFWITLTLLIRWCESFLHH 209 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~-----~l~~~~~~~~~etSAk~~~~~~~~l~~ 209 (329)
+|+.+.+|+-=....+-+.-+.+ ..++.-+|+.||+||.+.++.+ .+...++++.+.+|+++....+++...
T Consensus 85 iIvs~~~P~~~~~~ldR~Lv~ae---~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~~~l~~~ 161 (301)
T COG1162 85 IVVSLVDPDFNTNLLDRYLVLAE---AGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGLEELAEL 161 (301)
T ss_pred EEEeccCCCCCHHHHHHHHHHHH---HcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcccHHHHHHH
Confidence 78888887643344333333333 3567778889999998764433 366678899999999998888888777
Q ss_pred hcCCC
Q psy2970 210 FGSHP 214 (329)
Q Consensus 210 i~~~~ 214 (329)
+....
T Consensus 162 l~~~~ 166 (301)
T COG1162 162 LAGKI 166 (301)
T ss_pred hcCCe
Confidence 75543
|
|
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.072 Score=50.61 Aligned_cols=34 Identities=29% Similarity=0.239 Sum_probs=25.2
Q ss_pred HHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 11 WFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 11 ~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
.+........--|++.|++|+||||+++.+...-
T Consensus 71 ~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 71 IFRKLLEKPHGIILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhh
Confidence 3444443344469999999999999999997654
|
It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB. |
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.014 Score=51.16 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
-++|+|++|||||||++++...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998765
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.094 Score=41.65 Aligned_cols=64 Identities=9% Similarity=0.011 Sum_probs=37.6
Q ss_pred EEEEc-CCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 23 LTLVG-LQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 23 IlllG-~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
|++.| .+|+||||+...+...--. .-.++.-.+ .+ ..+.+.++|+|+... ......+..+|.++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl~~d---~d-~~~d~viiD~p~~~~--~~~~~~l~~ad~vi 66 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVLLID---LD-PQYDYIIIDTPPSLG--LLTRNALAAADLVL 66 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEEEEe---CC-CCCCEEEEeCcCCCC--HHHHHHHHHCCEEE
Confidence 45666 6899999988877532111 111121111 11 126788999998643 23346777788888
|
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. |
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.017 Score=43.47 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~ 43 (329)
|.+.|++|+||||+.+++...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999764
|
Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. |
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.016 Score=51.52 Aligned_cols=60 Identities=13% Similarity=0.160 Sum_probs=31.0
Q ss_pred EEEEE-CCCccc-HHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhHHHHHHHhCCcEEEEeccc
Q psy2970 134 KYMVD-AADTDK-LEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRIMIDFWITLTLL 199 (329)
Q Consensus 134 ~lV~D-vt~~~S-~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~~l~~~~~~~~~etSAk~ 199 (329)
++|+| +...+- -......+.++++ .+.|++.+.-+.. +..-.+++.+..++..+++....
T Consensus 98 liviDEIG~mEl~~~~F~~~v~~~l~----s~~~vi~vv~~~~--~~~~l~~i~~~~~~~i~~vt~~N 159 (168)
T PF03266_consen 98 LIVIDEIGKMELKSPGFREAVEKLLD----SNKPVIGVVHKRS--DNPFLEEIKRRPDVKIFEVTEEN 159 (168)
T ss_dssp EEEE---STTCCC-CHHHHHHHHHHC----TTSEEEEE--SS----SCCHHHHHTTTTSEEEE--TTT
T ss_pred EEEEeccchhhhcCHHHHHHHHHHHc----CCCcEEEEEecCC--CcHHHHHHHhCCCcEEEEeChhH
Confidence 38888 443322 1233444445544 5678888888873 22346677777788888876555
|
It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A. |
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.017 Score=51.27 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.++|+|++|+|||||++.+.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999664
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.02 Score=43.12 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
-.+|.|+.|+|||||+.++.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998853
|
|
| >PRK14532 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.017 Score=50.98 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
++|+++|+|||||||+.+++...
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999753
|
|
| >PRK08233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.022 Score=49.44 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
..-|.+.|.+|||||||.+++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 456788899999999999999864
|
|
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.021 Score=51.39 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
++...|.|.|++|||||||.+.+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999999764
|
|
| >TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.38 Score=44.91 Aligned_cols=65 Identities=15% Similarity=0.121 Sum_probs=36.8
Q ss_pred hhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcE-EEEEEcCCCCChhhHHHHHHHhCCcEEEE
Q psy2970 128 LLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPI-LVLGNKRDLPNALDEKELIDRIMIDFWIT 195 (329)
Q Consensus 128 ~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPI-iLVgNK~Dl~~~~e~~~l~~~~~~~~~et 195 (329)
...+.++++... +..++......++.+.+.....++++ -+|.|+.|.. ...+++.++++.+++..
T Consensus 137 ~aAD~vlip~~~-~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~--~~~~~~~~~~~~~vl~~ 202 (268)
T TIGR01281 137 QYADYALVVAAN-DFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDAT--DLIERFNERVGMPVLGV 202 (268)
T ss_pred hhcCEEEEEecC-chhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCChH--HHHHHHHHHcCCCEEEE
Confidence 345666666544 34445555444443333211245654 4788998865 34556677788887754
|
The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit. |
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.019 Score=50.17 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~ 44 (329)
-|+|+|++|||||||++.+.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 48999999999999999998743
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.019 Score=50.06 Aligned_cols=21 Identities=33% Similarity=0.294 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
-|+++|.+||||||+.+.+..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999974
|
Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. |
| >cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.21 Score=40.59 Aligned_cols=101 Identities=11% Similarity=0.000 Sum_probs=55.6
Q ss_pred EcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhcc
Q psy2970 26 VGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHI 105 (329)
Q Consensus 26 lG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~ 105 (329)
=+.+|+||||+...+...--......+.-.+...- ....+.+.|+|+... ......+..+|.++
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~--~~~D~IIiDtpp~~~--~~~~~~l~~aD~vl------------ 69 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ--FGDDYVVVDLGRSLD--EVSLAALDQADRVF------------ 69 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC--CCCCEEEEeCCCCcC--HHHHHHHHHcCeEE------------
Confidence 35799999998887753211110111111111100 111678999998653 23345677888888
Q ss_pred ccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 106 KRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
++.+.+ ..++......+..+.+........+.+|+|+
T Consensus 70 -----------------------------vvv~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 70 -----------------------------LVTQQD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred -----------------------------EEecCC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 777764 4456666665555544321113457788885
|
The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome. |
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.025 Score=57.45 Aligned_cols=24 Identities=46% Similarity=0.522 Sum_probs=20.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHH
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIA 41 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~ 41 (329)
+.+..|+++|..|+||||..-.+.
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA 121 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLA 121 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHH
Confidence 456789999999999999887764
|
|
| >PRK14530 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.02 Score=52.08 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
.+|+|+|+|||||||+.+.+..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999965
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.033 Score=49.61 Aligned_cols=34 Identities=21% Similarity=0.190 Sum_probs=25.9
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 9 LDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 9 ~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
..+++.... ..-.++++|++|+||||+++.+.+-
T Consensus 15 ~~~l~~~v~-~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 15 AAYLWLAVE-ARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred HHHHHHHHh-CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 344444443 3567999999999999999998864
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2 | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.021 Score=48.72 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~ 43 (329)
|+++|++|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
|
7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. |
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.046 Score=48.64 Aligned_cols=55 Identities=15% Similarity=0.117 Sum_probs=33.9
Q ss_pred ceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhHHHHHHHh
Q psy2970 131 QLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRI 188 (329)
Q Consensus 131 ~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~~l~~~~ 188 (329)
|++++|+|+.++.+-.. ..+.+.+. ....+.|+++|.||+|+.+.....++.+.+
T Consensus 1 DvVl~VvDar~p~~~~~--~~i~~~~~-l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~ 55 (172)
T cd04178 1 DVILEVLDARDPLGCRC--PQVEEAVL-QAGGNKKLVLVLNKIDLVPKENVEKWLKYL 55 (172)
T ss_pred CEEEEEEECCCCCCCCC--HHHHHHHH-hccCCCCEEEEEehhhcCCHHHHHHHHHHH
Confidence 46779999988632111 12222211 112468999999999998876655555554
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.024 Score=47.49 Aligned_cols=21 Identities=38% Similarity=0.518 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
.|+++|++|+|||+|++.+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999875
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.027 Score=50.85 Aligned_cols=26 Identities=27% Similarity=0.233 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
++..-|.+.|++|+|||||++.+.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 45677899999999999999999763
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >PRK13851 type IV secretion system protein VirB11; Provisional | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.11 Score=51.54 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
+.+.+|++.|++|+|||||++.+.+.-
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHccc
Confidence 356899999999999999999998754
|
|
| >KOG1143|consensus | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.057 Score=54.30 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
+++++++|...+|||||+--++.+.
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQge 191 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGE 191 (591)
T ss_pred EEEEEEecCcccCcceeeeeeeccc
Confidence 5899999999999999998887644
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.022 Score=53.32 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
=.++++|++|||||||++.+-+=+
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCc
Confidence 368899999999999999997644
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.024 Score=50.53 Aligned_cols=21 Identities=33% Similarity=0.376 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~ 43 (329)
|.|.|++|||||||.+.+.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999764
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >PRK06696 uridine kinase; Validated | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.056 Score=49.50 Aligned_cols=39 Identities=26% Similarity=0.491 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 4 LLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 4 ~~~~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
++..+-+...+....+.+-|+|-|.+|||||||.+++..
T Consensus 6 ~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 6 LIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 345555566555566789999999999999999999875
|
|
| >PTZ00088 adenylate kinase 1; Provisional | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.028 Score=52.45 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
+..++|+|+|+|||||||+.+.+...
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34588999999999999999999663
|
|
| >PRK02496 adk adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.029 Score=49.46 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
++|+++|+||+||||+.+.+...
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~ 24 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEH 24 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999753
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.026 Score=53.51 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
=|.++|++|+|||||+|-+.+
T Consensus 31 fvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 378999999999999999976
|
|
| >PRK13949 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.029 Score=49.61 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
+|+|+|.+|+||||+.+.+...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988753
|
|
| >TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.027 Score=49.30 Aligned_cols=21 Identities=29% Similarity=0.267 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~ 43 (329)
|+++|+|||||||+.+++...
T Consensus 2 i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999763
|
This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. |
| >cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP) | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.024 Score=49.76 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
+|+|+|+|||||||+.+.|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
|
This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates. |
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.046 Score=50.60 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=25.3
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 8 ILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 8 ~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
++..+.....+..-.+++.|++|+||||+++.+.+.
T Consensus 31 ~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 31 AMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred HHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHh
Confidence 333333333333446899999999999999999764
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.058 Score=49.63 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.+..-|.+.|++|+|||||++.+.+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56788999999999999999998764
|
|
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.03 Score=47.07 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~ 43 (329)
++|.|++|+||||++.++...
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 689999999999999998753
|
|
| >PHA00729 NTP-binding motif containing protein | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.062 Score=50.35 Aligned_cols=39 Identities=26% Similarity=0.336 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 2 FVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 2 ~~~~~~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.-+-.++..-+... .-.+|++.|.||+|||+|..++...
T Consensus 2 ~~~~k~~~~~l~~~---~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 2 LWLAKKIVSAYNNN---GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred chHHHHHHHHHhcC---CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 33445555555444 3358999999999999999998763
|
|
| >PRK13900 type IV secretion system ATPase VirB11; Provisional | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.14 Score=50.31 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=26.7
Q ss_pred HHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCC
Q psy2970 10 DWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQF 45 (329)
Q Consensus 10 ~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~ 45 (329)
++++... +.+.+|++.|.+|+|||||++.+...-.
T Consensus 151 ~~L~~~v-~~~~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 151 EFLEHAV-ISKKNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred HHHHHHH-HcCCcEEEECCCCCCHHHHHHHHHhhCC
Confidence 4444332 3568999999999999999999986443
|
|
| >PRK00625 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.032 Score=49.83 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
++|+++|.+||||||+.+.+...
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999653
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.034 Score=50.17 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
=.++++|++|+|||||++.+.+-.
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCc
Confidence 368999999999999999998753
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >KOG1487|consensus | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.084 Score=50.89 Aligned_cols=56 Identities=18% Similarity=0.190 Sum_probs=40.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCceeeeEE-EeeCceEEEEEEecCCCc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVGFNMR-KITKGNVTIKVWDIGGQP 76 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig~~~~-~i~~~~~~l~I~DtpG~e 76 (329)
-++-++|.|.+||||++..+.+-.-+ ..|.-|.-..+. .+.++.-++++.|+||..
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgii 117 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGII 117 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchh
Confidence 48899999999999999999875432 333333333332 245778889999999954
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.034 Score=49.97 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
+. .++++|++|+|||||++.+.+-
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCC
Confidence 35 8999999999999999999874
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14738 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.039 Score=50.12 Aligned_cols=25 Identities=12% Similarity=0.227 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
+..-|+|+|++|||||||++++...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4566889999999999999999754
|
|
| >PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.031 Score=48.12 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
-|.++|+.|+|||||++.+.+.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999763
|
|
| >PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.036 Score=52.38 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
+..++++|+|.+|||||+|+..++..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 56689999999999999999999854
|
This is thought to be an ATPase involved in viral DNA packaging []. |
| >PRK14531 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.035 Score=49.23 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.+|+++|+||+||||+.+++...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999653
|
|
| >PRK14737 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.034 Score=50.07 Aligned_cols=25 Identities=12% Similarity=0.266 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
..=|+|+|++|||||||++++....
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 3458999999999999999998753
|
|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.16 Score=52.11 Aligned_cols=39 Identities=23% Similarity=0.432 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCCC-ceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 6 NRILDWFKSLFWKE-EMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 6 ~~~~~~~~~~~~~k-~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
..+..|+....... .-.++|.|++|+||||+++.+...-
T Consensus 24 ~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 24 EQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred HHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 34455555432111 4568999999999999999997643
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.032 Score=52.28 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~ 44 (329)
-++++|++|||||||+|-+-+-+
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 58899999999999999886643
|
|
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.04 Score=49.18 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
+.--|+++|++|||||||++.+.+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4456999999999999999999874
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.034 Score=45.45 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=18.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
++--+++.|++|+|||++++++....
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence 34568899999999999999998743
|
|
| >smart00763 AAA_PrkA PrkA AAA domain | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.063 Score=53.55 Aligned_cols=38 Identities=26% Similarity=0.454 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcC---CCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 5 LNRILDWFKSLF---WKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 5 ~~~~~~~~~~~~---~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+.++.+|++... ..++-=++++|+||+|||||.+++..
T Consensus 60 i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~ 100 (361)
T smart00763 60 IERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKR 100 (361)
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 455566666543 22334479999999999999999975
|
This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain. |
| >TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.03 Score=48.18 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~ 43 (329)
|+++|++|+||||+.+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999998764
|
This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.04 Score=49.74 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
=.++++|++|+|||||++.+.+-.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998743
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.042 Score=49.35 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
=.+.++|+.|+|||||++.+.+-.
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368899999999999999998753
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.039 Score=48.88 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~ 44 (329)
.+.++|++|+|||||++.+.+-.
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999988743
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.047 Score=49.83 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
+..-++|.|++|||||||++++....
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc
Confidence 34568899999999999999998765
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.043 Score=48.97 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
=.+.++|++|+|||||++.+.+-.
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998743
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.043 Score=49.28 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
=.++++|++|+|||||++.+.+-
T Consensus 28 ~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 28 EFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36889999999999999999874
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 329 | ||||
| 2h18_A | 193 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 2e-63 | ||
| 2al7_A | 186 | Structure Of Human Adp-Ribosylation Factor-Like 10c | 2e-59 | ||
| 1zd9_A | 188 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 5e-58 | ||
| 3aq4_A | 184 | Molecular Insights Into Plant Cell Proliferation Di | 3e-20 | ||
| 1rrg_A | 181 | Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com | 4e-19 | ||
| 1hur_A | 180 | Human Adp-Ribosylation Factor 1 Complexed With Gdp, | 4e-19 | ||
| 2a5d_A | 175 | Structural Basis For The Activation Of Cholera Toxi | 4e-19 | ||
| 1e0s_A | 174 | Small G Protein Arf6-Gdp Length = 174 | 4e-19 | ||
| 3lrp_A | 181 | Crystal Structure Of Plasmodium Falciparum Adp-Ribo | 9e-19 | ||
| 2a5g_A | 175 | Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length | 3e-18 | ||
| 3lvr_E | 497 | The Crystal Structure Of Asap3 In Complex With Arf6 | 4e-18 | ||
| 3n5c_A | 162 | Crystal Structure Of Arf6delta13 Complexed With Gdp | 1e-17 | ||
| 3o47_A | 329 | Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le | 1e-17 | ||
| 4fme_C | 160 | Espg-Rab1-Arf6 Complex Length = 160 | 1e-17 | ||
| 2b6h_A | 192 | Structure Of Human Adp-Ribosylation Factor 5 Length | 1e-17 | ||
| 3vhx_A | 172 | The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi | 2e-17 | ||
| 2w83_A | 165 | Crystal Structure Of The Arf6 Gtpase In Complex Wit | 2e-17 | ||
| 3rd1_A | 178 | Structure Of An Adp Ribosylation Factor From Entamo | 1e-16 | ||
| 1z6x_A | 180 | Structure Of Human Adp-Ribosylation Factor 4 Length | 2e-16 | ||
| 2k5u_A | 181 | Solution Structure Of Myirstoylated Yeast Arf1 Prot | 3e-16 | ||
| 3pcr_B | 162 | Structure Of Espg-Arf6 Complex Length = 162 | 4e-16 | ||
| 1mr3_F | 181 | Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 | 7e-16 | ||
| 1re0_A | 164 | Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe | 1e-15 | ||
| 2ksq_A | 181 | The Myristoylated Yeast Arf1 In A Gtp And Bicelle B | 4e-15 | ||
| 1j2j_A | 166 | Crystal Structure Of Gga1 Gat N-terminal Region In | 1e-14 | ||
| 1ksh_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati | 5e-14 | ||
| 3doe_A | 192 | Complex Of Arl2 And Bart, Crystal Form 1 Length = 1 | 8e-14 | ||
| 3tjz_A | 164 | Crystal Structure Of Arf1 Bound To The GammaZETA-Co | 8e-14 | ||
| 1ksg_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt | 9e-14 | ||
| 1m2o_B | 190 | Crystal Structure Of The Sec23-Sar1 Complex Length | 2e-13 | ||
| 1r4a_A | 165 | Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac | 2e-13 | ||
| 1f6b_A | 198 | Crystal Structure Of Sar1-Gdp Complex Length = 198 | 8e-13 | ||
| 1moz_A | 183 | Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo | 9e-13 | ||
| 4dcn_A | 166 | Crystal Structure Analysis Of The Arfaptin2 Bar Dom | 1e-12 | ||
| 2fmx_A | 195 | An Open Conformation Of Switch I Revealed By Sar1-g | 4e-12 | ||
| 4gok_B | 169 | The Crystal Structure Of Arl2gppnhp In Complex With | 5e-12 | ||
| 2fa9_A | 189 | The Crystal Structure Of Sar1[h79g]-gdp Provides In | 7e-12 | ||
| 2qtv_B | 167 | Structure Of Sec23-Sar1 Complexed With The Active F | 9e-12 | ||
| 2h57_A | 190 | Crystal Structure Of Human Adp-Ribosylation Factor- | 1e-11 | ||
| 2gao_A | 208 | Crystal Structure Of Human Sar1a In Complex With Gd | 2e-11 | ||
| 1ksj_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme | 3e-11 | ||
| 4bas_A | 199 | Structure Of The Arl6 Bbs3 Small Gtpase From Trypan | 4e-11 | ||
| 4goj_A | 189 | The Crystal Structure Of Full Length Arl3gppnhp In | 9e-10 | ||
| 1fzq_A | 181 | Crystal Structure Of Murine Arl3-Gdp Length = 181 | 1e-09 | ||
| 3bh7_A | 164 | Crystal Structure Of The Rp2-Arl3 Complex Bound To | 2e-09 | ||
| 1z6y_A | 179 | Structure Of Human Adp-Ribosylation Factor-Like 5 L | 3e-09 | ||
| 1zj6_A | 187 | Crystal Structure Of Human Arl5 Length = 187 | 3e-09 | ||
| 2x77_A | 189 | Crystal Structure Of Leishmania Major Adp Ribosylat | 4e-09 | ||
| 1yzg_A | 179 | Structure Of Human Adp-ribosylation Factor-like 8 L | 5e-09 | ||
| 3bh6_A | 164 | Crystal Structure Of The Rp2-Arl3 Complex Bound To | 1e-08 | ||
| 2h16_A | 183 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 4e-08 | ||
| 2h17_A | 181 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 5e-08 | ||
| 1upt_A | 171 | Structure Of A Complex Of The Golgin-245 Grip Domai | 3e-07 | ||
| 2hup_A | 201 | Crystal Structure Of Human Rab43 In Complex With Gd | 2e-06 | ||
| 1byu_A | 216 | Canine Gdp-Ran Length = 216 | 5e-06 | ||
| 2bku_A | 177 | Kap95p:rangtp Complex Length = 177 | 8e-06 | ||
| 2rhd_A | 175 | Crystal Structure Of Cryptosporidium Parvum Small G | 1e-05 | ||
| 2ew1_A | 201 | Crystal Structure Of Rab30 In Complex With A Gtp An | 2e-05 | ||
| 2hxs_A | 178 | Crystal Structure Of Rab28a Gtpase In The Inactive | 2e-05 | ||
| 4i1o_A | 181 | Crystal Structure Of The Legionella Pneumophila Gap | 3e-05 | ||
| 4fmc_B | 171 | Espg-Rab1 Complex Length = 171 | 3e-05 | ||
| 3jza_A | 175 | Crystal Structure Of Human Rab1b In Complex With Th | 3e-05 | ||
| 4fmb_B | 171 | Vira-Rab1 Complex Structure Length = 171 | 3e-05 | ||
| 2wwx_A | 175 | Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra | 3e-05 | ||
| 4fmd_F | 164 | Espg-Rab1 Complex Structure At 3.05 A Length = 164 | 4e-05 | ||
| 3l0i_B | 199 | Complex Structure Of Sidm/drra With The Wild Type R | 4e-05 | ||
| 2fol_A | 191 | Crystal Structure Of Human Rab1a In Complex With Gd | 5e-05 | ||
| 4fmc_F | 117 | Espg-Rab1 Complex Length = 117 | 5e-05 | ||
| 3sfv_A | 181 | Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan | 5e-05 | ||
| 2o52_A | 200 | Crystal Structure Of Human Rab4b In Complex With Gd | 5e-05 | ||
| 3gj0_A | 221 | Crystal Structure Of Human Rangdp Length = 221 | 6e-05 | ||
| 1a2k_C | 216 | Gdpran-Ntf2 Complex Length = 216 | 6e-05 | ||
| 1qg2_A | 216 | Canine Gdp-Ran R76e Mutant Length = 216 | 6e-05 | ||
| 1rrp_A | 204 | Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = | 6e-05 | ||
| 1z06_A | 189 | Gppnhp-Bound Rab33 Gtpase Length = 189 | 6e-05 | ||
| 2g77_B | 198 | Crystal Structure Of Gyp1 Tbc Domain In Complex Wit | 6e-05 | ||
| 3ea5_A | 216 | Kap95p Binding Induces The Switch Loops Of Rangdp T | 6e-05 | ||
| 3tkl_A | 196 | Crystal Structure Of The Gtp-Bound Rab1a In Complex | 6e-05 | ||
| 1qbk_C | 216 | Structure Of The Karyopherin Beta2-ran Gppnhp Nucle | 6e-05 | ||
| 2p5s_A | 199 | Rab Domain Of Human Rasef In Complex With Gdp Lengt | 6e-05 | ||
| 3tw8_B | 181 | Gef Domain Of Dennd 1b In Complex With Rab Gtpase R | 7e-05 | ||
| 1wa5_A | 176 | Crystal Structure Of The Exportin Cse1p Complexed W | 8e-05 | ||
| 1ek0_A | 170 | Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17 | 8e-05 | ||
| 1yzk_A | 184 | Gppnhp Bound Rab11 Gtpase Length = 184 | 1e-04 | ||
| 1yzn_A | 185 | Gppnhp-Bound Ypt1p Gtpase Length = 185 | 1e-04 | ||
| 1qg4_A | 216 | Canine Gdp-Ran F72y Mutant Length = 216 | 1e-04 | ||
| 1oiv_A | 191 | X-Ray Structure Of The Small G Protein Rab11a In Co | 1e-04 | ||
| 3tso_A | 178 | Structure Of The Cancer Associated Rab25 Protein In | 2e-04 | ||
| 3dz8_A | 191 | Crystal Structure Of Human Rab3b Gtpase Bound With | 2e-04 | ||
| 2gf9_A | 189 | Crystal Structure Of Human Rab3d In Complex With Gd | 2e-04 | ||
| 1g17_A | 170 | Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma) | 2e-04 | ||
| 2bcg_Y | 206 | Structure Of Doubly Prenylated Ypt1:gdi Complex Len | 2e-04 | ||
| 1ukv_Y | 206 | Structure Of Rabgdp-Dissociation Inhibitor In Compl | 2e-04 | ||
| 3rab_A | 169 | Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | 2e-04 | ||
| 2f9l_A | 199 | 3d Structure Of Inactive Human Rab11b Gtpase Length | 2e-04 | ||
| 2oil_A | 193 | Crystal Structure Of Human Rab25 In Complex With Gd | 2e-04 | ||
| 2fg5_A | 192 | Crystal Structure Of Human Rab31 In Complex With A | 3e-04 | ||
| 1d5c_A | 162 | Crystal Structure Of Plasmodium Falciparum Rab6 Com | 3e-04 | ||
| 2hei_A | 179 | Crystal Structure Of Human Rab5b In Complex With Gd | 3e-04 | ||
| 2g6b_A | 180 | Crystal Structure Of Human Rab26 In Complex With A | 3e-04 | ||
| 1huq_A | 164 | 1.8a Crystal Structure Of The Monomeric Gtpase Rab5 | 3e-04 | ||
| 2eqb_A | 174 | Crystal Structure Of The Rab Gtpase Sec4p, The Sec2 | 4e-04 | ||
| 1tu4_A | 171 | Crystal Structure Of Rab5-Gdp Complex Length = 171 | 4e-04 | ||
| 1n6h_A | 170 | Crystal Structure Of Human Rab5a Length = 170 | 5e-04 | ||
| 1tu3_A | 171 | Crystal Structure Of Rab5 Complex With Rabaptin5 C- | 5e-04 | ||
| 3ran_A | 216 | Canine Gdp-Ran Q69l Mutant Length = 216 | 5e-04 | ||
| 3gj4_A | 221 | Crystal Structure Of Human Rangdp-Nup153znf3 Comple | 6e-04 | ||
| 1g16_A | 170 | Crystal Structure Of Sec4-Gdp Length = 170 | 6e-04 | ||
| 3cph_A | 213 | Crystal Structure Of Sec4 In Complex With Rab-Gdi L | 6e-04 | ||
| 3nby_C | 176 | Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea | 7e-04 | ||
| 3nc1_C | 182 | Crystal Structure Of The Crm1-Rangtp Complex Length | 7e-04 | ||
| 1n6r_A | 170 | Crystal Structure Of Human Rab5a A30l Mutant Comple | 8e-04 | ||
| 1z08_A | 170 | Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170 | 9e-04 | ||
| 2hv8_A | 172 | Crystal Structure Of Gtp-Bound Rab11 In Complex Wit | 9e-04 |
| >pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193 | Back alignment and structure |
|
| >pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186 | Back alignment and structure |
|
| >pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188 | Back alignment and structure |
|
| >pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184 | Back alignment and structure |
|
| >pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181 | Back alignment and structure |
|
| >pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180 | Back alignment and structure |
|
| >pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175 | Back alignment and structure |
|
| >pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174 | Back alignment and structure |
|
| >pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181 | Back alignment and structure |
|
| >pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175 | Back alignment and structure |
|
| >pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497 | Back alignment and structure |
|
| >pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 | Back alignment and structure |
|
| >pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160 | Back alignment and structure |
|
| >pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192 | Back alignment and structure |
|
| >pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172 | Back alignment and structure |
|
| >pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165 | Back alignment and structure |
|
| >pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178 | Back alignment and structure |
|
| >pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180 | Back alignment and structure |
|
| >pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181 | Back alignment and structure |
|
| >pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162 | Back alignment and structure |
|
| >pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181 | Back alignment and structure |
|
| >pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164 | Back alignment and structure |
|
| >pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181 | Back alignment and structure |
|
| >pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166 | Back alignment and structure |
|
| >pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186 | Back alignment and structure |
|
| >pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192 | Back alignment and structure |
|
| >pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164 | Back alignment and structure |
|
| >pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186 | Back alignment and structure |
|
| >pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex Length = 190 | Back alignment and structure |
|
| >pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165 | Back alignment and structure |
|
| >pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex Length = 198 | Back alignment and structure |
|
| >pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183 | Back alignment and structure |
|
| >pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166 | Back alignment and structure |
|
| >pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp Crystal Structure At Low Mg(2+) Length = 195 | Back alignment and structure |
|
| >pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169 | Back alignment and structure |
|
| >pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight Into The Coat-controlled Gtp Hydrolysis In The Disassembly Of Cop Ii Length = 189 | Back alignment and structure |
|
| >pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 167 | Back alignment and structure |
|
| >pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190 | Back alignment and structure |
|
| >pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp Length = 208 | Back alignment and structure |
|
| >pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186 | Back alignment and structure |
|
| >pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199 | Back alignment and structure |
|
| >pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189 | Back alignment and structure |
|
| >pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181 | Back alignment and structure |
|
| >pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164 | Back alignment and structure |
|
| >pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179 | Back alignment and structure |
|
| >pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187 | Back alignment and structure |
|
| >pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation Factor-Like 1. Length = 189 | Back alignment and structure |
|
| >pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179 | Back alignment and structure |
|
| >pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164 | Back alignment and structure |
|
| >pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183 | Back alignment and structure |
|
| >pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181 | Back alignment and structure |
|
| >pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171 | Back alignment and structure |
|
| >pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201 | Back alignment and structure |
|
| >pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216 | Back alignment and structure |
|
| >pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177 | Back alignment and structure |
|
| >pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175 | Back alignment and structure |
|
| >pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201 | Back alignment and structure |
|
| >pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178 | Back alignment and structure |
|
| >pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181 | Back alignment and structure |
|
| >pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171 | Back alignment and structure |
|
| >pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175 | Back alignment and structure |
|
| >pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171 | Back alignment and structure |
|
| >pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175 | Back alignment and structure |
|
| >pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164 | Back alignment and structure |
|
| >pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199 | Back alignment and structure |
|
| >pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117 | Back alignment and structure |
|
| >pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181 | Back alignment and structure |
|
| >pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200 | Back alignment and structure |
|
| >pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221 | Back alignment and structure |
|
| >pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216 | Back alignment and structure |
|
| >pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216 | Back alignment and structure |
|
| >pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204 | Back alignment and structure |
|
| >pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189 | Back alignment and structure |
|
| >pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198 | Back alignment and structure |
|
| >pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216 | Back alignment and structure |
|
| >pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196 | Back alignment and structure |
|
| >pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216 | Back alignment and structure |
|
| >pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199 | Back alignment and structure |
|
| >pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181 | Back alignment and structure |
|
| >pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176 | Back alignment and structure |
|
| >pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170 | Back alignment and structure |
|
| >pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184 | Back alignment and structure |
|
| >pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185 | Back alignment and structure |
|
| >pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216 | Back alignment and structure |
|
| >pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178 | Back alignment and structure |
|
| >pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189 | Back alignment and structure |
|
| >pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170 | Back alignment and structure |
|
| >pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206 | Back alignment and structure |
|
| >pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206 | Back alignment and structure |
|
| >pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | Back alignment and structure |
|
| >pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199 | Back alignment and structure |
|
| >pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193 | Back alignment and structure |
|
| >pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192 | Back alignment and structure |
|
| >pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179 | Back alignment and structure |
|
| >pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180 | Back alignment and structure |
|
| >pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164 | Back alignment and structure |
|
| >pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174 | Back alignment and structure |
|
| >pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171 | Back alignment and structure |
|
| >pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170 | Back alignment and structure |
|
| >pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171 | Back alignment and structure |
|
| >pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216 | Back alignment and structure |
|
| >pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221 | Back alignment and structure |
|
| >pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170 | Back alignment and structure |
|
| >pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213 | Back alignment and structure |
|
| >pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176 | Back alignment and structure |
|
| >pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182 | Back alignment and structure |
|
| >pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170 | Back alignment and structure |
|
| >pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188 | Back alignment and structure |
|---|
Score = 181 bits (462), Expect = 8e-57
Identities = 111/182 (60%), Positives = 125/182 (68%), Gaps = 41/182 (22%)
Query: 6 NRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNV 65
+ KEEMELTLVGLQ SGKTTFVNVIASGQF++DMIPTVGFNMRKITKGNV
Sbjct: 8 HHHSSGLVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNV 67
Query: 66 TIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMW 125
TIK+WDIGGQPRFRSMWERYCRGV+AIV+
Sbjct: 68 TIKLWDIGGQPRFRSMWERYCRGVSAIVY------------------------------- 96
Query: 126 LSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELI 185
MVDAAD +K+EAS+NELH L++KPQL GIP+LVLGNKRDLP ALDEKELI
Sbjct: 97 ----------MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELI 146
Query: 186 DR 187
++
Sbjct: 147 EK 148
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189 | Back alignment and structure |
|---|
Score = 173 bits (441), Expect = 1e-53
Identities = 44/187 (23%), Positives = 83/187 (44%), Gaps = 42/187 (22%)
Query: 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI 60
M L + L ++ + ++GL +GKT+ + + G +PTVG N+ +
Sbjct: 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVNLETL 61
Query: 61 TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGV 120
N++ +VWD+GGQ R W Y +A++
Sbjct: 62 QYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVI--------------------------- 94
Query: 121 SGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD 180
Y+VD+ D D++ +++EL+AL+++ +L +L+ NK+DLP+A
Sbjct: 95 --------------YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS 140
Query: 181 EKELIDR 187
E E+ ++
Sbjct: 141 EAEIAEQ 147
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190 | Back alignment and structure |
|---|
Score = 166 bits (424), Expect = 4e-51
Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 47/185 (25%)
Query: 8 ILDWFKSL-----FWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITK 62
I WF+ + W + +L +GL +GKTT ++++ + + + + PT ++
Sbjct: 6 IFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSEELAI 64
Query: 63 GNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSG 122
GN+ +D+GG + R +W+ Y VN IV
Sbjct: 65 GNIKFTTFDLGGHIQARRLWKDYFPEVNGIV----------------------------- 95
Query: 123 PMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEK 182
++VDAAD ++ + +R EL AL +L +P ++LGNK D PNA+ E
Sbjct: 96 ------------FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEA 143
Query: 183 ELIDR 187
EL
Sbjct: 144 ELRSA 148
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171 | Back alignment and structure |
|---|
Score = 165 bits (421), Expect = 5e-51
Identities = 42/173 (24%), Positives = 76/173 (43%), Gaps = 42/173 (24%)
Query: 15 LFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGG 74
EM + ++GL +GKTT + + G+ IPT+GFN+ +T N+ +VWD+GG
Sbjct: 2 SHMTREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNVETVTYKNLKFQVWDLGG 60
Query: 75 QPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIK 134
R W Y +A+++
Sbjct: 61 LTSIRPYWRCYYSNTDAVIY---------------------------------------- 80
Query: 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDR 187
+VD+ D D++ S++EL A++E+ +L ++V NK+D+ A+ E+ +
Sbjct: 81 -VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANS 132
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198 | Back alignment and structure |
|---|
Score = 166 bits (423), Expect = 6e-51
Identities = 50/229 (21%), Positives = 90/229 (39%), Gaps = 57/229 (24%)
Query: 1 MFVLLNRILDWFKSL-----FWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGF 55
M + + I F S+ +K+ +L +GL +GKTT ++++ + Q +PT+
Sbjct: 1 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHP 59
Query: 56 NMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEP 115
++T +T +D+GG + R +W+ Y +N IV+
Sbjct: 60 TSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVF--------------------- 98
Query: 116 VDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175
+VD AD ++L S+ EL +L+ + +PIL+LGNK D
Sbjct: 99 --------------------LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDR 138
Query: 176 PNALDEKELIDRIMIDFWITLTLLIRWCESFLHHFGSHPNWAVKWHTLP 224
P A+ E+ L + + T + L + P
Sbjct: 139 PEAISEERLREMFGLYGQTTGKGSVS-----LKELNARP-----LEVFM 177
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183 | Back alignment and structure |
|---|
Score = 154 bits (392), Expect = 2e-46
Identities = 43/187 (22%), Positives = 78/187 (41%), Gaps = 44/187 (23%)
Query: 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI 60
M + + + D +E+ + ++GL +GKTT + + G+ PT+GFN+ +
Sbjct: 1 MGNIFSSMFDKLWG--SNKELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIGFNVETL 57
Query: 61 TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGV 120
+ N+ + VWD+GGQ R W Y A++
Sbjct: 58 SYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVI--------------------------- 90
Query: 121 SGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD 180
++VD+ D D++ + ELH ++++ +L +LV NK+D P AL
Sbjct: 91 --------------FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALS 136
Query: 181 EKELIDR 187
E+
Sbjct: 137 ASEVSKE 143
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192 | Back alignment and structure |
|---|
Score = 154 bits (392), Expect = 2e-46
Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 42/177 (23%)
Query: 11 WFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVW 70
F +F K++M + +VGL +GKTT + + G+ IPT+GFN+ + N+ VW
Sbjct: 20 LFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNICFTVW 78
Query: 71 DIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLF 130
D+GGQ + R +W Y + ++
Sbjct: 79 DVGGQDKIRPLWRHYFQNTQGLI------------------------------------- 101
Query: 131 QLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDR 187
++VD+ D ++++ S +EL ++++ +L +LV NK+D+PNA+ EL D+
Sbjct: 102 ----FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDK 154
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181 | Back alignment and structure |
|---|
Score = 153 bits (390), Expect = 3e-46
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 44/182 (24%)
Query: 8 ILDWFKSLFW--KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNV 65
+L + L +E+ + L+GL +GKTT + +AS S + PT GFN++ +
Sbjct: 2 LLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIKSVQSQGF 60
Query: 66 TIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMW 125
+ VWDIGGQ + R W Y + +++
Sbjct: 61 KLNVWDIGGQRKIRPYWRSYFENTDILIY------------------------------- 89
Query: 126 LSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELI 185
++D+AD + E + EL L+E+ +L +P+L+ NK+DL A E+
Sbjct: 90 ----------VIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIA 139
Query: 186 DR 187
+
Sbjct: 140 EG 141
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 8e-45
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 44/175 (25%)
Query: 16 FWKEEMELTLVGLQCSGKTTFVNVIASGQF-SQDMIPTVGFNMRKITKGNVTIKVWDIGG 74
+E+ + +GL SGKTT +N + SQ+++PT+GF++ K +++ V+D+ G
Sbjct: 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSG 76
Query: 75 QPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIK 134
Q R+R++WE Y + AI+
Sbjct: 77 QGRYRNLWEHYYKEGQAII----------------------------------------- 95
Query: 135 YMVDAADTDKLEASRNELHALIEKPQLIG--IPILVLGNKRDLPNALDEKELIDR 187
+++D++D ++ ++ EL L+ P + IPIL NK DL +A+ ++
Sbjct: 96 FVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQL 150
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 4e-44
Identities = 42/181 (23%), Positives = 76/181 (41%), Gaps = 43/181 (23%)
Query: 8 ILDWFKSLFW-KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVT 66
+L K + + E+ L ++GL +GKTT + + PT+GFN++ +
Sbjct: 5 LLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDT-ISPTLGFNIKTLEHRGFK 63
Query: 67 IKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWL 126
+ +WD+GGQ RS W Y + ++W
Sbjct: 64 LNIWDVGGQKSLRSYWRNYFESTDGLIW-------------------------------- 91
Query: 127 SLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELID 186
+VD+AD +++ + EL +L+ + +L G +L+ NK+DLP AL + +
Sbjct: 92 ---------VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQE 142
Query: 187 R 187
Sbjct: 143 A 143
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187 | Back alignment and structure |
|---|
Score = 143 bits (364), Expect = 3e-42
Identities = 42/187 (22%), Positives = 72/187 (38%), Gaps = 46/187 (24%)
Query: 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI 60
M +L RI LF +E ++ +VGL +GKTT + + + PT+G N+ +I
Sbjct: 1 MGILFTRI----WRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSNVEEI 55
Query: 61 TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGV 120
N +WDIGGQ RS W Y ++
Sbjct: 56 VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVI--------------------------- 88
Query: 121 SGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD 180
+VD+ D +++ +R EL+ ++ L +L+ NK+D+ +
Sbjct: 89 --------------VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT 134
Query: 181 EKELIDR 187
E+
Sbjct: 135 VAEISQF 141
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164 | Back alignment and structure |
|---|
Score = 141 bits (359), Expect = 7e-42
Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 42/167 (25%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS 80
M + +VGL +GKTT + + G+ IPT+GFN+ + N++ VWD+GGQ + R
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRP 59
Query: 81 MWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAA 140
+W Y + ++ ++VD+
Sbjct: 60 LWRHYFQNTQGLI-----------------------------------------FVVDSN 78
Query: 141 DTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDR 187
D +++ +R EL ++ + +L +LV NK+DLPNA++ E+ D+
Sbjct: 79 DRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDK 125
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 4e-39
Identities = 36/172 (20%), Positives = 65/172 (37%), Gaps = 42/172 (24%)
Query: 16 FWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQ 75
+E ++ +VGL +GKTT + + + PT+G N+ +I N +WDIGGQ
Sbjct: 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSNVEEIVINNTRFLMWDIGGQ 75
Query: 76 PRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKY 135
RS W Y ++
Sbjct: 76 ESLRSSWNTYYTNTEFVI-----------------------------------------V 94
Query: 136 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDR 187
+VD+ D +++ +R EL+ ++ L +L+ NK+D+ + E+
Sbjct: 95 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQF 146
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 1e-29
Identities = 47/178 (26%), Positives = 83/178 (46%), Gaps = 42/178 (23%)
Query: 10 DWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKV 69
+ LF K+EM + +VGL +GKTT + + G+ IPT+GFN+ + N++ V
Sbjct: 155 PQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTV 213
Query: 70 WDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLL 129
WD+GGQ + R +W Y + +++
Sbjct: 214 WDVGGQDKIRPLWRHYFQNTQGLIF----------------------------------- 238
Query: 130 FQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDR 187
+VD+ D +++ +R EL ++ + +L +LV NK+DLPNA++ E+ D+
Sbjct: 239 ------VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDK 290
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 3e-28
Identities = 29/200 (14%), Positives = 59/200 (29%), Gaps = 61/200 (30%)
Query: 6 NRILDWFKSLF----------WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGF 55
+I W + + + + + G Q SGKT+ + ++ + + +
Sbjct: 24 RKISQWREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRP-TVVSQE- 81
Query: 56 NMRKITKGNVTIKVWDIGGQPRFRSMWERY----CRGVNAIVWTGGLYIVSKHIKRSAIL 111
+ + + D G + R Y + V ++
Sbjct: 82 PLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLI------------------ 123
Query: 112 YYEPVDLGVSGPMWLSLLFQLIKYMVDAA-DTDKLEASRNELHALIEKPQLI---GIPIL 167
+MVD+ D KL + L ++ + GI IL
Sbjct: 124 -----------------------FMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 160
Query: 168 VLGNKRDLPNALDEKELIDR 187
+ NK +L A ++ D
Sbjct: 161 IACNKSELFTARPPSKIKDA 180
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 2e-27
Identities = 27/176 (15%), Positives = 54/176 (30%), Gaps = 51/176 (28%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR 79
+ + + G Q SGKT+ + ++ + + + + + + D G + R
Sbjct: 12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQE-PLSAADYDGSGVTLVDFPGHVKLR 69
Query: 80 SMWERY----CRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKY 135
Y + V ++ +
Sbjct: 70 YKLSDYLKTRAKFVKGLI-----------------------------------------F 88
Query: 136 MVDAA-DTDKLEASRNELHALIEKPQLI---GIPILVLGNKRDLPNALDEKELIDR 187
MVD+ D KL + L ++ + GI IL+ NK +L A ++ D
Sbjct: 89 MVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDA 144
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 9e-26
Identities = 26/177 (14%), Positives = 58/177 (32%), Gaps = 49/177 (27%)
Query: 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGG 74
+ + VGL SGKT + +GQ+ ++ + N ++ + D+ G
Sbjct: 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRD-TQTSITDSSAIYKVNNNRGNSLTLIDLPG 63
Query: 75 QPRFR-SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLI 133
R + +R+ A+V
Sbjct: 64 HESLRFQLLDRFKSSARAVV---------------------------------------- 83
Query: 134 KYMVDAADTDK-LEASRNELHALIEKPQLI--GIPILVLGNKRDLPNALDEKELIDR 187
++VD+A + ++ L+ ++ + +L+ NK+D+ A K + +
Sbjct: 84 -FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQ 139
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198 | Back alignment and structure |
|---|
Score = 96.4 bits (240), Expect = 4e-24
Identities = 37/194 (19%), Positives = 64/194 (32%), Gaps = 64/194 (32%)
Query: 16 FWKEEMELTLV--GLQCSGKTTFVNVIASGQFSQDM----------IPTVGFNMRKITKG 63
F E+ +V G SGKTT + I S T+ F+ + G
Sbjct: 8 FANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIG 67
Query: 64 -----NVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDL 118
++ + GQ + + + RGV+ IV
Sbjct: 68 EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIV------------------------- 102
Query: 119 GVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIE-----KPQLIGIPILVLGNKR 173
++ D+A ++L A+ + + E L +PI++ NKR
Sbjct: 103 ----------------FVADSAP-NRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKR 145
Query: 174 DLPNALDEKELIDR 187
DLP+AL + +
Sbjct: 146 DLPDALPVEMVRAV 159
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196 | Back alignment and structure |
|---|
Score = 77.7 bits (191), Expect = 3e-17
Identities = 32/188 (17%), Positives = 55/188 (29%), Gaps = 52/188 (27%)
Query: 11 WFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQD---MIPTVGFNMRKIT-KGNVT 66
F + + L+GL+ SGK++ V+ + + T I+ V
Sbjct: 11 RENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVN 70
Query: 67 IKVWDIGGQPRFRSMW---ERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGP 123
++WD GQ F E RG A++
Sbjct: 71 FQIWDFPGQMDFFDPTFDYEMIFRGTGALI------------------------------ 100
Query: 124 MWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLI--GIPILVLGNKRDLPNALDE 181
Y++DA D + LH + K + + V +K D + +
Sbjct: 101 -----------YVIDA--QDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHK 147
Query: 182 KELIDRIM 189
E I
Sbjct: 148 IETQRDIH 155
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307 | Back alignment and structure |
|---|
Score = 65.8 bits (160), Expect = 2e-12
Identities = 31/176 (17%), Positives = 57/176 (32%), Gaps = 53/176 (30%)
Query: 25 LVGLQCSGKTTFVNVIASGQFSQD---MIPTVGFNMRKIT-KGNVTIKVWDIGGQPRF-- 78
L+G SGK++ ++I S + D + T+ + GN+T+ +WD GGQ F
Sbjct: 8 LMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFME 67
Query: 79 ---RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKY 135
+ + V ++
Sbjct: 68 NYFTKQKDHIFQMVQVLIH----------------------------------------- 86
Query: 136 MVDAADTDKLEASRNELHALIEKPQLI--GIPILVLGNKRDLPNALDEKELIDRIM 189
+ D T+ L+ +++ + I VL +K DL +EL +M
Sbjct: 87 VFDVESTEVLKDIE-IFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMM 141
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 3e-11
Identities = 36/159 (22%), Positives = 59/159 (37%), Gaps = 47/159 (29%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
L LVG +GKTTFV +G+F + + T+G + IK VWD GQ +F
Sbjct: 18 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 77
Query: 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVD 138
+ + Y + ++ V+ + Y+ V P W + +V
Sbjct: 78 GGLRDGYYIQAQCAII---MFDVTSRVT------YKNV------PNWH-------RDLVR 115
Query: 139 AADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN 177
+ IPI++ GNK D+ +
Sbjct: 116 VCE---------------------NIPIVLCGNKVDIKD 133
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 6e-11
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKIT-KGNVTIK--VWDIGGQPR 77
+ ++G SGKT+ A F + T+G F +R+IT GN+ + +WDIGGQ
Sbjct: 9 IVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTI 68
Query: 78 FRSMWERYCRGVNAIV 93
M ++Y G ++
Sbjct: 69 GGKMLDKYIYGAQGVL 84
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 2e-10
Identities = 31/160 (19%), Positives = 54/160 (33%), Gaps = 47/160 (29%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG---FNMRKITKGNVTIK--VWDIGGQPR 77
+ L+G GKTT++N + G+F ++ TVG + + IK VWD GQ +
Sbjct: 14 ICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEK 73
Query: 78 FRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMV 137
+ + Y G + + + V+ I + + W+ +
Sbjct: 74 KAVLKDVYYIGASGAIL---FFDVTSRIT------CQNL------ARWVK---EFQAV-- 113
Query: 138 DAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN 177
PI+V NK D+ N
Sbjct: 114 ---------VGNE-------------APIVVCANKIDIKN 131
|
| >3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 8e-10
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
L +G Q GKT+ + F T+G F + + + T++ +WD G RF
Sbjct: 19 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERF 78
Query: 79 RSMWERYCRGVNAIV 93
RS+ Y R V
Sbjct: 79 RSLIPSYIRDSTVAV 93
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 1e-09
Identities = 35/151 (23%), Positives = 57/151 (37%), Gaps = 44/151 (29%)
Query: 32 GKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSMWERYCR 87
GKT+ +N + +FS T+G F +++ + + +WD GQ RF+S+ + R
Sbjct: 20 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYR 79
Query: 88 GVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT-DKLE 146
G + V +V + V A +T L+
Sbjct: 80 GADCCV------LV---------------------------------FDVTAPNTFKTLD 100
Query: 147 ASRNELHALIEKPQLIGIPILVLGNKRDLPN 177
+ R+E P +VLGNK DL N
Sbjct: 101 SWRDEFLIQASPRDPENFPFVVLGNKIDLEN 131
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 1e-09
Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 9/83 (10%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDM--IPTVG--FNMRKIT---KGNVTIK--VW 70
M+L +VG SGKTT + + + S TVG I K + VW
Sbjct: 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61
Query: 71 DIGGQPRFRSMWERYCRGVNAIV 93
D G+ F S + +
Sbjct: 62 DFAGREEFYSTHPHFMTQRALYL 84
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 2e-09
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
L +G Q GKT+ + F T+G F + + + T++ +WD GQ RF
Sbjct: 17 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 76
Query: 79 RSMWERYCRGVNAIV 93
RS+ Y R V
Sbjct: 77 RSLIPSYIRDSTVAV 91
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 2e-09
Identities = 27/151 (17%), Positives = 52/151 (34%), Gaps = 44/151 (29%)
Query: 32 GKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSMWERYCR 87
GK++ +N + +F + T+G F + + + +WD GQ RFRS+ + R
Sbjct: 19 GKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYR 78
Query: 88 GVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT-DKLE 146
G + + + + VD + + L
Sbjct: 79 GSDCCL------LT---------------------------------FSVDDSQSFQNLS 99
Query: 147 ASRNELHALIEKPQLIGIPILVLGNKRDLPN 177
+ E + + P ++LGNK D+
Sbjct: 100 NWKKEFIYYADVKEPESFPFVILGNKIDISE 130
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 2e-09
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
+ L+G GK++ V F ++ PT+G F + + GN K +WD GQ RF
Sbjct: 26 VCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERF 85
Query: 79 RSMWERYCRGVNAIV 93
S+ Y RG A V
Sbjct: 86 HSLAPMYYRGSAAAV 100
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170 | Back alignment and structure |
|---|
Score = 54.8 bits (133), Expect = 3e-09
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
+ L+G C GKT+ V +F+ I T+G F +K+ G + +WD GQ RF
Sbjct: 9 VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF 68
Query: 79 RSMWERYCRGVNAIV 93
++ Y R N +
Sbjct: 69 HALGPIYYRDSNGAI 83
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170 | Back alignment and structure |
|---|
Score = 54.4 bits (132), Expect = 3e-09
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
L L+G GK++ V GQF + T+G F + + + T+K +WD GQ R+
Sbjct: 9 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY 68
Query: 79 RSMWERYCRGVNAIV 93
S+ Y RG A +
Sbjct: 69 HSLAPMYYRGAQAAI 83
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 3e-09
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
L L+G GK++ V S F+++ PT+G F +++T T+K +WD GQ RF
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERF 65
Query: 79 RSMWERYCRGVNAIV 93
S+ Y R A +
Sbjct: 66 ASLAPXYYRNAQAAL 80
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 3e-09
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
L L+G +GK++ V QF + T+G F + + + T+K +WD GQ R+
Sbjct: 15 LVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 74
Query: 79 RSMWERYCRGVNAIV 93
S+ Y RG A +
Sbjct: 75 HSLAPMYYRGAAAAI 89
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 4e-09
Identities = 33/153 (21%), Positives = 58/153 (37%), Gaps = 45/153 (29%)
Query: 32 GKTTFVNVIASGQFSQDMIPTVG--FNMRKIT-KGNVTIK--VWDIGGQPRFRSMWERYC 86
GKT+ ++ + ++SQ T+G F +++T G+ VWD GQ RF+S+ +
Sbjct: 20 GKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFY 79
Query: 87 RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT-DKL 145
RG + V +V Y V A + + +
Sbjct: 80 RGADCCV------LV---------------------------------YDVTNASSFENI 100
Query: 146 EASRNELHALIEKPQLIGIPILVLGNKRDLPNA 178
++ R+E P ++LGNK D +
Sbjct: 101 KSWRDEFLVHANVNSPETFPFVILGNKIDAEES 133
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 4e-09
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
+ L+G GKT ++ +FS D T+G F+ R + G +K +WD G R+
Sbjct: 28 VVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERY 87
Query: 79 RSMWERYCRGVNAIV 93
R++ Y RG +
Sbjct: 88 RAITSAYYRGAVGAL 102
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 4e-09
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
+ L+G GK+ ++ +F+ + T+G F R I TIK +WD GQ R+
Sbjct: 8 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY 67
Query: 79 RSMWERYCRGVNAIV 93
R + Y RG +
Sbjct: 68 RRITSAYYRGAVGAL 82
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 6e-09
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
+ L+G GK+ ++ +F+ D T+G F R + IK +WD GQ R+
Sbjct: 16 IVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERY 75
Query: 79 RSMWERYCRGVNAIV 93
R++ Y RG +
Sbjct: 76 RAITSAYYRGAVGAL 90
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 7e-09
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
+ L+G GK+ ++ +F+ + T+G F R I TIK +WD G R+
Sbjct: 32 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERY 91
Query: 79 RSMWERYCRGVNAIV 93
R++ Y RG +
Sbjct: 92 RAITSAYYRGAVGAL 106
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 7e-09
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
+ L+G GK++ + F ++ PT+G F + + N K +WD G RF
Sbjct: 9 VCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERF 68
Query: 79 RSMWERYCRGVNAIV 93
R++ Y RG A +
Sbjct: 69 RALAPMYYRGSAAAI 83
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 8e-09
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
+ L G GK++F+ + +F +++ T+G F M+ + +WD GQ RF
Sbjct: 31 IVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERF 90
Query: 79 RSMWERYCRGVNAIV 93
RS+ + Y R + ++
Sbjct: 91 RSIAKSYFRKADGVL 105
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 1e-08
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
L ++G GKT+F+ A F+ + TVG F ++ + + +K +WD GQ R+
Sbjct: 26 LLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERY 85
Query: 79 RSMWERYCRGVNAIV 93
R++ Y RG +
Sbjct: 86 RTITTAYYRGAMGFI 100
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 2e-08
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
+ L+G GK+ + +F+ I T+G F ++ + +K +WD GQ RF
Sbjct: 6 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERF 65
Query: 79 RSMWERYCRGVNAIV 93
R++ Y RG I+
Sbjct: 66 RTITTAYYRGAMGII 80
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 2e-08
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
++G GK+ ++ +F D T+G F R I IK +WD GQ RF
Sbjct: 18 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF 77
Query: 79 RSMWERYCRGVNAIV 93
R++ Y RG +
Sbjct: 78 RAVTRSYYRGAAGAL 92
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 3e-08
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
+ L+G GK+ + +F+ I T+G F ++ + +K +WD GQ RF
Sbjct: 23 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERF 82
Query: 79 RSMWERYCRGVNAIV 93
R++ Y RG I+
Sbjct: 83 RTITTAYYRGAMGII 97
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 3e-08
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
+ ++G GK++ + F ++ T+G F ++ I+ K +WD GQ RF
Sbjct: 18 ILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERF 77
Query: 79 RSMWERYCRGVNAIV 93
R++ Y RG ++
Sbjct: 78 RTLTPSYYRGAQGVI 92
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 3e-08
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
L LVG GKT V +G FS+ T+G F M+ + +K +WD GQ RF
Sbjct: 32 LVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERF 91
Query: 79 RSMWERYCRGVNAIV 93
R++ + Y R N +
Sbjct: 92 RTITQSYYRSANGAI 106
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168 | Back alignment and structure |
|---|
Score = 51.3 bits (124), Expect = 3e-08
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
+ +VG GK++ + G F++D T+G F R+I + ++ +WD GQ F
Sbjct: 8 MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF 67
Query: 79 RSMWERYCRGVNAIV 93
++ + Y RG A V
Sbjct: 68 DAITKAYYRGAQACV 82
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 3e-08
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
+ L+G GKT V G F T+G F ++ + +K +WD GQ RF
Sbjct: 29 IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF 88
Query: 79 RSMWERYCRGVNAIV 93
RS+ + Y R NA++
Sbjct: 89 RSITQSYYRSANALI 103
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 3e-08
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
L L+G GKT + + F+ I T+G F +R I IK +WD GQ RF
Sbjct: 11 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 70
Query: 79 RSMWERYCRGVNAIV 93
R++ Y RG I+
Sbjct: 71 RTITTAYYRGAMGIM 85
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 4e-08
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
+ ++G GKT+F+ A F+ + TVG F ++ I + + IK +WD G R+
Sbjct: 11 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERY 70
Query: 79 RSMWERYCRGVNAIV 93
R++ Y RG +
Sbjct: 71 RTITTAYYRGAMGFI 85
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 4e-08
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
L ++G GK++ + A FS I T+G F +R + +K +WD GQ RF
Sbjct: 12 LLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERF 71
Query: 79 RSMWERYCRGVNAIV 93
R++ Y RG + ++
Sbjct: 72 RTITSTYYRGTHGVI 86
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 4e-08
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
L L+G GK+ + A +++ I T+G F +R I TIK +WD GQ RF
Sbjct: 36 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 95
Query: 79 RSMWERYCRGVNAIV 93
R++ Y RG + I+
Sbjct: 96 RTITSSYYRGAHGII 110
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 5e-08
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 25 LVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRS 80
++G +GK+ ++ +F D T+G F + I G +K +WD GQ RFRS
Sbjct: 15 VIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRS 74
Query: 81 MWERYCRGVNAIV 93
+ Y RG +
Sbjct: 75 VTRSYYRGAAGAL 87
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 5e-08
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 32 GKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSMWERYCR 87
GK+ + A +++ I T+G F +R I TIK +WD GQ RFR++ Y R
Sbjct: 28 GKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYR 87
Query: 88 GVNAIV 93
G + I+
Sbjct: 88 GAHGII 93
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 5e-08
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
++G +GK+ ++ +F QD T+G F R + G T+K +WD GQ RF
Sbjct: 28 FLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERF 87
Query: 79 RSMWERYCRGVNAIV 93
RS+ Y RG +
Sbjct: 88 RSVTRSYYRGAAGAL 102
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 6e-08
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
L L+G GKT+F+ A F+ + TVG F ++ + + + IK +WD GQ R+
Sbjct: 25 LLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERY 84
Query: 79 RSMWERYCRGVNAIV 93
R++ Y RG +
Sbjct: 85 RTITTAYYRGAMGFL 99
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 7e-08
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 32 GKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSMWERYCR 87
GK+ + +F T+G F R + IK +WD GQ FRS+ Y R
Sbjct: 33 GKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYR 92
Query: 88 GVNAIV 93
G +
Sbjct: 93 GAAGAL 98
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 8e-08
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 32 GKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFRSMWERYCR 87
GK+ + + ++ D I T+G F ++ + T+K +WD GQ RFR++ Y R
Sbjct: 20 GKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYR 79
Query: 88 GVNAIV 93
G + I+
Sbjct: 80 GSHGII 85
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 9e-08
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
+ ++G + GKT+ + F + TVG F ++ + I+ +WD GQ RF
Sbjct: 29 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 88
Query: 79 RSMWERYCRGVNAIV 93
S+ Y R I+
Sbjct: 89 NSITSAYYRSAKGII 103
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 3e-07
Identities = 29/173 (16%), Positives = 56/173 (32%), Gaps = 52/173 (30%)
Query: 25 LVGLQCSGKTTFVNVIASGQFSQD---MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSM 81
L+G++ GK++ V+ D + T ++ + + V ++ GQ +
Sbjct: 4 LMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF-STLIDLAVMELPGQLNYFEP 62
Query: 82 W---ERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVD 138
ER + V A+V Y++D
Sbjct: 63 SYDSERLFKSVGALV-----------------------------------------YVID 81
Query: 139 AADTDKLEASRNELHALIEKPQLI--GIPILVLGNKRDLPNALDEKELIDRIM 189
+ D+ + L +IE + I I VL +K D + + + IM
Sbjct: 82 S--QDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIM 132
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 5e-07
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
+ ++G GKT +G+F T+G F R + IK +WD GQ RF
Sbjct: 23 IIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERF 82
Query: 79 R-SMWERYCRGVNAIV 93
R SM + Y R V+A+V
Sbjct: 83 RKSMVQHYYRNVHAVV 98
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 5e-07
Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 12/86 (13%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKIT------------KGNVTI 67
E+++ L+G +GKT+ + + F T G N+
Sbjct: 41 EIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLF 100
Query: 68 KVWDIGGQPRFRSMWERYCRGVNAIV 93
WD GGQ + + + + +
Sbjct: 101 HFWDFGGQEIMHASHQFFMTRSSVYM 126
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 1e-06
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFN---MRKITKGNVTIKVWDIGGQPRFR 79
+ +VG GKT ++V A F ++ +PTV N +I + + +WD G P +
Sbjct: 10 IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYD 69
Query: 80 SMWERYCRGVNAIV 93
++ +A++
Sbjct: 70 NVRPLSYPDSDAVL 83
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 1e-06
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 25 LVGLQCSGKTTFVNVIASGQFSQD-MIPTVG--FNMRKITKGNVTIK--VWDIGGQPRFR 79
LVG GKT + G F I TVG F + + V +K +WD GQ RFR
Sbjct: 15 LVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR 74
Query: 80 SMWERYCRGVNAIV 93
S+ Y R +A++
Sbjct: 75 SVTHAYYRDAHALL 88
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 3e-06
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Query: 23 LTLVGLQCSGKTTFVN--VIASGQFSQDMIPTVG--FNMRKITKGNVTIKV----WDIGG 74
+ +VG GK+ ++ +F +D T G + +T + T+ V D G
Sbjct: 23 VAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAG 82
Query: 75 QPRFRSMWERYCRGVNAIV 93
++ +Y GV +
Sbjct: 83 SDLYKEQISQYWNGVYYAI 101
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 7e-06
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 14/76 (18%)
Query: 32 GKTTFVNVIASGQFSQDMIPTVG--FNMRKIT----------KGNVTIK--VWDIGGQPR 77
GKTTF+ +F+ I TVG F +++ + +WD GQ R
Sbjct: 37 GKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQER 96
Query: 78 FRSMWERYCRGVNAIV 93
FRS+ + R +
Sbjct: 97 FRSLTTAFFRDAMGFL 112
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 7e-06
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGG 74
+ ++ +VG GKT + + F + IPTV N + V + +WD G
Sbjct: 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 87
Query: 75 QPRFRSM 81
Q + +
Sbjct: 88 QEDYDRL 94
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 1e-05
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFN---MRKITKGNVTIKVWDIGGQPRFR 79
L LVG GKT + V+A + + +PTV N + + V + +WD G P +
Sbjct: 30 LVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYD 89
Query: 80 SMWERYCRGVNAIV 93
++ +A++
Sbjct: 90 NVRPLCYSDSDAVL 103
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 2e-05
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Query: 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFN---MRKITKGNVTIKVWDIGG 74
+ ++ +VG GKT + + F + IPTV N + V + +WD G
Sbjct: 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 62
Query: 75 QPRFRSMWERYCRGVNAIV 93
Q + + + +
Sbjct: 63 QEDYDRLRPLSYPQTDVSL 81
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 2e-05
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 14/76 (18%)
Query: 32 GKTTFVNVIASGQFSQDMIPTVG--FNMRKIT----------KGNVTIK--VWDIGGQPR 77
GKT+ + G+F+ I TVG F +++ I +WD G R
Sbjct: 23 GKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER 82
Query: 78 FRSMWERYCRGVNAIV 93
FRS+ + R +
Sbjct: 83 FRSLTTAFFRDAMGFL 98
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} Length = 227 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 2e-05
Identities = 13/122 (10%), Positives = 25/122 (20%), Gaps = 45/122 (36%)
Query: 70 WDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLL 129
G + ++ C V+ +
Sbjct: 107 DQQGSRYSVIPQIQKVCEVVDGFI------------------------------------ 130
Query: 130 FQLIKYMVDAADTDKLEASRNELHALI---EKPQLIGIPILVLG-NKRDLPNALDEKELI 185
Y+ +A + E H + G P+LVL + + L
Sbjct: 131 -----YVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLA 185
Query: 186 DR 187
Sbjct: 186 HE 187
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 3e-05
Identities = 32/163 (19%), Positives = 55/163 (33%), Gaps = 53/163 (32%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQPRFR 79
+ + G GK++ V G F + IPTV R++ + T+++ D G +F
Sbjct: 6 VAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP 65
Query: 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDA 139
+M +A + +V Y +
Sbjct: 66 AMQRLSISKGHAFI------LV---------------------------------YSI-- 84
Query: 140 ADTDKLEASRNELHALIE-----KPQLIGIPILVLGNKRDLPN 177
T + S EL + E K + IPI+++GNK D
Sbjct: 85 --TSR--QSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 123
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 3e-05
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQPRFR 79
+ + G GK++ V G F IPT+ R++ + T+++ D G +F
Sbjct: 11 VVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP 70
Query: 80 SMWERYCRGVNAIV 93
+M +A +
Sbjct: 71 AMQRLSISKGHAFI 84
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 5e-05
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFN---MRKITKGNVTIKVWDIGGQPRFR 79
L +VG GKT + V + QF + +PTV N ++ V + +WD GQ +
Sbjct: 28 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYD 87
Query: 80 S 80
Sbjct: 88 R 88
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 7e-05
Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGG 74
K+ +++ +VG GKT + + G+ +PTV N + K + +WD G
Sbjct: 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAG 80
Query: 75 QPRFRSMWERYCRGVNAIV 93
Q + + + ++
Sbjct: 81 QEEYDRLRPLSYADSDVVL 99
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 9e-05
Identities = 28/162 (17%), Positives = 50/162 (30%), Gaps = 52/162 (32%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQPRFR 79
+ +VG GK+ +F +D PT + RK + V I + D GQ +
Sbjct: 17 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA 76
Query: 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDA 139
++ + Y R + V + +
Sbjct: 77 AIRDNYFRSGEGFL------CV---------------------------------FSI-- 95
Query: 140 ADTDKLEASRNELHALIEKPQLI----GIPILVLGNKRDLPN 177
T+ S E+ + +P L++GNK DL +
Sbjct: 96 --TEM--ESFAATADFREQILRVKEDENVPFLLVGNKSDLED 133
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 9e-05
Identities = 34/162 (20%), Positives = 53/162 (32%), Gaps = 52/162 (32%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQPRFR 79
L +VG GK+ F D PT+ + K T+ + + V D GQ F
Sbjct: 21 LVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFS 80
Query: 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDA 139
+M E+Y R + + IV Y V
Sbjct: 81 AMREQYMRTGDGFL------IV---------------------------------YSV-- 99
Query: 140 ADTDKLEASRNELHALIEKPQLI----GIPILVLGNKRDLPN 177
TDK AS + + + P++++ NK DL +
Sbjct: 100 --TDK--ASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 1e-04
Identities = 28/162 (17%), Positives = 50/162 (30%), Gaps = 52/162 (32%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQPRFR 79
+ +VG GK+ +F +D PT + RK + V I + D GQ +
Sbjct: 21 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA 80
Query: 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDA 139
++ + Y R + V + +
Sbjct: 81 AIRDNYFRSGEGFL------CV---------------------------------FSI-- 99
Query: 140 ADTDKLEASRNELHALIEKPQLI----GIPILVLGNKRDLPN 177
T+ S E+ + +P L++GNK DL +
Sbjct: 100 --TEM--ESFAATADFREQILRVKEDENVPFLLVGNKSDLED 137
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 1e-04
Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFN---MRKITKGNVTIKVWDIGGQPRFR 79
VG GKT + S F D +PTV N + V + +WD GQ +
Sbjct: 11 CVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYN 70
Query: 80 SM 81
+
Sbjct: 71 RL 72
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 1e-04
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFR 79
L +VG GKT + V + +F + +PTV N ++ V + +WD GQ +
Sbjct: 28 LVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYD 87
Query: 80 SM 81
+
Sbjct: 88 RL 89
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 2e-04
Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQPRFR 79
+ ++G + GK++ GQF PT+ K+ N +++ D GQ +
Sbjct: 9 IAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYS 68
Query: 80 SMWERYCRGVNAIV 93
+ Y +N +
Sbjct: 69 IFPQTYSIDINGYI 82
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166 | Back alignment and structure |
|---|
Score = 40.5 bits (96), Expect = 2e-04
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITK---GNVTIKVWDIGGQPRFR 79
L +VG GK+ + F + PT+ + RK + + D GQ +
Sbjct: 6 LVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS 65
Query: 80 SMWERYCRGVNAIV 93
+M ++Y R +
Sbjct: 66 AMRDQYMRTGEGFL 79
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 2e-04
Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 5/76 (6%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
+ LVG GK+T Q R+I + V+DI Q
Sbjct: 5 VMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDA 64
Query: 79 RS-MWERYCRGVNAIV 93
+ + + +A +
Sbjct: 65 GGWLQDHCLQTGDAFL 80
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 2e-04
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKIT-KGN-VTIKVWDIGGQPR 77
E+++ +VG SGK+ V+ +G + Q+ P G ++I G + + D GG P
Sbjct: 20 ELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPE 79
Query: 78 FRSMWERYCRGVNAIV 93
++ V+A+V
Sbjct: 80 L-----QFAAWVDAVV 90
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 2e-04
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITK---GNVTIKVWDIGGQPRFR 79
L +VG GK+ + F + PT+ + RK + + D GQ +
Sbjct: 7 LVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS 66
Query: 80 SMWERYCRGVNAIV 93
+M ++Y R +
Sbjct: 67 AMRDQYMRTGEGFL 80
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 2e-04
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITK---GNVTIKVWDIGGQPRFR 79
L +VG GK+ + F + PT+ + RK + + D GQ +
Sbjct: 24 LVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS 83
Query: 80 SMWERYCRGVNAIV 93
+M ++Y R +
Sbjct: 84 AMRDQYMRTGEGFL 97
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 2e-04
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 11 WFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGN---VTI 67
+F+ + ++ ++G +C GKT+ + G+FS+ PTV KI +
Sbjct: 15 YFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHL 74
Query: 68 KVWDIGGQPRFRSMWERYCRGVNAIV 93
+ D GQ + + + GV+ V
Sbjct: 75 HLVDTAGQDEYSILPYSFIIGVHGYV 100
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167 | Back alignment and structure |
|---|
Score = 40.1 bits (95), Expect = 2e-04
Identities = 24/162 (14%), Positives = 55/162 (33%), Gaps = 52/162 (32%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG-FNMRKITKGNVTIK--VWDIGGQPRFR 79
+ ++G GK+ +G F + PT+ F ++I + + D G +F
Sbjct: 6 VVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA 65
Query: 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDA 139
SM + Y + + +V Y +
Sbjct: 66 SMRDLYIKNGQGFI------LV---------------------------------YSL-- 84
Query: 140 ADTDKLEASRNELHALIEKPQLI----GIPILVLGNKRDLPN 177
++ S ++ + ++ + +P++++GNK DL +
Sbjct: 85 --VNQ--QSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 2e-04
Identities = 51/354 (14%), Positives = 102/354 (28%), Gaps = 85/354 (24%)
Query: 4 LLNRILD--WFKSLFWKEEMEL---TLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR 58
LL +L + L L+ + T F++ + S D
Sbjct: 247 LL--VLLNVQNAKAW--NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM-TLTPD 301
Query: 59 KITKG----NVTIKVWDI-----GGQPR-----------FRSMWERYCRGVNAIVWTGGL 98
+ K + + D+ PR + W+ + + VN
Sbjct: 302 E-VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW-KHVN-------C 352
Query: 99 YIVSKHIKRS-AIL-------YYE-----PVDLGVSGPMWLSLLFQLIKYMVDAADTDKL 145
++ I+ S +L ++ P + + LSL++ + +KL
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP-TILLSLIWFDVIKSDVMVVVNKL 411
Query: 146 EASRNELHALIEK---PQLIGIPILVLGNKRDLPNALD-EKELIDRIMI----DFWITLT 197
L+EK I IP + L K L N + ++D I D
Sbjct: 412 HKYS-----LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD---D 463
Query: 198 LLIRWCES-FLHHFGSH---PNWAVKWHTLPKLLF-LSLVDSYVSSGASDYTEEAGCTIS 252
L+ + + F H G H + + ++ + ++ + +
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT 523
Query: 253 ILMLSWYSVTVRQHWSYIIMYIVHKPLAYRLECNMSRVSTTTHSSCTYFSPFQN 306
+ L +Y YI + P RL + + S + +
Sbjct: 524 LQQLKFYK-------PYI---CDNDPKYERLVNAILDFLPKIEENL-ICSKYTD 566
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 3e-04
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGN-VTIKVWDIGGQPRFR 79
+ LVG GKT+ + V A G F + PTV + + KG V + +WD GQ +
Sbjct: 37 VVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYD 96
Query: 80 SM 81
+
Sbjct: 97 RL 98
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 3e-04
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQPRFR 79
LVG GKT+ V + + + IPT N + + V +++ D GQ F
Sbjct: 23 CVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFD 82
Query: 80 SM 81
+
Sbjct: 83 KL 84
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 3e-04
Identities = 28/162 (17%), Positives = 50/162 (30%), Gaps = 52/162 (32%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQPRFR 79
+ +VG GK+ +F +D PT + RK + V I + D GQ +
Sbjct: 7 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA 66
Query: 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDA 139
++ + Y R + V + +
Sbjct: 67 AIRDNYFRSGEGFL------CV---------------------------------FSI-- 85
Query: 140 ADTDKLEASRNELHALIEKPQLI----GIPILVLGNKRDLPN 177
T+ S E+ + +P L++GNK DL +
Sbjct: 86 --TEM--ESFAATADFREQILRVKEDENVPFLLVGNKSDLED 123
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 3e-04
Identities = 29/162 (17%), Positives = 53/162 (32%), Gaps = 52/162 (32%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG-FNMRKITKGNVTIK--VWDIGGQPRFR 79
L +VG GK+ F D PT+ + + + + + D GQ F
Sbjct: 12 LVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFG 71
Query: 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDA 139
+M E+Y R + + +V + +
Sbjct: 72 AMREQYMRAGHGFL------LV---------------------------------FAI-- 90
Query: 140 ADTDKLEASRNELHALIEKPQLI----GIPILVLGNKRDLPN 177
D+ S NE+ L + + P++++GNK DL +
Sbjct: 91 --NDR--QSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES 128
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 3e-04
Identities = 29/165 (17%), Positives = 52/165 (31%), Gaps = 55/165 (33%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQP 76
E+ L ++G + +GK+ + +F + P + + V ++V D
Sbjct: 21 EVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLD 80
Query: 77 RFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYM 136
R+ ERY +A + +V Y
Sbjct: 81 TPRNC-ERYLNWAHAFL------VV---------------------------------YS 100
Query: 137 VDAADTDKLEASRNELHALIE------KPQLIGIPILVLGNKRDL 175
V + S + + +E K IP L+LGNK D+
Sbjct: 101 V----DSR--QSFDSSSSYLELLALHAKETQRSIPALLLGNKLDM 139
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 3e-04
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 32 GKTTFVNVIASGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQPRFRSMWERYCRG 88
GK+ G F + PT+ + RK + + +++ D G +F +M + Y +
Sbjct: 15 GKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKN 74
Query: 89 VNAIV 93
Sbjct: 75 GQGFA 79
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 3e-04
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFN---MRKITKGNVTIKVWDIGGQPRFR 79
+ +VG GKT ++V A F ++ +PTV N +I + + +WD G P +
Sbjct: 31 IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYD 90
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 5e-04
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 5/76 (6%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIK--VWDIGGQPRF 78
+ LVG GK+T Q P R+I + V+DI Q
Sbjct: 26 VMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDA 85
Query: 79 RS-MWERYCRGVNAIV 93
+ + + +A +
Sbjct: 86 GGWLRDHCLQTGDAFL 101
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178 | Back alignment and structure |
|---|
Score = 38.8 bits (91), Expect = 8e-04
Identities = 12/77 (15%), Positives = 31/77 (40%), Gaps = 9/77 (11%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQP 76
E+ L ++G SGK++ ++ +G + T +K + + + + G P
Sbjct: 7 ELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTESEQYKKEMLVDGQTHLVLIREEAGAP 65
Query: 77 RFRSMWERYCRGVNAIV 93
++ +A++
Sbjct: 66 DA-----KFSGWADAVI 77
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 329 | |||
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 99.97 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 99.96 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 99.95 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 99.95 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 99.95 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 99.95 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.95 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.95 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 99.95 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.95 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 99.95 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.95 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 99.95 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.95 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 99.94 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 99.94 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.94 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.94 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.94 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 99.94 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.94 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 99.94 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.94 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.94 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.94 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.94 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.94 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.94 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.94 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.94 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.94 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.94 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.94 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.94 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.94 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.94 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 99.94 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.94 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.94 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.94 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.94 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.93 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.93 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.93 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.93 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.93 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.93 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 99.93 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.93 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.93 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.93 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.93 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.93 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.93 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.93 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.93 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.93 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.93 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.93 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.93 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.93 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.93 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.93 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.93 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.93 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.93 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.93 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.93 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.93 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.93 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.93 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.93 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.93 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.93 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.93 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.93 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.93 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.93 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.93 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.92 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.92 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.92 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.92 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.92 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.92 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.92 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.92 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.92 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.92 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.91 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.91 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.91 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.91 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.91 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.91 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.91 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.91 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.9 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.83 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.89 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.89 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.89 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.89 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.88 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.88 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.87 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.87 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.87 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.87 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.86 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.85 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.85 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.85 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.84 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.84 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.83 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.83 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.83 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 99.82 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 99.82 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.82 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.82 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.82 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.81 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 99.8 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.8 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.79 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.79 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.78 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 99.77 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 99.76 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 99.75 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.74 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.74 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.74 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.73 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.72 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.72 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.71 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.71 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.7 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.7 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.69 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.69 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.68 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.67 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.67 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.66 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.66 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.66 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.65 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.65 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.65 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.65 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.64 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.64 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.63 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.63 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.63 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.63 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.63 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.63 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.62 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.62 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.61 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.6 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.59 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.59 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.59 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.59 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.58 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.58 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.55 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.54 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.54 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.53 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.53 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.51 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.5 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.5 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.49 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.49 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.49 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.48 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.47 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.45 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.45 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.42 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.41 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.4 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.39 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.38 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.36 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.32 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.29 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 99.28 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.21 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.19 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 99.16 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.14 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.08 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.07 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.02 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 98.96 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 98.81 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 98.81 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.79 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.77 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.73 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 98.7 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 98.62 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 98.59 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 98.57 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.44 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 98.26 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 98.22 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 98.14 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.12 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.06 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.0 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 97.88 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 97.76 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 97.71 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 97.7 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 97.65 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 97.6 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 97.51 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.31 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.27 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 97.15 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 97.07 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 96.87 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 96.8 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 96.77 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 96.71 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 96.64 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 96.57 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 96.56 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 96.25 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 96.2 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 96.14 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 96.1 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 96.03 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 96.0 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 95.98 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 95.87 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 95.85 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 95.77 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 95.7 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 95.63 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 95.59 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 95.56 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 95.52 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 95.52 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 95.51 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 95.49 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 95.47 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 95.39 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 95.37 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 95.36 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 95.36 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 95.33 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 95.32 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 95.32 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 95.31 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 95.29 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 95.28 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 95.22 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 95.21 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 95.21 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 95.2 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 95.2 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 95.17 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 95.16 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 95.16 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 95.14 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 95.1 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 95.09 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 95.05 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 95.04 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 94.95 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 94.94 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 94.92 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 94.88 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 94.88 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 94.88 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 94.86 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 94.84 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 94.84 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 94.84 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 94.81 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 94.79 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 94.78 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 94.77 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 94.77 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 94.77 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 94.74 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 94.73 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 94.71 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 94.71 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 94.69 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 94.68 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 94.67 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 94.67 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 94.64 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 94.61 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 94.61 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 94.58 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 94.55 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 94.54 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 94.54 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 94.51 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 94.45 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 94.45 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 94.44 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 94.44 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 94.43 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 94.4 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 94.39 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 94.36 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 94.36 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 94.35 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 94.34 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 94.32 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 94.31 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 94.3 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 94.29 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 94.29 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 94.28 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 94.27 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 94.26 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 94.25 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.24 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 94.24 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 94.23 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 94.23 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 94.22 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 94.2 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 94.2 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 94.19 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 94.17 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 94.16 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 94.16 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 94.15 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 94.13 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 94.13 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 94.12 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 94.11 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 94.09 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 94.08 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 94.08 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 94.05 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 94.04 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 94.04 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 94.03 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 94.03 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 94.02 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 94.01 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 94.01 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 94.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 93.97 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 93.96 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 93.95 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 93.92 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 93.91 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 93.9 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 93.9 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 93.85 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 93.81 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 93.79 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 93.76 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 93.72 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 93.7 | |
| 3fwy_A | 314 | Light-independent protochlorophyllide reductase I | 93.69 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 93.62 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 93.61 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 93.58 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 93.53 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.52 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 93.51 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 93.49 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 93.48 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 93.44 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 93.43 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 93.39 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 93.38 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 93.33 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 93.32 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 93.23 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 93.2 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 93.2 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 93.15 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 93.15 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 93.14 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 93.12 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 93.11 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 93.04 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 93.03 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 93.02 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 93.02 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 93.01 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 93.01 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 92.99 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 92.94 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 92.93 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 92.91 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 92.89 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 92.88 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 92.82 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 92.82 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 92.81 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 92.81 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 92.81 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 92.78 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 92.76 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 92.75 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 92.74 | |
| 4ido_A | 457 | Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE | 92.7 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 92.7 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 92.67 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 92.66 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 92.5 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 92.41 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 92.39 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 92.38 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 92.37 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 92.25 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 92.24 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 92.23 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 92.18 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 92.13 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 92.11 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 92.08 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 92.07 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 91.98 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 91.94 | |
| 1u0j_A | 267 | DNA replication protein; AAA+ protein, P-loop atpa | 91.92 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 91.9 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 91.84 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 91.79 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 91.74 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 91.66 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 91.66 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 91.64 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 91.53 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 91.52 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 91.5 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 91.46 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 91.34 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 91.29 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 91.21 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 90.86 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 90.8 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 90.79 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 90.78 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 90.78 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 90.77 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 90.7 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 90.68 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 90.61 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 90.6 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 90.58 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 90.56 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 90.55 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 90.47 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 90.47 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 90.41 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 90.35 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 90.33 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 90.22 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 90.19 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 90.17 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 90.15 | |
| 2oze_A | 298 | ORF delta'; para, walker type atpases, DNA segrega | 90.06 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 90.06 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 89.98 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 89.97 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 89.9 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 89.88 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 89.86 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 89.8 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 89.65 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 89.64 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 89.63 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 89.62 | |
| 2chq_A | 319 | Replication factor C small subunit; DNA-binding pr | 89.46 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 89.43 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 89.38 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 89.36 | |
| 1um8_A | 376 | ATP-dependent CLP protease ATP-binding subunit CL; | 89.3 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 89.21 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 89.16 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 89.14 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 89.08 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 89.0 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 89.0 | |
| 2a5y_B | 549 | CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis | 88.97 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 88.96 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 88.9 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 88.9 |
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-31 Score=242.96 Aligned_cols=151 Identities=19% Similarity=0.354 Sum_probs=125.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
.+++||+|+|++|||||||+++|..+.|...+.||+|.++.. +++..++++||||+|+++|+.+++.|++++++++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 367999999999999999999999999999999999977643 4677899999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||+++++||+++..|+..+.+.. ..++|++|||||+
T Consensus 91 -----------------------------------------lv~di~~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~ 128 (216)
T 4dkx_A 91 -----------------------------------------VVYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKT 128 (216)
T ss_dssp -----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECT
T ss_pred -----------------------------------------EEeecchhHHHHHHHHHHHHHHHhc-CCCCeEEEEeecc
Confidence 9999999999999999999987643 3679999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|+.+. .++++++++++++|+||||+++.+++++++.+
T Consensus 129 Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i 170 (216)
T 4dkx_A 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 170 (216)
T ss_dssp TCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred chHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHH
Confidence 99764 67899999999999999999977777766555
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-28 Score=208.71 Aligned_cols=165 Identities=25% Similarity=0.502 Sum_probs=131.6
Q ss_pred ChHHHHHHHHHHHhcCC-CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCcccc
Q psy2970 1 MFVLLNRILDWFKSLFW-KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR 79 (329)
Q Consensus 1 m~~~~~~~~~~~~~~~~-~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~ 79 (329)
|||+++ ++++++. ++.+||+++|++|||||||++++.+++ ...+.||++.....+..+...+.+|||||+++++
T Consensus 2 ~mg~~~----~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~ 76 (186)
T 1ksh_A 2 SMGLLT----ILKKMKQKERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 76 (186)
T ss_dssp -------------------CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHH
T ss_pred ccchhH----HHHhhcccCCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceEEEEECCEEEEEEECCCCHhHH
Confidence 666554 4555565 789999999999999999999999988 6678899998887777788999999999999999
Q ss_pred chHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC
Q psy2970 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP 159 (329)
Q Consensus 80 ~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~ 159 (329)
..+..+++++|+++ +|+|++++++++++..|+.++++..
T Consensus 77 ~~~~~~~~~~d~ii-----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~ 115 (186)
T 1ksh_A 77 SYWRNYFESTDGLI-----------------------------------------WVVDSADRQRMQDCQRELQSLLVEE 115 (186)
T ss_dssp TTGGGGCTTCSEEE-----------------------------------------EEEETTCGGGHHHHHHHHHHHHTCG
T ss_pred HHHHHHhcCCCEEE-----------------------------------------EEEECcCHHHHHHHHHHHHHHHhCh
Confidence 99999999999999 9999999999999999999998765
Q ss_pred cCCCCcEEEEEEcCCCCChhhHHHHHHHh--------CCcEEEEeccchHHHHHHhhhhc
Q psy2970 160 QLIGIPILVLGNKRDLPNALDEKELIDRI--------MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 160 ~~~~iPIiLVgNK~Dl~~~~e~~~l~~~~--------~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
...++|+++|+||+|+.++.+.+++.+.+ +++++++||+++.+.+++++.+.
T Consensus 116 ~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 175 (186)
T 1ksh_A 116 RLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLL 175 (186)
T ss_dssp GGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred hcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHH
Confidence 55789999999999998765555555443 35799999999777777776553
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=8.4e-28 Score=207.50 Aligned_cols=164 Identities=27% Similarity=0.445 Sum_probs=134.1
Q ss_pred ChHHHHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccc
Q psy2970 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS 80 (329)
Q Consensus 1 m~~~~~~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~ 80 (329)
|.+++.+++. ++.++.+||+++|++|||||||++++.++++. .+.||++.....+..++..+.+|||||+++++.
T Consensus 1 m~~~~~~~~~----~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 75 (187)
T 1zj6_A 1 MGILFTRIWR----LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEIVINNTRFLMWDIGGQESLRS 75 (187)
T ss_dssp -CHHHHHHHH----HHTTSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCEEEEETTEEEEEEECCC----CG
T ss_pred CchHHHHHHH----hcCCCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceEEEEECCEEEEEEECCCCHhHHH
Confidence 6778888776 34578999999999999999999999998887 678898877777777789999999999999999
Q ss_pred hHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc
Q psy2970 81 MWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ 160 (329)
Q Consensus 81 ~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~ 160 (329)
++..+++++|+++ +|||++++++|+....|+.++.+...
T Consensus 76 ~~~~~~~~~d~ii-----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~ 114 (187)
T 1zj6_A 76 SWNTYYTNTEFVI-----------------------------------------VVVDSTDRERISVTREELYKMLAHED 114 (187)
T ss_dssp GGHHHHTTCCEEE-----------------------------------------EEEETTCTTTHHHHHHHHHHHHTSGG
T ss_pred HHHHHhcCCCEEE-----------------------------------------EEEeCCCHHHHHHHHHHHHHHHhchh
Confidence 9999999999999 99999999999999999999987644
Q ss_pred CCCCcEEEEEEcCCCCChhhHHHHHHH--------hCCcEEEEeccchHHHHHHhhhh
Q psy2970 161 LIGIPILVLGNKRDLPNALDEKELIDR--------IMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 161 ~~~iPIiLVgNK~Dl~~~~e~~~l~~~--------~~~~~~etSAk~~~~~~~~l~~i 210 (329)
..++|+++|+||+|+.++.+.+++.+. .+++++++||+++.+.+++++.+
T Consensus 115 ~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 172 (187)
T 1zj6_A 115 LRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 172 (187)
T ss_dssp GTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred hCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHH
Confidence 578999999999999875333333332 34589999999977777777655
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.2e-28 Score=208.26 Aligned_cols=168 Identities=26% Similarity=0.467 Sum_probs=140.1
Q ss_pred ChHHHHHHHHHHHhcCC-CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCcccc
Q psy2970 1 MFVLLNRILDWFKSLFW-KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR 79 (329)
Q Consensus 1 m~~~~~~~~~~~~~~~~-~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~ 79 (329)
|++++++++.|++. |. ++++||+++|++|||||||++++.++++. .+.||++.....+..+...+.+|||||+++++
T Consensus 3 m~~~~~~~~~~l~~-f~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~ 80 (189)
T 2x77_A 3 MGAWLASLKQTLGL-LPADRKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGVNLETLQYKNISFEVWDLGGQTGVR 80 (189)
T ss_dssp ---CCSCHHHHHHT-SCTTSCEEEEEEEETTSSHHHHHHHTCCSCCE-EECSSTTCCEEEEEETTEEEEEEEECCSSSSC
T ss_pred hHHHHHHHHHHhhh-ccCCCceEEEEECCCCCCHHHHHHHHHcCCCC-CcCCCCceEEEEEEECCEEEEEEECCCCHhHH
Confidence 56677777777765 45 78999999999999999999999988875 46788888777777788999999999999999
Q ss_pred chHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC
Q psy2970 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP 159 (329)
Q Consensus 80 ~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~ 159 (329)
..+..+++++|+++ +|+|++++++++....++.+++...
T Consensus 81 ~~~~~~~~~~d~ii-----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~ 119 (189)
T 2x77_A 81 PYWRCYFSDTDAVI-----------------------------------------YVVDSTDRDRMGVAKHELYALLDED 119 (189)
T ss_dssp CCCSSSSTTCCEEE-----------------------------------------EEEETTCCTTHHHHHHHHHHHHTCS
T ss_pred HHHHHHhhcCCEEE-----------------------------------------EEEeCCCHHHHHHHHHHHHHHHhhh
Confidence 99999999999999 9999999999999999999998765
Q ss_pred cCCCCcEEEEEEcCCCCChhhHHHHHHHhC--------CcEEEEeccchHHHHHHhhhhc
Q psy2970 160 QLIGIPILVLGNKRDLPNALDEKELIDRIM--------IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 160 ~~~~iPIiLVgNK~Dl~~~~e~~~l~~~~~--------~~~~etSAk~~~~~~~~l~~i~ 211 (329)
...++|+++|+||+|+.++.+.+++.+.++ ++++++||+++.+.+++++.+.
T Consensus 120 ~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 179 (189)
T 2x77_A 120 ELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLV 179 (189)
T ss_dssp TTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred hcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHH
Confidence 567899999999999987655455555443 4799999999777777776553
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-27 Score=202.62 Aligned_cols=166 Identities=27% Similarity=0.521 Sum_probs=135.5
Q ss_pred ChHHHHHHHHHHHhcCC-CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCcccc
Q psy2970 1 MFVLLNRILDWFKSLFW-KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR 79 (329)
Q Consensus 1 m~~~~~~~~~~~~~~~~-~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~ 79 (329)
|.+++++++ +.++. ++++||+++|++|||||||++++.++++ ..+.||++.....+..++..+.+|||||+++++
T Consensus 1 mg~~~~~~~---~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 76 (183)
T 1moz_A 1 MGNIFSSMF---DKLWGSNKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIR 76 (183)
T ss_dssp -CHHHHHHH---GGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCEEEEEETTEEEEEEEEC----CC
T ss_pred CchHHHHHH---HHhcCCCCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccceEEEEECCEEEEEEECCCCHhHH
Confidence 566766654 55666 7899999999999999999999998887 567889887777777778999999999999999
Q ss_pred chHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC
Q psy2970 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP 159 (329)
Q Consensus 80 ~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~ 159 (329)
..+..+++++|+++ +|+|++++++++.+..|+.++.+..
T Consensus 77 ~~~~~~~~~~d~ii-----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~ 115 (183)
T 1moz_A 77 PYWRCYYADTAAVI-----------------------------------------FVVDSTDKDRMSTASKELHLMLQEE 115 (183)
T ss_dssp TTGGGTTTTEEEEE-----------------------------------------EEEETTCTTTHHHHHHHHHHHTTSS
T ss_pred HHHHHHhccCCEEE-----------------------------------------EEEECCCHHHHHHHHHHHHHHHcCh
Confidence 99999999999999 9999999999999999999998765
Q ss_pred cCCCCcEEEEEEcCCCCChhhHHHHHHHhC--------CcEEEEeccchHHHHHHhhhhc
Q psy2970 160 QLIGIPILVLGNKRDLPNALDEKELIDRIM--------IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 160 ~~~~iPIiLVgNK~Dl~~~~e~~~l~~~~~--------~~~~etSAk~~~~~~~~l~~i~ 211 (329)
...++|+++|+||+|+.++.+.+++.+.++ .+++++||+++.+.+++++.+.
T Consensus 116 ~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 175 (183)
T 1moz_A 116 ELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLI 175 (183)
T ss_dssp TTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHH
T ss_pred hhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHH
Confidence 557899999999999987655555555543 3699999999877777776553
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-27 Score=205.81 Aligned_cols=167 Identities=28% Similarity=0.569 Sum_probs=128.4
Q ss_pred ChHHHHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccc
Q psy2970 1 MFVLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS 80 (329)
Q Consensus 1 m~~~~~~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~ 80 (329)
||+++.++++.+. +..+++||+++|++|||||||++++.++.+. .+.||++.....+..+++.+.+|||||+++++.
T Consensus 6 ~~~~~~~~l~~~~--~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 82 (190)
T 1m2o_B 6 IFGWFRDVLASLG--LWNKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSEELAIGNIKFTTFDLGGHIQARR 82 (190)
T ss_dssp --------------------CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCEEEEEEETTEEEEEEECCCSGGGTT
T ss_pred HHHHHHHHHHHhh--ccCCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCCeEEEEECCEEEEEEECCCCHHHHH
Confidence 5666666665443 3467899999999999999999999998875 567888887777776779999999999999999
Q ss_pred hHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc
Q psy2970 81 MWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ 160 (329)
Q Consensus 81 ~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~ 160 (329)
++..+++++|+++ +|||++++++|++...|+.++.+...
T Consensus 83 ~~~~~~~~~d~~i-----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~ 121 (190)
T 1m2o_B 83 LWKDYFPEVNGIV-----------------------------------------FLVDAADPERFDEARVELDALFNIAE 121 (190)
T ss_dssp SGGGGCTTCCEEE-----------------------------------------EEEETTCGGGHHHHHHHHHHHHTCGG
T ss_pred HHHHHHhcCCEEE-----------------------------------------EEEECCChHHHHHHHHHHHHHHcchh
Confidence 9999999999999 99999999999999999999987655
Q ss_pred CCCCcEEEEEEcCCCCChhhHHHHHHHh---------------CCcEEEEeccchHHHHHHhhhhc
Q psy2970 161 LIGIPILVLGNKRDLPNALDEKELIDRI---------------MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 161 ~~~iPIiLVgNK~Dl~~~~e~~~l~~~~---------------~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
..++|+++|+||+|+.++...+++.+.+ +++++++||+++.+.+++++.+.
T Consensus 122 ~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 187 (190)
T 1m2o_B 122 LKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 187 (190)
T ss_dssp GTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHH
T ss_pred hcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHH
Confidence 5789999999999998754444444443 35799999999888888776553
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.3e-27 Score=200.28 Aligned_cols=153 Identities=18% Similarity=0.295 Sum_probs=132.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
.+.+||+++|++|||||||++++.++.+...+.||++..+.. +++..+.+.+|||||++++..++..+++.+|+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i- 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI- 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE-
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE-
Confidence 467999999999999999999999988888888998877643 4566689999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++++++++.+..|+.++.+.....++|+++|+||+|
T Consensus 83 ----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 122 (181)
T 3t5g_A 83 ----------------------------------------LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD 122 (181)
T ss_dssp ----------------------------------------EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTT
T ss_pred ----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 9999999999999999999988765567899999999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.+. .++++++++++++++++||+++.+.+++++.+.
T Consensus 123 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 164 (181)
T 3t5g_A 123 LHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 164 (181)
T ss_dssp CTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHH
T ss_pred chhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Confidence 9643 568889999999999999999888888776653
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=193.41 Aligned_cols=152 Identities=17% Similarity=0.306 Sum_probs=132.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
+++||+++|++|||||||++++.++.+...+.+|++..+.. +++....+.+|||||++++..++..+++.+|+++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i-- 79 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI-- 79 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE--
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE--
Confidence 46899999999999999999999999887788888765432 4566778999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++.+++.+..|+.++.+.....++|+++|+||+|+
T Consensus 80 ---------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 120 (167)
T 1kao_A 80 ---------------------------------------LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL 120 (167)
T ss_dssp ---------------------------------------EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGG
T ss_pred ---------------------------------------EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcc
Confidence 99999999999999999998877555568999999999998
Q ss_pred CCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 176 PNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 176 ~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.+. .+.++++++++++++++||+++.+.+++++.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 161 (167)
T 1kao_A 121 ESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161 (167)
T ss_dssp GGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHH
Confidence 653 457788999999999999999888888876653
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-27 Score=207.03 Aligned_cols=154 Identities=27% Similarity=0.529 Sum_probs=122.3
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 16 FWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 16 ~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
+..+++||+++|++|||||||++++.++++. .+.||++.....+..+++.+.+|||||+++++.++..+++++|+++
T Consensus 21 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i-- 97 (198)
T 1f6b_A 21 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIV-- 97 (198)
T ss_dssp CTTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEE--
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEE--
Confidence 4577899999999999999999999998875 5678888777777666799999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++++|++...|+.++++.....++|+++|+||+|+
T Consensus 98 ---------------------------------------~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 138 (198)
T 1f6b_A 98 ---------------------------------------FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDR 138 (198)
T ss_dssp ---------------------------------------EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTS
T ss_pred ---------------------------------------EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCc
Confidence 99999999999999999999987655578999999999999
Q ss_pred CCh---hhHHHHHHH-----------------hCCcEEEEeccchHHHHHHhhhhc
Q psy2970 176 PNA---LDEKELIDR-----------------IMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 176 ~~~---~e~~~l~~~-----------------~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.++ +++.++.+. .+.++++|||+++.+.+++++.+.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~ 194 (198)
T 1f6b_A 139 PEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 194 (198)
T ss_dssp TTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHH
T ss_pred cccCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHH
Confidence 864 333333332 235799999999888888876654
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.1e-27 Score=195.38 Aligned_cols=151 Identities=16% Similarity=0.278 Sum_probs=132.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
+++||+++|++|||||||++++.++.+...+.||++..+.. ++.+.+.+.+|||||++++..++..+++++|+++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i-- 79 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA-- 79 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE--
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE--
Confidence 46899999999999999999999999888888999877654 4667889999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++++++.+..|+..+.+.....++|+++|+||+|+
T Consensus 80 ---------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 120 (167)
T 1c1y_A 80 ---------------------------------------LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL 120 (167)
T ss_dssp ---------------------------------------EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTC
T ss_pred ---------------------------------------EEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccc
Confidence 99999999999999999888876544568999999999999
Q ss_pred CCh-----hhHHHHHHHh-CCcEEEEeccchHHHHHHhhhh
Q psy2970 176 PNA-----LDEKELIDRI-MIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 176 ~~~-----~e~~~l~~~~-~~~~~etSAk~~~~~~~~l~~i 210 (329)
.++ .+++++++++ +.+++++||+++.+.+++++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (167)
T 1c1y_A 121 EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL 161 (167)
T ss_dssp GGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHH
Confidence 653 4577888888 7999999999987778777655
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.9e-27 Score=202.30 Aligned_cols=155 Identities=74% Similarity=1.092 Sum_probs=135.9
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 16 FWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 16 ~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
+.++.+||+++|++|||||||++++.++.+...+.||++..+..++.+.+.+.+|||||++++..++..+++++|+++
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii-- 95 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV-- 95 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEE--
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEE--
Confidence 456789999999999999999999999999888899999999888888999999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++++++.+..|+.++++.....++|+++|+||+|+
T Consensus 96 ---------------------------------------~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 136 (188)
T 1zd9_A 96 ---------------------------------------YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL 136 (188)
T ss_dssp ---------------------------------------EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTS
T ss_pred ---------------------------------------EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCC
Confidence 99999999999999999999987655578999999999999
Q ss_pred CChhhHHHHHHHhC--------CcEEEEeccchHHHHHHhhhhc
Q psy2970 176 PNALDEKELIDRIM--------IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 176 ~~~~e~~~l~~~~~--------~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.+..+.+++.+.++ ++++++||+++.+.+++++.+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~ 180 (188)
T 1zd9_A 137 PGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 180 (188)
T ss_dssp TTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred ccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHH
Confidence 87655555555543 4699999999877888776654
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=197.32 Aligned_cols=153 Identities=20% Similarity=0.315 Sum_probs=131.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
++++||+++|++|||||||++++.++.+...+.+|++..+.. +++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i- 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL- 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE-
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE-
Confidence 468999999999999999999999999887888888765543 4667788999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++++++++.+..|+..+.......++|+++|+||+|
T Consensus 81 ----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D 120 (189)
T 4dsu_A 81 ----------------------------------------CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCD 120 (189)
T ss_dssp ----------------------------------------EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTT
T ss_pred ----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcc
Confidence 9999999999999999999888755567899999999999
Q ss_pred CCCh----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 175 LPNA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 175 l~~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.+. .+++++++.++++++++||+++.+.+++++.+.
T Consensus 121 l~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 161 (189)
T 4dsu_A 121 LPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV 161 (189)
T ss_dssp SSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred CcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9753 567889999999999999999777777776553
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-27 Score=205.36 Aligned_cols=159 Identities=30% Similarity=0.585 Sum_probs=133.3
Q ss_pred HHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhcc
Q psy2970 10 DWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGV 89 (329)
Q Consensus 10 ~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~a 89 (329)
.++++++.++++||+++|++|||||||++++.++++. .+.||++.....++.+.+.+.+|||||+++++.++..+++++
T Consensus 19 ~~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 97 (192)
T 2b6h_A 19 SLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNT 97 (192)
T ss_dssp CGGGGTTTTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTC
T ss_pred HHHHHhccCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccC
Confidence 3566777889999999999999999999999998876 467898877777888889999999999999999999999999
Q ss_pred ceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEE
Q psy2970 90 NAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVL 169 (329)
Q Consensus 90 d~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLV 169 (329)
|+++ +|||++++++|+.+..|+.++.......++|+++|
T Consensus 98 d~ii-----------------------------------------lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv 136 (192)
T 2b6h_A 98 QGLI-----------------------------------------FVVDSNDRERVQESADELQKMLQEDELRDAVLLVF 136 (192)
T ss_dssp CEEE-----------------------------------------EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEE
T ss_pred CEEE-----------------------------------------EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEE
Confidence 9999 99999999999999999999987655678999999
Q ss_pred EEcCCCCChhhHHHHHHHhC--------CcEEEEeccchHHHHHHhhhh
Q psy2970 170 GNKRDLPNALDEKELIDRIM--------IDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 170 gNK~Dl~~~~e~~~l~~~~~--------~~~~etSAk~~~~~~~~l~~i 210 (329)
+||+|+.+..+.+++.+.++ ++++++||+++.+.+++++.+
T Consensus 137 ~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 185 (192)
T 2b6h_A 137 ANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWL 185 (192)
T ss_dssp EECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHH
T ss_pred EECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHH
Confidence 99999988755666666655 369999999987777777655
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=198.17 Aligned_cols=153 Identities=21% Similarity=0.250 Sum_probs=133.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
..+.+||+++|++|||||||++++.++.+...+.+|++..+.. +++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 94 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 3467999999999999999999999999888888998876643 4567788999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++|+.+..|+..+.+.....++|+++|+||+
T Consensus 95 -----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 133 (183)
T 3kkq_A 95 -----------------------------------------IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKV 133 (183)
T ss_dssp -----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECT
T ss_pred -----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECC
Confidence 999999999999999999988765445789999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEecc-chHHHHHHhhhh
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTL-LIRWCESFLHHF 210 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk-~~~~~~~~l~~i 210 (329)
|+.+. .++++++++++++++++||+ ++.+.+++++.+
T Consensus 134 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l 176 (183)
T 3kkq_A 134 DLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL 176 (183)
T ss_dssp TCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHH
T ss_pred CchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHH
Confidence 98753 56888999999999999999 876677766554
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=200.91 Aligned_cols=159 Identities=29% Similarity=0.553 Sum_probs=135.2
Q ss_pred HHHhcCC--CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhc
Q psy2970 11 WFKSLFW--KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRG 88 (329)
Q Consensus 11 ~~~~~~~--~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ 88 (329)
++++++. ++.+||+++|++|||||||++++.++.+. .+.||+|.....+..+++.+.+|||||++.++..+..++++
T Consensus 5 ~~~~~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 83 (181)
T 1fzq_A 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFEN 83 (181)
T ss_dssp HHHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTT
T ss_pred HHHHHhccCCCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCC
Confidence 4566665 67899999999999999999999988764 56788887777777778999999999999999999999999
Q ss_pred cceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEE
Q psy2970 89 VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILV 168 (329)
Q Consensus 89 ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiL 168 (329)
+|+++ +|||++++++|+....|+.++++.....++|+++
T Consensus 84 ~~~~i-----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piil 122 (181)
T 1fzq_A 84 TDILI-----------------------------------------YVIDSADRKRFEETGQELTELLEEEKLSCVPVLI 122 (181)
T ss_dssp CSEEE-----------------------------------------EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEE
T ss_pred CCEEE-----------------------------------------EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEE
Confidence 99999 9999999999999999999887765557899999
Q ss_pred EEEcCCCCChhhHHHHHHHhC--------CcEEEEeccchHHHHHHhhhhc
Q psy2970 169 LGNKRDLPNALDEKELIDRIM--------IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 169 VgNK~Dl~~~~e~~~l~~~~~--------~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+||+|+.++...+++.+.++ ++++++||+++.+.+++++.+.
T Consensus 123 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 173 (181)
T 1fzq_A 123 FANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVC 173 (181)
T ss_dssp EEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred EEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHH
Confidence 999999987655555655543 4699999999888888776654
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=194.11 Aligned_cols=149 Identities=30% Similarity=0.593 Sum_probs=129.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceee
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYI 100 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~ 100 (329)
+||+++|++|||||||++++.++.+. .+.||++.....++.+.+.+.+|||||+++++.++..+++++|+++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i------- 72 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI------- 72 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS-CCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEE-------
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC-cccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEE-------
Confidence 58999999999999999999998876 4688999877778888899999999999999999999999999999
Q ss_pred ehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhh
Q psy2970 101 VSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD 180 (329)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e 180 (329)
+|||++++++|+....|+.++.......++|+++|+||+|+.++.+
T Consensus 73 ----------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 118 (164)
T 1r8s_A 73 ----------------------------------FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 118 (164)
T ss_dssp ----------------------------------EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC
T ss_pred ----------------------------------EEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCC
Confidence 9999999999999999999988765567899999999999987655
Q ss_pred HHHHHHHhC--------CcEEEEeccchHHHHHHhhhhc
Q psy2970 181 EKELIDRIM--------IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 181 ~~~l~~~~~--------~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.+++.+.++ ++++++||+++.+.+++++.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 157 (164)
T 1r8s_A 119 AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLS 157 (164)
T ss_dssp HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHH
T ss_pred HHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHH
Confidence 555655554 4699999999877777776553
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-26 Score=202.10 Aligned_cols=154 Identities=19% Similarity=0.319 Sum_probs=130.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
..+.+||+++|++|||||||++++.++.+...+.+|++..+.. +++..+.+.+|||||++++..++..+++.+|+++
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 100 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV 100 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence 4578999999999999999999999999988888999877644 3567789999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++++.+..|+..+.......++|+++|+||+
T Consensus 101 -----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 139 (201)
T 3oes_A 101 -----------------------------------------LVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKA 139 (201)
T ss_dssp -----------------------------------------EEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECT
T ss_pred -----------------------------------------EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 999999999999999999999876556789999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.+. .+++++++.++++++++||+++.+.+++++.+.
T Consensus 140 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 182 (201)
T 3oes_A 140 DLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVI 182 (201)
T ss_dssp TCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHH
T ss_pred cCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHH
Confidence 98643 567889999999999999999888888876654
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-26 Score=192.93 Aligned_cols=151 Identities=19% Similarity=0.313 Sum_probs=129.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
+.+||+++|++|||||||++++.++.+...+.+|++..+.. ++++.+.+.+|||||++++..++..+++.+|+++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i-- 80 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL-- 80 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE--
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE--
Confidence 57999999999999999999999999887888888876653 4566789999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++++++.+..|+.++.+.....++|+++|+||+|+
T Consensus 81 ---------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 121 (168)
T 1u8z_A 81 ---------------------------------------CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 121 (168)
T ss_dssp ---------------------------------------EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGG
T ss_pred ---------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccc
Confidence 99999999999999999998877544468999999999999
Q ss_pred CCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 176 PNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 176 ~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
.+. .++++++++++++++++||+++.+.+++++.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T 1u8z_A 122 EDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161 (168)
T ss_dssp GGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred cccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence 653 56778889999999999999977777777654
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-26 Score=200.86 Aligned_cols=151 Identities=13% Similarity=0.217 Sum_probs=129.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
.++.+||+++|++|||||||++++.++.+...+.||++..+.. +++..+.+.+|||||++++..++..+++++|+++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence 4567999999999999999999999999988889999987764 4567788999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHH-HHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEAS-RNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~-~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+|||++++++|+.+ ..|+..+... ..++|+++|+||
T Consensus 100 -----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK 136 (194)
T 3reg_A 100 -----------------------------------------LCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLK 136 (194)
T ss_dssp -----------------------------------------EEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEEC
T ss_pred -----------------------------------------EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEC
Confidence 99999999999997 5566555433 367999999999
Q ss_pred CCCCCh-------hhHHHHHHHhCCc-EEEEeccchHHHHHHhhhh
Q psy2970 173 RDLPNA-------LDEKELIDRIMID-FWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 173 ~Dl~~~-------~e~~~l~~~~~~~-~~etSAk~~~~~~~~l~~i 210 (329)
+|+.++ .++++++++++++ ++++||+++.+.+++++.+
T Consensus 137 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 182 (194)
T 3reg_A 137 VDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKS 182 (194)
T ss_dssp GGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHH
T ss_pred hhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHH
Confidence 998642 5688899999998 9999999977777777655
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-26 Score=192.49 Aligned_cols=151 Identities=29% Similarity=0.571 Sum_probs=130.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~ 97 (329)
++.+||+++|++|||||||++++.++.+. .+.||++.....+..+...+.+|||||+++++..+..+++++|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii---- 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVI---- 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEE----
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEE----
Confidence 56799999999999999999999998875 5678999888777777899999999999999999999999999999
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN 177 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~ 177 (329)
+|||++++++|+....++.+++......++|+++|+||+|+.+
T Consensus 80 -------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 122 (171)
T 1upt_A 80 -------------------------------------YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 122 (171)
T ss_dssp -------------------------------------EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred -------------------------------------EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcC
Confidence 9999999999999999999988765557899999999999987
Q ss_pred hhhHHHHHHHh--------CCcEEEEeccchHHHHHHhhhh
Q psy2970 178 ALDEKELIDRI--------MIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 178 ~~e~~~l~~~~--------~~~~~etSAk~~~~~~~~l~~i 210 (329)
..+.+++.+.+ +++++++||+++.+.+++++.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 163 (171)
T 1upt_A 123 AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWL 163 (171)
T ss_dssp CCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHH
T ss_pred CCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHH
Confidence 64444444444 3479999999987777777655
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-26 Score=194.90 Aligned_cols=153 Identities=18% Similarity=0.274 Sum_probs=133.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
.+.+||+++|++|||||||++++.++.+...+.+|++..+.. +++..+.+.+|||||++++..++..+++.+|+++
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i- 85 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL- 85 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE-
Confidence 467999999999999999999999999888889999887654 3555689999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++++++++.+..|+.++++.....++|+++|+||+|
T Consensus 86 ----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D 125 (181)
T 2fn4_A 86 ----------------------------------------LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 125 (181)
T ss_dssp ----------------------------------------EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGG
T ss_pred ----------------------------------------EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 9999999999999999999886654456899999999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.+. .+++++++..+++++++||+++.+.+++++.+.
T Consensus 126 l~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 167 (181)
T 2fn4_A 126 LESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLV 167 (181)
T ss_dssp GGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 9653 557788889999999999999877777776653
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=199.86 Aligned_cols=153 Identities=28% Similarity=0.529 Sum_probs=129.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQ-DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~-~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
....||+++|++|||||||+++|.++.+.. .+.||++..+..++...+.+.+|||||+++++.++..+++++|+++
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii--- 91 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVI--- 91 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEE---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEE---
Confidence 467899999999999999999999999987 7899999888888899999999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcC-------CCCcEEEE
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQL-------IGIPILVL 169 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~-------~~iPIiLV 169 (329)
+|||++++++|+.+..|+.++++.... .++|++||
T Consensus 92 --------------------------------------~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv 133 (199)
T 4bas_A 92 --------------------------------------FVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFF 133 (199)
T ss_dssp --------------------------------------EEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEE
T ss_pred --------------------------------------EEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEE
Confidence 999999999999999999998765222 38999999
Q ss_pred EEcCCCCChhhHHHHHH---------HhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 170 GNKRDLPNALDEKELID---------RIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 170 gNK~Dl~~~~e~~~l~~---------~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+||+|+.+..+.+++.+ ..+++++++||+++.+++++++.+.
T Consensus 134 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 184 (199)
T 4bas_A 134 ANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQ 184 (199)
T ss_dssp EECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred EECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHH
Confidence 99999987644333333 3456799999999777777776653
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-26 Score=199.61 Aligned_cols=151 Identities=21% Similarity=0.294 Sum_probs=126.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
.+.+||+++|++|||||||++++.++.+...+.||++..+.. ++.+.+.+.+|||||+++++.+ ..+++.+|+++
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i- 96 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL- 96 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE-
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE-
Confidence 467999999999999999999999999888889999877643 4667789999999999998876 66999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc--CCCCcEEEEEEc
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ--LIGIPILVLGNK 172 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~--~~~iPIiLVgNK 172 (329)
+|||++++++|+.+..|+.++..... ..++|++||+||
T Consensus 97 ----------------------------------------lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK 136 (187)
T 3c5c_A 97 ----------------------------------------VVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNK 136 (187)
T ss_dssp ----------------------------------------EEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_pred ----------------------------------------EEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEEC
Confidence 99999999999999999988865421 257999999999
Q ss_pred CCCCCh-----hhHHHHHHHhCCcEEEEec-cchHHHHHHhhhh
Q psy2970 173 RDLPNA-----LDEKELIDRIMIDFWITLT-LLIRWCESFLHHF 210 (329)
Q Consensus 173 ~Dl~~~-----~e~~~l~~~~~~~~~etSA-k~~~~~~~~l~~i 210 (329)
+|+.+. .++++++++++++++++|| +++.+++++++.+
T Consensus 137 ~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l 180 (187)
T 3c5c_A 137 LDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEA 180 (187)
T ss_dssp GGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHH
T ss_pred cchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHH
Confidence 999643 5688899999999999999 7877777776654
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-26 Score=199.78 Aligned_cols=158 Identities=20% Similarity=0.266 Sum_probs=131.1
Q ss_pred HHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhh
Q psy2970 11 WFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCR 87 (329)
Q Consensus 11 ~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~ 87 (329)
++++...++++||+++|++|||||||++++.++.+...+.||++..+.. +++..+.+.+|||||+++ ...+..+++
T Consensus 19 ~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~ 97 (196)
T 2atv_A 19 YFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMR 97 (196)
T ss_dssp --------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHH
T ss_pred chhccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhc
Confidence 3445556778999999999999999999999999988888998877653 456678999999999998 788899999
Q ss_pred ccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEE
Q psy2970 88 GVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPIL 167 (329)
Q Consensus 88 ~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIi 167 (329)
.+|+++ +|||++++++|+.+..|+..+.+.....++|++
T Consensus 98 ~~d~ii-----------------------------------------lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~pii 136 (196)
T 2atv_A 98 WGEGFV-----------------------------------------LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLI 136 (196)
T ss_dssp HCSEEE-----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEE
T ss_pred cCCEEE-----------------------------------------EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEE
Confidence 999999 999999999999999998888764444689999
Q ss_pred EEEEcCCCCCh-----hhHHHHHHHhCCcEEEEeccchH-HHHHHhhhh
Q psy2970 168 VLGNKRDLPNA-----LDEKELIDRIMIDFWITLTLLIR-WCESFLHHF 210 (329)
Q Consensus 168 LVgNK~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~-~~~~~l~~i 210 (329)
+|+||+|+.+. .++++++++++++++++||+++. +.+++++.+
T Consensus 137 lv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l 185 (196)
T 2atv_A 137 LVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL 185 (196)
T ss_dssp EEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred EEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHH
Confidence 99999999653 56788999999999999999977 777777655
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-26 Score=190.48 Aligned_cols=152 Identities=24% Similarity=0.359 Sum_probs=131.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
.+.+||+++|++|||||||++++.++.+...+.+|++..+.. ++...+.+.+|||||++++...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 467999999999999999999999999887778888766532 4566789999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++++.+..|+.++.... ..++|+++|+||+
T Consensus 84 -----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~ 121 (170)
T 1r2q_A 84 -----------------------------------------VVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKA 121 (170)
T ss_dssp -----------------------------------------EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECG
T ss_pred -----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECc
Confidence 9999999999999999998887642 3589999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.++ .++.+++++.+++++++||+++.+.+++++.+.
T Consensus 122 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~ 164 (170)
T 1r2q_A 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164 (170)
T ss_dssp GGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred cCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 98653 567788899999999999999888888776653
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-26 Score=203.15 Aligned_cols=151 Identities=17% Similarity=0.276 Sum_probs=129.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
.+.+||+++|++|||||||++++.++.+...+.||++..+.. +++..+.+.+|||+|+++++.++..+++++|+++
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i- 103 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL- 103 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE-
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE-
Confidence 457999999999999999999999999988889999988763 4677789999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHH-HHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEA-SRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~-~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++|+. +..|+..+... ..++|++|||||+
T Consensus 104 ----------------------------------------~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~ 141 (214)
T 3q3j_B 104 ----------------------------------------LCFDISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKT 141 (214)
T ss_dssp ----------------------------------------EEEETTCTHHHHHHHTHHHHHHHHH--CTTSEEEEEEECG
T ss_pred ----------------------------------------EEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECh
Confidence 9999999999999 67787777654 3589999999999
Q ss_pred CCCC-----------------hhhHHHHHHHhCC-cEEEEeccchHH-HHHHhhhhc
Q psy2970 174 DLPN-----------------ALDEKELIDRIMI-DFWITLTLLIRW-CESFLHHFG 211 (329)
Q Consensus 174 Dl~~-----------------~~e~~~l~~~~~~-~~~etSAk~~~~-~~~~l~~i~ 211 (329)
|+.+ ..+++++++++++ +|+||||+++.+ ++++++.+.
T Consensus 142 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~ 198 (214)
T 3q3j_B 142 DLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTAS 198 (214)
T ss_dssp GGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHH
T ss_pred hhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHH
Confidence 9954 2567889999999 999999999776 777776553
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=6.1e-26 Score=189.80 Aligned_cols=151 Identities=25% Similarity=0.375 Sum_probs=130.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
+.+||+++|++|||||||++++.++.+...+.||++..+. .++++.+.+.+|||||++.+...+..+++++|+++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i- 80 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAAL- 80 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE-
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEE-
Confidence 3689999999999999999999999988778888886653 24567789999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|+|++++.+++.+..|+..+.+.. ..++|+++|+||+|
T Consensus 81 ----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~D 119 (170)
T 1ek0_A 81 ----------------------------------------VVYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKID 119 (170)
T ss_dssp ----------------------------------------EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGG
T ss_pred ----------------------------------------EEEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCC
Confidence 9999999999999999998887653 36799999999999
Q ss_pred CCCh--------hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 175 LPNA--------LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 175 l~~~--------~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.+. .+.+++++..+++++++||+++.+.+++++.+.
T Consensus 120 l~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 164 (170)
T 1ek0_A 120 XLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIG 164 (170)
T ss_dssp GGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHH
T ss_pred ccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 8543 457788899999999999999888888776654
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-26 Score=191.08 Aligned_cols=150 Identities=17% Similarity=0.166 Sum_probs=106.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE---EeeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~---~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
.+||+++|++|||||||++++.+..+. ...++.+..+. .+++..+.+.+|||||++.++.++..+++.+|+++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i--- 77 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYV--- 77 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEE---
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEE---
Confidence 589999999999999999999977654 23444444433 35777889999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+.+..|+.++.+.....++|+++|+||+|+.
T Consensus 78 --------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 119 (166)
T 3q72_A 78 --------------------------------------IVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119 (166)
T ss_dssp --------------------------------------EEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCC
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccc
Confidence 999999999999999999999876556789999999999997
Q ss_pred Ch-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 177 NA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 177 ~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+. .+++++++.++++++++||+++.+.+++++.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp SSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 53 457788999999999999999877787776553
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-26 Score=196.92 Aligned_cols=154 Identities=24% Similarity=0.402 Sum_probs=132.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCcccc-chHHHHhhccce
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFR-SMWERYCRGVNA 91 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~-~~~~~~~~~ad~ 91 (329)
.++.+||+++|++|||||||++++.++.+...+.+|++.++.. ++++.+.+.+|||||+++++ .++..+++.+|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 3567999999999999999999999999887788888865542 35566899999999999998 889999999999
Q ss_pred eEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEE
Q psy2970 92 IVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGN 171 (329)
Q Consensus 92 iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgN 171 (329)
++ +|||++++.+++.+..|+.++.+.....++|+++|+|
T Consensus 97 ii-----------------------------------------lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 135 (189)
T 1z06_A 97 VV-----------------------------------------FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGN 135 (189)
T ss_dssp EE-----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEE
T ss_pred EE-----------------------------------------EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 99 9999999999999999999888765457899999999
Q ss_pred cCCCCCh-----hhHHHHHHHhCCcEEEEeccch---HHHHHHhhhhc
Q psy2970 172 KRDLPNA-----LDEKELIDRIMIDFWITLTLLI---RWCESFLHHFG 211 (329)
Q Consensus 172 K~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~---~~~~~~l~~i~ 211 (329)
|+|+.+. .+.++++++++++++++||++. ..++++++.+.
T Consensus 136 K~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~ 183 (189)
T 1z06_A 136 KCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 183 (189)
T ss_dssp CTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC
T ss_pred CccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHH
Confidence 9999653 4577889999999999999998 77777776654
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=195.67 Aligned_cols=154 Identities=18% Similarity=0.283 Sum_probs=133.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
..+.+||+++|++|||||||++++.++.+...+.+|++..+.. +++..+.+.+|||||++++..++..+++.+|+++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence 3467999999999999999999999999888888888876643 4566689999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++++.+..|+..+.......++|++||+||+
T Consensus 91 -----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 129 (206)
T 2bov_A 91 -----------------------------------------CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS 129 (206)
T ss_dssp -----------------------------------------EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECT
T ss_pred -----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecc
Confidence 999999999999999999998876545689999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.+. .++.+++++++++++++||+++.+.+++++.+.
T Consensus 130 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 172 (206)
T 2bov_A 130 DLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM 172 (206)
T ss_dssp TCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHH
T ss_pred CccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99753 467788899999999999999777777776553
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.8e-26 Score=192.83 Aligned_cols=154 Identities=22% Similarity=0.372 Sum_probs=133.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE---Ee--eCc---------eEEEEEEecCCCccccchH
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR---KI--TKG---------NVTIKVWDIGGQPRFRSMW 82 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~---~i--~~~---------~~~l~I~DtpG~e~~~~~~ 82 (329)
..+.+||+++|++|||||||++++.++.+...+.||++.++. .+ +.. .+.+.+|||||++++...+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 456799999999999999999999999988888899987765 22 333 6899999999999999999
Q ss_pred HHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCC
Q psy2970 83 ERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLI 162 (329)
Q Consensus 83 ~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~ 162 (329)
..+++.+|+++ +|||++++.+++.+..|+..+.......
T Consensus 88 ~~~~~~~d~~i-----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 126 (195)
T 3bc1_A 88 TAFFRDAMGFL-----------------------------------------LLFDLTNEQSFLNVRNWISQLQMHAYSE 126 (195)
T ss_dssp HHTTTTCSEEE-----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHSSSS
T ss_pred HHHHcCCCEEE-----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999 9999999999999999999887754446
Q ss_pred CCcEEEEEEcCCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 163 GIPILVLGNKRDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 163 ~iPIiLVgNK~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
++|+++|+||+|+.+. .+++++++.++++++++||+++.+++++++.+.
T Consensus 127 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 180 (195)
T 3bc1_A 127 NPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLL 180 (195)
T ss_dssp SCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred CCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 8999999999999753 567888999999999999999777777776553
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.5e-26 Score=192.88 Aligned_cols=153 Identities=18% Similarity=0.292 Sum_probs=132.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
.+.+||+++|++|||||||++++.++.+...+.+|++..+.. +++..+.+.+|||||++++..++..+++.+|+++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i- 94 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL- 94 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE-
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE-
Confidence 467999999999999999999999999888888888876643 4566689999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++++++++.+..|+.++.......++|+++|+||+|
T Consensus 95 ----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 134 (187)
T 2a9k_A 95 ----------------------------------------CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSD 134 (187)
T ss_dssp ----------------------------------------EEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGG
T ss_pred ----------------------------------------EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 9999999999999999999887754446899999999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.+. .++.+++++++++++++||+++.+.+++++.+.
T Consensus 135 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 176 (187)
T 2a9k_A 135 LEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM 176 (187)
T ss_dssp GGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred ccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHH
Confidence 8653 467788899999999999999777777776553
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=8.9e-26 Score=194.07 Aligned_cols=151 Identities=19% Similarity=0.345 Sum_probs=131.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
+.+||+++|++|||||||++++.++.+...+.+|++.++. .++...+.+.+|||||++++..++..+++.+|+++
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii- 92 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI- 92 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE-
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE-
Confidence 4689999999999999999999999988788888886654 24567789999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++++.+++.+..|+.++.......++|+++|+||+|
T Consensus 93 ----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~D 132 (195)
T 1x3s_A 93 ----------------------------------------LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID 132 (195)
T ss_dssp ----------------------------------------EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTT
T ss_pred ----------------------------------------EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCc
Confidence 9999999999999999999887654456899999999999
Q ss_pred CCCh----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 175 LPNA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 175 l~~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+.+. .++.+++++.+++++++||+++.+.+++++.+
T Consensus 133 l~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 172 (195)
T 1x3s_A 133 KENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEEL 172 (195)
T ss_dssp SSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred CcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence 9543 56778899999999999999977777776655
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-25 Score=185.80 Aligned_cols=151 Identities=20% Similarity=0.301 Sum_probs=130.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
+++||+++|++|||||||++++.++.+...+.+|++..+.. +++..+.+.+|||||++++...+..+++.+|+++
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i-- 79 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL-- 79 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEE--
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEE--
Confidence 36899999999999999999999998887778888766543 4566788999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++.+++.+..|+.++.+.....++|+++|+||+|+
T Consensus 80 ---------------------------------------~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl 120 (166)
T 2ce2_X 80 ---------------------------------------CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL 120 (166)
T ss_dssp ---------------------------------------EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTC
T ss_pred ---------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhh
Confidence 99999999999999999888876544457999999999998
Q ss_pred CCh----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 176 PNA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 176 ~~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
.+. .+.++++++++++++++||+++.+.+++++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (166)
T 2ce2_X 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159 (166)
T ss_dssp SCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred hhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 753 56788999999999999999977777776654
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=195.35 Aligned_cols=149 Identities=17% Similarity=0.305 Sum_probs=126.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE--eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK--ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~--i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
..+++||+++|++|||||||++++.++.+...+.||.+..... +++..+.+.+|||+|+++++ +++.+|+++
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i- 90 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV- 90 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE-
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE-
Confidence 4578999999999999999999999999987788885533222 45667899999999999876 788899999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++++++|+.+..|+.++.......++|++|||||+|
T Consensus 91 ----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 130 (184)
T 3ihw_A 91 ----------------------------------------FVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDA 130 (184)
T ss_dssp ----------------------------------------EEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTT
T ss_pred ----------------------------------------EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 9999999999999999999998765456899999999999
Q ss_pred CCC-------hhhHHHHHHHhC-CcEEEEeccchHHHHHHhhhhc
Q psy2970 175 LPN-------ALDEKELIDRIM-IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 175 l~~-------~~e~~~l~~~~~-~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.+ ..++++++++++ ++|+++||+++.+++++++.+.
T Consensus 131 l~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~ 175 (184)
T 3ihw_A 131 ISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVA 175 (184)
T ss_dssp CBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHH
T ss_pred cccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHH
Confidence 942 256788999997 8999999999777777776553
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=188.66 Aligned_cols=152 Identities=22% Similarity=0.335 Sum_probs=131.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
.+.+||+++|++|||||||++++.++.+...+.||.+..+.. ++.....+.+|||||++++...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 467999999999999999999999999887788888866542 4566789999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++.+++.+..|+..+... ...++|+++|+||+
T Consensus 84 -----------------------------------------~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~ 121 (170)
T 1z0j_A 84 -----------------------------------------IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKC 121 (170)
T ss_dssp -----------------------------------------EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECT
T ss_pred -----------------------------------------EEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECC
Confidence 999999999999998888887653 24679999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.+. .+.+++++.++++++++||+++.+.+++++.+.
T Consensus 122 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~ 164 (170)
T 1z0j_A 122 DLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEIS 164 (170)
T ss_dssp TCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHH
Confidence 99653 457788899999999999999877777776553
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.6e-26 Score=195.69 Aligned_cols=154 Identities=27% Similarity=0.516 Sum_probs=129.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQ-FSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~-~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
..+.+||+++|++|||||||++++.++. +...+.+|++.....+..++..+.+|||||+++++..+..+++++|+++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii-- 95 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAII-- 95 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEE--
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEE--
Confidence 4578999999999999999999999887 5667889999887777777899999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcC--CCCcEEEEEEcC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQL--IGIPILVLGNKR 173 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~--~~iPIiLVgNK~ 173 (329)
+|||++++++++.+..|+.++.+.... .++|+++|+||+
T Consensus 96 ---------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 136 (190)
T 2h57_A 96 ---------------------------------------FVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKM 136 (190)
T ss_dssp ---------------------------------------EEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECT
T ss_pred ---------------------------------------EEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCc
Confidence 999999999999999999999876544 689999999999
Q ss_pred CCCChhhHHHHHHH--------hCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNALDEKELIDR--------IMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~~e~~~l~~~--------~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.++.+.+++.+. .+++++++||+++.+.+++++.+.
T Consensus 137 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 182 (190)
T 2h57_A 137 DLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQ 182 (190)
T ss_dssp TSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred CcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHH
Confidence 99876333333332 246899999999877787776653
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-26 Score=191.92 Aligned_cols=151 Identities=24% Similarity=0.380 Sum_probs=123.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--E--eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~--i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
++.+||+++|++|||||||++++.++.+...+.||++.++. . +++..+.+.+|||||++++..++..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 56799999999999999999999999988778888887654 2 4567789999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|+|++++++++.+..|+..+.... ..++|+++|+||+
T Consensus 84 -----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~ 121 (170)
T 1z08_A 84 -----------------------------------------LVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKI 121 (170)
T ss_dssp -----------------------------------------EEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECG
T ss_pred -----------------------------------------EEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECc
Confidence 9999999999999999988875532 2578999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|+.++ .++++++++++++++++||+++.+.+++++.+
T Consensus 122 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 163 (170)
T 1z08_A 122 DLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163 (170)
T ss_dssp GGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 99653 56788999999999999999987777777655
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-26 Score=191.28 Aligned_cols=150 Identities=22% Similarity=0.398 Sum_probs=129.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
++.+||+++|++|||||||++++.++.+...+.||++.++.. +++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 467999999999999999999999999888888888866542 3456789999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|+|++++++++.+..|+.++.... .++|+++|+||+
T Consensus 83 -----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~ 119 (168)
T 1z2a_A 83 -----------------------------------------LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKI 119 (168)
T ss_dssp -----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECG
T ss_pred -----------------------------------------EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECc
Confidence 9999999999999999988886642 679999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|+.+. .++++++++++++++++||+++.+.+++++.+
T Consensus 120 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 161 (168)
T 1z2a_A 120 DLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 161 (168)
T ss_dssp GGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred ccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence 98652 56778999999999999999977777766554
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.6e-26 Score=191.47 Aligned_cols=152 Identities=22% Similarity=0.417 Sum_probs=129.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhcccee
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAI 92 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~i 92 (329)
..+.+||+++|++|||||||++++.++.+...+.+|++.++.. +++..+.+.+|||||++.+...+..+++.+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 3567999999999999999999999999887788888866542 345568999999999999999999999999999
Q ss_pred EeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 93 VWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+ +|||++++.+++.+..|+..+... ..++|+++|+||
T Consensus 86 i-----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK 122 (181)
T 3tw8_B 86 I-----------------------------------------VVYDVTSAESFVNVKRWLHEINQN--CDDVCRILVGNK 122 (181)
T ss_dssp E-----------------------------------------EEEETTCHHHHHHHHHHHHHHHHH--CTTSEEEEEEEC
T ss_pred E-----------------------------------------EEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEC
Confidence 9 999999999999999999888664 357999999999
Q ss_pred CCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 173 RDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 173 ~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+.+. .++.++++..+++++++||+++.+.+++++.+.
T Consensus 123 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 166 (181)
T 3tw8_B 123 NDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCIT 166 (181)
T ss_dssp TTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred CCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 998653 567889999999999999999877787776654
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=192.78 Aligned_cols=152 Identities=24% Similarity=0.409 Sum_probs=131.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
+..+||+++|++|||||||++++.++.+...+.+|++.++.. +++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 456899999999999999999999999888888888866542 3456689999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++++.+..|+..+.... ..++|+++|+||+
T Consensus 94 -----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~ 131 (196)
T 3tkl_A 94 -----------------------------------------VVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKC 131 (196)
T ss_dssp -----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECT
T ss_pred -----------------------------------------EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECc
Confidence 9999999999999999988886543 3579999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.+. .+++++++.++++++++||+++.+.+++++.+.
T Consensus 132 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 174 (196)
T 3tkl_A 132 DLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA 174 (196)
T ss_dssp TCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Confidence 99754 567889999999999999999777777776553
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6.7e-26 Score=189.97 Aligned_cols=151 Identities=22% Similarity=0.393 Sum_probs=123.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--E--eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~--i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
..+||+++|++|||||||++++.++++...+.||++.++. . +++..+.+.+|||||++++...+..+++.+|+++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i- 80 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGII- 80 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE-
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEE-
Confidence 4689999999999999999999999988778888886553 2 3456789999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|+|++++.+++.+..|+..+.... ..++|+++|+||+|
T Consensus 81 ----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~D 119 (170)
T 1g16_A 81 ----------------------------------------LVYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSD 119 (170)
T ss_dssp ----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTT
T ss_pred ----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcc
Confidence 9999999999999999988886642 35789999999999
Q ss_pred CCCh----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 175 LPNA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 175 l~~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.+. .++++++++++++++++||+++.+.+++++.+.
T Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 160 (170)
T 1g16_A 120 METRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160 (170)
T ss_dssp CTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred CCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 9542 567889999999999999999777777776553
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-25 Score=190.40 Aligned_cols=153 Identities=22% Similarity=0.310 Sum_probs=131.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhcccee
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAI 92 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~i 92 (329)
..+.+||+++|++|||||||++++.++.+...+.+|++..+.. ++...+.+.+|||||++++...+..+++.+|++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence 3567999999999999999999999999887777888765542 456678999999999999999999999999999
Q ss_pred EeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 93 VWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+ +|||++++.+++.+..|+..+.... ..++|+++|+||
T Consensus 89 i-----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK 126 (181)
T 2efe_B 89 I-----------------------------------------IVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNK 126 (181)
T ss_dssp E-----------------------------------------EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC
T ss_pred E-----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEEC
Confidence 9 9999999999999999998887643 358999999999
Q ss_pred CCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 173 RDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 173 ~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+.+. .++++++++.+++++++||+++...+++++.+.
T Consensus 127 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 170 (181)
T 2efe_B 127 SDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIA 170 (181)
T ss_dssp TTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHH
T ss_pred CcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 999653 467788999999999999999877788776654
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-26 Score=200.21 Aligned_cols=153 Identities=24% Similarity=0.336 Sum_probs=123.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--E--eeCceEEEEEEecCCCccccchHHHHhhcccee
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAI 92 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~--i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~i 92 (329)
.++.+||+++|++|||||||++++.++.+...+.+|++.++. . +++..+.+.+|||||+++++.++..+++.+|++
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA 105 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence 345699999999999999999999999988788899886653 2 345568999999999999999999999999999
Q ss_pred EeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 93 VWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+ +|||++++++|+.+..|+.++.+.. ..++|++||+||
T Consensus 106 i-----------------------------------------lv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK 143 (201)
T 2hup_A 106 I-----------------------------------------LAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNK 143 (201)
T ss_dssp E-----------------------------------------EEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEEC
T ss_pred E-----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEEC
Confidence 9 9999999999999999998887643 367999999999
Q ss_pred CCCCCh-----hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 173 RDLPNA-----LDEKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 173 ~Dl~~~-----~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+.+. .+++++++++++ +++++||+++.++++++..+.
T Consensus 144 ~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~ 188 (201)
T 2hup_A 144 SDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVA 188 (201)
T ss_dssp TTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHH
T ss_pred CccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999753 567889999999 999999999777777776553
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.93 E-value=9.3e-26 Score=191.59 Aligned_cols=154 Identities=25% Similarity=0.409 Sum_probs=124.1
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccc
Q psy2970 16 FWKEEMELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVN 90 (329)
Q Consensus 16 ~~~k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad 90 (329)
+.++.+||+++|++|||||||++++.++.+. ..+.||++.++.. +++..+.+.+|||||+++++.++..+++++|
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 4567899999999999999999999998884 4677888877653 4566789999999999999999999999999
Q ss_pred eeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEE
Q psy2970 91 AIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLG 170 (329)
Q Consensus 91 ~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVg 170 (329)
+++ +|+|++++.+++.+..|+..+..... .++|+++|+
T Consensus 86 ~ii-----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~ 123 (180)
T 2g6b_A 86 ALL-----------------------------------------LLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLG 123 (180)
T ss_dssp EEE-----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEE
T ss_pred EEE-----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEE
Confidence 999 99999999999999999888866432 679999999
Q ss_pred EcCCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 171 NKRDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 171 NK~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
||+|+.++ .++++++++++++++++||+++.+.+++++.+.
T Consensus 124 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 169 (180)
T 2g6b_A 124 NKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIA 169 (180)
T ss_dssp ECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred ECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99999753 467788999999999999999777777776553
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-25 Score=193.38 Aligned_cols=150 Identities=19% Similarity=0.298 Sum_probs=127.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
++.+||+++|++|||||||++++.++.+...+.||++..+.. ++...+.+.+|||||++++..++..+++.+|+++
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i- 83 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL- 83 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE-
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE-
Confidence 567999999999999999999999999988888999877643 4567789999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHH-HHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEAS-RNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~-~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++|+.+ ..|+..+.+. ..++|+++|+||+
T Consensus 84 ----------------------------------------~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~ 121 (184)
T 1m7b_A 84 ----------------------------------------ICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKS 121 (184)
T ss_dssp ----------------------------------------EEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECG
T ss_pred ----------------------------------------EEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcc
Confidence 99999999999998 5677666543 2579999999999
Q ss_pred CCCC-----------------hhhHHHHHHHhC-CcEEEEecc-chHHHHHHhhhh
Q psy2970 174 DLPN-----------------ALDEKELIDRIM-IDFWITLTL-LIRWCESFLHHF 210 (329)
Q Consensus 174 Dl~~-----------------~~e~~~l~~~~~-~~~~etSAk-~~~~~~~~l~~i 210 (329)
|+.+ ..++++++++++ .+++++||+ ++.+.+++++.+
T Consensus 122 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i 177 (184)
T 1m7b_A 122 DLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 177 (184)
T ss_dssp GGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHH
T ss_pred hhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHH
Confidence 9963 145778999988 799999999 577777777654
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-25 Score=190.05 Aligned_cols=152 Identities=18% Similarity=0.299 Sum_probs=130.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhcccee
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAI 92 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~i 92 (329)
..+.+||+++|++|||||||++++.++.+...+.+|++.++. .++...+.+.+|||||++++...+..+++++|++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 345799999999999999999999999988778888876543 2456678999999999999999999999999999
Q ss_pred EeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 93 VWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+ +|||++++.+++.+..|+.++.... ..++|+++|+||
T Consensus 92 i-----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK 129 (179)
T 1z0f_A 92 L-----------------------------------------MVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNK 129 (179)
T ss_dssp E-----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEEC
T ss_pred E-----------------------------------------EEEeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEEC
Confidence 9 9999999999999999988876542 357999999999
Q ss_pred CCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 173 RDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 173 ~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+|+.++ .++++++++++++++++||+++.+.+++++.+
T Consensus 130 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 172 (179)
T 1z0f_A 130 ADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEA 172 (179)
T ss_dssp TTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred cccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 999643 46788899999999999999977777776554
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6e-26 Score=195.24 Aligned_cols=153 Identities=25% Similarity=0.418 Sum_probs=129.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
..+.+||+++|++|||||||++++.++++ ..+.+|++..+..+..++..+.+|||||+++++.++..+++++|+++
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii--- 93 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVI--- 93 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEE---
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEE---
Confidence 35679999999999999999999999988 56778888877777777899999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+.+..|+.++++.....++|+++|+||+|+.
T Consensus 94 --------------------------------------~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 135 (181)
T 2h17_A 94 --------------------------------------VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 135 (181)
T ss_dssp --------------------------------------EEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred --------------------------------------EEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcc
Confidence 999999999999999999999876545789999999999998
Q ss_pred ChhhHHHHHHHh--------CCcEEEEeccchHHHHHHhhhhc
Q psy2970 177 NALDEKELIDRI--------MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 177 ~~~e~~~l~~~~--------~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
++.+.+++.+.+ +++++++||+++.+.+++++.+.
T Consensus 136 ~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 178 (181)
T 2h17_A 136 ECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMM 178 (181)
T ss_dssp TCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred cCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHH
Confidence 754444444443 35799999999888888776653
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.4e-26 Score=190.74 Aligned_cols=150 Identities=18% Similarity=0.194 Sum_probs=113.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccc-hHHHHhhccceeEe
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRS-MWERYCRGVNAIVW 94 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~-~~~~~~~~ad~iI~ 94 (329)
.+||+++|++|||||||++++.+..+...+.++.+.+.. .+++..+.+.+|||||++++.. ++..+++.+|+++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i- 80 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFL- 80 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEE-
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEE-
Confidence 479999999999999999999987765444443333322 2466778999999999999876 7788899999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++++++|+.+..|+.++.......++|+++|+||+|
T Consensus 81 ----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 120 (169)
T 3q85_A 81 ----------------------------------------IVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSD 120 (169)
T ss_dssp ----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTT
T ss_pred ----------------------------------------EEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcc
Confidence 9999999999999999999998765556899999999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+.+. .+++++++.++++++++||+++.+.+++++.+
T Consensus 121 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 121 LARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp CGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred hhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9743 56788999999999999999977777776654
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-25 Score=188.16 Aligned_cols=152 Identities=20% Similarity=0.171 Sum_probs=115.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCcc--ccchHHHHhhccce
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPR--FRSMWERYCRGVNA 91 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~--~~~~~~~~~~~ad~ 91 (329)
.+.+||+++|++|||||||++++.++.+...+ ++.+.++. .+++..+.+.+|||||++. +..+...+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 46799999999999999999999998875432 34443322 3456678999999999988 56677888899999
Q ss_pred eEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEE
Q psy2970 92 IVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGN 171 (329)
Q Consensus 92 iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgN 171 (329)
++ +|||++++++|+.+..|+..+.+.....++|+++|+|
T Consensus 81 ~i-----------------------------------------~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~N 119 (175)
T 2nzj_A 81 YV-----------------------------------------IVYSIADRGSFESASELRIQLRRTHQADHVPIILVGN 119 (175)
T ss_dssp EE-----------------------------------------EEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEE
T ss_pred EE-----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEE
Confidence 99 9999999999999999998887754456899999999
Q ss_pred cCCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 172 KRDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 172 K~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+|+.+. .+++++++.++++++++||+++.+.+++++.+.
T Consensus 120 K~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 164 (175)
T 2nzj_A 120 KADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVV 164 (175)
T ss_dssp CTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHH
T ss_pred ChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Confidence 9999753 456778889999999999999877777776653
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-25 Score=191.52 Aligned_cols=147 Identities=13% Similarity=0.254 Sum_probs=120.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
.+++||+++|++|||||||++++.++.+.. +.||++..+.. +++..+.+++|||||+++ ..+++++|+++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i- 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI- 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE-
Confidence 468999999999999999999999999875 78888866543 456678999999999987 46889999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC--CcCCCCcEEEEEEc
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK--PQLIGIPILVLGNK 172 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~--~~~~~iPIiLVgNK 172 (329)
+|||++++++|+.+..|+..+... ....++|++|||||
T Consensus 78 ----------------------------------------lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK 117 (178)
T 2iwr_A 78 ----------------------------------------FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQ 117 (178)
T ss_dssp ----------------------------------------EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEEC
T ss_pred ----------------------------------------EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 999999999999999875544332 22368999999999
Q ss_pred CCCCC-------hhhHHHHHHHh-CCcEEEEeccchHHHHHHhhhhc
Q psy2970 173 RDLPN-------ALDEKELIDRI-MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 173 ~Dl~~-------~~e~~~l~~~~-~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+.+ ..+++++++++ +++++++||+++.+.+++++.+.
T Consensus 118 ~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~ 164 (178)
T 2iwr_A 118 DRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVA 164 (178)
T ss_dssp TTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHH
T ss_pred ccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHH
Confidence 99932 25677888887 68999999999777777776553
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-26 Score=196.88 Aligned_cols=152 Identities=23% Similarity=0.380 Sum_probs=102.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
+..+||+++|++|||||||++++.++.+...+.||++.++.. +++..+.+.+|||||++++..++..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 457999999999999999999999998887788888876542 3456689999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++|+.+..|+.++.... ..++|++||+||+
T Consensus 86 -----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~ 123 (183)
T 2fu5_C 86 -----------------------------------------LVYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKC 123 (183)
T ss_dssp -----------------------------------------EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC-
T ss_pred -----------------------------------------EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECc
Confidence 9999999999999999988886642 3579999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.+. .++++++++++++++++||+++.+.+++++.+.
T Consensus 124 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 166 (183)
T 2fu5_C 124 DVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 166 (183)
T ss_dssp -CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHH
T ss_pred cCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99753 567889999999999999999777777776553
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-25 Score=188.60 Aligned_cols=152 Identities=21% Similarity=0.291 Sum_probs=128.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
+++||+++|++|||||||++++.++.+...+.||++..+.. .+.+.+.+.+|||||++++..++..+++.+|+++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i-- 79 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFI-- 79 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEE--
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEE--
Confidence 57999999999999999999999999887788888876654 3566788999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC-cCCCCcEEEEEEcCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP-QLIGIPILVLGNKRD 174 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~-~~~~iPIiLVgNK~D 174 (329)
+|||++++.+++....|+..+.+.. ...++|+++|+||+|
T Consensus 80 ---------------------------------------~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~D 120 (172)
T 2erx_A 80 ---------------------------------------LVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCD 120 (172)
T ss_dssp ---------------------------------------EEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGG
T ss_pred ---------------------------------------EEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccc
Confidence 9999999999998888887776531 235799999999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.+. .+.+++++.++++++++||+++.+.+++++.+.
T Consensus 121 l~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 162 (172)
T 2erx_A 121 ESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 162 (172)
T ss_dssp GGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHH
Confidence 8653 457788889999999999999887888776654
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.2e-26 Score=198.58 Aligned_cols=153 Identities=18% Similarity=0.198 Sum_probs=123.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccc-hHHHHhhccce
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRS-MWERYCRGVNA 91 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~-~~~~~~~~ad~ 91 (329)
....+||+++|++|||||||+++|.+..+...+.|+++.+.. .+++..+.+.+|||+|++.+.. ++..+++.+|+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~ 99 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA 99 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence 346799999999999999999999765443233444443322 2566778999999999998765 77889999999
Q ss_pred eEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEE
Q psy2970 92 IVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGN 171 (329)
Q Consensus 92 iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgN 171 (329)
++ +|||++++++|+.+..|+.++.......++|+++|||
T Consensus 100 ~i-----------------------------------------lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 138 (195)
T 3cbq_A 100 FL-----------------------------------------IVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGN 138 (195)
T ss_dssp EE-----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEE
T ss_pred EE-----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEee
Confidence 99 9999999999999999999887654345899999999
Q ss_pred cCCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 172 KRDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 172 K~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|+|+.+. .+++++++.++++++|+||+++.+.+++++.+
T Consensus 139 K~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l 182 (195)
T 3cbq_A 139 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 182 (195)
T ss_dssp CTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred chhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHH
Confidence 9999753 46788999999999999999977777776554
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-25 Score=194.71 Aligned_cols=153 Identities=25% Similarity=0.320 Sum_probs=132.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhcccee
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAI 92 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~i 92 (329)
.++.+||+++|++|||||||++++.++.+...+.||++..+.. ++...+.+.+|||||++++...+..+++.+|++
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 99 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAA 99 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence 4568999999999999999999999999877788888876542 456788999999999999999999999999999
Q ss_pred EeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 93 VWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+ +|||++++++++.+..|+.++.+.. ..++|+++|+||
T Consensus 100 i-----------------------------------------lV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK 137 (192)
T 2fg5_A 100 V-----------------------------------------IVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNK 137 (192)
T ss_dssp E-----------------------------------------EEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC
T ss_pred E-----------------------------------------EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEC
Confidence 9 9999999999999999988886642 357999999999
Q ss_pred CCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 173 RDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 173 ~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+.+. .++++++++++++++++||+++.+.+++++.+.
T Consensus 138 ~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 181 (192)
T 2fg5_A 138 CDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGIS 181 (192)
T ss_dssp GGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred cccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHH
Confidence 999742 567889999999999999999877888776654
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-25 Score=192.10 Aligned_cols=152 Identities=23% Similarity=0.343 Sum_probs=130.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
++.+||+++|++|||||||++++.++.+...+.+|++.++.. ++++.+.+.+|||||++++...+..+++.+|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 457999999999999999999999999887888888866542 3455689999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++++.+..|+.++.... ..++|+++|+||+
T Consensus 88 -----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~ 125 (186)
T 2bme_A 88 -----------------------------------------LVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKK 125 (186)
T ss_dssp -----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECG
T ss_pred -----------------------------------------EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECc
Confidence 9999999999999999988776532 3679999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.+. .++++++++.+++++++||+++.+.+++++.+.
T Consensus 126 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 168 (186)
T 2bme_A 126 DLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCA 168 (186)
T ss_dssp GGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence 99643 567788999999999999999777777776553
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.2e-26 Score=192.38 Aligned_cols=153 Identities=21% Similarity=0.330 Sum_probs=126.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeE--EEee--C-ceEEEEEEecCCCccccchHHHHhhccce
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNM--RKIT--K-GNVTIKVWDIGGQPRFRSMWERYCRGVNA 91 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~--~~i~--~-~~~~l~I~DtpG~e~~~~~~~~~~~~ad~ 91 (329)
.++++||+++|++|||||||++++.++.+...+.||++.++ ..+. + ..+.+.+|||||++.+..++..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 35789999999999999999999999988777778887544 3333 2 35899999999999999999999999999
Q ss_pred eEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc-CCCCc-EEEE
Q psy2970 92 IVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ-LIGIP-ILVL 169 (329)
Q Consensus 92 iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~-~~~iP-IiLV 169 (329)
++ +|||++++++++.+..|+.++..... ..+.| +++|
T Consensus 83 ~i-----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv 121 (178)
T 2hxs_A 83 VL-----------------------------------------LVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV 121 (178)
T ss_dssp EE-----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEE
T ss_pred EE-----------------------------------------EEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEE
Confidence 99 99999999999999888887755211 12445 8999
Q ss_pred EEcCCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 170 GNKRDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 170 gNK~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+||+|+.+. .++++++++++++++++||+++.+.+++++.+
T Consensus 122 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 167 (178)
T 2hxs_A 122 GNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKV 167 (178)
T ss_dssp EECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHH
T ss_pred EEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Confidence 999999653 56778999999999999999977777777655
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-25 Score=189.04 Aligned_cols=151 Identities=21% Similarity=0.370 Sum_probs=130.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
+++||+++|++|||||||++++.++.+...+.+|++.++.. ++++.+.+.+|||||++++...+..+++++|+++
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i- 91 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV- 91 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE-
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE-
Confidence 56999999999999999999999999888888888866542 4556689999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++++.+++.+..|+.++.... ..++|+++|+||+|
T Consensus 92 ----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~D 130 (179)
T 2y8e_A 92 ----------------------------------------VVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTD 130 (179)
T ss_dssp ----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGG
T ss_pred ----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCc
Confidence 9999999999999999988886542 35799999999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.++ .+.++++++.+++++++||+++.+.+++++.+.
T Consensus 131 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 172 (179)
T 2y8e_A 131 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 172 (179)
T ss_dssp GGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred ccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9653 457778889999999999999877787776654
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-25 Score=194.43 Aligned_cols=152 Identities=18% Similarity=0.276 Sum_probs=126.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--E--eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~--i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
...+||+++|++|||||||++++.++++...+.+|++.++. . ++++.+.+.+|||||+++++.++..+++++|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 45799999999999999999999999988777788775543 2 4556789999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++++.+..|+.++.... ..++|+++|+||+
T Consensus 99 -----------------------------------------~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~ 136 (191)
T 2a5j_A 99 -----------------------------------------LVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKS 136 (191)
T ss_dssp -----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECT
T ss_pred -----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECc
Confidence 9999999999999999988886642 3579999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.+. .++++++++++++++++||+++.+++++++.+.
T Consensus 137 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 179 (191)
T 2a5j_A 137 DLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTA 179 (191)
T ss_dssp TCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHH
T ss_pred ccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99652 567889999999999999999877777776553
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-25 Score=193.67 Aligned_cols=150 Identities=15% Similarity=0.214 Sum_probs=128.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
++.+||+++|++|||||||++++.++.+...+.||++..+.. +++..+.+.+|||||+++++.++..+++++|+++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i- 94 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL- 94 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE-
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE-
Confidence 356899999999999999999999999888888998877643 3456689999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHH-HHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~-~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++|+.+. .|+..+.+. ..++|+++|+||+
T Consensus 95 ----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~ 132 (194)
T 2atx_A 95 ----------------------------------------ICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQI 132 (194)
T ss_dssp ----------------------------------------EEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECT
T ss_pred ----------------------------------------EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECh
Confidence 999999999999997 677777653 3489999999999
Q ss_pred CCCCh-----------------hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhh
Q psy2970 174 DLPNA-----------------LDEKELIDRIMI-DFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 174 Dl~~~-----------------~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i 210 (329)
|+.+. .++.+++++++. +++++||+++.+.+++++.+
T Consensus 133 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 187 (194)
T 2atx_A 133 DLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEA 187 (194)
T ss_dssp TSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHH
T ss_pred hhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHH
Confidence 99652 457788899998 89999999977777777654
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-26 Score=195.07 Aligned_cols=151 Identities=21% Similarity=0.290 Sum_probs=113.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
.++.+||+++|++|||||||++++.++.+...+.||++..+.. +++..+.+.+|||||+++++.++..+++++|+++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 4578999999999999999999999999888888998866543 4556778899999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHH-HHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~-~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+|||++++++++.+. .|+..+... ..++|+++|+||
T Consensus 85 -----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK 121 (182)
T 3bwd_D 85 -----------------------------------------LAFSLISKASYENVSKKWIPELKHY--APGVPIVLVGTK 121 (182)
T ss_dssp -----------------------------------------EEEETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEEC
T ss_pred -----------------------------------------EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEec
Confidence 999999999999997 577666553 247999999999
Q ss_pred CCCCCh---------------hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhh
Q psy2970 173 RDLPNA---------------LDEKELIDRIMI-DFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 173 ~Dl~~~---------------~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i 210 (329)
+|+.+. .+++++++.++. +++++||+++.+.+++++.+
T Consensus 122 ~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 175 (182)
T 3bwd_D 122 LDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAA 175 (182)
T ss_dssp HHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHH
T ss_pred hhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHH
Confidence 998543 346788899996 99999999987777777655
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-25 Score=192.63 Aligned_cols=153 Identities=22% Similarity=0.395 Sum_probs=131.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhcccee
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAI 92 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~i 92 (329)
.+..+||+++|++|||||||++++.++.+...+.+|++.++.. ++.+.+.+.+|||||++++..++..+++.+|++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 3456899999999999999999999999887788888866542 356678999999999999999999999999999
Q ss_pred EeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 93 VWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+ +|||++++.+++.+..|+..+.... ..++|+++|+||
T Consensus 99 i-----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK 136 (189)
T 2gf9_A 99 L-----------------------------------------LMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNK 136 (189)
T ss_dssp E-----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEEC
T ss_pred E-----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEEC
Confidence 9 9999999999999999988876542 357999999999
Q ss_pred CCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 173 RDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 173 ~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+.+. .++++++++++++++++||+++.+++++++.+.
T Consensus 137 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 180 (189)
T 2gf9_A 137 CDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV 180 (189)
T ss_dssp TTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred cccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999753 467889999999999999999877777776553
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-25 Score=198.92 Aligned_cols=153 Identities=22% Similarity=0.344 Sum_probs=131.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhcccee
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAI 92 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~i 92 (329)
..+.+||+++|++|||||||++++.++.+...+.+|++.++.. +++..+.+.+|||||++++..++..+++.+|++
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 102 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL 102 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence 3457999999999999999999999999988888998876542 456678999999999999999999999999999
Q ss_pred EeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 93 VWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+ +|||++++++|+.+..|+.++.... ..++|+++|+||
T Consensus 103 i-----------------------------------------~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK 140 (201)
T 2ew1_A 103 I-----------------------------------------LTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNK 140 (201)
T ss_dssp E-----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEEC
T ss_pred E-----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEEC
Confidence 9 9999999999999999988876542 357899999999
Q ss_pred CCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 173 RDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 173 ~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+.+. .+++++++..+++++++||+++.+++++++.+.
T Consensus 141 ~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 184 (201)
T 2ew1_A 141 IDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLA 184 (201)
T ss_dssp GGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred CCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999643 567788889999999999999777777776553
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-25 Score=191.61 Aligned_cols=152 Identities=22% Similarity=0.365 Sum_probs=131.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhcccee
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAI 92 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~i 92 (329)
..+.+||+++|++|||||||++++.++.+...+.+|++..+.. ++...+.+.+|||||++++..++..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA 101 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 3456999999999999999999999999887788888866542 456778999999999999999999999999999
Q ss_pred EeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 93 VWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+ +|||++++.+++.+..|+..+.... ..++|+++|+||
T Consensus 102 i-----------------------------------------~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK 139 (193)
T 2oil_A 102 L-----------------------------------------LVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNK 139 (193)
T ss_dssp E-----------------------------------------EEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEEC
T ss_pred E-----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEEC
Confidence 9 9999999999999999998886643 367999999999
Q ss_pred CCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 173 RDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 173 ~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+|+.+. .+++++++..+++++++||+++.+.+++++.+
T Consensus 140 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 182 (193)
T 2oil_A 140 SDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETV 182 (193)
T ss_dssp GGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHH
T ss_pred CCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 999653 56778888999999999999977777777655
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.2e-25 Score=188.11 Aligned_cols=151 Identities=19% Similarity=0.312 Sum_probs=127.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE--ee--Cce----------------------------
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK--IT--KGN---------------------------- 64 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~--i~--~~~---------------------------- 64 (329)
.++.+||+++|++|||||||++++.++.+...+.||++.++.. +. ...
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 3568999999999999999999999999988888998866542 32 222
Q ss_pred ---------EEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEE
Q psy2970 65 ---------VTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKY 135 (329)
Q Consensus 65 ---------~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 135 (329)
..+.+|||||++.+...+..+++.+|+++ +
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i-----------------------------------------~ 122 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAI-----------------------------------------V 122 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEE-----------------------------------------E
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEE-----------------------------------------E
Confidence 88999999999999999999999999999 9
Q ss_pred EEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC----hhhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 136 MVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN----ALDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 136 V~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~----~~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|||++++.+++.+..|+.++... .++|+++|+||+|+.. ..++++++++.+++++++||+++.+.+++++.+.
T Consensus 123 v~D~~~~~s~~~~~~~~~~i~~~---~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 199 (208)
T 3clv_A 123 VFDISNSNTLDRAKTWVNQLKIS---SNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLA 199 (208)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH---SCCEEEEEEECTTCC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhh---CCCcEEEEEECCCcccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Confidence 99999999999999999888764 2399999999999432 1567888999999999999999777777776553
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-25 Score=193.47 Aligned_cols=151 Identities=19% Similarity=0.386 Sum_probs=129.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
...+||+++|++|||||||++++.++.+...+.+|++..+.. ++...+.+.+|||||++++..++..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 456899999999999999999999999887888888866542 3566789999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++.+++.+..|+.++.... ..++|+++|+||+
T Consensus 86 -----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~ 123 (203)
T 1zbd_A 86 -----------------------------------------LMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKC 123 (203)
T ss_dssp -----------------------------------------EEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECT
T ss_pred -----------------------------------------EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECc
Confidence 9999999999999999988886542 3578999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|+.+. .+++++++.++++++++||+++.+.+++++.+
T Consensus 124 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 165 (203)
T 1zbd_A 124 DMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL 165 (203)
T ss_dssp TCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred ccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH
Confidence 99763 45778999999999999999976666666554
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-25 Score=198.11 Aligned_cols=154 Identities=27% Similarity=0.419 Sum_probs=131.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCc----------eEEEEEEecCCCccccchH
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKG----------NVTIKVWDIGGQPRFRSMW 82 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~----------~~~l~I~DtpG~e~~~~~~ 82 (329)
+++.+||+++|++|||||||+++|.++.+...+.+|++.++.. ++.. .+.+.+|||||+++++..+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 101 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 101 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence 4567999999999999999999999999887888888876642 3343 7889999999999999999
Q ss_pred HHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCC
Q psy2970 83 ERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLI 162 (329)
Q Consensus 83 ~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~ 162 (329)
..+++.+|+++ +|||++++.+++.+..|+.++.......
T Consensus 102 ~~~~~~~d~ii-----------------------------------------lV~D~~~~~s~~~~~~~l~~i~~~~~~~ 140 (217)
T 2f7s_A 102 TAFFRDAMGFL-----------------------------------------LMFDLTSQQSFLNVRNWMSQLQANAYCE 140 (217)
T ss_dssp HHHHTTCCEEE-----------------------------------------EEEETTCHHHHHHHHHHHHTCCCCCTTT
T ss_pred HHHhcCCCEEE-----------------------------------------EEEECcCHHHHHHHHHHHHHHHHhcCcC
Confidence 99999999999 9999999999999999988876554446
Q ss_pred CCcEEEEEEcCCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 163 GIPILVLGNKRDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 163 ~iPIiLVgNK~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
++|++||+||+|+.+. .+++++++.++++++++||+++..++++++.+.
T Consensus 141 ~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 194 (217)
T 2f7s_A 141 NPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLL 194 (217)
T ss_dssp CCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHH
T ss_pred CCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHH
Confidence 8999999999999653 567889999999999999999777777776553
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-25 Score=194.34 Aligned_cols=152 Identities=24% Similarity=0.400 Sum_probs=131.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--E--eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~--i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
+..+||+++|++|||||||++++.++.+...+.||++.++. . +++..+.+.+|||||+++++..+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 45799999999999999999999999998888888886654 2 4566789999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++.+++.+..|+..+.... ..++|++||+||+
T Consensus 86 -----------------------------------------lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~ 123 (206)
T 2bcg_Y 86 -----------------------------------------IVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKC 123 (206)
T ss_dssp -----------------------------------------EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECT
T ss_pred -----------------------------------------EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECC
Confidence 9999999999999999988886543 3579999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.+. .++.++++..+++++++||+++.+.+++++.+.
T Consensus 124 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 166 (206)
T 2bcg_Y 124 DLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMA 166 (206)
T ss_dssp TCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHH
T ss_pred CCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99763 467788899999999999999777777776553
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-25 Score=192.24 Aligned_cols=151 Identities=22% Similarity=0.258 Sum_probs=124.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCC-----------CCCceeeeEEE-----eeCceEEEEEEecCCCccccc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQD-----------MIPTVGFNMRK-----ITKGNVTIKVWDIGGQPRFRS 80 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~-----------~~pTig~~~~~-----i~~~~~~l~I~DtpG~e~~~~ 80 (329)
.++.+||+++|++|||||||++.+.+. +... +.||++.++.. ++++.+.+++|||||+++++.
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred cccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 456799999999999999999766553 3333 45688877653 456788999999999999999
Q ss_pred hHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECC------CcccHHHHHHHHHH
Q psy2970 81 MWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAA------DTDKLEASRNELHA 154 (329)
Q Consensus 81 ~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt------~~~S~~~~~~~l~~ 154 (329)
++..+++++|+++ +|||++ +.++|+.+..|+.+
T Consensus 90 ~~~~~~~~~d~~i-----------------------------------------~v~D~~~~~~~~~~~s~~~l~~~l~~ 128 (198)
T 3t1o_A 90 SRKLILRGVDGIV-----------------------------------------FVADSAPNRLRANAESMRNMRENLAE 128 (198)
T ss_dssp HHHHHTTTCCEEE-----------------------------------------EEEECCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCEEE-----------------------------------------EEEECCcchhhHhHHHHHHHHHHHHh
Confidence 9999999999999 999999 56778888888887
Q ss_pred HHhCCcCCCCcEEEEEEcCCCCCh---hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 155 LIEKPQLIGIPILVLGNKRDLPNA---LDEKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 155 i~~~~~~~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
+. ....++|++||+||+|+.++ .+++++++++++ +++++||+++.+++++++.+.
T Consensus 129 ~~--~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 187 (198)
T 3t1o_A 129 YG--LTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVS 187 (198)
T ss_dssp TT--CCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHH
T ss_pred hc--cccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHH
Confidence 73 23578999999999999765 567788888899 999999999877777776553
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-25 Score=196.65 Aligned_cols=151 Identities=19% Similarity=0.290 Sum_probs=127.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
.++.+||+++|++|||||||++++.++.+...+.||++..+.. ++...+.+.+|||||++++..++..+++++|+++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 3567999999999999999999999999988888999877643 3567789999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHH-HHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEAS-RNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~-~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+|||++++++|+.+ ..|+..+.+. ..++|++||+||
T Consensus 105 -----------------------------------------lv~D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK 141 (205)
T 1gwn_A 105 -----------------------------------------ICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCK 141 (205)
T ss_dssp -----------------------------------------EEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEEC
T ss_pred -----------------------------------------EEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEec
Confidence 99999999999998 5777776553 257999999999
Q ss_pred CCCCC-----------------hhhHHHHHHHhC-CcEEEEecc-chHHHHHHhhhh
Q psy2970 173 RDLPN-----------------ALDEKELIDRIM-IDFWITLTL-LIRWCESFLHHF 210 (329)
Q Consensus 173 ~Dl~~-----------------~~e~~~l~~~~~-~~~~etSAk-~~~~~~~~l~~i 210 (329)
+|+.+ ..++++++++++ .+++++||+ ++.+.+++++.+
T Consensus 142 ~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l 198 (205)
T 1gwn_A 142 SDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 198 (205)
T ss_dssp GGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHH
T ss_pred hhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHH
Confidence 99963 145778899988 699999999 577777776654
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-25 Score=188.02 Aligned_cols=152 Identities=20% Similarity=0.342 Sum_probs=124.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
.+.+||+++|++|||||||++++.++.+...+.||++.++.. ++++.+.+.+|||||+++++..+..+++.+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 84 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL 84 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEE
Confidence 457999999999999999999999999887888888876542 3556689999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC---cCCCCcEEEEE
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP---QLIGIPILVLG 170 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~---~~~~iPIiLVg 170 (329)
+|||++++.+++.+..|+.++.... ...++|+++|+
T Consensus 85 -----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~ 123 (177)
T 1wms_A 85 -----------------------------------------LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 123 (177)
T ss_dssp -----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEE
T ss_pred -----------------------------------------EEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEE
Confidence 9999999999999988888776532 23678999999
Q ss_pred EcCCCCCh----hhHHHHHH-HhCCcEEEEeccchHHHHHHhhhh
Q psy2970 171 NKRDLPNA----LDEKELID-RIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 171 NK~Dl~~~----~e~~~l~~-~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
||+|+.+. .+++++++ ..+.+++++||+++.+++++++.+
T Consensus 124 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 168 (177)
T 1wms_A 124 NKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEA 168 (177)
T ss_dssp ECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHH
T ss_pred ECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHH
Confidence 99999642 55777777 567899999999977777776654
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-25 Score=195.85 Aligned_cols=156 Identities=21% Similarity=0.338 Sum_probs=118.3
Q ss_pred HhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhc
Q psy2970 13 KSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRG 88 (329)
Q Consensus 13 ~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ 88 (329)
++...++.+||+++|++|||||||++++.++.+...+.+|++.++. .++++.+.+.+|||||++++...+..+++.
T Consensus 21 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 100 (199)
T 2p5s_A 21 KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRK 100 (199)
T ss_dssp -------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHH
T ss_pred CCcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhh
Confidence 3444567899999999999999999999999987777888886543 246667899999999999999999999999
Q ss_pred cceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEE
Q psy2970 89 VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILV 168 (329)
Q Consensus 89 ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiL 168 (329)
+|+++ +|||++++.+++.+..|+..+.+. ...++|++|
T Consensus 101 ~d~ii-----------------------------------------lv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piil 138 (199)
T 2p5s_A 101 ADGVL-----------------------------------------LLYDVTCEKSFLNIREWVDMIEDA-AHETVPIML 138 (199)
T ss_dssp CSEEE-----------------------------------------EEEETTCHHHHHTHHHHHHHHHHH-C---CCEEE
T ss_pred CCEEE-----------------------------------------EEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEE
Confidence 99999 999999999999999888877553 235799999
Q ss_pred EEEcCCCCC-----------hhhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 169 LGNKRDLPN-----------ALDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 169 VgNK~Dl~~-----------~~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|+||+|+.+ ..++++++++++++++++||+++.++++++..+
T Consensus 139 v~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l 191 (199)
T 2p5s_A 139 VGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHL 191 (199)
T ss_dssp EEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHH
Confidence 999999952 245778899999999999999977777766554
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-25 Score=193.96 Aligned_cols=152 Identities=16% Similarity=0.211 Sum_probs=121.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
..+.+||+++|++|||||||++++.++.+...+.||++..+.. +++..+.+.+|||||+++++.++..+++++|+++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 96 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFL 96 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEE
Confidence 4568999999999999999999999999888888998877643 3556688999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHH-HHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~-~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+|||++++++|+.+. .|+..+... ..++|++||+||
T Consensus 97 -----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK 133 (201)
T 2q3h_A 97 -----------------------------------------LCFSVVSPSSFQNVSEKWVPEIRCH--CPKAPIILVGTQ 133 (201)
T ss_dssp -----------------------------------------EEEETTCHHHHHHHHHTHHHHHHHH--CSSSCEEEEEEC
T ss_pred -----------------------------------------EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEC
Confidence 999999999999997 677777654 248999999999
Q ss_pred CCCCCh-----------------hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 173 RDLPNA-----------------LDEKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 173 ~Dl~~~-----------------~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+.+. .++.++++.++. +++++||+++.+.+++++.+.
T Consensus 134 ~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 190 (201)
T 2q3h_A 134 SDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAI 190 (201)
T ss_dssp GGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred HhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHH
Confidence 998641 357788889997 899999999777777776553
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-25 Score=190.21 Aligned_cols=152 Identities=20% Similarity=0.294 Sum_probs=120.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
+++||+++|++|||||||++++.++.+...+.+|++..+.. +++..+.+.+|||||++++...+..+++.+|+++
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i-- 97 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL-- 97 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEE--
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE--
Confidence 56899999999999999999999998887778888766643 4566788999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++.+++.+..|+..+.......++|+++|+||+|+
T Consensus 98 ---------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl 138 (190)
T 3con_A 98 ---------------------------------------CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL 138 (190)
T ss_dssp ---------------------------------------EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTC
T ss_pred ---------------------------------------EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcC
Confidence 99999999999999988888766433457999999999998
Q ss_pred CCh----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 176 PNA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 176 ~~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.+. .++++++++++++++++||+++.+.+++++.+.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 178 (190)
T 3con_A 139 PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLV 178 (190)
T ss_dssp SCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 752 568889999999999999999777777776553
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-25 Score=196.93 Aligned_cols=150 Identities=21% Similarity=0.280 Sum_probs=127.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
.+.+||+++|++|||||||++++.++.+...+.||++..+.. +++..+.+.+|||||+++++.++..+++++|+++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i- 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV- 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE-
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE-
Confidence 467999999999999999999999999988888999877653 4566789999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHH-HHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~-~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++|+.+. .|+..+... ..++|++||+||+
T Consensus 86 ----------------------------------------lv~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~ 123 (212)
T 2j0v_A 86 ----------------------------------------LAFSLISKASYENVLKKWMPELRRF--APNVPIVLVGTKL 123 (212)
T ss_dssp ----------------------------------------EEEETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECH
T ss_pred ----------------------------------------EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeCH
Confidence 999999999999987 677777553 2479999999999
Q ss_pred CCCCh-------------hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhh
Q psy2970 174 DLPNA-------------LDEKELIDRIMI-DFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 174 Dl~~~-------------~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i 210 (329)
|+.+. .++++++++++. +++++||+++.+.+++++.+
T Consensus 124 Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 174 (212)
T 2j0v_A 124 DLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTA 174 (212)
T ss_dssp HHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHH
T ss_pred HhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHH
Confidence 98543 456788899996 99999999977777777655
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-25 Score=189.97 Aligned_cols=150 Identities=18% Similarity=0.257 Sum_probs=127.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
.+.+||+++|++|||||||++++.++.+...+.+|++..+.. +++..+.+.+|||||+++++.++..+++.+|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i- 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL- 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE-
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE-
Confidence 367999999999999999999999999888888888866542 4667789999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHH-HHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~-~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++.+++... .|+..+.+. ..++|+++|+||+
T Consensus 82 ----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~ 119 (186)
T 1mh1_A 82 ----------------------------------------ICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKL 119 (186)
T ss_dssp ----------------------------------------EEEETTCHHHHHHHHHTHHHHHHHH--STTSCEEEEEECH
T ss_pred ----------------------------------------EEEECCChhhHHHHHHHHHHHHHHh--CCCCCEEEEeEcc
Confidence 999999999999987 577666553 2489999999999
Q ss_pred CCCCh-----------------hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhh
Q psy2970 174 DLPNA-----------------LDEKELIDRIMI-DFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 174 Dl~~~-----------------~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i 210 (329)
|+.+. .++.+++++++. +++++||+++.+.+++++.+
T Consensus 120 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 174 (186)
T 1mh1_A 120 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 174 (186)
T ss_dssp HHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHH
T ss_pred cccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHH
Confidence 98642 346678888887 99999999977777777655
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.93 E-value=5.3e-26 Score=197.17 Aligned_cols=152 Identities=20% Similarity=0.377 Sum_probs=131.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
...+||+++|++|||||||++++.++.+...+.+|++.++. .++.+.+.+.+|||||++.+..++..+++.+|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 45799999999999999999999999988777788775544 24667899999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++|+.+..|+..+... ...++|++||+||+
T Consensus 101 -----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~ 138 (191)
T 3dz8_A 101 -----------------------------------------LMYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKC 138 (191)
T ss_dssp -----------------------------------------EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECT
T ss_pred -----------------------------------------EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECC
Confidence 999999999999999998888663 24689999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.+. .+++++++.++++++++||+++.+++++++.+.
T Consensus 139 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 181 (191)
T 3dz8_A 139 DMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLV 181 (191)
T ss_dssp TCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred CCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 99653 567889999999999999999777777776553
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-25 Score=190.84 Aligned_cols=153 Identities=18% Similarity=0.273 Sum_probs=129.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
.+.+||+++|++|||||||++++.++.+...+.||++..+.. ++...+.+.+|||||++++..++..+++.+|+++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i- 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI- 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE-
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE-
Confidence 467999999999999999999999999887788888876654 3566789999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC-cCCCCcEEEEEEcC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP-QLIGIPILVLGNKR 173 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~-~~~~iPIiLVgNK~ 173 (329)
+|||++++.+++.+..|+..+.+.. ...++|+++|+||+
T Consensus 85 ----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~ 124 (199)
T 2gf0_A 85 ----------------------------------------LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKC 124 (199)
T ss_dssp ----------------------------------------EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECT
T ss_pred ----------------------------------------EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 9999999999998888776665421 13578999999999
Q ss_pred CCCCh----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.+. .++.++++.++++++++||+++.+.+++++.+.
T Consensus 125 Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 166 (199)
T 2gf0_A 125 DETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELL 166 (199)
T ss_dssp TCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred cCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Confidence 99753 557788899999999999999777777776553
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-25 Score=196.00 Aligned_cols=153 Identities=22% Similarity=0.333 Sum_probs=120.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhcccee
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAI 92 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~i 92 (329)
.++.+||+++|++|||||||++++.++.+...+.+|++.++.. +++..+.+.+|||||++++..++..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 3567999999999999999999999999887788888865432 345568999999999999999999999999999
Q ss_pred EeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 93 VWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+ +|||++++.+++.+..|+.++.... ..++|+++|+||
T Consensus 102 i-----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK 139 (200)
T 2o52_A 102 L-----------------------------------------LVYDITSRETYNSLAAWLTDARTLA-SPNIVVILCGNK 139 (200)
T ss_dssp E-----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEEC
T ss_pred E-----------------------------------------EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEEC
Confidence 9 9999999999999999988886542 267999999999
Q ss_pred CCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 173 RDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 173 ~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+.+. .++.+++++.+++++++||+++.+++++++.+.
T Consensus 140 ~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~ 183 (200)
T 2o52_A 140 KDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCA 183 (200)
T ss_dssp GGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHH
T ss_pred CCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999643 467788999999999999999877777776553
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.1e-25 Score=187.13 Aligned_cols=154 Identities=21% Similarity=0.360 Sum_probs=115.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--Ee--e-CceEEEEEEecCCCccccchHHHHhhccce
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--KI--T-KGNVTIKVWDIGGQPRFRSMWERYCRGVNA 91 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~i--~-~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~ 91 (329)
.++.+||+++|++|||||||++++.++.+...+.||++.++. .+ + .....+.+|||||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 356799999999999999999999999988788888875543 23 3 456899999999999999999999999999
Q ss_pred eEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC---cCCCCcEEE
Q psy2970 92 IVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP---QLIGIPILV 168 (329)
Q Consensus 92 iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~---~~~~iPIiL 168 (329)
++ +|||++++.+++.+..|+.++.... ...++|+++
T Consensus 85 ~i-----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~il 123 (182)
T 1ky3_A 85 CV-----------------------------------------LVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVI 123 (182)
T ss_dssp EE-----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEE
T ss_pred EE-----------------------------------------EEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEE
Confidence 99 9999999999999999988876532 236799999
Q ss_pred EEEcCCCCCh------hhHHHHHH-HhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 169 LGNKRDLPNA------LDEKELID-RIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 169 VgNK~Dl~~~------~e~~~l~~-~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+||+|+.+. .+++++++ ..+.+++++||+++.+.+++++.+.
T Consensus 124 v~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 173 (182)
T 1ky3_A 124 LGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIA 173 (182)
T ss_dssp EEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHH
T ss_pred EEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHH
Confidence 9999999542 45677777 4568999999999877777776553
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-25 Score=196.44 Aligned_cols=151 Identities=19% Similarity=0.293 Sum_probs=108.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
.+.+||+++|++|||||||++++.++.+...+.||++..+.. +++..+.+.+|||||++++..++..+++++|+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i- 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL- 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEE-
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE-
Confidence 467999999999999999999999999887888888776542 4567789999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHH-HHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~-~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++.+|+.+. .|+..+.+. ..++|++||+||+
T Consensus 111 ----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~ 148 (214)
T 2j1l_A 111 ----------------------------------------LCFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKT 148 (214)
T ss_dssp ----------------------------------------EEEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECG
T ss_pred ----------------------------------------EEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECh
Confidence 999999999999987 577776543 3579999999999
Q ss_pred CCCCh-----------------hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----------------LDEKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----------------~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.+. .++.+++++++. +++++||+++.+.+++++.+.
T Consensus 149 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~ 204 (214)
T 2j1l_A 149 DLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAA 204 (214)
T ss_dssp GGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHH
T ss_pred hhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHH
Confidence 99754 245788889997 899999999777777776553
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.1e-25 Score=191.81 Aligned_cols=152 Identities=17% Similarity=0.333 Sum_probs=121.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--E--eeCceEEEEEEecCCCccccchHHHHhhcccee
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAI 92 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~--i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~i 92 (329)
....+||+++|++|||||||++++.++.+...+.+|++.++. . ++++.+.+.+|||||++++..++..+++.+|++
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i 102 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI 102 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 345799999999999999999999999887777788876553 2 345668999999999999999999999999999
Q ss_pred EeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 93 VWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+ +|||++++.+++.+..|+..+... ...++|++||+||
T Consensus 103 i-----------------------------------------lV~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilV~NK 140 (192)
T 2il1_A 103 I-----------------------------------------LVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNK 140 (192)
T ss_dssp E-----------------------------------------EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEEC
T ss_pred E-----------------------------------------EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEEC
Confidence 9 999999999999998887776543 2357999999999
Q ss_pred CCCCCh-----hhHHHHHHHh-CCcEEEEeccchHHHHHHhhhh
Q psy2970 173 RDLPNA-----LDEKELIDRI-MIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 173 ~Dl~~~-----~e~~~l~~~~-~~~~~etSAk~~~~~~~~l~~i 210 (329)
+|+.+. .+++++++++ +.+++++||+++.+.+++++.+
T Consensus 141 ~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 184 (192)
T 2il1_A 141 LDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 184 (192)
T ss_dssp GGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHH
T ss_pred cccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHH
Confidence 999653 4567788875 7899999999977777777654
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.92 E-value=9.7e-25 Score=190.84 Aligned_cols=153 Identities=22% Similarity=0.397 Sum_probs=128.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--E--eeCceEEEEEEecCCCccccchHHHHhhcccee
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAI 92 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~--i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~i 92 (329)
..+.+||+++|++|||||||++++.++++...+.||++.++. . +++..+.+.+|||||++.+...+..+++.+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 456799999999999999999999999988778888886554 2 345568999999999999999999999999999
Q ss_pred EeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 93 VWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+ +|||++++.+++.+..|+..+.... ..++|+++|+||
T Consensus 97 i-----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK 134 (213)
T 3cph_A 97 I-----------------------------------------LVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNK 134 (213)
T ss_dssp E-----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEEC
T ss_pred E-----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEEC
Confidence 9 9999999999999999988886642 247899999999
Q ss_pred CCCCCh----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 173 RDLPNA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 173 ~Dl~~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+... .+.++++++++++++++||+++..++++++.+.
T Consensus 135 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 177 (213)
T 3cph_A 135 SDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 177 (213)
T ss_dssp TTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHH
T ss_pred CCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999543 567788999999999999999776676665553
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-25 Score=193.89 Aligned_cols=153 Identities=16% Similarity=0.261 Sum_probs=95.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCCceeeeEE--Ee--eCc--eEEEEEEecCCCccccchHHHHhhcc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG--QFSQDMIPTVGFNMR--KI--TKG--NVTIKVWDIGGQPRFRSMWERYCRGV 89 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~--~~~~~~~pTig~~~~--~i--~~~--~~~l~I~DtpG~e~~~~~~~~~~~~a 89 (329)
++.+||+++|++|||||||++++.++ .+...+.+|++.++. .+ ++. .+.+.+|||||++++..++..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 45689999999999999999999998 777788889885443 33 344 78999999999999999999999999
Q ss_pred ceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCc--CCCCcEE
Q psy2970 90 NAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQ--LIGIPIL 167 (329)
Q Consensus 90 d~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~--~~~iPIi 167 (329)
|+++ +|||++++.+|+.+..|+..+..... ..++|++
T Consensus 98 d~~i-----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pii 136 (208)
T 2yc2_C 98 YYAI-----------------------------------------LVFDVSSMESFESCKAWFELLKSARPDRERPLRAV 136 (208)
T ss_dssp CEEE-----------------------------------------EEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEE
T ss_pred cEEE-----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEE
Confidence 9999 99999999999999999998876533 2589999
Q ss_pred EEEEcCCCCC-h-----hhHHHHHHHhCCcEEEEeccc-hHHHHHHhhhhc
Q psy2970 168 VLGNKRDLPN-A-----LDEKELIDRIMIDFWITLTLL-IRWCESFLHHFG 211 (329)
Q Consensus 168 LVgNK~Dl~~-~-----~e~~~l~~~~~~~~~etSAk~-~~~~~~~l~~i~ 211 (329)
||+||+|+.+ . .++++++++++++++++||++ +.+.+++++.+.
T Consensus 137 lv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~ 187 (208)
T 2yc2_C 137 LVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIA 187 (208)
T ss_dssp EEEECC-------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHH
T ss_pred EEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHH
Confidence 9999999976 2 567889999999999999999 888888776654
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=9.5e-25 Score=190.09 Aligned_cols=153 Identities=23% Similarity=0.362 Sum_probs=128.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
++.+||+++|++|||||||++++.++.+...+.+|++.++.. +++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV 85 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence 567999999999999999999999999888888888866543 3456789999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC---cCCCCcEEEEE
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP---QLIGIPILVLG 170 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~---~~~~iPIiLVg 170 (329)
+|||++++.+++.+..|+.++.... ...++|+++|+
T Consensus 86 -----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~ 124 (207)
T 1vg8_A 86 -----------------------------------------LVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLG 124 (207)
T ss_dssp -----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEE
T ss_pred -----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEE
Confidence 9999999999999988888776532 12578999999
Q ss_pred EcCCCCCh----hhHHHHHH-HhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 171 NKRDLPNA----LDEKELID-RIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 171 NK~Dl~~~----~e~~~l~~-~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
||+|+.+. .+++++++ ..+++++++||+++.+.+++++.+.
T Consensus 125 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 170 (207)
T 1vg8_A 125 NKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170 (207)
T ss_dssp ECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHH
T ss_pred ECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHH
Confidence 99999743 45666776 6678999999999777777776653
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-24 Score=192.16 Aligned_cols=152 Identities=17% Similarity=0.234 Sum_probs=125.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
..+.+||+++|++|||||||++++.++.+...+.+|++..+.. +++..+.+.+|||||++++..++..+++++|+++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 5678999999999999999999999999988888888876653 4667788999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHH-HHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~-~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+|||++++.+++.+. .|+..+... ..++|+++|+||
T Consensus 107 -----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK 143 (204)
T 4gzl_A 107 -----------------------------------------ICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTK 143 (204)
T ss_dssp -----------------------------------------EEEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEEC
T ss_pred -----------------------------------------EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEec
Confidence 999999999999997 666666544 267999999999
Q ss_pred CCCCCh-----------------hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 173 RDLPNA-----------------LDEKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 173 ~Dl~~~-----------------~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+.+. .++.+++++++. +++++||+++.+++++++.+.
T Consensus 144 ~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~ 200 (204)
T 4gzl_A 144 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200 (204)
T ss_dssp HHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred hhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHH
Confidence 998653 346678888886 599999999888888776653
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-24 Score=190.91 Aligned_cols=151 Identities=21% Similarity=0.302 Sum_probs=127.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
..++||+++|++|||||||++++.++.+...+.||++..+.. +++..+.+.+|||||++++..++..+++.+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i- 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL- 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE-
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE-
Confidence 457999999999999999999999999888888888876632 4566789999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHH-HHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEAS-RNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~-~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++++.+ ..|+..+.+. ..++|+++|+||+
T Consensus 102 ----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~ 139 (201)
T 2gco_A 102 ----------------------------------------MCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKK 139 (201)
T ss_dssp ----------------------------------------EEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECG
T ss_pred ----------------------------------------EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEecH
Confidence 99999999999998 4566555443 2579999999999
Q ss_pred CCCCh-----------------hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----------------LDEKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----------------~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.+. .++.+++++++. +++++||+++.+++++++.+.
T Consensus 140 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~ 195 (201)
T 2gco_A 140 DLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMAT 195 (201)
T ss_dssp GGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred HhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHH
Confidence 99653 346678888888 899999999877787776553
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.5e-25 Score=195.74 Aligned_cols=151 Identities=21% Similarity=0.357 Sum_probs=121.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
...+||+++|++|||||||+++|.++.+...+.||++.++.. +++..+.+.+|||||++++..++..+++.+|+++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 456999999999999999999999999887778888865542 3455689999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++.+|+.+..|+.++.... ..++|++||+||+
T Consensus 91 -----------------------------------------lV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~ 128 (223)
T 3cpj_B 91 -----------------------------------------IVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKS 128 (223)
T ss_dssp -----------------------------------------EEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCG
T ss_pred -----------------------------------------EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECc
Confidence 9999999999999999998886542 3578999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|+.+. .++.+++++.+++++++||+++.+.+++++.+
T Consensus 129 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 170 (223)
T 3cpj_B 129 DLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEEL 170 (223)
T ss_dssp GGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99653 56788899999999999999977677766554
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-24 Score=194.99 Aligned_cols=152 Identities=18% Similarity=0.203 Sum_probs=120.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCCceeeeEE----EeeCceEEEEEEecCCCcc-ccchHHHHhhccc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQ--FSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPR-FRSMWERYCRGVN 90 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~--~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~-~~~~~~~~~~~ad 90 (329)
...+||+++|++|||||||+++|.+.. +...+ ++++.++. .+++..+.+.+|||+|++. ++.+...+++.++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~ 113 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 113 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence 456999999999999999999999644 33333 34554432 2466778899999999987 4556677788899
Q ss_pred eeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEE
Q psy2970 91 AIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLG 170 (329)
Q Consensus 91 ~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVg 170 (329)
+++ +|||++++++|+.+..|+..+.+.....++|++|||
T Consensus 114 ~~i-----------------------------------------lVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVg 152 (211)
T 2g3y_A 114 AYL-----------------------------------------IVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 152 (211)
T ss_dssp EEE-----------------------------------------EEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEE
T ss_pred EEE-----------------------------------------EEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEE
Confidence 999 999999999999999998887654334689999999
Q ss_pred EcCCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 171 NKRDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 171 NK~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
||+|+.+. .+++.+++.++++|+||||+++.+++++++.+.
T Consensus 153 NK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~ 198 (211)
T 2g3y_A 153 NKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIV 198 (211)
T ss_dssp ECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred EChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999643 456678889999999999999777777776653
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.5e-24 Score=188.63 Aligned_cols=151 Identities=21% Similarity=0.290 Sum_probs=120.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
.+++||+++|++|||||||++++.++.+...+.||++..+.. +++..+.+.+|||||++++..++..+++.+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i- 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL- 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE-
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE-
Confidence 457899999999999999999999999887888888876642 4566789999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHH-HHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEAS-RNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~-~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++++.+ ..|+..+.+. ..++|+++|+||+
T Consensus 102 ----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~ 139 (207)
T 2fv8_A 102 ----------------------------------------MCFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKK 139 (207)
T ss_dssp ----------------------------------------EEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECG
T ss_pred ----------------------------------------EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEch
Confidence 99999999999998 5566666443 3579999999999
Q ss_pred CCCCh-----------------hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----------------LDEKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----------------~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.+. .++.+++++++. +++++||+++.+++++++.+.
T Consensus 140 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~ 195 (207)
T 2fv8_A 140 DLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETAT 195 (207)
T ss_dssp GGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred hhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHH
Confidence 99643 245677888887 899999999877887776653
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-24 Score=205.86 Aligned_cols=153 Identities=31% Similarity=0.597 Sum_probs=129.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
.++++||+|+|++|||||||+++|.++.+... .||++..+..++.+.+.+.||||||++.+..++..+++.+|+++
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi--- 237 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI--- 237 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEE---
T ss_pred ccCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEE---
Confidence 45678999999999999999999999988644 47999988888889999999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+.+..++.+++......++|++||+||+|+.
T Consensus 238 --------------------------------------lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~ 279 (329)
T 3o47_A 238 --------------------------------------FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 279 (329)
T ss_dssp --------------------------------------EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred --------------------------------------EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCC
Confidence 999999999999999999999887666789999999999999
Q ss_pred ChhhHHHHHHHhCC--------cEEEEeccchHHHHHHhhhhc
Q psy2970 177 NALDEKELIDRIMI--------DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 177 ~~~e~~~l~~~~~~--------~~~etSAk~~~~~~~~l~~i~ 211 (329)
+..+.+++.++++. +++++||+++.+++++++.+.
T Consensus 280 ~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~ 322 (329)
T 3o47_A 280 NAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLS 322 (329)
T ss_dssp TCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred cccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHH
Confidence 87666777777653 589999999877787776553
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=4.6e-25 Score=195.75 Aligned_cols=151 Identities=23% Similarity=0.362 Sum_probs=128.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhcccee
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAI 92 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~i 92 (329)
....+||+++|++|||||||++++..+.+...+.+|.|.++.. ++.+.+.+.+|||||++.+..++..+++++|++
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 91 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCA 91 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEE
Confidence 4567999999999999999999988777666667777765543 456778999999999999999999999999999
Q ss_pred EeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 93 VWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+ +|||++++.+++.+..|+..+... ..++|+++|+||
T Consensus 92 i-----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK 128 (221)
T 3gj0_A 92 I-----------------------------------------IMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNK 128 (221)
T ss_dssp E-----------------------------------------EEEETTCHHHHHTHHHHHHHHHHH--STTCCEEEEEEC
T ss_pred E-----------------------------------------EEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEC
Confidence 9 999999999999999999988765 358999999999
Q ss_pred CCCCCh---hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 173 RDLPNA---LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 173 ~Dl~~~---~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+|+.+. .+..++++..+++++++||+++.+++++++.+
T Consensus 129 ~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 169 (221)
T 3gj0_A 129 VDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 169 (221)
T ss_dssp TTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHH
T ss_pred CccccccccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 999764 45667888999999999999966666665544
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7e-24 Score=185.82 Aligned_cols=152 Identities=18% Similarity=0.193 Sum_probs=116.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCCceeeeEE----EeeCceEEEEEEecCCCcc-ccchHHHHhhccc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG--QFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPR-FRSMWERYCRGVN 90 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~--~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~-~~~~~~~~~~~ad 90 (329)
...+||+++|++|||||||+++|.+. .+...+ ++++.++. .+++..+.+.+|||+|++. ++.++..+++.++
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 45799999999999999999999963 333333 34444432 2466778899999999876 5567788899999
Q ss_pred eeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEE
Q psy2970 91 AIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLG 170 (329)
Q Consensus 91 ~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVg 170 (329)
+++ +|||++++++|+....|+..+.+.....++|+++|+
T Consensus 83 ~~i-----------------------------------------~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~ 121 (192)
T 2cjw_A 83 AYL-----------------------------------------IVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 121 (192)
T ss_dssp EEE-----------------------------------------EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred EEE-----------------------------------------EEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEE
Confidence 999 999999999999999988877654334579999999
Q ss_pred EcCCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 171 NKRDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 171 NK~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
||+|+.+. .+++.++..++++|+||||+++.+.+++++.+.
T Consensus 122 NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~ 167 (192)
T 2cjw_A 122 NKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIV 167 (192)
T ss_dssp ECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred echhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHH
Confidence 99999643 456677888999999999999777777776553
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=9.7e-25 Score=188.82 Aligned_cols=148 Identities=19% Similarity=0.308 Sum_probs=112.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCCceeeeEEEe-------eCceEEEEEEecCCCccccchHHHHhhccc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASG--QFSQDMIPTVGFNMRKI-------TKGNVTIKVWDIGGQPRFRSMWERYCRGVN 90 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~--~~~~~~~pTig~~~~~i-------~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad 90 (329)
++||+++|++|||||||++++.+. .+...+.||+|.++... +.+.+.+.+|||+|+++++.++..++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999985 45566789998887643 235678999999999999999999999999
Q ss_pred eeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc-ccHHHHHHHHHHHHhCCcCCCCcEEEE
Q psy2970 91 AIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT-DKLEASRNELHALIEKPQLIGIPILVL 169 (329)
Q Consensus 91 ~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~-~S~~~~~~~l~~i~~~~~~~~iPIiLV 169 (329)
+++ +|||++++ .+++.+..|+.++... ..++|+++|
T Consensus 82 ~~i-----------------------------------------~v~d~~~~~~s~~~~~~~~~~~~~~--~~~~piilv 118 (184)
T 2zej_A 82 LYL-----------------------------------------AVYDLSKGQAEVDAMKPWLFNIKAR--ASSSPVILV 118 (184)
T ss_dssp EEE-----------------------------------------EEEEGGGCHHHHHTHHHHHHHHHHH--CTTCEEEEE
T ss_pred EEE-----------------------------------------EEEeCCcchhHHHHHHHHHHHHHhh--CCCCcEEEE
Confidence 999 99999997 5799999999888654 247899999
Q ss_pred EEcCCCCChhh--------HHHHHHHhCCc----EEEEeccch-HHHHHHhhhh
Q psy2970 170 GNKRDLPNALD--------EKELIDRIMID----FWITLTLLI-RWCESFLHHF 210 (329)
Q Consensus 170 gNK~Dl~~~~e--------~~~l~~~~~~~----~~etSAk~~-~~~~~~l~~i 210 (329)
|||+|+.++.. .++++++++++ ++++||++. +..+.+++.+
T Consensus 119 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i 172 (184)
T 2zej_A 119 GTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTI 172 (184)
T ss_dssp EECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHH
T ss_pred EECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHH
Confidence 99999987633 24455556776 999999997 4777777655
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-25 Score=195.20 Aligned_cols=152 Identities=24% Similarity=0.413 Sum_probs=122.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--E--eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--K--ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~--i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
.+.+||+++|++|||||||++++.++.+...+.+|++.++. . +++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 45699999999999999999999999887777777775543 2 4556689999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++++|+.+..|+..+... ...++|++||+||+
T Consensus 111 -----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~ 148 (199)
T 3l0i_B 111 -----------------------------------------VVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKC 148 (199)
T ss_dssp -----------------------------------------ECC-CCCSHHHHHHHHHHHHHHSC-C-CCSEEEEC-CCS
T ss_pred -----------------------------------------EEEECCCHHHHHHHHHHHHHHHHh-ccCCCCEEEEEECc
Confidence 999999999999999998888554 33589999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.+. .+++++++.++++++++||+++.+++++++.+.
T Consensus 149 Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~ 191 (199)
T 3l0i_B 149 DLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA 191 (199)
T ss_dssp SCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHT
T ss_pred cCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 99754 467889999999999999999888888887765
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-24 Score=190.60 Aligned_cols=151 Identities=19% Similarity=0.260 Sum_probs=124.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEe-----eCceEEEEEEecCCCccccchHHHHhhcccee
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI-----TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAI 92 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i-----~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~i 92 (329)
...+||+++|++|||||||++++.++.+...+.+|++...... .+..+.+.+|||||++++..++..+++.+|++
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA 88 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence 4679999999999999999999999988877778887665542 22338899999999999999999999999999
Q ss_pred EeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 93 VWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 93 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+ +|||++++.+++.+..|+..+.... ..++|+++|+||
T Consensus 89 i-----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK 126 (218)
T 4djt_A 89 I-----------------------------------------LFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANK 126 (218)
T ss_dssp E-----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEEC
T ss_pred E-----------------------------------------EEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEEC
Confidence 9 9999999999999998888876542 346899999999
Q ss_pred CCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 173 RDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 173 ~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+|+.+. .+..++++..+++++++||+++.+++++++.+
T Consensus 127 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 169 (218)
T 4djt_A 127 IDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHL 169 (218)
T ss_dssp TTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHH
T ss_pred CCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Confidence 999764 34667777888999999999966666666554
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.1e-23 Score=181.09 Aligned_cols=147 Identities=21% Similarity=0.285 Sum_probs=112.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE------Ee-eCceEEEEEEecCCCccccchH---HHHh
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR------KI-TKGNVTIKVWDIGGQPRFRSMW---ERYC 86 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~------~i-~~~~~~l~I~DtpG~e~~~~~~---~~~~ 86 (329)
.++.+||+++|++|||||||++++.+.... . +|++..+. .+ +++.+.+++|||||++++.... ..++
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 93 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSP-N--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF 93 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCCG-G--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCCC-c--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc
Confidence 467899999999999999999988775332 2 33332221 23 2677899999999999987766 8999
Q ss_pred hccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc--ccHHHHHHHHHHHHhCCcCCCC
Q psy2970 87 RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT--DKLEASRNELHALIEKPQLIGI 164 (329)
Q Consensus 87 ~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~--~S~~~~~~~l~~i~~~~~~~~i 164 (329)
+++|+++ +|||++++ ++++.+..|+.++... ..++
T Consensus 94 ~~~~~~i-----------------------------------------~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~ 130 (196)
T 3llu_A 94 RGTGALI-----------------------------------------YVIDAQDDYMEALTRLHITVSKAYKV--NPDM 130 (196)
T ss_dssp HTCSEEE-----------------------------------------EEEETTSCCHHHHHHHHHHHHHHHHH--CTTC
T ss_pred ccCCEEE-----------------------------------------EEEECCCchHHHHHHHHHHHHHHHhc--CCCC
Confidence 9999999 99999997 6777777777776432 3589
Q ss_pred cEEEEEEcCCCCCh------------hhHHHHHH----HhCCcEEEEeccchHHHHHHhhhh
Q psy2970 165 PILVLGNKRDLPNA------------LDEKELID----RIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 165 PIiLVgNK~Dl~~~------------~e~~~l~~----~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|++|||||+|+.+. .+.+++++ .++++|++|||++ .++++++..+
T Consensus 131 piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l 191 (196)
T 3llu_A 131 NFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKV 191 (196)
T ss_dssp EEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHH
T ss_pred cEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHH
Confidence 99999999998763 23566777 6788999999999 7777777654
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-25 Score=195.14 Aligned_cols=154 Identities=18% Similarity=0.255 Sum_probs=127.9
Q ss_pred cCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccce
Q psy2970 15 LFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNA 91 (329)
Q Consensus 15 ~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~ 91 (329)
.+.++.+||+++|++|||||||++++.++.+...+.+|++..+.. +++..+.+.+|||||++++...+..+++++|+
T Consensus 25 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 3th5_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV 104 (204)
Confidence 345678999999999999999999999998887788888766543 45667888999999999999999999999999
Q ss_pred eEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHH-HHHHHHHhCCcCCCCcEEEEE
Q psy2970 92 IVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASR-NELHALIEKPQLIGIPILVLG 170 (329)
Q Consensus 92 iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~-~~l~~i~~~~~~~~iPIiLVg 170 (329)
++ +|||++++.+++... .|+..+... ..++|+++|+
T Consensus 105 ii-----------------------------------------lv~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~ 141 (204)
T 3th5_A 105 FL-----------------------------------------ICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVG 141 (204)
Confidence 99 999999999999987 566655443 2379999999
Q ss_pred EcCCCCCh-----------------hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 171 NKRDLPNA-----------------LDEKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 171 NK~Dl~~~-----------------~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
||+|+.+. .++.+++++++. +++++||+++.+.+++++.+.
T Consensus 142 NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~ 200 (204)
T 3th5_A 142 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200 (204)
Confidence 99999653 335567778887 899999999888888776553
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.89 E-value=6.2e-23 Score=180.51 Aligned_cols=119 Identities=20% Similarity=0.293 Sum_probs=93.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCc---eEEEEEEecCCCccccc-hHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKG---NVTIKVWDIGGQPRFRS-MWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~---~~~l~I~DtpG~e~~~~-~~~~~~~~ad~iI 93 (329)
++.+||+++|++|||||||++++.++.+...+.++ +..+..+..+ .+.+.+|||||+++++. ++..+++++|+++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i 83 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV 83 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEE
Confidence 56799999999999999999999999887666544 4444444333 78999999999999988 8888999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc-cHHHHHHHHHHHHhC--CcCCCCcEEEEE
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD-KLEASRNELHALIEK--PQLIGIPILVLG 170 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~-S~~~~~~~l~~i~~~--~~~~~iPIiLVg 170 (329)
+|||+++.. ++.....++.+++.. ....++|++||+
T Consensus 84 -----------------------------------------~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~ 122 (214)
T 2fh5_B 84 -----------------------------------------FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIAC 122 (214)
T ss_dssp -----------------------------------------EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEE
T ss_pred -----------------------------------------EEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEE
Confidence 999999854 466776766665443 223579999999
Q ss_pred EcCCCCCh
Q psy2970 171 NKRDLPNA 178 (329)
Q Consensus 171 NK~Dl~~~ 178 (329)
||+|+.+.
T Consensus 123 nK~Dl~~~ 130 (214)
T 2fh5_B 123 NKQDIAMA 130 (214)
T ss_dssp ECTTSTTC
T ss_pred ECCCCCCc
Confidence 99999765
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-23 Score=202.80 Aligned_cols=148 Identities=20% Similarity=0.252 Sum_probs=114.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCC---CCCCceeeeEEEeeCceEEEEEEecCCCccccc---hHHHHhhccceeEee
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQ---DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS---MWERYCRGVNAIVWT 95 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~---~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~---~~~~~~~~ad~iI~~ 95 (329)
||+++|++|||||||++++.++.++. .+.||+|.++..++ ..++++|||||||++|+. .+..|+++++++|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~I-- 77 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALV-- 77 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEE--
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEE--
Confidence 69999999999999999988765432 36799999887774 458999999999999974 4689999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc--ccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT--DKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~--~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++ +.++.+..|+.++.+. .+++|++|||||+
T Consensus 78 ---------------------------------------lV~Ditd~~~~~~~~l~~~l~~~~~~--~~~ipillvgNK~ 116 (331)
T 3r7w_B 78 ---------------------------------------YVIDSQDEYINAITNLAMIIEYAYKV--NPSINIEVLIHKV 116 (331)
T ss_dssp ---------------------------------------EECCCSSCTTHHHHHHHHHHHHHHHH--CTTCEEEEECCCC
T ss_pred ---------------------------------------EEEECCchHHHHHHHHHHHHHHHhhc--CCCCcEEEEEECc
Confidence 99999997 2233333334433322 3689999999999
Q ss_pred CCCCh------------hhHHHHHHH----hCCcEEEEeccchHHHHHHhhhhcCC
Q psy2970 174 DLPNA------------LDEKELIDR----IMIDFWITLTLLIRWCESFLHHFGSH 213 (329)
Q Consensus 174 Dl~~~------------~e~~~l~~~----~~~~~~etSAk~~~~~~~~l~~i~~~ 213 (329)
|+.++ .++++++++ ++++|+||||++.++.++|...+...
T Consensus 117 DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd~nV~eAFs~iv~~l 172 (331)
T 3r7w_B 117 DGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFDHSIYEAFSRIVQKL 172 (331)
T ss_dssp CSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSSSHHHHHHHHHHTTS
T ss_pred ccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCCCcHHHHHHHHHHHH
Confidence 99763 224556664 67899999999988888877666543
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-22 Score=190.91 Aligned_cols=153 Identities=22% Similarity=0.217 Sum_probs=124.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCC--C-CCCCCceeeeEEEee-CceEEEEEEecCCCccc-----cchHHHHhhcc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQF--S-QDMIPTVGFNMRKIT-KGNVTIKVWDIGGQPRF-----RSMWERYCRGV 89 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~--~-~~~~pTig~~~~~i~-~~~~~l~I~DtpG~e~~-----~~~~~~~~~~a 89 (329)
..+||+++|++|||||||+++++++.. . ..+.+|++..+..+. .+.+.+.+|||||++++ ..++..+++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 468999999999999999999998743 2 367889998887765 35899999999999998 78889999999
Q ss_pred ceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC-CcCCCCcEEE
Q psy2970 90 NAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK-PQLIGIPILV 168 (329)
Q Consensus 90 d~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~-~~~~~iPIiL 168 (329)
|+++ +|||++++++|+++..|...+.+. ...+++|+++
T Consensus 82 d~vi-----------------------------------------~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piil 120 (307)
T 3r7w_A 82 QVLI-----------------------------------------HVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFV 120 (307)
T ss_dssp SEEE-----------------------------------------EEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred CEEE-----------------------------------------EEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 9999 999999999999887664433221 1135799999
Q ss_pred EEEcCCCCCh-----------hhHHHHHHHhC---CcEEEEeccchHHHHHHhhhhcC
Q psy2970 169 LGNKRDLPNA-----------LDEKELIDRIM---IDFWITLTLLIRWCESFLHHFGS 212 (329)
Q Consensus 169 VgNK~Dl~~~-----------~e~~~l~~~~~---~~~~etSAk~~~~~~~~l~~i~~ 212 (329)
||||+|+.++ .++++++++++ +++++|||++.++.+.|...+..
T Consensus 121 v~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~~~i~e~~~~iv~~ 178 (307)
T 3r7w_A 121 LLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVCS 178 (307)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecCChHHHHHHHHHHH
Confidence 9999999872 34667888887 78999999997777777666553
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.1e-23 Score=190.15 Aligned_cols=150 Identities=18% Similarity=0.252 Sum_probs=127.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
++.+||+++|++|||||||++++.++.+...+.+|++..+.. +++..+.+.+|||||++++...+..+++.+|+++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i- 231 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL- 231 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE-
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE-
Confidence 567999999999999999999999999888888998876653 4566788889999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHH-HHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASR-NELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~-~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++.+|+.+. .|+..+... ..++|+++|+||+
T Consensus 232 ----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~ 269 (332)
T 2wkq_A 232 ----------------------------------------ICFSLVSPASFHHVRAKWYPEVRHH--CPNTPIILVGTKL 269 (332)
T ss_dssp ----------------------------------------EEEETTCHHHHHHHHHTHHHHHHHH--CTTSCEEEEEECH
T ss_pred ----------------------------------------EEEeCCCHHHHHHHHHHHHHHHHhh--CCCCcEEEEEEch
Confidence 999999999999987 566666543 2389999999999
Q ss_pred CCCCh-----------------hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhh
Q psy2970 174 DLPNA-----------------LDEKELIDRIMI-DFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 174 Dl~~~-----------------~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i 210 (329)
|+.+. .++.++++.+++ +++++||+++.+.+++++.+
T Consensus 270 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 324 (332)
T 2wkq_A 270 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 324 (332)
T ss_dssp HHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHH
T ss_pred hcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHH
Confidence 98542 356778888997 99999999987777777654
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-22 Score=170.69 Aligned_cols=144 Identities=20% Similarity=0.214 Sum_probs=108.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceee--eEEEeeCceEEEEEEecCCCcccc------chHHHHhh--c
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGF--NMRKITKGNVTIKVWDIGGQPRFR------SMWERYCR--G 88 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~--~~~~i~~~~~~l~I~DtpG~e~~~------~~~~~~~~--~ 88 (329)
++++|+++|++|||||||++++.+..+.....|+++. ....+..++..+.+|||||++++. .+...+++ +
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 81 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence 3689999999999999999999998765444554443 233455556889999999999875 33455665 7
Q ss_pred cceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEE
Q psy2970 89 VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILV 168 (329)
Q Consensus 89 ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiL 168 (329)
+++++ +|+|+++.+ ....|+.++.+ .++|+++
T Consensus 82 ~~~~i-----------------------------------------~v~D~~~~~---~~~~~~~~~~~----~~~p~il 113 (165)
T 2wji_A 82 PDLVV-----------------------------------------NIVDATALE---RNLYLTLQLME----MGANLLL 113 (165)
T ss_dssp CSEEE-----------------------------------------EEEETTCHH---HHHHHHHHHHH----TTCCEEE
T ss_pred CCEEE-----------------------------------------EEecCCchh---HhHHHHHHHHh----cCCCEEE
Confidence 88888 999998754 34456666644 3689999
Q ss_pred EEEcCCCCCh----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 169 LGNKRDLPNA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 169 VgNK~Dl~~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|+||+|+... .++++++++++++++++||+++.+.+++++.+
T Consensus 114 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l 159 (165)
T 2wji_A 114 ALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAI 159 (165)
T ss_dssp EEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHH
T ss_pred EEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHHHHHHHH
Confidence 9999998643 35788999999999999999987778777655
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.2e-22 Score=173.17 Aligned_cols=152 Identities=21% Similarity=0.349 Sum_probs=125.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
...+||+++|++|||||||++++.+..+...+.||++.++. .+++..+.+.+|||+|+++++.++..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 34689999999999999999999999988777888775543 24566788999999999999988888999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|+|+++..+++++..|+.++... ...+.|+++|+||+
T Consensus 83 -----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~ 120 (199)
T 2f9l_A 83 -----------------------------------------LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKS 120 (199)
T ss_dssp -----------------------------------------EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECT
T ss_pred -----------------------------------------EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECc
Confidence 999999999999888888776543 23578999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+.+. .++.+++++.++.++++||++....+++++.+.
T Consensus 121 Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~ 163 (199)
T 2f9l_A 121 DLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL 163 (199)
T ss_dssp TCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred ccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99753 457889999999999999999777777776554
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-22 Score=173.02 Aligned_cols=148 Identities=16% Similarity=0.133 Sum_probs=114.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCC-----------CccccchHHHHhhc-
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGG-----------QPRFRSMWERYCRG- 88 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG-----------~e~~~~~~~~~~~~- 88 (329)
+||+++|++|||||||++++.++.+...+.|+++.....+... .+.+||||| ++.++..+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 6899999999999999999999998877777766554444333 688999999 66777778888887
Q ss_pred cceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHH-HHHHHH--------HHhCC
Q psy2970 89 VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEAS-RNELHA--------LIEKP 159 (329)
Q Consensus 89 ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~-~~~l~~--------i~~~~ 159 (329)
+++++ +++|+.|.++++++ ..|... +....
T Consensus 80 ~~~~~-----------------------------------------~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~ 118 (190)
T 2cxx_A 80 AKNID-----------------------------------------VAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFL 118 (190)
T ss_dssp GGGCC-----------------------------------------EEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred hccCC-----------------------------------------EEEEEEcchhhhhHHHhhhccCccHHHHHHHHHH
Confidence 88888 78888888888776 334321 22222
Q ss_pred cCCCCcEEEEEEcCCCCCh--hhHHHHHHHhCCc-------EEEEeccchHHHHHHhhhhc
Q psy2970 160 QLIGIPILVLGNKRDLPNA--LDEKELIDRIMID-------FWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 160 ~~~~iPIiLVgNK~Dl~~~--~e~~~l~~~~~~~-------~~etSAk~~~~~~~~l~~i~ 211 (329)
...++|+++|+||+|+.+. .+.++++++++.+ ++++||+++.+.+++++.+.
T Consensus 119 ~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 179 (190)
T 2cxx_A 119 RELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIF 179 (190)
T ss_dssp HHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHH
T ss_pred HhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHH
Confidence 2357999999999999875 4688899999875 69999999877777776553
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=7.7e-22 Score=167.06 Aligned_cols=149 Identities=18% Similarity=0.183 Sum_probs=111.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeE--EEeeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNM--RKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~--~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
.++.++|+++|++|||||||++++.++.+...+.++++.++ ..+..++..+.+|||||++++..++..++..+|+++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i- 83 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVI- 83 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEE-
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEE-
Confidence 46789999999999999999999999988766666655433 335556678899999999999998888889999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|+|++++... .....+..+. ..++|+++|+||+|
T Consensus 84 ----------------------------------------~v~d~~~~~~~-~~~~~l~~~~----~~~~p~ilv~nK~D 118 (178)
T 2lkc_A 84 ----------------------------------------LVVAADDGVMP-QTVEAINHAK----AANVPIIVAINKMD 118 (178)
T ss_dssp ----------------------------------------EEEETTCCCCH-HHHHHHHHHG----GGSCCEEEEEETTT
T ss_pred ----------------------------------------EEEECCCCCcH-HHHHHHHHHH----hCCCCEEEEEECcc
Confidence 99999885332 2223333332 24789999999999
Q ss_pred CCCh--hhHHHHHHHhC---------CcEEEEeccchHHHHHHhhhhc
Q psy2970 175 LPNA--LDEKELIDRIM---------IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 175 l~~~--~e~~~l~~~~~---------~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.+. .+..+..++.+ ++++++||+++.+.+++++.+.
T Consensus 119 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 166 (178)
T 2lkc_A 119 KPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMIL 166 (178)
T ss_dssp SSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHH
Confidence 9864 22222222222 4899999999888888776653
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-22 Score=186.76 Aligned_cols=153 Identities=12% Similarity=0.101 Sum_probs=115.8
Q ss_pred CCCceEEEEEcCC---------CCCHHHHHHHHHc---CCCCCCCCCce-eeeEEE------------------eeCceE
Q psy2970 17 WKEEMELTLVGLQ---------CSGKTTFVNVIAS---GQFSQDMIPTV-GFNMRK------------------ITKGNV 65 (329)
Q Consensus 17 ~~k~lkIlllG~~---------gvGKSSLin~l~~---~~~~~~~~pTi-g~~~~~------------------i~~~~~ 65 (329)
..+.+||+++|++ |||||||+++|.+ +.+...+.||+ +.++.. +++..+
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 3467999999999 9999999999999 56666777776 444321 345678
Q ss_pred EEEEEe-----------------------cCCCccccchHHHHhh---------------------ccceeEeecceeee
Q psy2970 66 TIKVWD-----------------------IGGQPRFRSMWERYCR---------------------GVNAIVWTGGLYIV 101 (329)
Q Consensus 66 ~l~I~D-----------------------tpG~e~~~~~~~~~~~---------------------~ad~iI~~~~~~~~ 101 (329)
.++||| ++|+++++.++..+++ ++|+++
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi-------- 167 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFL-------- 167 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEE--------
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEE--------
Confidence 899999 7777777777777776 677777
Q ss_pred hhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc--ccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh-
Q psy2970 102 SKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT--DKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA- 178 (329)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~--~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~- 178 (329)
+|||++++ ++|+.+..|+.++.+.....++|++||+||+|+.+.
T Consensus 168 ---------------------------------lV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~ 214 (255)
T 3c5h_A 168 ---------------------------------LGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER 214 (255)
T ss_dssp ---------------------------------EEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHH
T ss_pred ---------------------------------EEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccH
Confidence 99999998 999999999988876423357999999999999765
Q ss_pred --hhHHHHHHH-hCCcEEEEeccchHHHHHHhhhh
Q psy2970 179 --LDEKELIDR-IMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 179 --~e~~~l~~~-~~~~~~etSAk~~~~~~~~l~~i 210 (329)
.++++++++ .+++++++||+++.+.+++++.+
T Consensus 215 ~v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l 249 (255)
T 3c5h_A 215 YIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTL 249 (255)
T ss_dssp HHHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHH
Confidence 345667766 47899999999977777777654
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-21 Score=169.91 Aligned_cols=151 Identities=21% Similarity=0.349 Sum_probs=127.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
...++|+++|++|||||||++++.+..+...+.||++.++.. +++..+.+.+||++|++++...+..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 345899999999999999999999999887888998876542 4566778889999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|+|+++..+++++..|+.++.+. ...+.|+++++||+
T Consensus 107 -----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~ 144 (191)
T 1oix_A 107 -----------------------------------------LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKS 144 (191)
T ss_dssp -----------------------------------------EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECG
T ss_pred -----------------------------------------EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECc
Confidence 999999999998888888766542 23578999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|+.+. .++.+++++.++.++++||++....+++++.+
T Consensus 145 Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l 186 (191)
T 1oix_A 145 DLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186 (191)
T ss_dssp GGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99653 46788999999999999999977777777654
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-21 Score=168.29 Aligned_cols=144 Identities=22% Similarity=0.228 Sum_probs=112.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceee--eEEEeeCceEEEEEEecCCCcccc------chHHHHhh--c
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGF--NMRKITKGNVTIKVWDIGGQPRFR------SMWERYCR--G 88 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~--~~~~i~~~~~~l~I~DtpG~e~~~------~~~~~~~~--~ 88 (329)
+.++|+++|++|||||||++++.+..+.....|+++. ....+..++..+.+|||||++.+. .++..+++ .
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 85 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 85 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccC
Confidence 5689999999999999999999987765444455443 334466667899999999999875 34566665 3
Q ss_pred cceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEE
Q psy2970 89 VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILV 168 (329)
Q Consensus 89 ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiL 168 (329)
+++++ +|+|.++ ++....|+.++.+ .++|+++
T Consensus 86 ~~~~i-----------------------------------------~v~d~~~---~~~~~~~~~~~~~----~~~piil 117 (188)
T 2wjg_A 86 PDLVV-----------------------------------------NIVDATA---LERNLYLTLQLME----MGANLLL 117 (188)
T ss_dssp CSEEE-----------------------------------------EEEEGGG---HHHHHHHHHHHHT----TTCCEEE
T ss_pred CCEEE-----------------------------------------EEecchh---HHHHHHHHHHHHh----cCCCEEE
Confidence 78777 9999875 5666677777654 4789999
Q ss_pred EEEcCCCCCh----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 169 LGNKRDLPNA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 169 VgNK~Dl~~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|+||+|+... .+.++++++++++++++||+++.+.+++++.+
T Consensus 118 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 163 (188)
T 2wjg_A 118 ALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAI 163 (188)
T ss_dssp EEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHH
T ss_pred EEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCHHHHHHHH
Confidence 9999998654 46888999999999999999976667766554
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.1e-22 Score=175.74 Aligned_cols=139 Identities=21% Similarity=0.302 Sum_probs=109.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCC---CCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhc----c
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQ---DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRG----V 89 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~---~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~----a 89 (329)
..+.++|+++|++|||||||++++.++.+.. .+.||++..+ ....+.+|||||++.++..+..+++. +
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 83 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 83 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-----GGSSCEEEECCCCGGGTHHHHHHHHHHGGGE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-----eCceEEEEECCCcHHHHHHHHHHHHhccccC
Confidence 4567999999999999999999999988753 4566665544 56678999999999999999888887 8
Q ss_pred ceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECC-CcccHHHHHHHHHHHHhCC---cCCCCc
Q psy2970 90 NAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAA-DTDKLEASRNELHALIEKP---QLIGIP 165 (329)
Q Consensus 90 d~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt-~~~S~~~~~~~l~~i~~~~---~~~~iP 165 (329)
++++ +|+|++ ++++|+....|+.+++... ...++|
T Consensus 84 ~~~i-----------------------------------------~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 122 (218)
T 1nrj_B 84 KGLI-----------------------------------------FMVDSTVDPKKLTTTAEFLVDILSITESSCENGID 122 (218)
T ss_dssp EEEE-----------------------------------------EEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred CEEE-----------------------------------------EEEECCCChHHHHHHHHHHHHHHhcccccccCCCC
Confidence 9998 999999 8899999999998887642 236899
Q ss_pred EEEEEEcCCCCCh-----------hhHHHHHHHhCCcEEEEeccchH
Q psy2970 166 ILVLGNKRDLPNA-----------LDEKELIDRIMIDFWITLTLLIR 201 (329)
Q Consensus 166 IiLVgNK~Dl~~~-----------~e~~~l~~~~~~~~~etSAk~~~ 201 (329)
+++|+||+|+.++ .++++++...+.+++++||+++.
T Consensus 123 ~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~ 169 (218)
T 1nrj_B 123 ILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINE 169 (218)
T ss_dssp EEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred EEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 9999999999764 23566777778899999999854
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-21 Score=161.48 Aligned_cols=143 Identities=18% Similarity=0.229 Sum_probs=102.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCce--eeeEEEeeCceEEEEEEecCCCcc-------ccchHHHHhhccc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTV--GFNMRKITKGNVTIKVWDIGGQPR-------FRSMWERYCRGVN 90 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTi--g~~~~~i~~~~~~l~I~DtpG~e~-------~~~~~~~~~~~ad 90 (329)
.||+++|++|||||||++++.++.+. ....+++ ......+..++..+.+|||||++. +...+..+++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 58999999999999999999988753 1222222 233334555667899999999987 3445667888999
Q ss_pred eeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEE
Q psy2970 91 AIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLG 170 (329)
Q Consensus 91 ~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVg 170 (329)
+++ +|+|++++.+.. ..++.+.+.. .++|+++|+
T Consensus 82 ~~i-----------------------------------------~v~d~~~~~~~~--~~~~~~~~~~---~~~p~ilv~ 115 (161)
T 2dyk_A 82 VVL-----------------------------------------FAVDGRAELTQA--DYEVAEYLRR---KGKPVILVA 115 (161)
T ss_dssp EEE-----------------------------------------EEEESSSCCCHH--HHHHHHHHHH---HTCCEEEEE
T ss_pred EEE-----------------------------------------EEEECCCcccHh--HHHHHHHHHh---cCCCEEEEE
Confidence 999 999999864432 2333333332 468999999
Q ss_pred EcCCCCCh-hhHHHHHHHhCC-cEEEEeccchHHHHHHhhhh
Q psy2970 171 NKRDLPNA-LDEKELIDRIMI-DFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 171 NK~Dl~~~-~e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i 210 (329)
||+|+.+. .+.++++ +++. +++++||+++.+.+++++.+
T Consensus 116 nK~Dl~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l 156 (161)
T 2dyk_A 116 TKVDDPKHELYLGPLY-GLGFGDPIPTSSEHARGLEELLEAI 156 (161)
T ss_dssp ECCCSGGGGGGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHH
T ss_pred ECcccccchHhHHHHH-hCCCCCeEEEecccCCChHHHHHHH
Confidence 99999765 3455566 6787 89999999987777777654
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-20 Score=168.45 Aligned_cols=151 Identities=17% Similarity=0.138 Sum_probs=108.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCC--CceeeeEEEeeCceEEEEEEecCCCc------cc---cchHHHHh
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMI--PTVGFNMRKITKGNVTIKVWDIGGQP------RF---RSMWERYC 86 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~--pTig~~~~~i~~~~~~l~I~DtpG~e------~~---~~~~~~~~ 86 (329)
.+.+||+++|++|||||||++++.++.+..... .|....+..++.+...+.+|||||+. +. ...+..++
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 106 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALA 106 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhh
Confidence 467999999999999999999999988752222 23344444555567899999999983 31 11123456
Q ss_pred hccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHH--HHHHHHHHHHhCCcCCCC
Q psy2970 87 RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLE--ASRNELHALIEKPQLIGI 164 (329)
Q Consensus 87 ~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~--~~~~~l~~i~~~~~~~~i 164 (329)
..+|+++ +|||++++.+|+ ....|+..+... ..++
T Consensus 107 ~~~d~~i-----------------------------------------~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~ 143 (228)
T 2qu8_A 107 HINGVIL-----------------------------------------FIIDISEQCGLTIKEQINLFYSIKSV--FSNK 143 (228)
T ss_dssp TSSEEEE-----------------------------------------EEEETTCTTSSCHHHHHHHHHHHHTC--C-CC
T ss_pred ccccEEE-----------------------------------------EEEecccccCcchHHHHHHHHHHHHh--hcCC
Confidence 7778888 999999988764 344566666443 3479
Q ss_pred cEEEEEEcCCCCChh--------hHHHHHHHhC--CcEEEEeccchHHHHHHhhhhc
Q psy2970 165 PILVLGNKRDLPNAL--------DEKELIDRIM--IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 165 PIiLVgNK~Dl~~~~--------e~~~l~~~~~--~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+++|+||+|+.+.. ..+++++..+ ++++++||+++.+.+++++.+.
T Consensus 144 piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~ 200 (228)
T 2qu8_A 144 SIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITAC 200 (228)
T ss_dssp CEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred cEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHH
Confidence 999999999997541 3556777777 8999999999777777776553
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-21 Score=166.01 Aligned_cols=149 Identities=16% Similarity=0.214 Sum_probs=104.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCce-eeeEEEeeCceEEEEEEecCCCccccchH--------HHHh
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTV-GFNMRKITKGNVTIKVWDIGGQPRFRSMW--------ERYC 86 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~--~~~~pTi-g~~~~~i~~~~~~l~I~DtpG~e~~~~~~--------~~~~ 86 (329)
++..||+++|++|||||||++++.+..+. ..+.+|+ +.....+..++..+.+|||||++++.... ..++
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 35689999999999999999999987642 2222222 22223344455678999999997643211 2357
Q ss_pred hccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcE
Q psy2970 87 RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPI 166 (329)
Q Consensus 87 ~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPI 166 (329)
+++|+++ +|+|++++.+++ ...|+..+.+.. ..++|+
T Consensus 82 ~~ad~~i-----------------------------------------~v~D~~~~~s~~-~~~~~~~~~~~~-~~~~p~ 118 (172)
T 2gj8_A 82 EQADRVL-----------------------------------------FMVDGTTTDAVD-PAEIWPEFIARL-PAKLPI 118 (172)
T ss_dssp HTCSEEE-----------------------------------------EEEETTTCCCCS-HHHHCHHHHHHS-CTTCCE
T ss_pred HhCCEEE-----------------------------------------EEEECCCCCCHH-HHHHHHHHHHhc-ccCCCE
Confidence 8899999 999999988876 346666665432 357999
Q ss_pred EEEEEcCCCCChhhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 167 LVLGNKRDLPNALDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 167 iLVgNK~Dl~~~~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
++|+||+|+.++. .++++..+.+++++||+++.+.+++++.+.
T Consensus 119 ilv~NK~Dl~~~~--~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~ 161 (172)
T 2gj8_A 119 TVVRNKADITGET--LGMSEVNGHALIRLSARTGEGVDVLRNHLK 161 (172)
T ss_dssp EEEEECHHHHCCC--CEEEEETTEEEEECCTTTCTTHHHHHHHHH
T ss_pred EEEEECccCCcch--hhhhhccCCceEEEeCCCCCCHHHHHHHHH
Confidence 9999999985431 112223467899999999877787776654
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.2e-21 Score=192.13 Aligned_cols=147 Identities=18% Similarity=0.215 Sum_probs=105.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEe------------eCceEEEEEEecCCCccccchHHHH
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI------------TKGNVTIKVWDIGGQPRFRSMWERY 85 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i------------~~~~~~l~I~DtpG~e~~~~~~~~~ 85 (329)
.+++||+++|.+|||||||++++.++.+...+.||+|..+... +++.+.+.+|||||++.++.....+
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~ 118 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFF 118 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHH
Confidence 3569999999999999999999999999888889999887632 2346899999999999999999999
Q ss_pred hhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCc
Q psy2970 86 CRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIP 165 (329)
Q Consensus 86 ~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iP 165 (329)
++++|+++ +|+|+++.+. ...|+.++... ..++|
T Consensus 119 l~~~d~ii-----------------------------------------~V~D~s~~~~---~~~~~~~l~~~--~~~~p 152 (535)
T 3dpu_A 119 MTRSSVYM-----------------------------------------LLLDSRTDSN---KHYWLRHIEKY--GGKSP 152 (535)
T ss_dssp HHSSEEEE-----------------------------------------EEECGGGGGG---HHHHHHHHHHH--SSSCC
T ss_pred ccCCcEEE-----------------------------------------EEEeCCCchh---HHHHHHHHHHh--CCCCC
Confidence 99999999 9999987644 44555555443 24689
Q ss_pred EEEEEEcCCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 166 ILVLGNKRDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 166 IiLVgNK~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
++||+||+|+.+. .+.++++..++.+++++||+++.+++++++.+
T Consensus 153 vilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l 202 (535)
T 3dpu_A 153 VIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSL 202 (535)
T ss_dssp EEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHH
T ss_pred EEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHH
Confidence 9999999999754 34666777788999999999966666665544
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-20 Score=174.94 Aligned_cols=145 Identities=17% Similarity=0.188 Sum_probs=112.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceee--eEEEeeCceEEEEEEecCCCccccch------HHHHh--h
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGF--NMRKITKGNVTIKVWDIGGQPRFRSM------WERYC--R 87 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~--~~~~i~~~~~~l~I~DtpG~e~~~~~------~~~~~--~ 87 (329)
.+.++|+++|++|||||||+|+|++..+.....|+++. ....+..++..+.+|||||++.+... ...++ .
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 45789999999999999999999998765444444443 33346666789999999999887652 34555 4
Q ss_pred ccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEE
Q psy2970 88 GVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPIL 167 (329)
Q Consensus 88 ~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIi 167 (329)
.+|+++ +|+|+++.++. ..++.++.+ .++|++
T Consensus 83 ~~d~ii-----------------------------------------~V~D~t~~~~~---~~~~~~l~~----~~~pvi 114 (258)
T 3a1s_A 83 DADLVI-----------------------------------------LVADSVNPEQS---LYLLLEILE----MEKKVI 114 (258)
T ss_dssp CCSEEE-----------------------------------------EEEETTSCHHH---HHHHHHHHT----TTCCEE
T ss_pred CCCEEE-----------------------------------------EEeCCCchhhH---HHHHHHHHh----cCCCEE
Confidence 788888 99999986543 345555544 379999
Q ss_pred EEEEcCCCCCh----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 168 VLGNKRDLPNA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 168 LVgNK~Dl~~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+|+||+|+.+. .+.+++++.++++++++||+++.+.+++++.+
T Consensus 115 lv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i 161 (258)
T 3a1s_A 115 LAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKEKI 161 (258)
T ss_dssp EEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHH
Confidence 99999998653 45789999999999999999977777777655
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-20 Score=174.95 Aligned_cols=146 Identities=18% Similarity=0.221 Sum_probs=113.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcee--eeEEEeeCceEEEEEEecCCCccccc----------hHHHHh
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIKVWDIGGQPRFRS----------MWERYC 86 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig--~~~~~i~~~~~~l~I~DtpG~e~~~~----------~~~~~~ 86 (329)
++++|+++|.+|||||||+|++++..+.....|+++ .....+...+..+.+|||||++.+.. ....++
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 468999999999999999999999876544444443 33445666677889999999988763 223333
Q ss_pred --hccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCC
Q psy2970 87 --RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGI 164 (329)
Q Consensus 87 --~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~i 164 (329)
+.+|+++ +|+|+++.++...+..++.+. ++
T Consensus 82 ~~~~~d~ii-----------------------------------------~VvD~~~~~~~~~~~~~l~~~-------~~ 113 (274)
T 3i8s_A 82 LSGDADLLI-----------------------------------------NVVDASNLERNLYLTLQLLEL-------GI 113 (274)
T ss_dssp HHTCCSEEE-----------------------------------------EEEEGGGHHHHHHHHHHHHHH-------TC
T ss_pred hhcCCCEEE-----------------------------------------EEecCCChHHHHHHHHHHHhc-------CC
Confidence 6788888 999999866555555444433 68
Q ss_pred cEEEEEEcCCCCCh----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhcC
Q psy2970 165 PILVLGNKRDLPNA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFGS 212 (329)
Q Consensus 165 PIiLVgNK~Dl~~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~~ 212 (329)
|+++|+||+|+.+. .+.+++++.++++++++||+++.+.+++++.+..
T Consensus 114 p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~ 165 (274)
T 3i8s_A 114 PCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDR 165 (274)
T ss_dssp CEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHT
T ss_pred CEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 99999999998654 3578899999999999999999889998877754
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-20 Score=160.28 Aligned_cols=145 Identities=19% Similarity=0.201 Sum_probs=100.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceee----eEEEeeCceEEEEEEecCC----------CccccchH
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGF----NMRKITKGNVTIKVWDIGG----------QPRFRSMW 82 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~----~~~~i~~~~~~l~I~DtpG----------~e~~~~~~ 82 (329)
..+.++|+++|++|||||||++++.++.+...+.++.+. ....++. .+.+||||| ++.+..++
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence 346799999999999999999999998765444444442 2222322 589999999 67777778
Q ss_pred HHHhhcc---ceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC
Q psy2970 83 ERYCRGV---NAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP 159 (329)
Q Consensus 83 ~~~~~~a---d~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~ 159 (329)
..+++.+ |+++ +|+|++++.++.... .+..+ ..
T Consensus 97 ~~~~~~~~~~~~~i-----------------------------------------~v~d~~~~~~~~~~~-~~~~~-~~- 132 (195)
T 1svi_A 97 ETYITTREELKAVV-----------------------------------------QIVDLRHAPSNDDVQ-MYEFL-KY- 132 (195)
T ss_dssp HHHHHHCTTEEEEE-----------------------------------------EEEETTSCCCHHHHH-HHHHH-HH-
T ss_pred HHHHhhhhcCCEEE-----------------------------------------EEEECCCCCCHHHHH-HHHHH-HH-
Confidence 8888877 7888 999999987776542 12222 21
Q ss_pred cCCCCcEEEEEEcCCCCChhhH----HHHHHHh----CCcEEEEeccchHHHHHHhhhh
Q psy2970 160 QLIGIPILVLGNKRDLPNALDE----KELIDRI----MIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 160 ~~~~iPIiLVgNK~Dl~~~~e~----~~l~~~~----~~~~~etSAk~~~~~~~~l~~i 210 (329)
.++|+++|+||+|+.+..+. +++.+.+ +.+++++||+++.+.+++++.+
T Consensus 133 --~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 189 (195)
T 1svi_A 133 --YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAI 189 (195)
T ss_dssp --TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHH
T ss_pred --cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHH
Confidence 57899999999999876432 3444434 4689999999977777777654
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=5.8e-20 Score=178.55 Aligned_cols=121 Identities=21% Similarity=0.305 Sum_probs=102.0
Q ss_pred CCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhh
Q psy2970 50 IPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLL 129 (329)
Q Consensus 50 ~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (329)
.||+|.....++.+++.+++|||+||+.++.+|..++++++++|
T Consensus 178 ~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iI------------------------------------ 221 (353)
T 1cip_A 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAII------------------------------------ 221 (353)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEE------------------------------------
T ss_pred CceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEE------------------------------------
Confidence 35667776677777899999999999999999999999999999
Q ss_pred cceeEEEEECCC----------cccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC--------------------hh
Q psy2970 130 FQLIKYMVDAAD----------TDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN--------------------AL 179 (329)
Q Consensus 130 ~~~~~lV~Dvt~----------~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~--------------------~~ 179 (329)
+|||+++ .++|+++..|+.++.+.....++|++|||||+|+.. ..
T Consensus 222 -----fV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~ 296 (353)
T 1cip_A 222 -----FCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYE 296 (353)
T ss_dssp -----EEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHH
T ss_pred -----EEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHH
Confidence 9999999 678999999999999877778999999999999842 24
Q ss_pred hHHHHHH-----------HhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 180 DEKELID-----------RIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 180 e~~~l~~-----------~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
++.++++ ..++.+++|||+++.+.+..+..+.
T Consensus 297 e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~ 339 (353)
T 1cip_A 297 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVT 339 (353)
T ss_dssp HHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHH
Confidence 5666665 3467899999999877777776553
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.4e-20 Score=177.38 Aligned_cols=122 Identities=20% Similarity=0.321 Sum_probs=101.2
Q ss_pred CCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhh
Q psy2970 49 MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSL 128 (329)
Q Consensus 49 ~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (329)
..||+|.....++.+++++++|||+||++++.+|.+|+++++++|
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iI----------------------------------- 195 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIM----------------------------------- 195 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEE-----------------------------------
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEE-----------------------------------
Confidence 356788877778888999999999999999999999999999999
Q ss_pred hcceeEEEEEC----------CCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh--------------------
Q psy2970 129 LFQLIKYMVDA----------ADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-------------------- 178 (329)
Q Consensus 129 ~~~~~~lV~Dv----------t~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~-------------------- 178 (329)
+|||+ ++.++|+++..|+.++.+.....++|++|+|||+|+.++
T Consensus 196 ------fV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~ 269 (327)
T 3ohm_A 196 ------FLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRD 269 (327)
T ss_dssp ------EEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSC
T ss_pred ------EEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCC
Confidence 99955 477899999999999998877889999999999998532
Q ss_pred -hhHHHHH----------HHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 179 -LDEKELI----------DRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 179 -~e~~~l~----------~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+++.++. ++.++.+++|||++..+.+..+..+.
T Consensus 270 ~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~ 313 (327)
T 3ohm_A 270 AQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVK 313 (327)
T ss_dssp HHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHH
Confidence 3445552 23457789999999777777776553
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-20 Score=162.20 Aligned_cols=123 Identities=22% Similarity=0.337 Sum_probs=94.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCC---CCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhc----c
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQ---DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRG----V 89 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~---~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~----a 89 (329)
..+.++|+++|++|||||||++++.++.+.. .+.|+++..+ ....+.+|||||++.+...+..+++. +
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 119 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 119 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC-----CCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee-----cCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence 4577999999999999999999999987643 3344444333 55678899999999998888888876 8
Q ss_pred ceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECC-CcccHHHHHHHHHHHHhCC---cCCCCc
Q psy2970 90 NAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAA-DTDKLEASRNELHALIEKP---QLIGIP 165 (329)
Q Consensus 90 d~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt-~~~S~~~~~~~l~~i~~~~---~~~~iP 165 (329)
|+++ +|||++ ++++++....|+.+++... ...++|
T Consensus 120 ~~~i-----------------------------------------~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 158 (193)
T 2ged_A 120 KGLI-----------------------------------------FMVDSTVDPKKLTTTAEFLVDILSITESSCENGID 158 (193)
T ss_dssp EEEE-----------------------------------------EEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred CEEE-----------------------------------------EEEECCCCchhHHHHHHHHHHHHhhhhhccccCCC
Confidence 9999 999999 8999999999988887542 125799
Q ss_pred EEEEEEcCCCCChhhHHHHH
Q psy2970 166 ILVLGNKRDLPNALDEKELI 185 (329)
Q Consensus 166 IiLVgNK~Dl~~~~e~~~l~ 185 (329)
+++|+||+|+.++.+.+++.
T Consensus 159 ~ilv~nK~Dl~~~~~~~~~~ 178 (193)
T 2ged_A 159 ILIACNKSELFTARPPSKIK 178 (193)
T ss_dssp EEEEEECTTSTTCCCHHHHH
T ss_pred EEEEEEchHhcCCCCHHHHH
Confidence 99999999998765444433
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-20 Score=174.04 Aligned_cols=144 Identities=17% Similarity=0.196 Sum_probs=111.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceee--eEEEeeCceEEEEEEecCCCccccc----------hHHHHh--
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGF--NMRKITKGNVTIKVWDIGGQPRFRS----------MWERYC-- 86 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~--~~~~i~~~~~~l~I~DtpG~e~~~~----------~~~~~~-- 86 (329)
.+|+++|.+|||||||+|++++..+.....|+++. ....+..++..+.+|||||+..+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 38999999999999999999998765444455443 3444665667999999999988764 455666
Q ss_pred hccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcE
Q psy2970 87 RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPI 166 (329)
Q Consensus 87 ~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPI 166 (329)
+++|+++ +|+|+++.+++..+..+ +.+ .++|+
T Consensus 82 ~~~d~vi-----------------------------------------~VvDas~~~~~~~l~~~---l~~----~~~pv 113 (256)
T 3iby_A 82 LEYDCII-----------------------------------------NVIDACHLERHLYLTSQ---LFE----LGKPV 113 (256)
T ss_dssp SCCSEEE-----------------------------------------EEEEGGGHHHHHHHHHH---HTT----SCSCE
T ss_pred CCCCEEE-----------------------------------------EEeeCCCchhHHHHHHH---HHH----cCCCE
Confidence 7889999 99999986655544443 322 37899
Q ss_pred EEEEEcCCCCCh----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhcC
Q psy2970 167 LVLGNKRDLPNA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFGS 212 (329)
Q Consensus 167 iLVgNK~Dl~~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~~ 212 (329)
++|+||+|+.+. .+.+.+++.++++++++||+++.+.+++++.+..
T Consensus 114 ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~ 163 (256)
T 3iby_A 114 VVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLH 163 (256)
T ss_dssp EEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHT
T ss_pred EEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 999999998654 4577899999999999999998888888877653
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-20 Score=173.92 Aligned_cols=144 Identities=22% Similarity=0.271 Sum_probs=109.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceee--eEEEeeCceEEEEEEecCCCcccc------chHHHHhh--c
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGF--NMRKITKGNVTIKVWDIGGQPRFR------SMWERYCR--G 88 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~--~~~~i~~~~~~l~I~DtpG~e~~~------~~~~~~~~--~ 88 (329)
..++|+++|++|||||||+|++++........|++.. ....++. +..+.+|||||++.+. .+...++. +
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 80 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR 80 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence 3589999999999999999999987644333343333 3333455 6789999999999886 35566665 5
Q ss_pred cceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEE
Q psy2970 89 VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILV 168 (329)
Q Consensus 89 ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiL 168 (329)
+|+++ +|+|+++.++. ..|..++.+ .++|+++
T Consensus 81 ~d~vi-----------------------------------------~V~D~t~~e~~---~~~~~~l~~----~~~p~il 112 (272)
T 3b1v_A 81 ADSIL-----------------------------------------NVVDATNLERN---LYLTTQLIE----TGIPVTI 112 (272)
T ss_dssp CSEEE-----------------------------------------EEEEGGGHHHH---HHHHHHHHH----TCSCEEE
T ss_pred CCEEE-----------------------------------------EEecCCchHhH---HHHHHHHHh----cCCCEEE
Confidence 88888 99999986544 345555543 4789999
Q ss_pred EEEcCCCCCh----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 169 LGNKRDLPNA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 169 VgNK~Dl~~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+||+|+... .+.+++++.++++++++||+++.+.+++++.+.
T Consensus 113 v~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~ 159 (272)
T 3b1v_A 113 ALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVVKKAA 159 (272)
T ss_dssp EEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHH
T ss_pred EEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHH
Confidence 9999998643 467889999999999999999888888776653
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.81 E-value=7.5e-20 Score=156.62 Aligned_cols=146 Identities=14% Similarity=0.143 Sum_probs=100.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE-eeCceEEEEEEecCC----------CccccchHHHH
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK-ITKGNVTIKVWDIGG----------QPRFRSMWERY 85 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~-i~~~~~~l~I~DtpG----------~e~~~~~~~~~ 85 (329)
....+||+++|++|||||||++++.++++. .+.++.+..... ....+..+.+||||| ++.+..++..+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDY 98 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHH
Confidence 345689999999999999999999998743 233333322211 111123577999999 66677777778
Q ss_pred hhcc---ceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccH--HHHHHHHHHHHhCCc
Q psy2970 86 CRGV---NAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKL--EASRNELHALIEKPQ 160 (329)
Q Consensus 86 ~~~a---d~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~--~~~~~~l~~i~~~~~ 160 (329)
++.+ ++++ +|+|.++..+. ..+..|+.+
T Consensus 99 ~~~~~~~~~vi-----------------------------------------~v~d~~~~~~~~~~~~~~~~~~------ 131 (195)
T 3pqc_A 99 FKNRWSLQMVF-----------------------------------------LLVDGRIPPQDSDLMMVEWMKS------ 131 (195)
T ss_dssp HHHCTTEEEEE-----------------------------------------EEEETTSCCCHHHHHHHHHHHH------
T ss_pred HhcCcCceEEE-----------------------------------------EEecCCCCCCHHHHHHHHHHHH------
Confidence 8776 6666 99999876443 223333332
Q ss_pred CCCCcEEEEEEcCCCCChh-------hHHHHHHHhC-CcEEEEeccchHHHHHHhhhhc
Q psy2970 161 LIGIPILVLGNKRDLPNAL-------DEKELIDRIM-IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 161 ~~~iPIiLVgNK~Dl~~~~-------e~~~l~~~~~-~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.++|+++|+||+|+.++. +.+++++.++ ++++++||+++.+.+++++.+.
T Consensus 132 -~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 189 (195)
T 3pqc_A 132 -LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLIS 189 (195)
T ss_dssp -TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHH
T ss_pred -cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHH
Confidence 268999999999997652 2344444434 6899999999877788776553
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-19 Score=175.38 Aligned_cols=122 Identities=17% Similarity=0.190 Sum_probs=101.8
Q ss_pred CCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhh
Q psy2970 49 MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSL 128 (329)
Q Consensus 49 ~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (329)
+.||+|.....++.+++++++|||+||++++.+|..|+++++++|
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iI----------------------------------- 189 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAI----------------------------------- 189 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEE-----------------------------------
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEE-----------------------------------
Confidence 346688888888888999999999999999999999999999999
Q ss_pred hcceeEEEEECC----------CcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh--------------------
Q psy2970 129 LFQLIKYMVDAA----------DTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-------------------- 178 (329)
Q Consensus 129 ~~~~~~lV~Dvt----------~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~-------------------- 178 (329)
+|||++ +.++|+++..|+.++.+.....++|++|+|||+|+.++
T Consensus 190 ------fV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~ 263 (340)
T 4fid_A 190 ------FVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNA 263 (340)
T ss_dssp ------EEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCH
T ss_pred ------EEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCH
Confidence 999998 78899999999999998877889999999999998542
Q ss_pred hhHHH-HHHHh--------------------------CCcEEEEeccchHHHHHHhhhhc
Q psy2970 179 LDEKE-LIDRI--------------------------MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 179 ~e~~~-l~~~~--------------------------~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.++.+ +.+++ .+.+.+|||++..+.+..+..+.
T Consensus 264 e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~ 323 (340)
T 4fid_A 264 VMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAV 323 (340)
T ss_dssp HHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHH
Confidence 12322 33444 36789999999777777776554
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-19 Score=167.08 Aligned_cols=145 Identities=19% Similarity=0.125 Sum_probs=112.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--EeeCceEEEEEEecCCCccccc------hHHHHh--hc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--KITKGNVTIKVWDIGGQPRFRS------MWERYC--RG 88 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~i~~~~~~l~I~DtpG~e~~~~------~~~~~~--~~ 88 (329)
+.++|+++|++|||||||+|++++..+.....|+++.+.. .+..++..+.+|||||+..+.. ....++ .+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 3589999999999999999999998775555565554443 4566677899999999998766 556666 57
Q ss_pred cceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEE
Q psy2970 89 VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILV 168 (329)
Q Consensus 89 ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiL 168 (329)
+|+++ +|+|.++. +....++.++.+. .++|+++
T Consensus 82 ~d~vi-----------------------------------------~v~D~~~~---~~~~~~~~~~~~~---~~~p~il 114 (271)
T 3k53_A 82 ADVIV-----------------------------------------DIVDSTCL---MRNLFLTLELFEM---EVKNIIL 114 (271)
T ss_dssp CSEEE-----------------------------------------EEEEGGGH---HHHHHHHHHHHHT---TCCSEEE
T ss_pred CcEEE-----------------------------------------EEecCCcc---hhhHHHHHHHHhc---CCCCEEE
Confidence 88888 99999875 3444555555543 2389999
Q ss_pred EEEcCCCCCh----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 169 LGNKRDLPNA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 169 VgNK~Dl~~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|+||+|+.+. .+.+.+++.++++++++||+++.+.+++++.+
T Consensus 115 v~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i 160 (271)
T 3k53_A 115 VLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEELKRMI 160 (271)
T ss_dssp EEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHHHHHHH
T ss_pred EEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHHHHHHHH
Confidence 9999998653 35788999999999999999977777777655
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=165.20 Aligned_cols=148 Identities=16% Similarity=0.120 Sum_probs=113.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCceeee-EEEeeCc-eEEEEEEecCCCcccc----------chHH
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTVGFN-MRKITKG-NVTIKVWDIGGQPRFR----------SMWE 83 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~--~~~~pTig~~-~~~i~~~-~~~l~I~DtpG~e~~~----------~~~~ 83 (329)
...-.|+++|.+|||||||+|+|++.++. .....|+... ......+ +.++.+|||||+.+.. ....
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~ 87 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAK 87 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHH
Confidence 34578999999999999999999998874 2222233222 2334555 8899999999996654 4556
Q ss_pred HHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCC
Q psy2970 84 RYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIG 163 (329)
Q Consensus 84 ~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~ 163 (329)
.+++++|+++ +|+|+++..+++....|+..+.. .+
T Consensus 88 ~~l~~aD~il-----------------------------------------~VvD~~~~~~~~~~~~~~~~l~~----~~ 122 (308)
T 3iev_A 88 QSLEEADVIL-----------------------------------------FMIDATEGWRPRDEEIYQNFIKP----LN 122 (308)
T ss_dssp HHHHHCSEEE-----------------------------------------EEEETTTBSCHHHHHHHHHHTGG----GC
T ss_pred HHhhcCCEEE-----------------------------------------EEEeCCCCCCchhHHHHHHHHHh----cC
Confidence 7888999999 99999998888887776666643 47
Q ss_pred CcEEEEEEcCCCC-Ch----hhHHHHHHHhC--CcEEEEeccchHHHHHHhhhh
Q psy2970 164 IPILVLGNKRDLP-NA----LDEKELIDRIM--IDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 164 iPIiLVgNK~Dl~-~~----~e~~~l~~~~~--~~~~etSAk~~~~~~~~l~~i 210 (329)
+|+++|+||+|+. +. ...+++.+.++ .+++++||+++.+.+++++.+
T Consensus 123 ~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l 176 (308)
T 3iev_A 123 KPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTI 176 (308)
T ss_dssp CCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHH
T ss_pred CCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHH
Confidence 8999999999997 43 33566777776 789999999977777777655
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.7e-18 Score=162.75 Aligned_cols=150 Identities=19% Similarity=0.177 Sum_probs=109.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCC--CCCCceeeeEEE-eeCceEEEEEEecCCCccc--------cchHHHHhh
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQ--DMIPTVGFNMRK-ITKGNVTIKVWDIGGQPRF--------RSMWERYCR 87 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~--~~~pTig~~~~~-i~~~~~~l~I~DtpG~e~~--------~~~~~~~~~ 87 (329)
+..+|+++|.+|||||||+|++++.++.. ...+|+...... ++.++.++.+|||||+.+. ......+++
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~ 85 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA 85 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHh
Confidence 45689999999999999999999988742 223344333332 4566789999999998763 345566788
Q ss_pred ccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEE
Q psy2970 88 GVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPIL 167 (329)
Q Consensus 88 ~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIi 167 (329)
++|+++ +|+|++++.+.. ..++.+.+... ..++|++
T Consensus 86 ~ad~il-----------------------------------------~VvD~~~~~~~~--~~~i~~~l~~~-~~~~p~i 121 (301)
T 1wf3_A 86 DVNAVV-----------------------------------------WVVDLRHPPTPE--DELVARALKPL-VGKVPIL 121 (301)
T ss_dssp SCSEEE-----------------------------------------EEEETTSCCCHH--HHHHHHHHGGG-TTTSCEE
T ss_pred cCCEEE-----------------------------------------EEEECCCCCChH--HHHHHHHHHhh-cCCCCEE
Confidence 999999 999999865433 34444333321 2479999
Q ss_pred EEEEcCCCCChhh-HHHHHHHh-C-CcEEEEeccchHHHHHHhhhhcC
Q psy2970 168 VLGNKRDLPNALD-EKELIDRI-M-IDFWITLTLLIRWCESFLHHFGS 212 (329)
Q Consensus 168 LVgNK~Dl~~~~e-~~~l~~~~-~-~~~~etSAk~~~~~~~~l~~i~~ 212 (329)
+|+||+|+.+..+ ..+..+++ + .+++++||+++.+.+.+++.+..
T Consensus 122 lV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~ 169 (301)
T 1wf3_A 122 LVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLA 169 (301)
T ss_dssp EEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHT
T ss_pred EEEECcccCCchHHHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999987655 55555555 2 46899999998888888877643
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.2e-19 Score=155.12 Aligned_cols=149 Identities=17% Similarity=0.171 Sum_probs=102.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCC---CCCC-CCceeeeEEEee-CceEEEEEEecCCC----------ccccch
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQF---SQDM-IPTVGFNMRKIT-KGNVTIKVWDIGGQ----------PRFRSM 81 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~---~~~~-~pTig~~~~~i~-~~~~~l~I~DtpG~----------e~~~~~ 81 (329)
....++|+++|.+|||||||+|++.+++. .... ..|....+..+. .++..+.+|||||. +.+..+
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 34578999999999999999999998863 1121 223344444554 56678999999994 444556
Q ss_pred HHHHhhc---cceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC
Q psy2970 82 WERYCRG---VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK 158 (329)
Q Consensus 82 ~~~~~~~---ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~ 158 (329)
...+++. +|+++ +|+|.++..+ +....++..+.+
T Consensus 106 ~~~~~~~~~~~d~vi-----------------------------------------~v~d~~~~~~-~~~~~~~~~l~~- 142 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMI-----------------------------------------LMMDARRPLT-ELDRRMIEWFAP- 142 (223)
T ss_dssp HHHHHHHCTTEEEEE-----------------------------------------EEEETTSCCC-HHHHHHHHHHGG-
T ss_pred HHHHHhcCcCcCEEE-----------------------------------------EEEeCCCCCC-HHHHHHHHHHHh-
Confidence 6677776 55577 9999987543 222333333322
Q ss_pred CcCCCCcEEEEEEcCCCCChhh----HH---HHHHH-------hCCcEEEEeccchHHHHHHhhhhc
Q psy2970 159 PQLIGIPILVLGNKRDLPNALD----EK---ELIDR-------IMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 159 ~~~~~iPIiLVgNK~Dl~~~~e----~~---~l~~~-------~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.++|+++|+||+|+.+..+ .+ +.... .+.+++++||+++.+.+++++.+.
T Consensus 143 ---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~ 206 (223)
T 4dhe_A 143 ---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIE 206 (223)
T ss_dssp ---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHH
T ss_pred ---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHH
Confidence 5689999999999987633 12 12222 356899999999877777776653
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-18 Score=168.00 Aligned_cols=120 Identities=22% Similarity=0.352 Sum_probs=91.3
Q ss_pred CceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhc
Q psy2970 51 PTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLF 130 (329)
Q Consensus 51 pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (329)
||+|.....++.+++.+++|||+||+.++.+|..++++++++|
T Consensus 187 ~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iI------------------------------------- 229 (362)
T 1zcb_A 187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSIL------------------------------------- 229 (362)
T ss_dssp CCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEE-------------------------------------
T ss_pred CccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEE-------------------------------------
Confidence 4556666666677899999999999999999999999999999
Q ss_pred ceeEEEEECCC----------cccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC---------------------hh
Q psy2970 131 QLIKYMVDAAD----------TDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN---------------------AL 179 (329)
Q Consensus 131 ~~~~lV~Dvt~----------~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~---------------------~~ 179 (329)
+|||+++ .++|+++..|+..+.+.....++|++||+||+|+.+ ..
T Consensus 230 ----fv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~ 305 (362)
T 1zcb_A 230 ----FLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLR 305 (362)
T ss_dssp ----EEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHH
T ss_pred ----EEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHH
Confidence 9999999 789999999999999877778999999999999852 13
Q ss_pred hHHHHH--------H---HhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 180 DEKELI--------D---RIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 180 e~~~l~--------~---~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
++.+++ + ..++.+++|||+++.+.+..+..+.
T Consensus 306 e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~ 348 (362)
T 1zcb_A 306 DVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVK 348 (362)
T ss_dssp HHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHH
Confidence 444444 1 3457899999999877777776553
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.9e-19 Score=172.13 Aligned_cols=108 Identities=15% Similarity=0.339 Sum_probs=86.8
Q ss_pred ceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECC--
Q psy2970 63 GNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAA-- 140 (329)
Q Consensus 63 ~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt-- 140 (329)
+.+.+++|||+||++++.+|..++++++++| +|||++
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI-----------------------------------------~v~dis~y 219 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVI-----------------------------------------FCAAISEY 219 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEE-----------------------------------------EEEEGGGT
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEE-----------------------------------------EEEECccc
Confidence 5689999999999999999999999999999 999998
Q ss_pred --------CcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh--------------------------hhHHHHHH
Q psy2970 141 --------DTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA--------------------------LDEKELID 186 (329)
Q Consensus 141 --------~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~--------------------------~e~~~l~~ 186 (329)
+.++|+++..|+.++.+.....++|++|||||+|+.++ .++.+++.
T Consensus 220 dq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~ 299 (354)
T 2xtz_A 220 DQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVK 299 (354)
T ss_dssp TCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHH
Confidence 88999999999999988766688999999999998421 23445533
Q ss_pred H-h---------------CCcEEEEeccchHHHHHHhhhhc
Q psy2970 187 R-I---------------MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 187 ~-~---------------~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+ + .+.+++|||++..+.+..++.+.
T Consensus 300 ~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 300 KKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 2 1 23468999999777777776553
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=7.9e-18 Score=166.40 Aligned_cols=119 Identities=22% Similarity=0.302 Sum_probs=95.0
Q ss_pred ceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcc
Q psy2970 52 TVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQ 131 (329)
Q Consensus 52 Tig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (329)
|+|+....+..+++.++||||+||++++.+|..|+++++++|
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iI-------------------------------------- 245 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAII-------------------------------------- 245 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEE--------------------------------------
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEE--------------------------------------
Confidence 444444445556789999999999999999999999999999
Q ss_pred eeEEEEECCC----------cccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh-----------------------
Q psy2970 132 LIKYMVDAAD----------TDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA----------------------- 178 (329)
Q Consensus 132 ~~~lV~Dvt~----------~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~----------------------- 178 (329)
+|||+++ .++|+++..|+.++.+.....++|++|||||+|+.++
T Consensus 246 ---fV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~ 322 (402)
T 1azs_C 246 ---FVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPE 322 (402)
T ss_dssp ---EEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCS
T ss_pred ---EEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhhhhcccccchhhcccccccccccc
Confidence 9999999 8999999999999988766789999999999998421
Q ss_pred ------------hhHHHHH-----HH--------hCCcEEEEeccchHHHHHHhhhhc
Q psy2970 179 ------------LDEKELI-----DR--------IMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 179 ------------~e~~~l~-----~~--------~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.++..++ +. .++.+++|||++..+.+..+..+.
T Consensus 323 ~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~ 380 (402)
T 1azs_C 323 DATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCR 380 (402)
T ss_dssp SCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHH
Confidence 1233332 22 245688999999777777776553
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.2e-18 Score=171.41 Aligned_cols=147 Identities=16% Similarity=0.163 Sum_probs=92.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCceee--eEEEeeCceEEEEEEecCCCccccchHH--------HHh
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVGF--NMRKITKGNVTIKVWDIGGQPRFRSMWE--------RYC 86 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig~--~~~~i~~~~~~l~I~DtpG~e~~~~~~~--------~~~ 86 (329)
++.++|+++|.+|||||||+|+|.+.+.. ....|+++. ....+..++.++.+|||||++++...+. .++
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 45799999999999999999999987532 222333332 2344666778999999999987665432 356
Q ss_pred hccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHH---HHHHHHHHHhCCcCCC
Q psy2970 87 RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEA---SRNELHALIEKPQLIG 163 (329)
Q Consensus 87 ~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~---~~~~l~~i~~~~~~~~ 163 (329)
+.+|+++ +|+|++++.+++. ...++..+ .+
T Consensus 311 ~~aD~vl-----------------------------------------~VvD~s~~~s~~~~~~~~~~l~~l------~~ 343 (476)
T 3gee_A 311 AEADLIL-----------------------------------------YLLDLGTERLDDELTEIRELKAAH------PA 343 (476)
T ss_dssp SSCSEEE-----------------------------------------EEEETTTCSSGGGHHHHHHHHHHC------TT
T ss_pred ccCCEEE-----------------------------------------EEEECCCCcchhhhHHHHHHHHhc------CC
Confidence 7788888 9999999988753 33333333 27
Q ss_pred CcEEEEEEcCCCCChhhH--HHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 164 IPILVLGNKRDLPNALDE--KELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 164 iPIiLVgNK~Dl~~~~e~--~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+++|+||+|+.+..+. +++.+....+++++||+++.+.+++++.+.
T Consensus 344 ~piIvV~NK~Dl~~~~~~~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~ 393 (476)
T 3gee_A 344 AKFLTVANKLDRAANADALIRAIADGTGTEVIGISALNGDGIDTLKQHMG 393 (476)
T ss_dssp SEEEEEEECTTSCTTTHHHHHHHHHHHTSCEEECBTTTTBSHHHHHHHHT
T ss_pred CCEEEEEECcCCCCccchhHHHHHhcCCCceEEEEECCCCCHHHHHHHHH
Confidence 899999999999876432 345555347899999999777777776654
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.7e-17 Score=158.44 Aligned_cols=151 Identities=16% Similarity=0.140 Sum_probs=112.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCC--CCCceeeeEEEeeCceEEEEEEecCCCccccc---------hHHHHh
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQD--MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS---------MWERYC 86 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~--~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~---------~~~~~~ 86 (329)
...++|+++|.+|||||||+|++.+..+... ...|.+.....+..+...+.+|||||...... ....+.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 4678999999999999999999998875321 23455555555666678899999999865321 111223
Q ss_pred hccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc--cHHHHHHHHHHHHhCCcCCCC
Q psy2970 87 RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD--KLEASRNELHALIEKPQLIGI 164 (329)
Q Consensus 87 ~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~--S~~~~~~~l~~i~~~~~~~~i 164 (329)
..+|+++ +|+|++++. +++....|+.++.... .+.
T Consensus 245 ~~ad~il-----------------------------------------lV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~ 281 (357)
T 2e87_A 245 YLGNLII-----------------------------------------YIFDPSEHCGFPLEEQIHLFEEVHGEF--KDL 281 (357)
T ss_dssp GTCSEEE-----------------------------------------EEECTTCTTSSCHHHHHHHHHHHHHHT--TTS
T ss_pred hcCCEEE-----------------------------------------EEEeCCccccCCHHHHHHHHHHHHHhc--CCC
Confidence 3456666 999999887 7788888888876642 279
Q ss_pred cEEEEEEcCCCCChhh---HHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 165 PILVLGNKRDLPNALD---EKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 165 PIiLVgNK~Dl~~~~e---~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+++|+||+|+.+..+ ..++++..+++++++||+++.+.+++++.+.
T Consensus 282 piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~ 331 (357)
T 2e87_A 282 PFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTGIDLVKEEII 331 (357)
T ss_dssp CEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHH
T ss_pred CEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHH
Confidence 9999999999987633 4456667789999999999888888776664
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=6.6e-18 Score=167.07 Aligned_cols=142 Identities=15% Similarity=0.132 Sum_probs=96.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcee--eeEEEeeCceEEEEEEecCCCcc---------ccchHHHHhhcc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVG--FNMRKITKGNVTIKVWDIGGQPR---------FRSMWERYCRGV 89 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig--~~~~~i~~~~~~l~I~DtpG~e~---------~~~~~~~~~~~a 89 (329)
+|+++|.||||||||+|+|++++.. ....|+++ ..+..+..++..+.+|||||++. ++.++..+++++
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~a 82 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA 82 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhC
Confidence 7999999999999999999988743 12223332 33445555667889999999875 244567789999
Q ss_pred ceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEE
Q psy2970 90 NAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVL 169 (329)
Q Consensus 90 d~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLV 169 (329)
|+++ +|+|+++..+... .++.++++. .++|+++|
T Consensus 83 d~il-----------------------------------------~V~D~~~~~~~~d--~~i~~~l~~---~~~p~ilv 116 (439)
T 1mky_A 83 DLVL-----------------------------------------FVVDGKRGITKED--ESLADFLRK---STVDTILV 116 (439)
T ss_dssp SEEE-----------------------------------------EEEETTTCCCHHH--HHHHHHHHH---HTCCEEEE
T ss_pred CEEE-----------------------------------------EEEECCCCCCHHH--HHHHHHHHH---cCCCEEEE
Confidence 9999 9999987654332 233333332 36899999
Q ss_pred EEcCCCCCh--hhH-HHHHHHhCC-cEEEEeccchHHHHHHhhhh
Q psy2970 170 GNKRDLPNA--LDE-KELIDRIMI-DFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 170 gNK~Dl~~~--~e~-~~l~~~~~~-~~~etSAk~~~~~~~~l~~i 210 (329)
+||+|+.+. .+. .++. ++++ +++++||+++.+.+++++.+
T Consensus 117 ~NK~D~~~~~~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i 160 (439)
T 1mky_A 117 ANKAENLREFEREVKPELY-SLGFGEPIPVSAEHNINLDTMLETI 160 (439)
T ss_dssp EESCCSHHHHHHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHH
T ss_pred EeCCCCccccHHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHH
Confidence 999998654 122 3443 4566 79999999977777766554
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-17 Score=168.50 Aligned_cols=145 Identities=17% Similarity=0.178 Sum_probs=105.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCCc-eeeeEEEeeCceEEEEEEecCCCc-cccc--------hHHHHh
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQF--SQDMIPT-VGFNMRKITKGNVTIKVWDIGGQP-RFRS--------MWERYC 86 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~--~~~~~pT-ig~~~~~i~~~~~~l~I~DtpG~e-~~~~--------~~~~~~ 86 (329)
+.++|+++|.+|||||||+|++.+.+. ...+..| .......++.++.++.+|||||+. .+.. ....++
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 458999999999999999999998753 2333333 233334456667889999999988 5542 235678
Q ss_pred hccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcE
Q psy2970 87 RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPI 166 (329)
Q Consensus 87 ~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPI 166 (329)
+.+|+++ +|+|++++.+++... ++..+ .+.|+
T Consensus 322 ~~aD~vl-----------------------------------------~VvD~s~~~s~~~~~-il~~l------~~~pi 353 (482)
T 1xzp_A 322 EKADIVL-----------------------------------------FVLDASSPLDEEDRK-ILERI------KNKRY 353 (482)
T ss_dssp HHCSEEE-----------------------------------------EEEETTSCCCHHHHH-HHHHH------TTSSE
T ss_pred hcccEEE-----------------------------------------EEecCCCCCCHHHHH-HHHHh------cCCCE
Confidence 8999999 999999988876532 23222 36899
Q ss_pred EEEEEcCCCCChhhHHHHHHHhC--CcEEEEeccchHHHHHHhhhhc
Q psy2970 167 LVLGNKRDLPNALDEKELIDRIM--IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 167 iLVgNK~Dl~~~~e~~~l~~~~~--~~~~etSAk~~~~~~~~l~~i~ 211 (329)
++|+||+|+.+..+.+++.+..+ .+++++||+++.+.+++++.+.
T Consensus 354 ivV~NK~DL~~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL~~~l~ 400 (482)
T 1xzp_A 354 LVVINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESIY 400 (482)
T ss_dssp EEEEEECSSCCCCCHHHHHHHHTCSTTEEEEEGGGTCCHHHHHHHHH
T ss_pred EEEEECcccccccCHHHHHHHhcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 99999999976533344443333 6899999999877777776664
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.72 E-value=7.4e-18 Score=163.02 Aligned_cols=149 Identities=19% Similarity=0.278 Sum_probs=112.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC-CCC-CCceeeeEEEeeCce-EEEEEEecCCCc----cccchHHHHhhc---cce
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFS-QDM-IPTVGFNMRKITKGN-VTIKVWDIGGQP----RFRSMWERYCRG---VNA 91 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~-~~~-~pTig~~~~~i~~~~-~~l~I~DtpG~e----~~~~~~~~~~~~---ad~ 91 (329)
+|+|+|.+|||||||++++++.++. ..+ .+|....+..+...+ ..+.+|||||+. .+..+...+++. +++
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ 239 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRV 239 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCE
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccE
Confidence 5889999999999999999987643 122 245455554454443 689999999963 344455556554 888
Q ss_pred eEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCC---cccHHHHHHHHHHHHhCC-cCCCCcEE
Q psy2970 92 IVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAAD---TDKLEASRNELHALIEKP-QLIGIPIL 167 (329)
Q Consensus 92 iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~---~~S~~~~~~~l~~i~~~~-~~~~iPIi 167 (329)
++ +|+|+++ +++++.+..|+.++.... ...++|++
T Consensus 240 ll-----------------------------------------~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~i 278 (342)
T 1lnz_A 240 IV-----------------------------------------HVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQI 278 (342)
T ss_dssp EE-----------------------------------------EEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBC
T ss_pred EE-----------------------------------------EEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEE
Confidence 88 9999998 788999888888886642 23689999
Q ss_pred EEEEcCCCCCh-hhHHHHHHHhC--CcEEEEeccchHHHHHHhhhhc
Q psy2970 168 VLGNKRDLPNA-LDEKELIDRIM--IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 168 LVgNK~Dl~~~-~e~~~l~~~~~--~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+||+|+.+. .+.+++++.+. .+++++||++...++++++.+.
T Consensus 279 lV~NK~Dl~~~~e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~ 325 (342)
T 1lnz_A 279 IVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVA 325 (342)
T ss_dssp BEEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHH
T ss_pred EEEECccCCCCHHHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHH
Confidence 99999999876 34677888887 7899999999777777766553
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-17 Score=164.99 Aligned_cols=146 Identities=13% Similarity=0.183 Sum_probs=102.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCceeee--EEEeeCceEEEEEEecCCC----------ccccchHH-H
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVGFN--MRKITKGNVTIKVWDIGGQ----------PRFRSMWE-R 84 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig~~--~~~i~~~~~~l~I~DtpG~----------e~~~~~~~-~ 84 (329)
..+||+++|.+|||||||+|++.++++. ....++++.+ ...+..++..+.+|||||+ |.|..++. .
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 4589999999999999999999988763 2222332322 2345555667999999998 44544443 4
Q ss_pred HhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCC
Q psy2970 85 YCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGI 164 (329)
Q Consensus 85 ~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~i 164 (329)
+++.+|+++ +|+|+++..+++.. .|+..+.+ .+.
T Consensus 254 ~~~~ad~~l-----------------------------------------lv~D~~~~~s~~~~-~~~~~~~~----~~~ 287 (436)
T 2hjg_A 254 AIDRSEVVA-----------------------------------------VVLDGEEGIIEQDK-RIAGYAHE----AGK 287 (436)
T ss_dssp HHHHCSEEE-----------------------------------------EEEETTTCCCHHHH-HHHHHHHH----TTC
T ss_pred HHHhCCEEE-----------------------------------------EEEcCCcCCcHHHH-HHHHHHHH----cCC
Confidence 788899999 99999998887665 45555543 578
Q ss_pred cEEEEEEcCCCCChhh------HHHHHHHh----CCcEEEEeccchHHHHHHhhhh
Q psy2970 165 PILVLGNKRDLPNALD------EKELIDRI----MIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 165 PIiLVgNK~Dl~~~~e------~~~l~~~~----~~~~~etSAk~~~~~~~~l~~i 210 (329)
|+++|+||+|+.+..+ .+++.+.+ +++++++||+++.+.+++++.+
T Consensus 288 ~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i 343 (436)
T 2hjg_A 288 AVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAI 343 (436)
T ss_dssp EEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHH
T ss_pred cEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHH
Confidence 9999999999976421 12333443 5799999999976666666554
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.7e-18 Score=166.47 Aligned_cols=144 Identities=18% Similarity=0.157 Sum_probs=97.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC--CC-CCCceeeeEEEeeCceEEEEEEecCCCc--------cccchHHHHhhcc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS--QD-MIPTVGFNMRKITKGNVTIKVWDIGGQP--------RFRSMWERYCRGV 89 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~--~~-~~pTig~~~~~i~~~~~~l~I~DtpG~e--------~~~~~~~~~~~~a 89 (329)
.+|+++|.+|||||||+|+|.+.++. .. ...|....+..+..++..+.+|||||++ .++.++..+++++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 68999999999999999999987653 11 1222233344566667789999999986 5667778889999
Q ss_pred ceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEE
Q psy2970 90 NAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVL 169 (329)
Q Consensus 90 d~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLV 169 (329)
|+++ +|+|+++..++.. .++.++++. .++|+++|
T Consensus 84 d~il-----------------------------------------~vvD~~~~~~~~d--~~~~~~l~~---~~~pvilv 117 (436)
T 2hjg_A 84 DVII-----------------------------------------FMVNGREGVTAAD--EEVAKILYR---TKKPVVLA 117 (436)
T ss_dssp SEEE-----------------------------------------EEEETTTCSCHHH--HHHHHHHTT---CCSCEEEE
T ss_pred CEEE-----------------------------------------EEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEE
Confidence 9999 9999998766443 445555543 57899999
Q ss_pred EEcCCCCChh-hHHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 170 GNKRDLPNAL-DEKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 170 gNK~Dl~~~~-e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
+||+|+.+.. +..++. ++++ +++++||+++.+.+++++.+.
T Consensus 118 ~NK~D~~~~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~ 160 (436)
T 2hjg_A 118 VNKLDNTEMRANIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVA 160 (436)
T ss_dssp EECCCC-----CCCSSG-GGSSCCCEECBTTTTBTHHHHHHHHH
T ss_pred EECccCccchhhHHHHH-HcCCCCeEEEeCcCCCChHHHHHHHH
Confidence 9999997642 222333 4555 789999999777777776653
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-16 Score=155.34 Aligned_cols=151 Identities=17% Similarity=0.100 Sum_probs=109.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCC---CCceeeeE-------------------EEeeCceEEEEEEecCC
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDM---IPTVGFNM-------------------RKITKGNVTIKVWDIGG 74 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~---~pTig~~~-------------------~~i~~~~~~l~I~DtpG 74 (329)
.++.++|+++|.+|+|||||+++|.+....... ..+++... .........+.+|||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 467899999999999999999999985433211 11111100 00012237899999999
Q ss_pred CccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHH
Q psy2970 75 QPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHA 154 (329)
Q Consensus 75 ~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~ 154 (329)
+++|.......+..+|+++ +|+|+++..++....+++..
T Consensus 85 h~~~~~~~~~~~~~~D~~i-----------------------------------------lVvda~~~~~~~qt~~~~~~ 123 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAI-----------------------------------------LVVAANEPFPQPQTREHFVA 123 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEE-----------------------------------------EEEETTSCSSCHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhCCEEE-----------------------------------------EEEECCCCCCcHHHHHHHHH
Confidence 9999988888999999999 99999988767777777665
Q ss_pred HHhCCcCCCCcEEEEEEcCCCCChhhHH----HHHHHh------CCcEEEEeccchHHHHHHhhhhc
Q psy2970 155 LIEKPQLIGIPILVLGNKRDLPNALDEK----ELIDRI------MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 155 i~~~~~~~~iPIiLVgNK~Dl~~~~e~~----~l~~~~------~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+... ...|+++|+||+|+.+..+.+ ++.+.+ +++++++||+++.+.+++++.+.
T Consensus 124 ~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~ 187 (403)
T 3sjy_A 124 LGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIE 187 (403)
T ss_dssp HHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHH
T ss_pred HHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHH
Confidence 5332 235899999999998864332 333333 57899999999877888777664
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.7e-17 Score=161.71 Aligned_cols=147 Identities=14% Similarity=0.177 Sum_probs=101.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCceeee--EEEeeCceEEEEEEecCC----------CccccchHH-
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQF-SQDMIPTVGFN--MRKITKGNVTIKVWDIGG----------QPRFRSMWE- 83 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~-~~~~~pTig~~--~~~i~~~~~~l~I~DtpG----------~e~~~~~~~- 83 (329)
...+||+++|.+|||||||+|++.+.+. .....++++.+ ...+..++..+.+||||| ++++..++.
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 3568999999999999999999997653 22222333322 234555666899999999 677776654
Q ss_pred HHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCC
Q psy2970 84 RYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIG 163 (329)
Q Consensus 84 ~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~ 163 (329)
.+++.+|+++ +|+|+++..+ +....++..+.+ .+
T Consensus 273 ~~~~~ad~~l-----------------------------------------lviD~~~~~~-~~~~~~~~~~~~----~~ 306 (456)
T 4dcu_A 273 KAIDRSEVVA-----------------------------------------VVLDGEEGII-EQDKRIAGYAHE----AG 306 (456)
T ss_dssp HHHHHCSEEE-----------------------------------------EEEETTTCCC-HHHHHHHHHHHH----TT
T ss_pred HHHhhCCEEE-----------------------------------------EEEeCCCCcC-HHHHHHHHHHHH----cC
Confidence 4788999999 9999987543 233334444433 56
Q ss_pred CcEEEEEEcCCCCCh-----hhHHHHHHHh-----CCcEEEEeccchHHHHHHhhhh
Q psy2970 164 IPILVLGNKRDLPNA-----LDEKELIDRI-----MIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 164 iPIiLVgNK~Dl~~~-----~e~~~l~~~~-----~~~~~etSAk~~~~~~~~l~~i 210 (329)
+|+++|+||+|+.+. .+..+.+++. .++++++||+++.+.+++++.+
T Consensus 307 ~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i 363 (456)
T 4dcu_A 307 KAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAI 363 (456)
T ss_dssp CEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHH
T ss_pred CCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHH
Confidence 899999999999754 3344444444 4799999999976666666554
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-16 Score=144.25 Aligned_cols=151 Identities=15% Similarity=0.115 Sum_probs=99.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCCc---eeeeEEEeeCceEEEEEEecCCCccccchH-----------
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQ-FSQDMIPT---VGFNMRKITKGNVTIKVWDIGGQPRFRSMW----------- 82 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~-~~~~~~pT---ig~~~~~i~~~~~~l~I~DtpG~e~~~~~~----------- 82 (329)
.+.++|+|+|.+|||||||++++++.. +...+.|+ .......+..++..+.+|||||+.++....
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~ 99 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCY 99 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence 457999999999999999999999877 44334433 233333455667889999999987653221
Q ss_pred HHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccH-HHHHHHHHHHHhCCcC
Q psy2970 83 ERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKL-EASRNELHALIEKPQL 161 (329)
Q Consensus 83 ~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~-~~~~~~l~~i~~~~~~ 161 (329)
..+++.+|+++ +|+|+++.... ..+..++.+.... .
T Consensus 100 ~~~~~~~d~il-----------------------------------------~V~d~~~~~~~~~~~~~~l~~~~~~--~ 136 (260)
T 2xtp_A 100 LLSAPGPHVLL-----------------------------------------LVTQLGRYTSQDQQAAQRVKEIFGE--D 136 (260)
T ss_dssp HHHTTCCSEEE-----------------------------------------EEEETTCCCHHHHHHHHHHHHHHCG--G
T ss_pred HhcCCCCcEEE-----------------------------------------EEEeCCCCCHHHHHHHHHHHHHhCc--h
Confidence 23567788888 99999863322 2233445444321 1
Q ss_pred CCCcEEEEEE-cCCCCCh-----------hhHHHHHHHhCCc---E--EEEeccchHHHHHHhhhhc
Q psy2970 162 IGIPILVLGN-KRDLPNA-----------LDEKELIDRIMID---F--WITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 162 ~~iPIiLVgN-K~Dl~~~-----------~e~~~l~~~~~~~---~--~etSAk~~~~~~~~l~~i~ 211 (329)
.+.|+++|+| |+|+.+. .+++++.+.++.. + +++||++..+.+++++.+.
T Consensus 137 ~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~ 203 (260)
T 2xtp_A 137 AMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIE 203 (260)
T ss_dssp GGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred hhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHH
Confidence 1345555555 9999754 1234467777643 2 7899999877787776653
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.9e-18 Score=168.76 Aligned_cols=146 Identities=15% Similarity=0.117 Sum_probs=101.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCC---CCCCCceeeeEEEeeCce-EEEEEEecCCCccccch-------HHHH
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFS---QDMIPTVGFNMRKITKGN-VTIKVWDIGGQPRFRSM-------WERY 85 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~---~~~~pTig~~~~~i~~~~-~~l~I~DtpG~e~~~~~-------~~~~ 85 (329)
....++|+++|..|+|||||+++++++++. .....|+......+.... .++.+|||||++++..+ ...+
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 345789999999999999999999988763 122233344444444333 38999999999887654 3557
Q ss_pred hhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCc
Q psy2970 86 CRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIP 165 (329)
Q Consensus 86 ~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iP 165 (329)
++.+|+++ +|+|++..+ ....|+..+.+. ++|
T Consensus 111 l~~aD~vl-----------------------------------------lVvD~~~~~---~~~~~l~~l~~~----~~p 142 (423)
T 3qq5_A 111 FYRADCGI-----------------------------------------LVTDSAPTP---YEDDVVNLFKEM----EIP 142 (423)
T ss_dssp HTSCSEEE-----------------------------------------EECSSSCCH---HHHHHHHHHHHT----TCC
T ss_pred HhcCCEEE-----------------------------------------EEEeCCChH---HHHHHHHHHHhc----CCC
Confidence 88899999 999994333 334455555432 789
Q ss_pred EEEEEEcCCCCChh---hHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 166 ILVLGNKRDLPNAL---DEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 166 IiLVgNK~Dl~~~~---e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+++|+||+|+.++. ..++++++++++++++||+++.+.+++++.+
T Consensus 143 iIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L 190 (423)
T 3qq5_A 143 FVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTI 190 (423)
T ss_dssp EEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHH
T ss_pred EEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHH
Confidence 99999999998763 4566777788999999999955555555444
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-16 Score=142.24 Aligned_cols=151 Identities=13% Similarity=0.078 Sum_probs=96.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCC----ceeeeEEEeeCceEEEEEEecCCCcc-----------ccch
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIP----TVGFNMRKITKGNVTIKVWDIGGQPR-----------FRSM 81 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~p----Tig~~~~~i~~~~~~l~I~DtpG~e~-----------~~~~ 81 (329)
..+.++|+|+|++|||||||+|++++..+.....+ |.......+..++..+.+|||||... +...
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 105 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRC 105 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence 34679999999999999999999999887544433 22233334556677899999999543 2333
Q ss_pred HHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC-c
Q psy2970 82 WERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP-Q 160 (329)
Q Consensus 82 ~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~-~ 160 (329)
...+++++|+++ +|+|+++... ....++..+.+.. .
T Consensus 106 ~~~~~~~~~~~l-----------------------------------------~v~d~~~~~~--~~~~~l~~~~~~~~~ 142 (239)
T 3lxx_A 106 ILLTSPGPHALL-----------------------------------------LVVPLGRYTE--EEHKATEKILKMFGE 142 (239)
T ss_dssp HHHTTTCCSEEE-----------------------------------------EEEETTCCSS--HHHHHHHHHHHHHHH
T ss_pred HHhcCCCCcEEE-----------------------------------------EEeeCCCCCH--HHHHHHHHHHHHhhh
Confidence 344455678888 9999986544 2223333332210 0
Q ss_pred CCCCcEEEEEEcCCCCCh-----------hhHHHHHHHhCCcEEEEeccc-----hHHHHHHhhhh
Q psy2970 161 LIGIPILVLGNKRDLPNA-----------LDEKELIDRIMIDFWITLTLL-----IRWCESFLHHF 210 (329)
Q Consensus 161 ~~~iPIiLVgNK~Dl~~~-----------~e~~~l~~~~~~~~~etSAk~-----~~~~~~~l~~i 210 (329)
....|++||+||+|+.+. ..++++.++++..+...+++. .....+++..+
T Consensus 143 ~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i 208 (239)
T 3lxx_A 143 RARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLI 208 (239)
T ss_dssp HHGGGEEEEEECGGGC------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred hccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHH
Confidence 123599999999998653 246778889998888777663 24455555544
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.67 E-value=2.4e-16 Score=148.91 Aligned_cols=147 Identities=14% Similarity=0.079 Sum_probs=101.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCceeeeEE-EeeCceEEEEEEecCCCc-cc--------cchHHHHh
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTVGFNMR-KITKGNVTIKVWDIGGQP-RF--------RSMWERYC 86 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~--~~~~pTig~~~~-~i~~~~~~l~I~DtpG~e-~~--------~~~~~~~~ 86 (329)
+..+|+++|++|||||||+|++.+.++. .....|+..... .+..++.++.+|||||.. .. ......++
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l 86 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI 86 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHH
Confidence 4568999999999999999999998763 122223322222 245667889999999987 32 22223445
Q ss_pred hccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcE
Q psy2970 87 RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPI 166 (329)
Q Consensus 87 ~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPI 166 (329)
+.+|+++ +|+|.++ +.....++.+.+.. .+.|+
T Consensus 87 ~~~D~vl-----------------------------------------~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ 119 (301)
T 1ega_A 87 GDVELVI-----------------------------------------FVVEGTR---WTPDDEMVLNKLRE---GKAPV 119 (301)
T ss_dssp CCEEEEE-----------------------------------------EEEETTC---CCHHHHHHHHHHHS---SSSCE
T ss_pred hcCCEEE-----------------------------------------EEEeCCC---CCHHHHHHHHHHHh---cCCCE
Confidence 6666666 9999977 33333444444432 47899
Q ss_pred EEEEEcCCCCC-hh----hHHHHHHHhCC-cEEEEeccchHHHHHHhhhhcC
Q psy2970 167 LVLGNKRDLPN-AL----DEKELIDRIMI-DFWITLTLLIRWCESFLHHFGS 212 (329)
Q Consensus 167 iLVgNK~Dl~~-~~----e~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~~ 212 (329)
++|+||+|+.. .. ..+++.+.++. .++++||+++...+.+++.+..
T Consensus 120 ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~ 171 (301)
T 1ega_A 120 ILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRK 171 (301)
T ss_dssp EEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHT
T ss_pred EEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHH
Confidence 99999999987 32 24455556665 6999999998888887776643
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-16 Score=146.81 Aligned_cols=160 Identities=16% Similarity=0.129 Sum_probs=87.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCC-CCC-------CCceeeeEEEe----eCceEEEEEEecCCCcc-------cc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFS-QDM-------IPTVGFNMRKI----TKGNVTIKVWDIGGQPR-------FR 79 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~-------~pTig~~~~~i----~~~~~~l~I~DtpG~e~-------~~ 79 (329)
.+++|+++|.+|+|||||+|++++.+.. ..+ .+|++...... ++..+++.+|||||..+ +.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 4699999999999999999998876543 333 67777666542 34447999999999732 33
Q ss_pred chH-------HHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHH
Q psy2970 80 SMW-------ERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNEL 152 (329)
Q Consensus 80 ~~~-------~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l 152 (329)
.+. ..+++....+- |. ....-..+++++++|.++....+....++
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~-------------r~---------------~~~d~r~~~~l~~i~~~~~~~~~~d~~~l 138 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVN-------------RR---------------QMPDNRVQCCLYFIAPSGHGLKPLDIEFM 138 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSC-------------CC---------------SCCCCCCCEEEEEECSCCSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccc-------------cc---------------cccCCceeEEEEEecCCCCCCCHHHHHHH
Confidence 333 34444311111 00 00000123444888766533223334444
Q ss_pred HHHHhCCcCCCCcEEEEEEcCCCCChhhH-------HHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 153 HALIEKPQLIGIPILVLGNKRDLPNALDE-------KELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 153 ~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~-------~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.+.. ++|+++|+||+|+....+. .+..+..+++++++||++....+++.+.+.
T Consensus 139 ~~l~~-----~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~ 199 (274)
T 3t5d_A 139 KRLHE-----KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIK 199 (274)
T ss_dssp HHHTT-----TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHH
T ss_pred HHHhc-----cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHh
Confidence 44422 7899999999999865433 233345578999999999777777766554
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-15 Score=149.54 Aligned_cols=139 Identities=17% Similarity=0.204 Sum_probs=103.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC--------CCCC-----------CCCCceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG--------QFSQ-----------DMIPTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~--------~~~~-----------~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
++.++|+++|.+|+|||||+++|.+. .+.. ....|+......++.+...+.+|||||+++|
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 56799999999999999999999872 2210 1122444444456667788999999999999
Q ss_pred cchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC
Q psy2970 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK 158 (329)
Q Consensus 79 ~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~ 158 (329)
......+++.+|+++ +|+|+++... .....++..+..
T Consensus 89 ~~~~~~~~~~aD~~i-----------------------------------------lVvda~~g~~-~qt~~~l~~~~~- 125 (405)
T 2c78_A 89 IKNMITGAAQMDGAI-----------------------------------------LVVSAADGPM-PQTREHILLARQ- 125 (405)
T ss_dssp HHHHHHHHTTCSSEE-----------------------------------------EEEETTTCCC-HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCCEEE-----------------------------------------EEEECCCCCc-HHHHHHHHHHHH-
Confidence 888888899999999 9999988653 344555544432
Q ss_pred CcCCCCc-EEEEEEcCCCCC-hh-------hHHHHHHHhC-----CcEEEEeccchHH
Q psy2970 159 PQLIGIP-ILVLGNKRDLPN-AL-------DEKELIDRIM-----IDFWITLTLLIRW 202 (329)
Q Consensus 159 ~~~~~iP-IiLVgNK~Dl~~-~~-------e~~~l~~~~~-----~~~~etSAk~~~~ 202 (329)
.++| +++|+||+|+.+ +. +..++.++++ .+++++||+++.+
T Consensus 126 ---~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 126 ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp ---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred ---cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence 4678 899999999984 21 3445666665 6899999999644
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-16 Score=159.10 Aligned_cols=144 Identities=13% Similarity=0.049 Sum_probs=98.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCC--CC-------------------------------CCCCCceeeeEEEeeCc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQ--FS-------------------------------QDMIPTVGFNMRKITKG 63 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~--~~-------------------------------~~~~pTig~~~~~i~~~ 63 (329)
.+..+||+++|.+|+|||||+++|+... +. .....|+...+..++.+
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 4678999999999999999999997541 11 01123444555567778
Q ss_pred eEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc
Q psy2970 64 NVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD 143 (329)
Q Consensus 64 ~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~ 143 (329)
+..+.||||||+++|......+++.+|+++ +|+|+++..
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~l-----------------------------------------lVvDa~~g~ 148 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAI-----------------------------------------LCVDCSTNA 148 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEE-----------------------------------------EEEECCC--
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEE-----------------------------------------EEEECCCCc
Confidence 889999999999999998899999999999 999999865
Q ss_pred cHHH-----HHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh--h-------hHHHHHHHh-----CCcEEEEeccchHHH
Q psy2970 144 KLEA-----SRNELHALIEKPQLIGIPILVLGNKRDLPNA--L-------DEKELIDRI-----MIDFWITLTLLIRWC 203 (329)
Q Consensus 144 S~~~-----~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~--~-------e~~~l~~~~-----~~~~~etSAk~~~~~ 203 (329)
++.. .......+... ....|++||+||+|+.+. . +..++.+++ +++++++||+++.+.
T Consensus 149 ~~~~~~~~~qt~e~~~~~~~--~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi 225 (483)
T 3p26_A 149 FESGFDLDGQTKEHMLLASS--LGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGV 225 (483)
T ss_dssp ----CCCCHHHHHHHHHHHH--TTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTS
T ss_pred cccccchhhhHHHHHHHHHH--cCCCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCc
Confidence 4322 12222222221 122469999999999862 1 223333344 357999999995443
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-16 Score=158.54 Aligned_cols=144 Identities=17% Similarity=0.184 Sum_probs=100.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC--CCCC-------------------------------CCCCceeeeEEEeeCce
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG--QFSQ-------------------------------DMIPTVGFNMRKITKGN 64 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~--~~~~-------------------------------~~~pTig~~~~~i~~~~ 64 (329)
++.++|+++|.+|+|||||+++|+.. .+.. ....|+...+..++.+.
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 46799999999999999999999864 3321 12345555556677788
Q ss_pred EEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCccc
Q psy2970 65 VTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDK 144 (329)
Q Consensus 65 ~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S 144 (329)
..+.+|||||+++|......+++.+|+++ +|+|+++ .+
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~i-----------------------------------------lVvDa~~-gs 121 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAI-----------------------------------------LVVSAKK-GE 121 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEE-----------------------------------------EEEECST-TH
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEE-----------------------------------------EEEECCC-Cc
Confidence 89999999999999888888999999999 9999998 67
Q ss_pred HHHHHHHH---HHHHhCCcCCCC-cEEEEEEcCCCCCh-----------hhHHHHHHHhC-----CcEEEEeccchHHH
Q psy2970 145 LEASRNEL---HALIEKPQLIGI-PILVLGNKRDLPNA-----------LDEKELIDRIM-----IDFWITLTLLIRWC 203 (329)
Q Consensus 145 ~~~~~~~l---~~i~~~~~~~~i-PIiLVgNK~Dl~~~-----------~e~~~l~~~~~-----~~~~etSAk~~~~~ 203 (329)
|+....|. .+........++ |+++++||+|+.+. .+..++.++++ ++++++||+++.+.
T Consensus 122 fe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v 200 (435)
T 1jny_A 122 YEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNI 200 (435)
T ss_dssp HHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTT
T ss_pred cccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccc
Confidence 77544322 121111112344 68999999999761 23555666666 67999999995544
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.2e-16 Score=144.75 Aligned_cols=166 Identities=16% Similarity=0.196 Sum_probs=106.9
Q ss_pred ChHHHHHHHHHHHhcC---CCCceEEEEEcCCCCCHHHHHHHHHcCCCCC------CCCCcee-----------------
Q psy2970 1 MFVLLNRILDWFKSLF---WKEEMELTLVGLQCSGKTTFVNVIASGQFSQ------DMIPTVG----------------- 54 (329)
Q Consensus 1 m~~~~~~~~~~~~~~~---~~k~lkIlllG~~gvGKSSLin~l~~~~~~~------~~~pTig----------------- 54 (329)
|..+++++.+.++..- .....+|+++|.+|||||||+|+|++.++.+ ...|+..
T Consensus 4 ~~~~~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g 83 (299)
T 2aka_B 4 LIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKG 83 (299)
T ss_dssp HHHHHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTT
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCC
Confidence 4567888888887653 2356799999999999999999999988731 1223310
Q ss_pred -----ee--------------------------EEEeeCceEEEEEEecCCCc-------------cccchHHHHhhccc
Q psy2970 55 -----FN--------------------------MRKITKGNVTIKVWDIGGQP-------------RFRSMWERYCRGVN 90 (329)
Q Consensus 55 -----~~--------------------------~~~i~~~~~~l~I~DtpG~e-------------~~~~~~~~~~~~ad 90 (329)
.+ +.-.......+.+|||||.. .+..+...+++.++
T Consensus 84 ~~~tt~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (299)
T 2aka_B 84 KKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKEN 163 (299)
T ss_dssp CCBCCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTT
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCC
Confidence 00 00000113679999999964 34456677888888
Q ss_pred eeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEE
Q psy2970 91 AIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLG 170 (329)
Q Consensus 91 ~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVg 170 (329)
++++ +|+|+++..+......++..+ . ..+.|+++|+
T Consensus 164 ~~il----------------------------------------~v~d~~~~~~~~~~~~~~~~~-~---~~~~~~i~V~ 199 (299)
T 2aka_B 164 CLIL----------------------------------------AVSPANSDLANSDALKIAKEV-D---PQGQRTIGVI 199 (299)
T ss_dssp EEEE----------------------------------------EEEESSSCGGGCHHHHHHHHH-C---TTCSSEEEEE
T ss_pred eEEE----------------------------------------EEecCCcchhhhHHHHHHHHh-C---CCCCeEEEEE
Confidence 7661 689998754444433444444 2 2578999999
Q ss_pred EcCCCCChhh-HHHHHHH-h-----C-CcEEEEeccchHHHHHHhhhh
Q psy2970 171 NKRDLPNALD-EKELIDR-I-----M-IDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 171 NK~Dl~~~~e-~~~l~~~-~-----~-~~~~etSAk~~~~~~~~l~~i 210 (329)
||+|+.+..+ ..+..+. + + .+++++||+++.+.+++++.+
T Consensus 200 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l 247 (299)
T 2aka_B 200 TKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAAL 247 (299)
T ss_dssp ECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHH
T ss_pred EccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHH
Confidence 9999976532 2233322 1 2 357889999966555555443
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.5e-16 Score=154.61 Aligned_cols=144 Identities=19% Similarity=0.169 Sum_probs=102.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCC--CC-------------------------------CCCCCceeeeEEEeeCc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQ--FS-------------------------------QDMIPTVGFNMRKITKG 63 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~--~~-------------------------------~~~~pTig~~~~~i~~~ 63 (329)
.+..++|+++|.+|+|||||+++|+... +. .....|+...+..++.+
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 3567999999999999999999995431 10 01234555566667777
Q ss_pred eEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc
Q psy2970 64 NVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD 143 (329)
Q Consensus 64 ~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~ 143 (329)
+..+.||||||+++|.......++.+|+++ +|+|+++..
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~i-----------------------------------------lVVDa~~g~ 132 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAV-----------------------------------------LVISARKGE 132 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEE-----------------------------------------EEEECCCCc
Confidence 889999999999999888888899999999 999998753
Q ss_pred c---HH---HHHHHHHHHHhCCcCCCCc-EEEEEEcCCCCCh-----------hhHHHHHHHhC------CcEEEEeccc
Q psy2970 144 K---LE---ASRNELHALIEKPQLIGIP-ILVLGNKRDLPNA-----------LDEKELIDRIM------IDFWITLTLL 199 (329)
Q Consensus 144 S---~~---~~~~~l~~i~~~~~~~~iP-IiLVgNK~Dl~~~-----------~e~~~l~~~~~------~~~~etSAk~ 199 (329)
. |+ ...+.+..+. ..++| +++|+||+|+... .+..++.++++ ++++++||++
T Consensus 133 ~e~~~~~~~qt~e~l~~~~----~~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~ 208 (439)
T 3j2k_7 133 FETGFEKGGQTREHAMLAK----TAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLT 208 (439)
T ss_pred cccccCCCchHHHHHHHHH----HcCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccC
Confidence 2 11 2222222221 24567 9999999999642 22344555555 4699999999
Q ss_pred hHHHHH
Q psy2970 200 IRWCES 205 (329)
Q Consensus 200 ~~~~~~ 205 (329)
+.+.++
T Consensus 209 G~ni~~ 214 (439)
T 3j2k_7 209 GANLKE 214 (439)
T ss_pred Cccccc
Confidence 666655
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.5e-17 Score=161.76 Aligned_cols=145 Identities=15% Similarity=0.186 Sum_probs=92.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCceeeeE--EEeeCceEEEEEEecCCCccccchHHH--------Hh
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVGFNM--RKITKGNVTIKVWDIGGQPRFRSMWER--------YC 86 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig~~~--~~i~~~~~~l~I~DtpG~e~~~~~~~~--------~~ 86 (329)
++.++|+++|++|||||||+|++.+.++. ....|+++.++ ..+..++.++.+|||||+..+....+. ++
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 35689999999999999999999986532 22233333322 235556788999999998765443332 45
Q ss_pred hccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcE
Q psy2970 87 RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPI 166 (329)
Q Consensus 87 ~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPI 166 (329)
+.+|+++ +|+|.+++.+.+. ..++..+ .+.|+
T Consensus 302 ~~aD~vl-----------------------------------------~VvD~s~~~~~~~-~~i~~~l------~~~pi 333 (462)
T 3geh_A 302 NTADLVL-----------------------------------------LTIDAATGWTTGD-QEIYEQV------KHRPL 333 (462)
T ss_dssp CSCSEEE-----------------------------------------EEEETTTCSCHHH-HHHHHHH------TTSCE
T ss_pred hcCCEEE-----------------------------------------EEeccCCCCCHHH-HHHHHhc------cCCcE
Confidence 6677777 9999998776544 3444444 23699
Q ss_pred EEEEEcCCCCChhhHHHHHHH-hCCcEEEEeccchHHHHHHhhhh
Q psy2970 167 LVLGNKRDLPNALDEKELIDR-IMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 167 iLVgNK~Dl~~~~e~~~l~~~-~~~~~~etSAk~~~~~~~~l~~i 210 (329)
++|+||+|+.+..+...+.+. .+.+++++||+++.+.+++++.+
T Consensus 334 ivV~NK~Dl~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL~~~i 378 (462)
T 3geh_A 334 ILVMNKIDLVEKQLITSLEYPENITQIVHTAAAQKQGIDSLETAI 378 (462)
T ss_dssp EEEEECTTSSCGGGSTTCCCCTTCCCEEEEBTTTTBSHHHHHHHH
T ss_pred EEEEECCCCCcchhhHHHHHhccCCcEEEEECCCCCCHHHHHHHH
Confidence 999999999876443211110 34689999999977777776655
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-15 Score=149.43 Aligned_cols=151 Identities=15% Similarity=0.107 Sum_probs=94.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCC--ceeeeEEEee-------------------C----ceEEEE
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQ---FSQDMIP--TVGFNMRKIT-------------------K----GNVTIK 68 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~---~~~~~~p--Tig~~~~~i~-------------------~----~~~~l~ 68 (329)
.+..++|+++|..++|||||+++|.+.. +.....+ |++..+.... + ....+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 4567999999999999999999998543 3333334 6654443211 1 127899
Q ss_pred EEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHH
Q psy2970 69 VWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEAS 148 (329)
Q Consensus 69 I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~ 148 (329)
+|||||+++|..........+|+++ +|+|+++.......
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~i-----------------------------------------lVvda~~g~~~~qt 123 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAI-----------------------------------------LVIAANEPCPQPQT 123 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEE-----------------------------------------EEEETTSCSSCHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEE-----------------------------------------EEEECCCCCCCchh
Confidence 9999999988766666667779999 99999864322222
Q ss_pred HHHHHHHHhCCcCCCCcEEEEEEcCCCCChh-------hHHHHHHH---hCCcEEEEeccchHHHHHHhhhhc
Q psy2970 149 RNELHALIEKPQLIGIPILVLGNKRDLPNAL-------DEKELIDR---IMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 149 ~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~-------e~~~l~~~---~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.+.+..+.. ....|+++|+||+|+.+.. +..++.++ .+++++++||+++.+.+++++.+.
T Consensus 124 ~e~l~~~~~---l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~ 193 (408)
T 1s0u_A 124 KEHLMALEI---LGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQ 193 (408)
T ss_dssp HHHHHHHHH---TTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHH
T ss_pred HHHHHHHHH---cCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHH
Confidence 222222211 1225899999999997642 23334333 257899999999877788777664
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=149.58 Aligned_cols=138 Identities=19% Similarity=0.193 Sum_probs=101.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC-------CCC-----------CCCCCceeeeEEEeeCceEEEEEEecCCCcccc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG-------QFS-----------QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR 79 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~-------~~~-----------~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~ 79 (329)
++.++|+++|.+++|||||+++|.+. .+. .....|++..+..++.+...+.+|||||+++|.
T Consensus 1 k~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~ 80 (397)
T 1d2e_A 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV 80 (397)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred CCeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHH
Confidence 45799999999999999999999863 111 012345555555566677889999999999988
Q ss_pred chHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC
Q psy2970 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP 159 (329)
Q Consensus 80 ~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~ 159 (329)
.....+++.+|+++ +|+|+++.... ...+.+..+..
T Consensus 81 ~~~~~~~~~aD~~i-----------------------------------------lVvda~~g~~~-qt~e~l~~~~~-- 116 (397)
T 1d2e_A 81 KNMITGTAPLDGCI-----------------------------------------LVVAANDGPMP-QTREHLLLARQ-- 116 (397)
T ss_dssp HHHHHTSSCCSEEE-----------------------------------------EEEETTTCSCH-HHHHHHHHHHH--
T ss_pred HHHHhhHhhCCEEE-----------------------------------------EEEECCCCCCH-HHHHHHHHHHH--
Confidence 77788889999999 99999885432 33333333322
Q ss_pred cCCCCc-EEEEEEcCCCCC-h-------hhHHHHHHHhC-----CcEEEEeccchH
Q psy2970 160 QLIGIP-ILVLGNKRDLPN-A-------LDEKELIDRIM-----IDFWITLTLLIR 201 (329)
Q Consensus 160 ~~~~iP-IiLVgNK~Dl~~-~-------~e~~~l~~~~~-----~~~~etSAk~~~ 201 (329)
.++| +++++||+|+.+ + .+..++.++++ ++++++||+++.
T Consensus 117 --~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~ 170 (397)
T 1d2e_A 117 --IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCAL 170 (397)
T ss_dssp --TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHH
T ss_pred --cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcc
Confidence 4678 789999999984 2 23455666666 589999999944
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-15 Score=149.11 Aligned_cols=146 Identities=16% Similarity=0.136 Sum_probs=94.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcee--eeEEEeeCceEEEEEEecCCCccccchH------------HH
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVG--FNMRKITKGNVTIKVWDIGGQPRFRSMW------------ER 84 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig--~~~~~i~~~~~~l~I~DtpG~e~~~~~~------------~~ 84 (329)
.+||+++|++|||||||+|++.+.... ....|+++ .....+..++..+.+|||||+.+..... ..
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~ 259 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVD 259 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHH
Confidence 489999999999999999999987652 11222222 2223344455578999999985432211 23
Q ss_pred HhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCC
Q psy2970 85 YCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGI 164 (329)
Q Consensus 85 ~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~i 164 (329)
+++.+|+++ +|+|+++..+.+.. .+.+.+. ..+.
T Consensus 260 ~i~~ad~vl-----------------------------------------lv~d~~~~~~~~~~--~i~~~l~---~~~~ 293 (439)
T 1mky_A 260 SIEKADVVV-----------------------------------------IVLDATQGITRQDQ--RMAGLME---RRGR 293 (439)
T ss_dssp HHHHCSEEE-----------------------------------------EEEETTTCCCHHHH--HHHHHHH---HTTC
T ss_pred HHhhCCEEE-----------------------------------------EEEeCCCCCCHHHH--HHHHHHH---HcCC
Confidence 556677777 99999987665442 2333332 2578
Q ss_pred cEEEEEEcCCCCChhh--HH----HHHHHh----CCcEEEEeccchHHHHHHhhhhc
Q psy2970 165 PILVLGNKRDLPNALD--EK----ELIDRI----MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 165 PIiLVgNK~Dl~~~~e--~~----~l~~~~----~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+++|+||+|+.+..+ .+ ++++++ ..+++++||+++.+.+++++.+.
T Consensus 294 ~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~ 350 (439)
T 1mky_A 294 ASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMN 350 (439)
T ss_dssp EEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHH
T ss_pred CEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 9999999999976432 22 333433 47899999999777777776664
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-15 Score=151.07 Aligned_cols=142 Identities=19% Similarity=0.164 Sum_probs=100.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCC--CCC----------CCC-----------------------ceeeeEEEee
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQF--SQD----------MIP-----------------------TVGFNMRKIT 61 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~--~~~----------~~p-----------------------Tig~~~~~i~ 61 (329)
.+..++|+++|.+++|||||+++|+.+.. ... ..+ |+...+..+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 44568999999999999999999986431 100 112 2233344456
Q ss_pred CceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCC
Q psy2970 62 KGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAAD 141 (329)
Q Consensus 62 ~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~ 141 (329)
.+...+.+|||||+++|......++..+|+++ +|+|+++
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~i-----------------------------------------lVvDa~~ 139 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAI-----------------------------------------ILVDARY 139 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEE-----------------------------------------EEEETTT
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEE-----------------------------------------EEEECCC
Confidence 67788999999999999888888899999999 9999988
Q ss_pred cccHHHHHHHHHHHHhCCcCCCC-cEEEEEEcCCCCCh---------hhHHHHHHHhC-----CcEEEEeccchHHHH
Q psy2970 142 TDKLEASRNELHALIEKPQLIGI-PILVLGNKRDLPNA---------LDEKELIDRIM-----IDFWITLTLLIRWCE 204 (329)
Q Consensus 142 ~~S~~~~~~~l~~i~~~~~~~~i-PIiLVgNK~Dl~~~---------~e~~~l~~~~~-----~~~~etSAk~~~~~~ 204 (329)
... ....+++..+.. .++ |+++|+||+|+.+. .+..++.++++ .+++++||+++.+.+
T Consensus 140 g~~-~qt~~~l~~~~~----~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~ 212 (434)
T 1zun_B 140 GVQ-TQTRRHSYIASL----LGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV 212 (434)
T ss_dssp CSC-HHHHHHHHHHHH----TTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred CCc-HHHHHHHHHHHH----cCCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcc
Confidence 643 333344333322 234 59999999999862 22445666777 679999999965544
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-15 Score=148.18 Aligned_cols=152 Identities=16% Similarity=0.128 Sum_probs=101.7
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCC--ceeeeEEEee-------------------C----ceEEE
Q psy2970 16 FWKEEMELTLVGLQCSGKTTFVNVIASGQ---FSQDMIP--TVGFNMRKIT-------------------K----GNVTI 67 (329)
Q Consensus 16 ~~~k~lkIlllG~~gvGKSSLin~l~~~~---~~~~~~p--Tig~~~~~i~-------------------~----~~~~l 67 (329)
..+..++|+++|..++|||||+++|.+.. +.....+ |+...+.... + ....+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 34667999999999999999999998543 3333333 6655443211 1 12789
Q ss_pred EEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHH
Q psy2970 68 KVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEA 147 (329)
Q Consensus 68 ~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~ 147 (329)
.+|||||+++|..........+|+++ +|+|+++......
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~i-----------------------------------------lVvda~~g~~~~q 124 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAI-----------------------------------------LVIAANEPCPRPQ 124 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEE-----------------------------------------EEEETTSCSSCHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEE-----------------------------------------EEEECCCCCCChh
Confidence 99999999988766666677789999 9999986421222
Q ss_pred HHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhh-------HHHHHHH---hCCcEEEEeccchHHHHHHhhhhc
Q psy2970 148 SRNELHALIEKPQLIGIPILVLGNKRDLPNALD-------EKELIDR---IMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 148 ~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e-------~~~l~~~---~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
..+.+..+.. ....|+++|+||+|+.+..+ ..++.+. .+.+++++||+++.+.+.+++.+.
T Consensus 125 t~e~l~~~~~---~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~ 195 (410)
T 1kk1_A 125 TREHLMALQI---IGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIE 195 (410)
T ss_dssp HHHHHHHHHH---HTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHHHH---cCCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHH
Confidence 2222222211 12357999999999987532 2223322 257899999999777777776664
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-15 Score=139.73 Aligned_cols=118 Identities=15% Similarity=0.153 Sum_probs=82.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCC-ceeeeEEEeeCceEEEEEEecCCCccccchHHHHhh-------
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS--QDMIP-TVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCR------- 87 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~--~~~~p-Tig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~------- 87 (329)
.++++|+++|.+|||||||+|++.++++. ..+.+ |.......+..++..+.+|||||++++....+.+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~ 113 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence 36899999999999999999999998752 23333 333334445667789999999999988665555544
Q ss_pred --ccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHH-HHHHHHHHhCC-cCCC
Q psy2970 88 --GVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEAS-RNELHALIEKP-QLIG 163 (329)
Q Consensus 88 --~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~-~~~l~~i~~~~-~~~~ 163 (329)
.+|+++ +|+|++... +... ..++..+.+.. ....
T Consensus 114 ~~~~~~il-----------------------------------------~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~ 151 (262)
T 3def_A 114 NRTIDVLL-----------------------------------------YVDRLDVYA-VDELDKQVVIAITQTFGKEIW 151 (262)
T ss_dssp TCEECEEE-----------------------------------------EEEESSCSC-CCHHHHHHHHHHHHHHCGGGG
T ss_pred cCCCCEEE-----------------------------------------EEEcCCCCC-CCHHHHHHHHHHHHHhchhhh
Confidence 567777 999987654 3333 34554444321 1123
Q ss_pred CcEEEEEEcCCCCC
Q psy2970 164 IPILVLGNKRDLPN 177 (329)
Q Consensus 164 iPIiLVgNK~Dl~~ 177 (329)
.|+++|+||+|+..
T Consensus 152 ~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 152 CKTLLVLTHAQFSP 165 (262)
T ss_dssp GGEEEEEECTTCCC
T ss_pred cCEEEEEeCcccCC
Confidence 48999999999963
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=7.7e-16 Score=154.79 Aligned_cols=144 Identities=17% Similarity=0.152 Sum_probs=103.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCC-------CCCC--CCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhcc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQ-------FSQD--MIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGV 89 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~-------~~~~--~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~a 89 (329)
+.++|+++|..++|||||+++|.+.+ +... ...|+...+..+..++..+.+|||||+++|.......+..+
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~a 97 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADII 97 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSC
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhC
Confidence 46899999999999999999999876 2222 22455555555666778999999999999988888889999
Q ss_pred ceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCC---cccHHHHHHHHHHHHhCCcCCCCcE
Q psy2970 90 NAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAAD---TDKLEASRNELHALIEKPQLIGIPI 166 (329)
Q Consensus 90 d~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~---~~S~~~~~~~l~~i~~~~~~~~iPI 166 (329)
|+++ +|+|+++ +.+.+.+. .+ + ..++|+
T Consensus 98 D~~i-----------------------------------------lVvda~~g~~~qt~e~l~----~~-~---~~~ip~ 128 (482)
T 1wb1_A 98 DLAL-----------------------------------------IVVDAKEGPKTQTGEHML----IL-D---HFNIPI 128 (482)
T ss_dssp CEEE-----------------------------------------EEEETTTCSCHHHHHHHH----HH-H---HTTCCB
T ss_pred CEEE-----------------------------------------EEEecCCCccHHHHHHHH----HH-H---HcCCCE
Confidence 9999 9999987 33333322 22 2 246889
Q ss_pred EEEEEcCCCCChhh-------HHHHHHHh----CCcEEEEeccchHHHHHHhhhhc
Q psy2970 167 LVLGNKRDLPNALD-------EKELIDRI----MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 167 iLVgNK~Dl~~~~e-------~~~l~~~~----~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
++|+||+|+.++.+ ..++.++. +.+++++||+++.+.+++++.+.
T Consensus 129 IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~ 184 (482)
T 1wb1_A 129 IVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLII 184 (482)
T ss_dssp CEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHH
T ss_pred EEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHH
Confidence 99999999987522 33444444 57899999999777777766553
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-16 Score=157.62 Aligned_cols=146 Identities=18% Similarity=0.161 Sum_probs=98.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCC---CCCCCceeeeEEEeeCceEEEEEEecCC--------CccccchHHHHhh
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFS---QDMIPTVGFNMRKITKGNVTIKVWDIGG--------QPRFRSMWERYCR 87 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~---~~~~pTig~~~~~i~~~~~~l~I~DtpG--------~e~~~~~~~~~~~ 87 (329)
+..+|+++|.+|||||||+|+|.++++. .....|....+..++..+..+.+||||| ++.++.+...+++
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 101 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 101 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHh
Confidence 3569999999999999999999987653 1112222233445666677899999999 6677778888999
Q ss_pred ccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEE
Q psy2970 88 GVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPIL 167 (329)
Q Consensus 88 ~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIi 167 (329)
++|+++ +|+|..+. +.....++.+++.. .++|++
T Consensus 102 ~ad~il-----------------------------------------~VvD~~~~--~~~~d~~l~~~l~~---~~~pvi 135 (456)
T 4dcu_A 102 EADVII-----------------------------------------FMVNGREG--VTAADEEVAKILYR---TKKPVV 135 (456)
T ss_dssp HCSEEE-----------------------------------------EEEESSSC--SCHHHHHHHHHHTT---CCSCEE
T ss_pred hCCEEE-----------------------------------------EEEeCCCC--CChHHHHHHHHHHH---cCCCEE
Confidence 999999 99998763 33444556666554 578999
Q ss_pred EEEEcCCCCChhh-HHHHHHHhCC-cEEEEeccchHHHHHHhhhhc
Q psy2970 168 VLGNKRDLPNALD-EKELIDRIMI-DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 168 LVgNK~Dl~~~~e-~~~l~~~~~~-~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+||+|+.+..+ ..++. .++. ..+++||+++.+.+++++.+.
T Consensus 136 lV~NK~D~~~~~~~~~e~~-~lg~~~~~~iSA~~g~gv~~L~~~i~ 180 (456)
T 4dcu_A 136 LAVNKLDNTEMRANIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVA 180 (456)
T ss_dssp EEEECC---------CCSG-GGSSSSEEECCTTTCTTHHHHHHHHH
T ss_pred EEEECccchhhhhhHHHHH-HcCCCceEEeecccccchHHHHHHHH
Confidence 9999999875422 11221 2333 467999999777777776654
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-15 Score=148.46 Aligned_cols=149 Identities=21% Similarity=0.208 Sum_probs=97.2
Q ss_pred ceE-EEEEcCCCCCHHHHHHHHHcCCCC--CCCCCceeeeEEEeeCceEEEEEEecCCCcc---------ccchHHHHhh
Q psy2970 20 EME-LTLVGLQCSGKTTFVNVIASGQFS--QDMIPTVGFNMRKITKGNVTIKVWDIGGQPR---------FRSMWERYCR 87 (329)
Q Consensus 20 ~lk-IlllG~~gvGKSSLin~l~~~~~~--~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~---------~~~~~~~~~~ 87 (329)
.++ |+++|++|||||||+|++.+..+. ....+|.+.....+...+..+.+|||+|..+ ++..+. .+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~ 256 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAK 256 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHH
Confidence 466 999999999999999999988763 2234455444455555557889999999732 222222 467
Q ss_pred ccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc--cHHHHHHHHHHHHhCCcCCCCc
Q psy2970 88 GVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD--KLEASRNELHALIEKPQLIGIP 165 (329)
Q Consensus 88 ~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~--S~~~~~~~l~~i~~~~~~~~iP 165 (329)
.+|.++ +|+|++++. ..+....+ .++++.....+.|
T Consensus 257 ~aD~il-----------------------------------------~VvD~s~~~~~~~~~~~~~-~~~L~~l~~~~~p 294 (364)
T 2qtf_A 257 YSDALI-----------------------------------------LVIDSTFSENLLIETLQSS-FEILREIGVSGKP 294 (364)
T ss_dssp GSSEEE-----------------------------------------EEEETTSCHHHHHHHHHHH-HHHHHHHTCCSCC
T ss_pred hCCEEE-----------------------------------------EEEECCCCcchHHHHHHHH-HHHHHHhCcCCCC
Confidence 788888 999999876 44443333 2333322235789
Q ss_pred EEEEEEcCCCCChh------hHHHHHHHh-C--CcEEEEeccchHHHHHHhhhhc
Q psy2970 166 ILVLGNKRDLPNAL------DEKELIDRI-M--IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 166 IiLVgNK~Dl~~~~------e~~~l~~~~-~--~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+++|+||+|+.+.. .+..+++.+ . .+++++||++..+.+.+++.+.
T Consensus 295 ~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~ 349 (364)
T 2qtf_A 295 ILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIY 349 (364)
T ss_dssp EEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHH
T ss_pred EEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHH
Confidence 99999999997642 122344666 2 3689999999888888776654
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-15 Score=152.76 Aligned_cols=126 Identities=17% Similarity=0.112 Sum_probs=93.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC------------------CCCC------CCCCceeeeEEEeeCceEEEEEEecCC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG------------------QFSQ------DMIPTVGFNMRKITKGNVTIKVWDIGG 74 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~------------------~~~~------~~~pTig~~~~~i~~~~~~l~I~DtpG 74 (329)
+..+|+++|.+|+|||||+++|+.. .+.. ....|+......+..++..+.+|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 4679999999999999999999621 0100 112344444555677789999999999
Q ss_pred CccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHH
Q psy2970 75 QPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHA 154 (329)
Q Consensus 75 ~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~ 154 (329)
+++|......+++.+|+++ +|+|+++..+.+....| ..
T Consensus 92 ~~df~~~~~~~l~~aD~al-----------------------------------------lVvDa~~g~~~~t~~~~-~~ 129 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSAL-----------------------------------------MVIDAAKGVEPRTIKLM-EV 129 (528)
T ss_dssp STTCCHHHHHGGGGCSEEE-----------------------------------------EEEETTTCSCHHHHHHH-HH
T ss_pred chhHHHHHHHHHHhCCEEE-----------------------------------------EEEeCCCCCCHHHHHHH-HH
Confidence 9999999999999999999 99999987665554433 33
Q ss_pred HHhCCcCCCCcEEEEEEcCCCCCh---hhHHHHHHHhCC
Q psy2970 155 LIEKPQLIGIPILVLGNKRDLPNA---LDEKELIDRIMI 190 (329)
Q Consensus 155 i~~~~~~~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~~ 190 (329)
+.. .++|+++|+||+|+... ...+++.+.++.
T Consensus 130 ~~~----~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~~ 164 (528)
T 3tr5_A 130 CRL----RHTPIMTFINKMDRDTRPSIELLDEIESILRI 164 (528)
T ss_dssp HHT----TTCCEEEEEECTTSCCSCHHHHHHHHHHHHCC
T ss_pred HHH----cCCCEEEEEeCCCCccccHHHHHHHHHHhhCC
Confidence 322 47899999999999764 234555555543
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.4e-16 Score=150.97 Aligned_cols=150 Identities=16% Similarity=0.120 Sum_probs=85.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCC-CCCC--------CCceeeeEEEe----eCceEEEEEEecCCC-------cc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQF-SQDM--------IPTVGFNMRKI----TKGNVTIKVWDIGGQ-------PR 77 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~-~~~~--------~pTig~~~~~i----~~~~~~l~I~DtpG~-------e~ 77 (329)
...++|+++|++|+|||||++++++... ...+ .+|++.....+ ++..+.+.+|||||+ +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 4568999999999999999999876543 2222 25666655432 233568999999999 77
Q ss_pred ccchHH-------HHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCC-cccHHHHH
Q psy2970 78 FRSMWE-------RYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAAD-TDKLEASR 149 (329)
Q Consensus 78 ~~~~~~-------~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~-~~S~~~~~ 149 (329)
+..++. .+++++++++ +. .+...+ .++ ++|++++ ..++....
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~-------------r~---~~~d~r------------v~~--~vy~I~~~~~~l~~~d 164 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLN-------------RR---HIIDNR------------VHC--CFYFISPFGHGLKPLD 164 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSC-------------CC----CCCCC------------CCE--EEEEECSSSSSCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhc-------------cc---cccCCc------------eEE--EEEEEecCCCCcchhH
Confidence 777776 7888777765 00 001111 122 4555544 44555555
Q ss_pred H-HHHHHHhCCcCCCCcEEEEEEcCCCCChh-------hHHHHHHHhCCcEEEEeccchHH
Q psy2970 150 N-ELHALIEKPQLIGIPILVLGNKRDLPNAL-------DEKELIDRIMIDFWITLTLLIRW 202 (329)
Q Consensus 150 ~-~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~-------e~~~l~~~~~~~~~etSAk~~~~ 202 (329)
. ++..+ ..++|+++|+||+|+.... ++.+++++.+++++++||+++..
T Consensus 165 ~~~~~~l-----~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~ 220 (361)
T 2qag_A 165 VAFMKAI-----HNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE 220 (361)
T ss_dssp HHHHHHT-----CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC------
T ss_pred HHHHHHh-----ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc
Confidence 3 33333 2578999999999998764 33445556688999999998654
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.5e-15 Score=154.10 Aligned_cols=146 Identities=18% Similarity=0.144 Sum_probs=104.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCC--CC-----CCC----------CCceeeeEEEe-----eCceEEEEEEecCCCc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQ--FS-----QDM----------IPTVGFNMRKI-----TKGNVTIKVWDIGGQP 76 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~--~~-----~~~----------~pTig~~~~~i-----~~~~~~l~I~DtpG~e 76 (329)
+-.+|+++|..++|||||+++|.... +. ..+ ..|+......+ +++.+.+++|||||++
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 34689999999999999999997521 11 000 11222111222 3446899999999999
Q ss_pred cccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHH
Q psy2970 77 RFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALI 156 (329)
Q Consensus 77 ~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~ 156 (329)
+|......+++.+|+++ +|+|+++..+++....|.....
T Consensus 83 dF~~ev~~~l~~aD~aI-----------------------------------------LVVDa~~gv~~qt~~~~~~~~~ 121 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGAL-----------------------------------------LVVDAGQGVEAQTLANCYTAME 121 (599)
T ss_dssp GGHHHHHHHHHHCSEEE-----------------------------------------EEEETTTCCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCEEE-----------------------------------------EEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999 9999998877777666655442
Q ss_pred hCCcCCCCcEEEEEEcCCCCCh---hhHHHHHHHhCCc---EEEEeccchHHHHHHhhhh
Q psy2970 157 EKPQLIGIPILVLGNKRDLPNA---LDEKELIDRIMID---FWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 157 ~~~~~~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~~~---~~etSAk~~~~~~~~l~~i 210 (329)
.++|+++|+||+|+.++ ...+++.+.++++ ++++||+++.+.+.+++.+
T Consensus 122 -----~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I 176 (599)
T 3cb4_D 122 -----MDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERL 176 (599)
T ss_dssp -----TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHH
T ss_pred -----CCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHH
Confidence 46899999999999874 3356778888874 9999999977777777655
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.5e-15 Score=152.66 Aligned_cols=146 Identities=16% Similarity=0.158 Sum_probs=105.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC--CCC-----CC----------CCCceeeeEEEe-----eCceEEEEEEecCCCc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG--QFS-----QD----------MIPTVGFNMRKI-----TKGNVTIKVWDIGGQP 76 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~--~~~-----~~----------~~pTig~~~~~i-----~~~~~~l~I~DtpG~e 76 (329)
+-.+|+++|..++|||||+++|+.. .+. .. ...|+......+ +++.+.+++|||||++
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 4569999999999999999999752 111 00 011221111111 3456899999999999
Q ss_pred cccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHH
Q psy2970 77 RFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALI 156 (329)
Q Consensus 77 ~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~ 156 (329)
+|......+++.+|+++ +|+|+++..+.+....|....
T Consensus 85 dF~~ev~r~l~~aD~aI-----------------------------------------LVVDa~~gv~~qt~~~~~~a~- 122 (600)
T 2ywe_A 85 DFSYEVSRALAACEGAL-----------------------------------------LLIDASQGIEAQTVANFWKAV- 122 (600)
T ss_dssp GGHHHHHHHHHTCSEEE-----------------------------------------EEEETTTBCCHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHhCCEEE-----------------------------------------EEEECCCCccHHHHHHHHHHH-
Confidence 99988888999999999 999999987777776665544
Q ss_pred hCCcCCCCcEEEEEEcCCCCCh---hhHHHHHHHhCC---cEEEEeccchHHHHHHhhhh
Q psy2970 157 EKPQLIGIPILVLGNKRDLPNA---LDEKELIDRIMI---DFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 157 ~~~~~~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~~---~~~etSAk~~~~~~~~l~~i 210 (329)
..++|+++|+||+|+.+. ...+++.+.+++ +++++||+++.+.+.+++.+
T Consensus 123 ----~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I 178 (600)
T 2ywe_A 123 ----EQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAI 178 (600)
T ss_dssp ----HTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHH
T ss_pred ----HCCCCEEEEEeccCccccCHHHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHH
Confidence 247899999999999865 235667777777 49999999977777777654
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.59 E-value=6.2e-16 Score=154.69 Aligned_cols=147 Identities=17% Similarity=0.184 Sum_probs=90.3
Q ss_pred HhcCCCCceEEEEEcCCCCCHHHHHHHHHc--CCCC-------------------------------CCCCCceeeeEEE
Q psy2970 13 KSLFWKEEMELTLVGLQCSGKTTFVNVIAS--GQFS-------------------------------QDMIPTVGFNMRK 59 (329)
Q Consensus 13 ~~~~~~k~lkIlllG~~gvGKSSLin~l~~--~~~~-------------------------------~~~~pTig~~~~~ 59 (329)
+..+.+..++|+++|..++|||||+++|+. +.+. .....|++..+..
T Consensus 36 ~~~~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~ 115 (467)
T 1r5b_A 36 KDMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAY 115 (467)
T ss_dssp HHHSCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCE
T ss_pred HhhcCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEE
Confidence 344556789999999999999999999964 2211 0124566665556
Q ss_pred eeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEEC
Q psy2970 60 ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDA 139 (329)
Q Consensus 60 i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dv 139 (329)
+..++..+.||||||+++|.......+..+|+++ +|+|+
T Consensus 116 ~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~i-----------------------------------------lVvDa 154 (467)
T 1r5b_A 116 FETEHRRFSLLDAPGHKGYVTNMINGASQADIGV-----------------------------------------LVISA 154 (467)
T ss_dssp EECSSEEEEECCCCC-----------TTSCSEEE-----------------------------------------EEEEC
T ss_pred EecCCeEEEEEECCCcHHHHHHHHhhcccCCEEE-----------------------------------------EEEeC
Confidence 6667789999999999999888888889999999 99999
Q ss_pred CCc---ccHHH---HHHHHHHHHhCCcCCCCc-EEEEEEcCCCCC----h-------hhHHHHHHHh-C------CcEEE
Q psy2970 140 ADT---DKLEA---SRNELHALIEKPQLIGIP-ILVLGNKRDLPN----A-------LDEKELIDRI-M------IDFWI 194 (329)
Q Consensus 140 t~~---~S~~~---~~~~l~~i~~~~~~~~iP-IiLVgNK~Dl~~----~-------~e~~~l~~~~-~------~~~~e 194 (329)
++. .+|+. ..+.+.... ..++| ++||+||+|+.+ + .+..++.+++ + +++++
T Consensus 155 ~~g~~e~sf~~~~qt~e~l~~~~----~~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~ 230 (467)
T 1r5b_A 155 RRGEFEAGFERGGQTREHAVLAR----TQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMP 230 (467)
T ss_dssp STTHHHHTTSTTCCHHHHHHHHH----HTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEE
T ss_pred CcCccccccCCCCcHHHHHHHHH----HcCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEe
Confidence 875 23321 222222221 24677 999999999964 1 1355666666 3 56999
Q ss_pred EeccchHHHH
Q psy2970 195 TLTLLIRWCE 204 (329)
Q Consensus 195 tSAk~~~~~~ 204 (329)
+||+++.+.+
T Consensus 231 vSA~~g~~i~ 240 (467)
T 1r5b_A 231 VSAYTGQNVK 240 (467)
T ss_dssp CBTTTTBTTS
T ss_pred cccccccccc
Confidence 9999955544
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-15 Score=156.81 Aligned_cols=142 Identities=13% Similarity=0.098 Sum_probs=100.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC--C-------------------------------CCCCceeeeEEEeeCce
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS--Q-------------------------------DMIPTVGFNMRKITKGN 64 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~--~-------------------------------~~~pTig~~~~~i~~~~ 64 (329)
+..++|+++|.+|+|||||+++|+..... . ....|+...+..++...
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 56799999999999999999999865321 0 01234445555677778
Q ss_pred EEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc-
Q psy2970 65 VTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD- 143 (329)
Q Consensus 65 ~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~- 143 (329)
..+.||||||+++|......+++.+|+++ +|+|+++..
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~l-----------------------------------------lVVDa~~g~~ 283 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAI-----------------------------------------LCVDCSTNAF 283 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEE-----------------------------------------EEEECSHHHH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceE-----------------------------------------EEEECCCCcc
Confidence 89999999999999888888899999999 999998631
Q ss_pred --cH---HHHHHHHHHHHhCCcCCC-CcEEEEEEcCCCCCh---------hhHHHHHHHhC-----CcEEEEeccchHHH
Q psy2970 144 --KL---EASRNELHALIEKPQLIG-IPILVLGNKRDLPNA---------LDEKELIDRIM-----IDFWITLTLLIRWC 203 (329)
Q Consensus 144 --S~---~~~~~~l~~i~~~~~~~~-iPIiLVgNK~Dl~~~---------~e~~~l~~~~~-----~~~~etSAk~~~~~ 203 (329)
+| ......+. +... .+ .|++||+||+|+.+. .+..++.++++ ++++++||+++.++
T Consensus 284 e~~~~~~~qt~e~l~-~~~~---lgi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI 359 (611)
T 3izq_1 284 ESGFDLDGQTKEHML-LASS---LGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGV 359 (611)
T ss_dssp HTTCCTTSHHHHHHH-HHHT---TTCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTT
T ss_pred cccchhhhHHHHHHH-HHHH---cCCCeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCc
Confidence 11 11222222 2222 33 459999999999872 22334445554 58999999996554
Q ss_pred H
Q psy2970 204 E 204 (329)
Q Consensus 204 ~ 204 (329)
+
T Consensus 360 ~ 360 (611)
T 3izq_1 360 Y 360 (611)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-14 Score=133.88 Aligned_cols=120 Identities=12% Similarity=0.109 Sum_probs=79.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCce-eeeEEEeeCceEEEEEEecCCCccccchHHH-------H--
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTV-GFNMRKITKGNVTIKVWDIGGQPRFRSMWER-------Y-- 85 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~--~~~~pTi-g~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~-------~-- 85 (329)
.+.++|+++|.+|||||||+|++++..+. ..+.+++ ......++.++..+.+|||||++++...... +
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 35799999999999999999999988763 2222222 2223345667789999999999876543221 1
Q ss_pred hhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHH-HHHHHHHHhCCc-CCC
Q psy2970 86 CRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEAS-RNELHALIEKPQ-LIG 163 (329)
Q Consensus 86 ~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~-~~~l~~i~~~~~-~~~ 163 (329)
.+.+|+++ +|+|++.. ++... ..++..+.+... ...
T Consensus 117 ~~~~d~il-----------------------------------------~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~ 154 (270)
T 1h65_A 117 DKTIDVLL-----------------------------------------YVDRLDAY-RVDNLDKLVAKAITDSFGKGIW 154 (270)
T ss_dssp TCEECEEE-----------------------------------------EEEESSCC-CCCHHHHHHHHHHHHHHCGGGG
T ss_pred cCCCCEEE-----------------------------------------EEEeCCCC-cCCHHHHHHHHHHHHHhCcccc
Confidence 22567777 99998654 34332 355555543211 122
Q ss_pred CcEEEEEEcCCCCChh
Q psy2970 164 IPILVLGNKRDLPNAL 179 (329)
Q Consensus 164 iPIiLVgNK~Dl~~~~ 179 (329)
.|+++|+||+|+...+
T Consensus 155 ~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 155 NKAIVALTHAQFSPPD 170 (270)
T ss_dssp GGEEEEEECCSCCCGG
T ss_pred cCEEEEEECcccCCcC
Confidence 6999999999997653
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.59 E-value=4.1e-15 Score=148.44 Aligned_cols=142 Identities=14% Similarity=0.164 Sum_probs=103.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC--CCCC-------------------------------CCCCceeeeEEEeeCce
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG--QFSQ-------------------------------DMIPTVGFNMRKITKGN 64 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~--~~~~-------------------------------~~~pTig~~~~~i~~~~ 64 (329)
+..++|+++|.+|+|||||+++|+.. .+.. ....|+...+..++.+.
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 45799999999999999999999863 2211 12356666666777888
Q ss_pred EEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc-
Q psy2970 65 VTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD- 143 (329)
Q Consensus 65 ~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~- 143 (329)
..+.+|||||+++|......++..+|+++ +|+|+++..
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~i-----------------------------------------lVvda~~g~~ 123 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAI-----------------------------------------LIIAGGVGEF 123 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEE-----------------------------------------EEEECSHHHH
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEE-----------------------------------------EEEeCCcCcc
Confidence 89999999999999888888899999999 999998642
Q ss_pred --cHH---HHHHHHHHHHhCCcCCCCc-EEEEEEcCCCCC--h-------hhHHHHHHHhC-----CcEEEEeccchHHH
Q psy2970 144 --KLE---ASRNELHALIEKPQLIGIP-ILVLGNKRDLPN--A-------LDEKELIDRIM-----IDFWITLTLLIRWC 203 (329)
Q Consensus 144 --S~~---~~~~~l~~i~~~~~~~~iP-IiLVgNK~Dl~~--~-------~e~~~l~~~~~-----~~~~etSAk~~~~~ 203 (329)
+|+ ...+.+..+. ..++| +++|+||+|+.+ + .+..++.+.++ ++++++||+++.+.
T Consensus 124 ~~sf~~~~qt~~~~~~~~----~~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv 199 (458)
T 1f60_A 124 EAGISKDGQTREHALLAF----TLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNM 199 (458)
T ss_dssp HHHTCTTSHHHHHHHHHH----HTTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTT
T ss_pred ccccCcchhHHHHHHHHH----HcCCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCc
Confidence 221 2223222221 23565 999999999973 2 13445556665 68999999995554
Q ss_pred H
Q psy2970 204 E 204 (329)
Q Consensus 204 ~ 204 (329)
+
T Consensus 200 ~ 200 (458)
T 1f60_A 200 I 200 (458)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.3e-15 Score=144.13 Aligned_cols=136 Identities=10% Similarity=0.054 Sum_probs=102.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeee
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIV 101 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~ 101 (329)
+|+++|.+++|||||+++|. ....|++..+..++.++..+.+|||||+++|.......++.+|+++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ai-------- 88 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAV-------- 88 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEE--------
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEE--------
Confidence 89999999999999999998 3456667777777777788999999999999777777889999999
Q ss_pred hhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcE-EEEEE-cCCCCChh
Q psy2970 102 SKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPI-LVLGN-KRDLPNAL 179 (329)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPI-iLVgN-K~Dl~~~~ 179 (329)
+|+| + ...+....+++..+.. .++|. ++++| |+|+ ++.
T Consensus 89 ---------------------------------lVvd-~-~g~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~ 128 (370)
T 2elf_A 89 ---------------------------------LCIP-P-QGLDAHTGECIIALDL----LGFKHGIIALTRSDST-HMH 128 (370)
T ss_dssp ---------------------------------EEEC-T-TCCCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHH
T ss_pred ---------------------------------EEEc-C-CCCcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHH
Confidence 9999 4 3445555555554432 45777 88999 9999 643
Q ss_pred h-------HHHHHHHhC---CcEEE--Eeccc---hHHHHHHhhhhc
Q psy2970 180 D-------EKELIDRIM---IDFWI--TLTLL---IRWCESFLHHFG 211 (329)
Q Consensus 180 e-------~~~l~~~~~---~~~~e--tSAk~---~~~~~~~l~~i~ 211 (329)
. .+++.++++ +++++ +||++ ..+.+++++.+.
T Consensus 129 ~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~ 175 (370)
T 2elf_A 129 AIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARIN 175 (370)
T ss_dssp HHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHH
Confidence 2 222222222 68999 99999 877777766553
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.58 E-value=9.1e-17 Score=164.04 Aligned_cols=147 Identities=18% Similarity=0.156 Sum_probs=105.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--EeeC-ceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--KITK-GNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~i~~-~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
++..+|+++|.+|+|||||+++|.+..+.....++++..+. .+.. ++..+.+|||||+++|..++..+++.+|+++
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vI- 80 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVI- 80 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCE-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEE-
Confidence 46789999999999999999999987665444555544332 2322 3457899999999999999888999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|+|+++....+. ...+..+. ..++|+++|+||+|
T Consensus 81 ----------------------------------------LVVDa~dg~~~qt-~e~l~~~~----~~~vPiIVViNKiD 115 (537)
T 3izy_P 81 ----------------------------------------LVVAADDGVMKQT-VESIQHAK----DAHVPIVLAINKCD 115 (537)
T ss_dssp ----------------------------------------EECBSSSCCCHHH-HHHHHHHH----TTTCCEEECCBSGG
T ss_pred ----------------------------------------EEEECCCCccHHH-HHHHHHHH----HcCCcEEEEEeccc
Confidence 9999998654433 33333332 25789999999999
Q ss_pred CCChh--h-HHHHHH------Hh--CCcEEEEeccchHHHHHHhhhh
Q psy2970 175 LPNAL--D-EKELID------RI--MIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 175 l~~~~--e-~~~l~~------~~--~~~~~etSAk~~~~~~~~l~~i 210 (329)
+++.. + .+++.+ .+ .++++++||+++.+.+++++.+
T Consensus 116 l~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I 162 (537)
T 3izy_P 116 KAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEAT 162 (537)
T ss_dssp GTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHH
T ss_pred ccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHH
Confidence 97541 1 111211 12 2479999999977777766554
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=9.5e-15 Score=150.71 Aligned_cols=144 Identities=17% Similarity=0.184 Sum_probs=101.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCC----CCCCceeeeEEEee----------------CceEEEEEEecCCCccc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQ----DMIPTVGFNMRKIT----------------KGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~----~~~pTig~~~~~i~----------------~~~~~l~I~DtpG~e~~ 78 (329)
+..+|+++|.+|+|||||++++.+..+.. ...++++..+...+ .+...+.+|||||+++|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 56899999999999999999998754432 22345555444311 11235899999999999
Q ss_pred cchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCC---cccHHHHHHHHHHH
Q psy2970 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAAD---TDKLEASRNELHAL 155 (329)
Q Consensus 79 ~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~---~~S~~~~~~~l~~i 155 (329)
..++..+++.+|+++ +|+|+++ +.+++.+.. +
T Consensus 84 ~~~~~r~~~~aD~aI-----------------------------------------LVvDa~~Gv~~qT~e~l~~----l 118 (594)
T 1g7s_A 84 TTLRKRGGALADLAI-----------------------------------------LIVDINEGFKPQTQEALNI----L 118 (594)
T ss_dssp TTSBCSSSBSCSEEE-----------------------------------------EEEETTTCCCHHHHHHHHH----H
T ss_pred HHHHHHHHhhCCEEE-----------------------------------------EEEECCCCccHhHHHHHHH----H
Confidence 998888888999999 9999998 555554432 2
Q ss_pred HhCCcCCCCcEEEEEEcCCCCChh-----------------h--------HHHHHHHh---C---------------CcE
Q psy2970 156 IEKPQLIGIPILVLGNKRDLPNAL-----------------D--------EKELIDRI---M---------------IDF 192 (329)
Q Consensus 156 ~~~~~~~~iPIiLVgNK~Dl~~~~-----------------e--------~~~l~~~~---~---------------~~~ 192 (329)
. ..++|+++|+||+|+.... + ..++.+++ + .++
T Consensus 119 ~----~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpv 194 (594)
T 1g7s_A 119 R----MYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSI 194 (594)
T ss_dssp H----HTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEE
T ss_pred H----HcCCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceE
Confidence 1 2578999999999996420 0 01111111 2 379
Q ss_pred EEEeccchHHHHHHhhhhc
Q psy2970 193 WITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 193 ~etSAk~~~~~~~~l~~i~ 211 (329)
+++||+++.+.+.+++.+.
T Consensus 195 v~vSA~tG~GI~eLl~~I~ 213 (594)
T 1g7s_A 195 IPISAITGEGIPELLTMLM 213 (594)
T ss_dssp EECCTTTCTTHHHHHHHHH
T ss_pred EEEeccCCCCchhHHHHHH
Confidence 9999999888888776654
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-14 Score=126.33 Aligned_cols=148 Identities=14% Similarity=0.128 Sum_probs=88.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE--EeeCceEEEEEEecCCCcc----------ccchHHH
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR--KITKGNVTIKVWDIGGQPR----------FRSMWER 84 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~--~i~~~~~~l~I~DtpG~e~----------~~~~~~~ 84 (329)
-.+..+|+++|++|||||||+|++.+..+...+.|+.|.... .+..++ .+.+|||||... ++.....
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 456789999999999999999999987754334455553321 111111 577999999753 1222223
Q ss_pred Hh---hccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcC
Q psy2970 85 YC---RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQL 161 (329)
Q Consensus 85 ~~---~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~ 161 (329)
++ +.+++++ +++|++++.++... .+.+.+. .
T Consensus 102 ~~~~~~~~~~~~-----------------------------------------~v~d~~~~~~~~~~--~~~~~~~---~ 135 (210)
T 1pui_A 102 YLEKRQSLQGLV-----------------------------------------VLMDIRHPLKDLDQ--QMIEWAV---D 135 (210)
T ss_dssp HHHHCTTEEEEE-----------------------------------------EEEETTSCCCHHHH--HHHHHHH---H
T ss_pred HHHhhhcccEEE-----------------------------------------EEEECCCCCchhHH--HHHHHHH---H
Confidence 33 3456666 99999987654321 1222222 2
Q ss_pred CCCcEEEEEEcCCCCChh-------hHHHHHHHhC--CcEEEEeccchHHHHHHhhhhc
Q psy2970 162 IGIPILVLGNKRDLPNAL-------DEKELIDRIM--IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 162 ~~iPIiLVgNK~Dl~~~~-------e~~~l~~~~~--~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.++|+++|+||+|+.+.. .+.+++.+.+ +.++++||++....+++++.+.
T Consensus 136 ~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~ 194 (210)
T 1pui_A 136 SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLD 194 (210)
T ss_dssp TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHH
T ss_pred cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHH
Confidence 468999999999987642 2233334443 5688999999777777776553
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.8e-14 Score=133.13 Aligned_cols=153 Identities=21% Similarity=0.244 Sum_probs=95.2
Q ss_pred hHHHHHHHHHHHhcC--CCCceEEEEEcCCCCCHHHHHHHHHcCCCC-CCC-----CCceeeeEEE--------------
Q psy2970 2 FVLLNRILDWFKSLF--WKEEMELTLVGLQCSGKTTFVNVIASGQFS-QDM-----IPTVGFNMRK-------------- 59 (329)
Q Consensus 2 ~~~~~~~~~~~~~~~--~~k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~-----~pTig~~~~~-------------- 59 (329)
..+++++-+.++.+- .....+|+++|.+|||||||+|++++.++. ... .|+.-...+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~ 83 (315)
T 1jwy_B 4 IPVINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGE 83 (315)
T ss_dssp HHHHHHHHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEE
T ss_pred HHHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhh
Confidence 356677777665443 234579999999999999999999998762 111 1211000000
Q ss_pred ------------------------------------------eeCceEEEEEEecCCCcc-------------ccchHHH
Q psy2970 60 ------------------------------------------ITKGNVTIKVWDIGGQPR-------------FRSMWER 84 (329)
Q Consensus 60 ------------------------------------------i~~~~~~l~I~DtpG~e~-------------~~~~~~~ 84 (329)
.......+.+|||||..+ +......
T Consensus 84 ~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~ 163 (315)
T 1jwy_B 84 FLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMA 163 (315)
T ss_dssp ESSSTTCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHH
T ss_pred hhcccccccCCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHH
Confidence 111335689999999754 3455677
Q ss_pred HhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccH-HHHHHHHHHHHhCCcCCC
Q psy2970 85 YCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKL-EASRNELHALIEKPQLIG 163 (329)
Q Consensus 85 ~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~-~~~~~~l~~i~~~~~~~~ 163 (329)
+++++|+++ +|+|.++.... .....+...+ . ..+
T Consensus 164 ~~~~~d~ii-----------------------------------------lvvd~~~~~~~~~~~~~i~~~~-~---~~~ 198 (315)
T 1jwy_B 164 YIKKQNAII-----------------------------------------VAVTPANTDLANSDALQLAKEV-D---PEG 198 (315)
T ss_dssp HHHSTTEEE-----------------------------------------EEEEESSSCSTTCSHHHHHHHH-C---SSC
T ss_pred HHcCCCeEE-----------------------------------------EEEEecCcchhhhHHHHHHHHh-C---CCC
Confidence 888999999 99997543211 1111222222 2 257
Q ss_pred CcEEEEEEcCCCCChhh-HHHHHHH----hCCcEEEEeccc
Q psy2970 164 IPILVLGNKRDLPNALD-EKELIDR----IMIDFWITLTLL 199 (329)
Q Consensus 164 iPIiLVgNK~Dl~~~~e-~~~l~~~----~~~~~~etSAk~ 199 (329)
.|+++|+||+|+.+..+ ..+..+. ++.+++++|+.+
T Consensus 199 ~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s 239 (315)
T 1jwy_B 199 KRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRS 239 (315)
T ss_dssp SSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCC
T ss_pred CcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCC
Confidence 89999999999976533 2333332 236789998887
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.1e-16 Score=156.76 Aligned_cols=145 Identities=21% Similarity=0.208 Sum_probs=103.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcee--eeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG--FNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig--~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
++..+|+++|.+++|||||+++|.+..+.....+++. .....+..++..+.+|||||+++|..++...+..+|+++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aI-- 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVV-- 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEE--
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEE--
Confidence 4678999999999999999999987655433323222 222334445567899999999999988888888899999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc---ccHHHHHHHHHHHHhCCcCCCCcEEEEEEc
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT---DKLEASRNELHALIEKPQLIGIPILVLGNK 172 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~---~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK 172 (329)
+|+|+++. .+.+.+ ..+. ..++|+++++||
T Consensus 80 ---------------------------------------LVVda~~g~~~qT~e~l----~~~~----~~~vPiIVviNK 112 (501)
T 1zo1_I 80 ---------------------------------------LVVAADDGVMPQTIEAI----QHAK----AAQVPVVVAVNK 112 (501)
T ss_dssp ---------------------------------------EEEETTTBSCTTTHHHH----HHHH----HTTCCEEEEEEC
T ss_pred ---------------------------------------EEeecccCccHHHHHHH----HHHH----hcCceEEEEEEe
Confidence 99999873 333332 2221 257899999999
Q ss_pred CCCCChh--hH-------HHHHHHhC--CcEEEEeccchHHHHHHhhhhc
Q psy2970 173 RDLPNAL--DE-------KELIDRIM--IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 173 ~Dl~~~~--e~-------~~l~~~~~--~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+++.. +. ..++++++ ++++++||+++.+.+++++.+.
T Consensus 113 iDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~ 162 (501)
T 1zo1_I 113 IDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAIL 162 (501)
T ss_dssp SSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTT
T ss_pred ccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhh
Confidence 9997531 11 11122333 6899999999777777777664
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.9e-15 Score=140.60 Aligned_cols=130 Identities=14% Similarity=0.032 Sum_probs=108.6
Q ss_pred HHHHHHHcCCCC-CCCCCceeeeEEE-eeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccc
Q psy2970 35 TFVNVIASGQFS-QDMIPTVGFNMRK-ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILY 112 (329)
Q Consensus 35 SLin~l~~~~~~-~~~~pTig~~~~~-i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~ 112 (329)
+|+.++..+.|. ..+.||+|..+.. +..+. .+.+||| +++++.+++.+++++|+++
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vi------------------- 89 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG-SGVIENV--LHRKNLLTKPHVANVDQVI------------------- 89 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS-SEEEEEE--CCCSCEETTTTEESCCEEE-------------------
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCCC-eEEEEEE--ccccceeeccccccCCEEE-------------------
Confidence 688888889998 8899999976653 22333 7899999 9999999999999999999
Q ss_pred cCCCcCCCCchhhhhhhcceeEEEEECCCcc-cHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhh---HHHHHHHh
Q psy2970 113 YEPVDLGVSGPMWLSLLFQLIKYMVDAADTD-KLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD---EKELIDRI 188 (329)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~-S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e---~~~l~~~~ 188 (329)
+|||+++++ +++.+..|+.++.. .++|++||+||+|+.+..+ .+++++.+
T Consensus 90 ----------------------lV~D~~~~~~s~~~l~~~l~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~ 143 (301)
T 1u0l_A 90 ----------------------LVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIY 143 (301)
T ss_dssp ----------------------EEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHH
T ss_pred ----------------------EEEeCCCCCCCHHHHHHHHHHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHH
Confidence 999999997 78888888887643 4799999999999987643 67788888
Q ss_pred C--CcEEEEeccchHHHHHHhhhhcC
Q psy2970 189 M--IDFWITLTLLIRWCESFLHHFGS 212 (329)
Q Consensus 189 ~--~~~~etSAk~~~~~~~~l~~i~~ 212 (329)
+ .++++|||+++.+.++++..+..
T Consensus 144 ~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 144 SGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp TTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred hhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 8 89999999998878887766543
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.51 E-value=4.7e-14 Score=154.35 Aligned_cols=149 Identities=16% Similarity=0.157 Sum_probs=103.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcC-------CCCC-------CCCC----ceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASG-------QFSQ-------DMIP----TVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~-------~~~~-------~~~p----Tig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
.+..++|+++|.+++|||||+++|.+. .+.. ...+ |+......++.+...+.+|||||+++|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 356799999999999999999999863 1100 0112 222223345667788999999999999
Q ss_pred cchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC
Q psy2970 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK 158 (329)
Q Consensus 79 ~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~ 158 (329)
.......++.+|++| +|+|+++... ....+++..+..
T Consensus 373 ~~~mi~gas~AD~aI-----------------------------------------LVVDAtdGv~-~QTrEhL~ll~~- 409 (1289)
T 3avx_A 373 VKNMITGAAQMDGAI-----------------------------------------LVVAATDGPM-PQTREHILLGRQ- 409 (1289)
T ss_dssp HHHHHHTSCCCSEEE-----------------------------------------EEEETTTCSC-TTHHHHHHHHHH-
T ss_pred HHHHHHHHhhCCEEE-----------------------------------------EEEcCCccCc-HHHHHHHHHHHH-
Confidence 887788889999999 9999988543 233344433322
Q ss_pred CcCCCCc-EEEEEEcCCCCCh--------hhHHHHHHHhC-----CcEEEEeccch--------HHHHHHhhhhc
Q psy2970 159 PQLIGIP-ILVLGNKRDLPNA--------LDEKELIDRIM-----IDFWITLTLLI--------RWCESFLHHFG 211 (329)
Q Consensus 159 ~~~~~iP-IiLVgNK~Dl~~~--------~e~~~l~~~~~-----~~~~etSAk~~--------~~~~~~l~~i~ 211 (329)
.++| ++||+||+|+.+. .+.+++.++++ ++++++||+++ ...+.+++.+.
T Consensus 410 ---lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~ 481 (1289)
T 3avx_A 410 ---VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLD 481 (1289)
T ss_dssp ---HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHH
T ss_pred ---cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHh
Confidence 3678 7899999999852 23455666665 58999999997 34566665553
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.50 E-value=3.3e-14 Score=139.89 Aligned_cols=45 Identities=16% Similarity=0.005 Sum_probs=34.5
Q ss_pred CCcEEEEEEcCCCCChhhHHHHHHHh---CCcEEEEeccchHHHHHHh
Q psy2970 163 GIPILVLGNKRDLPNALDEKELIDRI---MIDFWITLTLLIRWCESFL 207 (329)
Q Consensus 163 ~iPIiLVgNK~Dl~~~~e~~~l~~~~---~~~~~etSAk~~~~~~~~l 207 (329)
.+|+++|+||+|+......+++.+.+ +.+++.+||+.+.....++
T Consensus 214 ~kP~i~v~NK~D~~~~~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~ 261 (397)
T 1wxq_A 214 NKPMVIAANKADAASDEQIKRLVREEEKRGYIVIPTSAAAELTLRKAA 261 (397)
T ss_dssp HSCEEEEEECGGGSCHHHHHHHHHHHHHTTCEEEEECHHHHHHHHSCS
T ss_pred CCCEEEEEeCccccchHHHHHHHHHHhhcCCcEEEEeccchhhHHHHH
Confidence 48999999999998554455555554 6789999999977766543
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=5.1e-14 Score=135.37 Aligned_cols=138 Identities=17% Similarity=0.159 Sum_probs=91.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcee-----eeEE----------E--------------------------
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG-----FNMR----------K-------------------------- 59 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig-----~~~~----------~-------------------------- 59 (329)
.+|+|+|++|||||||+|++.+.++.+....++. ..+. .
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 4999999999999999999999877322211111 0000 0
Q ss_pred ----------------eeCceEEEEEEecCCCccc-------------cchHHHHhhccceeEeecceeeehhccccccc
Q psy2970 60 ----------------ITKGNVTIKVWDIGGQPRF-------------RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAI 110 (329)
Q Consensus 60 ----------------i~~~~~~l~I~DtpG~e~~-------------~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~ 110 (329)
.......+.+|||||..++ ..+...+++++|+++
T Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~ii----------------- 177 (360)
T 3t34_A 115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCII----------------- 177 (360)
T ss_dssp SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEE-----------------
T ss_pred cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEE-----------------
Confidence 0112345889999998876 556678889999999
Q ss_pred cccCCCcCCCCchhhhhhhcceeEEEEECCCcccH-HHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChh-h----HHHH
Q psy2970 111 LYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKL-EASRNELHALIEKPQLIGIPILVLGNKRDLPNAL-D----EKEL 184 (329)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~-~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~-e----~~~l 184 (329)
+|+|.++.+.. .....++..+ ...+.|+++|+||+|+.+.. . .+..
T Consensus 178 ------------------------lvv~~~~~~~~~~~~~~l~~~~----~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~ 229 (360)
T 3t34_A 178 ------------------------LAISPANQDLATSDAIKISREV----DPSGDRTFGVLTKIDLMDKGTDAVEILEGR 229 (360)
T ss_dssp ------------------------EEEEETTSCGGGCHHHHHHHHS----CTTCTTEEEEEECGGGCCTTCCSHHHHTTS
T ss_pred ------------------------EEeecccCCcCCHHHHHHHHHh----cccCCCEEEEEeCCccCCCcccHHHHHcCc
Confidence 88887654432 2223333333 23578999999999987642 2 2223
Q ss_pred HHHhCCcEEEEeccchHHH
Q psy2970 185 IDRIMIDFWITLTLLIRWC 203 (329)
Q Consensus 185 ~~~~~~~~~etSAk~~~~~ 203 (329)
...++.+|+++|+++....
T Consensus 230 ~~~~~~~~~~v~~~s~~~i 248 (360)
T 3t34_A 230 SFKLKYPWVGVVNRSQADI 248 (360)
T ss_dssp SSCCSSCCEEECCCCHHHH
T ss_pred cccccCCeEEEEECChHHh
Confidence 3445688999999985443
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-15 Score=156.78 Aligned_cols=143 Identities=20% Similarity=0.144 Sum_probs=76.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCC--C-----------------------------CC--CCCCceeeeEEEeeCc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQ--F-----------------------------SQ--DMIPTVGFNMRKITKG 63 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~--~-----------------------------~~--~~~pTig~~~~~i~~~ 63 (329)
.+..++|+++|.+|+|||||+++|+... + .. ....|+...+..+..+
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 4556899999999999999999996310 0 00 1122333444455666
Q ss_pred eEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc
Q psy2970 64 NVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD 143 (329)
Q Consensus 64 ~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~ 143 (329)
+..+.||||||+++|.......++.+|+++ +|+|+++..
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~al-----------------------------------------LVVDa~~g~ 292 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAV-----------------------------------------LVVDSSQNN 292 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CC-----------------------------------------SEEEEEECC
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEE-----------------------------------------EEEECCCCc
Confidence 788999999999999877777888889888 999998532
Q ss_pred ---cH---HHHHHHHHHHHhCCcCCCCc-EEEEEEcCCCCC--hhh----HHHHHH----HhCC-----cEEEEeccchH
Q psy2970 144 ---KL---EASRNELHALIEKPQLIGIP-ILVLGNKRDLPN--ALD----EKELID----RIMI-----DFWITLTLLIR 201 (329)
Q Consensus 144 ---S~---~~~~~~l~~i~~~~~~~~iP-IiLVgNK~Dl~~--~~e----~~~l~~----~~~~-----~~~etSAk~~~ 201 (329)
.+ ......+..+ . ..++| ++||+||+|+.+ ... .+++.+ .+++ +++++||+++.
T Consensus 293 ~e~gi~~~~qt~e~l~~~-~---~lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~ 368 (592)
T 3mca_A 293 FERGFLENGQTREHAYLL-R---ALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGT 368 (592)
T ss_dssp SSTTSCSCSSHHHHHHHH-H---HSSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCS
T ss_pred cccccccchHHHHHHHHH-H---HcCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCc
Confidence 11 1112222222 1 13565 999999999976 211 223333 3354 69999999965
Q ss_pred HHH
Q psy2970 202 WCE 204 (329)
Q Consensus 202 ~~~ 204 (329)
+.+
T Consensus 369 gI~ 371 (592)
T 3mca_A 369 NLI 371 (592)
T ss_dssp SSC
T ss_pred ccc
Confidence 544
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.49 E-value=4.7e-14 Score=135.56 Aligned_cols=165 Identities=15% Similarity=0.153 Sum_probs=100.2
Q ss_pred ChHHHHHHHHHHHhcC---CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCC------CCCceeeeE--------------
Q psy2970 1 MFVLLNRILDWFKSLF---WKEEMELTLVGLQCSGKTTFVNVIASGQFSQD------MIPTVGFNM-------------- 57 (329)
Q Consensus 1 m~~~~~~~~~~~~~~~---~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~------~~pTig~~~-------------- 57 (329)
|..+++++.|.++..- .-+..+|+++|.+|||||||+|+|++.++.+. ..|++-...
T Consensus 9 l~~~~~~l~d~l~~~g~~~~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~ 88 (353)
T 2x2e_A 9 LIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKG 88 (353)
T ss_dssp CHHHHHHHHHHHHTTTCGGGCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTT
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCC
Confidence 4568889999887653 22457999999999999999999999887321 123310000
Q ss_pred ---------------------------------EEe-eCceEEEEEEecCCCc-------------cccchHHHHhhccc
Q psy2970 58 ---------------------------------RKI-TKGNVTIKVWDIGGQP-------------RFRSMWERYCRGVN 90 (329)
Q Consensus 58 ---------------------------------~~i-~~~~~~l~I~DtpG~e-------------~~~~~~~~~~~~ad 90 (329)
..+ ......+.+|||||.. .++.+...|++.++
T Consensus 89 ~~~tt~~~v~~~i~~~~~~i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (353)
T 2x2e_A 89 KKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKEN 168 (353)
T ss_dssp CCBCCHHHHHHHHHHHHHHHHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTT
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCC
Confidence 000 1124579999999963 23446667777777
Q ss_pred eeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEE
Q psy2970 91 AIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLG 170 (329)
Q Consensus 91 ~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVg 170 (329)
.+++ +|.|.+..-.-.....++..+ ...+.|+++|+
T Consensus 169 ~iiL----------------------------------------~v~~a~~~~~~~~~~~i~~~~----~~~~~~~i~V~ 204 (353)
T 2x2e_A 169 CLIL----------------------------------------AVSPANSDLANSDALKVAKEV----DPQGQRTIGVI 204 (353)
T ss_dssp EEEE----------------------------------------EEEETTSCGGGCHHHHHHHHH----CTTCTTEEEEE
T ss_pred eEEE----------------------------------------EEecCCCccchhHHHHHHHHh----CcCCCceEEEe
Confidence 6661 556665422111222233333 23578999999
Q ss_pred EcCCCCChhh-HHHHHHH------hC-CcEEEEeccchHHHHHHhhh
Q psy2970 171 NKRDLPNALD-EKELIDR------IM-IDFWITLTLLIRWCESFLHH 209 (329)
Q Consensus 171 NK~Dl~~~~e-~~~l~~~------~~-~~~~etSAk~~~~~~~~l~~ 209 (329)
||+|+.+..+ ..++.+. .+ .+++++||+++...+.+++.
T Consensus 205 NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~ 251 (353)
T 2x2e_A 205 TKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAA 251 (353)
T ss_dssp ECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHH
T ss_pred ccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHH
Confidence 9999976532 2233222 12 24677999996654444433
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=144.02 Aligned_cols=127 Identities=17% Similarity=0.123 Sum_probs=92.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC--CC------C------------CCCCCceeeeEEEeeCceEEEEEEecCCCcc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG--QF------S------------QDMIPTVGFNMRKITKGNVTIKVWDIGGQPR 77 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~--~~------~------------~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~ 77 (329)
++..+|+++|.+|+|||||+++|... .+ . ....+|++.....+..++..+.+|||||+.+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 45689999999999999999999831 11 0 0234566666666677789999999999999
Q ss_pred ccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHh
Q psy2970 78 FRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIE 157 (329)
Q Consensus 78 ~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~ 157 (329)
|...+..+++.+|+++ +|+|+++..+++....|. .+..
T Consensus 90 f~~~~~~~l~~aD~~i-----------------------------------------lVvDa~~g~~~~t~~~~~-~~~~ 127 (691)
T 1dar_A 90 FTIEVERSMRVLDGAI-----------------------------------------VVFDSSQGVEPQSETVWR-QAEK 127 (691)
T ss_dssp CHHHHHHHHHHCSEEE-----------------------------------------EEEETTTCSCHHHHHHHH-HHHH
T ss_pred hHHHHHHHHHHCCEEE-----------------------------------------EEEECCCCcchhhHHHHH-HHHH
Confidence 9999999999999999 999999877766655443 3332
Q ss_pred CCcCCCCcEEEEEEcCCCCChh---hHHHHHHHhCC
Q psy2970 158 KPQLIGIPILVLGNKRDLPNAL---DEKELIDRIMI 190 (329)
Q Consensus 158 ~~~~~~iPIiLVgNK~Dl~~~~---e~~~l~~~~~~ 190 (329)
.++|+++|+||+|+...+ ..+++.+.++.
T Consensus 128 ----~~~p~ivviNKiD~~~~~~~~~~~~l~~~l~~ 159 (691)
T 1dar_A 128 ----YKVPRIAFANKMDKTGADLWLVIRTMQERLGA 159 (691)
T ss_dssp ----TTCCEEEEEECTTSTTCCHHHHHHHHHHTTCC
T ss_pred ----cCCCEEEEEECCCcccCCHHHHHHHHHHHhCC
Confidence 478999999999998652 34555555553
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-13 Score=139.38 Aligned_cols=128 Identities=17% Similarity=0.177 Sum_probs=91.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCC--CC------C----------------CCCCceeeeEEEeeCceEEEEEEecC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQ--FS------Q----------------DMIPTVGFNMRKITKGNVTIKVWDIG 73 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~--~~------~----------------~~~pTig~~~~~i~~~~~~l~I~Dtp 73 (329)
++..+|+++|.+|+|||||+++|.... +. . ....|+......++.++..+.+||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 457899999999999999999998531 10 0 00112222233456778899999999
Q ss_pred CCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHH
Q psy2970 74 GQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELH 153 (329)
Q Consensus 74 G~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~ 153 (329)
|+++|......+++.+|+++ +|+|+++... ......+.
T Consensus 91 G~~df~~~~~~~l~~aD~~I-----------------------------------------lVvDa~~g~~-~~t~~~~~ 128 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCL-----------------------------------------MVIDAAKGVE-DRTRKLME 128 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEE-----------------------------------------EEEETTTCSC-HHHHHHHH
T ss_pred CChhHHHHHHHHHHHCCEEE-----------------------------------------EEEeCCccch-HHHHHHHH
Confidence 99999988888999999999 9999987543 12222232
Q ss_pred HHHhCCcCCCCcEEEEEEcCCCCChh---hHHHHHHHhCCc
Q psy2970 154 ALIEKPQLIGIPILVLGNKRDLPNAL---DEKELIDRIMID 191 (329)
Q Consensus 154 ~i~~~~~~~~iPIiLVgNK~Dl~~~~---e~~~l~~~~~~~ 191 (329)
.+ . ..++|+++|+||+|+.... ..+++.+.++.+
T Consensus 129 ~~-~---~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~~ 165 (529)
T 2h5e_A 129 VT-R---LRDTPILTFMNKLDRDIRDPMELLDEVENELKIG 165 (529)
T ss_dssp HH-T---TTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCE
T ss_pred HH-H---HcCCCEEEEEcCcCCccccHHHHHHHHHHHhCCC
Confidence 22 2 3578999999999998753 266777887764
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=131.00 Aligned_cols=156 Identities=16% Similarity=0.119 Sum_probs=77.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcC-CCCCCC--------CCceeeeEEE--e--eCceEEEEEEecCCC-------c
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASG-QFSQDM--------IPTVGFNMRK--I--TKGNVTIKVWDIGGQ-------P 76 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~-~~~~~~--------~pTig~~~~~--i--~~~~~~l~I~DtpG~-------e 76 (329)
..-.++|+++|++|||||||++++.+. .++... .+|++..... + +.....+.+|||+|+ +
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 345689999999999999999998875 443222 1333322211 1 234578999999998 5
Q ss_pred cccchHH-------HHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhc-ceeEEEEECCCcccHHHH
Q psy2970 77 RFRSMWE-------RYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLF-QLIKYMVDAADTDKLEAS 148 (329)
Q Consensus 77 ~~~~~~~-------~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lV~Dvt~~~S~~~~ 148 (329)
.++.+.. .++++..+.. ++.+...+ .++++..+.+. .+++..
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~-----------------------------rqrv~~ara~~ll~ldePt~-~~Ld~~ 144 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLN-----------------------------RRHIIDNRVHCCFYFISPFG-HGLKPL 144 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSC-----------------------------CTTCCCCCCCEEEEEECSSS-SSCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHh-----------------------------hhhhhhhhhhheeeeecCcc-cCCCHH
Confidence 5555554 4555544433 00000111 11223333222 234333
Q ss_pred H-HHHHHHHhCCcCCCCcEEEEEEcCCCCChh-------hHHHHHHHhCCcEEEEeccchHHHHHHhh
Q psy2970 149 R-NELHALIEKPQLIGIPILVLGNKRDLPNAL-------DEKELIDRIMIDFWITLTLLIRWCESFLH 208 (329)
Q Consensus 149 ~-~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~-------e~~~l~~~~~~~~~etSAk~~~~~~~~l~ 208 (329)
. ..+.++ ..++|+++|+||.|+.... ++.+++++++++++++||++. ..++.+.
T Consensus 145 ~~~~l~~l-----~~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~ 206 (301)
T 2qnr_A 145 DVAFMKAI-----HNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFK 206 (301)
T ss_dssp HHHHHHHH-----TTTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CH
T ss_pred HHHHHHHH-----HhcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHH
Confidence 3 233333 2467999999999998642 456778888999999999998 5555443
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=7.1e-13 Score=138.10 Aligned_cols=125 Identities=18% Similarity=0.153 Sum_probs=89.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCC-------------CC-------CCceeeeEEEeeCceEEEEEEecCCCcc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQ-------------DM-------IPTVGFNMRKITKGNVTIKVWDIGGQPR 77 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~-------------~~-------~pTig~~~~~i~~~~~~l~I~DtpG~e~ 77 (329)
++..+|+++|.+|+|||||++++.+..... ++ ..|+......+..+.+.+++|||||+++
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 456799999999999999999998432210 00 1122233334566788999999999999
Q ss_pred ccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHh
Q psy2970 78 FRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIE 157 (329)
Q Consensus 78 ~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~ 157 (329)
|......+++.+|+++ +|+|+++.... ....++..+..
T Consensus 87 f~~~~~~~l~~ad~~i-----------------------------------------lVvD~~~g~~~-qt~~~~~~~~~ 124 (665)
T 2dy1_A 87 FVGEIRGALEAADAAL-----------------------------------------VAVSAEAGVQV-GTERAWTVAER 124 (665)
T ss_dssp GHHHHHHHHHHCSEEE-----------------------------------------EEEETTTCSCH-HHHHHHHHHHH
T ss_pred hHHHHHHHHhhcCcEE-----------------------------------------EEEcCCcccch-hHHHHHHHHHH
Confidence 9988899999999999 99998775432 23344444433
Q ss_pred CCcCCCCcEEEEEEcCCCCCh---hhHHHHHHHhC
Q psy2970 158 KPQLIGIPILVLGNKRDLPNA---LDEKELIDRIM 189 (329)
Q Consensus 158 ~~~~~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~ 189 (329)
.++|+++|+||+|+. . ...+++++.++
T Consensus 125 ----~~ip~ilv~NKiD~~-~~~~~~~~~l~~~l~ 154 (665)
T 2dy1_A 125 ----LGLPRMVVVTKLDKG-GDYYALLEDLRSTLG 154 (665)
T ss_dssp ----TTCCEEEEEECGGGC-CCHHHHHHHHHHHHC
T ss_pred ----ccCCEEEEecCCchh-hhHHHHHHHHHHHhC
Confidence 478999999999987 4 23455555554
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.4e-13 Score=138.94 Aligned_cols=125 Identities=18% Similarity=0.222 Sum_probs=87.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCC---CCCCCceeeeEEEeeCc------------------------------e-
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFS---QDMIPTVGFNMRKITKG------------------------------N- 64 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~---~~~~pTig~~~~~i~~~------------------------------~- 64 (329)
...+|+|+|.+|||||||+|++++.++. ....|++.....-..+. .
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 4579999999999999999999998863 23333332110000000 0
Q ss_pred ----------EEEEEEecCCCcc-----------ccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCch
Q psy2970 65 ----------VTIKVWDIGGQPR-----------FRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGP 123 (329)
Q Consensus 65 ----------~~l~I~DtpG~e~-----------~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (329)
..+.+|||||... +......++..+|+++
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il------------------------------ 193 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLII------------------------------ 193 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEE------------------------------
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEE------------------------------
Confidence 2588999999875 4455667788899999
Q ss_pred hhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhHHHHHHHh
Q psy2970 124 MWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRI 188 (329)
Q Consensus 124 ~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~~l~~~~ 188 (329)
+|+|+++....+....++..+.+ .+.|+++|+||+|+.+..+..++...+
T Consensus 194 -----------~VvDa~~~~~~~~~~~~l~~l~~----~~~pvilVlNK~Dl~~~~el~~~~~~l 243 (550)
T 2qpt_A 194 -----------LLFDAHKLEISDEFSEAIGALRG----HEDKIRVVLNKADMVETQQLMRVYGAL 243 (550)
T ss_dssp -----------EEEETTSCCCCHHHHHHHHHTTT----CGGGEEEEEECGGGSCHHHHHHHHHHH
T ss_pred -----------EEEeCCcCCCCHHHHHHHHHHHh----cCCCEEEEEECCCccCHHHHHHHHHHh
Confidence 99999886666666666665532 457999999999998876655544443
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=4.2e-13 Score=140.52 Aligned_cols=117 Identities=19% Similarity=0.265 Sum_probs=81.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcee--------------eeEE------Eee---------Cce--
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVG--------------FNMR------KIT---------KGN-- 64 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig--------------~~~~------~i~---------~~~-- 64 (329)
.+..++|+|+|.+|+|||||+|+|.+.++. ....|++. ..+. .++ ...
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 346799999999999999999999988753 23334431 1110 000 000
Q ss_pred ----------------------------EEEEEEecCCCcc---ccchHHHHhhccceeEeecceeeehhcccccccccc
Q psy2970 65 ----------------------------VTIKVWDIGGQPR---FRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYY 113 (329)
Q Consensus 65 ----------------------------~~l~I~DtpG~e~---~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~ 113 (329)
..+.+|||||... .......+++.+|+++
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL-------------------- 205 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAIL-------------------- 205 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEE--------------------
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEE--------------------
Confidence 3588999999654 3445667889999999
Q ss_pred CCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh
Q psy2970 114 EPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA 178 (329)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~ 178 (329)
+|+|.+++.+......|...+ . ..+.|+++|+||+|+...
T Consensus 206 ---------------------~Vvda~~~~s~~e~~~l~~~l-~---~~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 206 ---------------------FVMRASQPCTLGERRYLENYI-K---GRGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp ---------------------EEEETTSTTCHHHHHHHHHHT-T---TSCCCEEEEEECGGGGGG
T ss_pred ---------------------EEEeCCCccchhHHHHHHHHH-H---hhCCCEEEEEECcccccc
Confidence 999999887776655443333 2 236789999999998643
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.41 E-value=2e-12 Score=135.31 Aligned_cols=134 Identities=20% Similarity=0.166 Sum_probs=96.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc--CCCC-----------C-------CCCCceeeeEEEeeCceEEEEEEecCCCcc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS--GQFS-----------Q-------DMIPTVGFNMRKITKGNVTIKVWDIGGQPR 77 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~--~~~~-----------~-------~~~pTig~~~~~i~~~~~~l~I~DtpG~e~ 77 (329)
++..+|+++|.+|+|||||+++|+. +.+. . ....|+......+..++..+.+|||||+.+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence 4568999999999999999999984 2221 0 122344444445666788999999999999
Q ss_pred ccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHh
Q psy2970 78 FRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIE 157 (329)
Q Consensus 78 ~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~ 157 (329)
+......+++.+|+++ +|+|+++..+......| ..+..
T Consensus 88 f~~~~~~~l~~aD~~l-----------------------------------------lVvDa~~g~~~~~~~~~-~~~~~ 125 (693)
T 2xex_A 88 FTVEVERSLRVLDGAV-----------------------------------------TVLDAQSGVEPQTETVW-RQATT 125 (693)
T ss_dssp CCHHHHHHHHHCSEEE-----------------------------------------EEEETTTBSCHHHHHHH-HHHHH
T ss_pred hHHHHHHHHHHCCEEE-----------------------------------------EEECCCCCCcHHHHHHH-HHHHH
Confidence 9999999999999999 99999987766555443 33432
Q ss_pred CCcCCCCcEEEEEEcCCCCChh---hHHHHHHHhCCc----EEEEec
Q psy2970 158 KPQLIGIPILVLGNKRDLPNAL---DEKELIDRIMID----FWITLT 197 (329)
Q Consensus 158 ~~~~~~iPIiLVgNK~Dl~~~~---e~~~l~~~~~~~----~~etSA 197 (329)
.++|+++|+||+|+...+ ..+++.+.++.. .+.+|+
T Consensus 126 ----~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~~~~~~~~ipisa 168 (693)
T 2xex_A 126 ----YGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPIGA 168 (693)
T ss_dssp ----TTCCEEEEEECTTSTTCCHHHHHHHHHHHHCCCEEESEEEECC
T ss_pred ----cCCCEEEEEECCCccccchHHHHHHHHHHhCCCceeEEeeccc
Confidence 478999999999998652 345566666642 455554
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.40 E-value=3.4e-12 Score=124.61 Aligned_cols=74 Identities=22% Similarity=0.244 Sum_probs=49.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCC-CC-CCceeeeEEEeeCc-----------------eEEEEEEecCCCcccc-
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQ-DM-IPTVGFNMRKITKG-----------------NVTIKVWDIGGQPRFR- 79 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~-~~-~pTig~~~~~i~~~-----------------~~~l~I~DtpG~e~~~- 79 (329)
.++|+++|.||||||||+|++++..+.. .+ .+|++.+...+... ...+++|||||+.++.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 3789999999999999999999877432 11 22444333222221 2579999999998753
Q ss_pred ------chHHHHhhccceeE
Q psy2970 80 ------SMWERYCRGVNAIV 93 (329)
Q Consensus 80 ------~~~~~~~~~ad~iI 93 (329)
.....+++++|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il 101 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIG 101 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEE
T ss_pred ccchHHHHHHHHHHhcCeEE
Confidence 22234678999999
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-12 Score=128.92 Aligned_cols=149 Identities=18% Similarity=0.188 Sum_probs=98.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-CCC-CCceeeeEEEeeCc-eEEEEEEecCCCccc----cchHHHH---hhccc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS-QDM-IPTVGFNMRKITKG-NVTIKVWDIGGQPRF----RSMWERY---CRGVN 90 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~-~~~-~pTig~~~~~i~~~-~~~l~I~DtpG~e~~----~~~~~~~---~~~ad 90 (329)
-.|.|+|++|||||||++++.+.... ..+ ..|.......+... ...+.+||+||.... ..+...+ .+.++
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 35889999999999999999887532 111 12223333333333 367899999997432 2222222 34567
Q ss_pred eeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC-cCCCCcEEEE
Q psy2970 91 AIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP-QLIGIPILVL 169 (329)
Q Consensus 91 ~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~-~~~~iPIiLV 169 (329)
.++ .++|++ .+.+..+..+..++.... ...+.|.++|
T Consensus 238 ~lL-----------------------------------------~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILV 275 (416)
T 1udx_A 238 VLL-----------------------------------------YVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVA 275 (416)
T ss_dssp EEE-----------------------------------------EEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEE
T ss_pred hhh-----------------------------------------EEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEE
Confidence 777 999998 666777777666665431 1245789999
Q ss_pred EEcCCCCChhhHHHH---HHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 170 GNKRDLPNALDEKEL---IDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 170 gNK~Dl~~~~e~~~l---~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+||+|+......+++ .++.+.+++++||++...++++++.+.
T Consensus 276 lNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~ 320 (416)
T 1udx_A 276 LNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEALH 320 (416)
T ss_dssp EECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHH
T ss_pred EECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHH
Confidence 999999876333333 344567899999999777777776553
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-12 Score=129.76 Aligned_cols=158 Identities=16% Similarity=0.115 Sum_probs=79.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC-CCC-------CCceeeeEEEe----eCceEEEEEEecCCCccccch---H
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS-QDM-------IPTVGFNMRKI----TKGNVTIKVWDIGGQPRFRSM---W 82 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~-------~pTig~~~~~i----~~~~~~l~I~DtpG~e~~~~~---~ 82 (329)
.-.++|+|+|++|||||||++.|++..+. ..+ .+|++.....+ ......+.+|||+|....... +
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 34579999999999999999999987663 211 23444333221 223357899999998654210 0
Q ss_pred H-----------HHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc-ccHHHHH-
Q psy2970 83 E-----------RYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT-DKLEASR- 149 (329)
Q Consensus 83 ~-----------~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~-~S~~~~~- 149 (329)
. .++..--+ +.+ .++..++ +.+++|+++.. .++....
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~-------------IaR---al~~d~~--------------~~vlL~ldePt~~~L~~~d~ 158 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESR-------------VNR---RQMPDNR--------------VQCCLYFIAPSGHGLKPLDI 158 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC--------------CC---CCCCCC---------------CCEEEEECCC-CCSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------------HHH---HhccCCC--------------eeEEEEEecCcccCCCHHHH
Confidence 1 11110000 001 1122222 11255555443 3454444
Q ss_pred HHHHHHHhCCcCCCCcEEEEEEcCCCCChh-------hHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 150 NELHALIEKPQLIGIPILVLGNKRDLPNAL-------DEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 150 ~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~-------e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
.++..+. .++|+++|+||+|+.... ++.+.++..+++++++||++....+..+..+
T Consensus 159 ~~lk~L~-----~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l 221 (418)
T 2qag_C 159 EFMKRLH-----EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKI 221 (418)
T ss_dssp HHHHHHT-----TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC--------------
T ss_pred HHHHHHh-----ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHH
Confidence 4555552 368999999999998753 3455667789999999999865555444333
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.36 E-value=7.6e-12 Score=131.26 Aligned_cols=127 Identities=17% Similarity=0.052 Sum_probs=90.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC--CCCC------------------CCCCceeeeEEEeeCce-------EEEEEE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG--QFSQ------------------DMIPTVGFNMRKITKGN-------VTIKVW 70 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~--~~~~------------------~~~pTig~~~~~i~~~~-------~~l~I~ 70 (329)
++..+|+++|..|+|||||+++|... .+.. ....|+......+..++ +.++||
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 45689999999999999999999742 1110 12234444443444333 899999
Q ss_pred ecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHH
Q psy2970 71 DIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRN 150 (329)
Q Consensus 71 DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~ 150 (329)
||||+.+|......+++.+|+++ +|+|+++.........
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aI-----------------------------------------lVvDa~~gv~~qt~~~ 126 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAV-----------------------------------------MVYCAVGGVQPQSETV 126 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEE-----------------------------------------EEEeCCCCCcHHHHHH
Confidence 99999999998999999999999 9999998655444333
Q ss_pred HHHHHHhCCcCCCCcEEEEEEcCCCCCh---hhHHHHHHHhCC
Q psy2970 151 ELHALIEKPQLIGIPILVLGNKRDLPNA---LDEKELIDRIMI 190 (329)
Q Consensus 151 ~l~~i~~~~~~~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~~ 190 (329)
+..+. ..++|+++|+||+|+... .-.+++.+.++.
T Consensus 127 -~~~~~----~~~ip~ilviNKiD~~~~~~~~~~~~l~~~l~~ 164 (704)
T 2rdo_7 127 -WRQAN----KYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGA 164 (704)
T ss_pred -HHHHH----HcCCCEEEEEeCCCcccccHHHHHHHHHHHhCC
Confidence 33332 247899999999999765 234455555554
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.8e-12 Score=136.94 Aligned_cols=113 Identities=17% Similarity=0.165 Sum_probs=84.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC------------CCC------CCCCCceeeeEEEe----------------eCc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG------------QFS------QDMIPTVGFNMRKI----------------TKG 63 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~------------~~~------~~~~pTig~~~~~i----------------~~~ 63 (329)
.+..||+++|.+|+|||||+++|+.. .+. .....|++.....+ +++
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 34579999999999999999999853 111 01122443322221 334
Q ss_pred eEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc
Q psy2970 64 NVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD 143 (329)
Q Consensus 64 ~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~ 143 (329)
++.+++|||||+.+|...+..+++.+|+++ +|+|+++..
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ai-----------------------------------------lVvDa~~g~ 135 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGAL-----------------------------------------VVVDTIEGV 135 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEE-----------------------------------------EEEETTTBS
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEE-----------------------------------------EEEeCCCCC
Confidence 789999999999999999999999999999 999999988
Q ss_pred cHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 144 KLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 144 S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+++....|.. +.. .++|+++|+||+|+.
T Consensus 136 ~~qt~~~~~~-~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 136 CVQTETVLRQ-ALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp CHHHHHHHHH-HHH----TTCEEEEEEECHHHH
T ss_pred CHHHHHHHHH-HHH----cCCCeEEEEECCCcc
Confidence 8777655443 322 468999999999986
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=4e-12 Score=122.42 Aligned_cols=142 Identities=15% Similarity=0.133 Sum_probs=89.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcC------CCC---CCCCCce-------------------eeeEEE---------
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASG------QFS---QDMIPTV-------------------GFNMRK--------- 59 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~------~~~---~~~~pTi-------------------g~~~~~--------- 59 (329)
..+...|+++|.+|||||||++++... +.. .+...+. +..+..
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~ 155 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGG 155 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccc
Confidence 346789999999999999999999632 100 0000000 011110
Q ss_pred -----------eeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhh
Q psy2970 60 -----------ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSL 128 (329)
Q Consensus 60 -----------i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (329)
++..++.+.|+||||.. .........+|.++
T Consensus 156 ~~~~t~d~i~~~~~~~~~~iiiDTpGi~---~~~~~~~~~aD~vl----------------------------------- 197 (355)
T 3p32_A 156 VTRATRETVVLLEAAGFDVILIETVGVG---QSEVAVANMVDTFV----------------------------------- 197 (355)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSCS---SHHHHHHTTCSEEE-----------------------------------
T ss_pred hhHHHHHHHHHHhhCCCCEEEEeCCCCC---cHHHHHHHhCCEEE-----------------------------------
Confidence 12245788999999943 22334457888888
Q ss_pred hcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhH----HHHHHHh----------CCcEEE
Q psy2970 129 LFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDE----KELIDRI----------MIDFWI 194 (329)
Q Consensus 129 ~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~----~~l~~~~----------~~~~~e 194 (329)
+|+|.+..+.+..+. ....+.|+++|+||+|+.+..+. +++.+.+ +.++++
T Consensus 198 ------~V~d~~~~~~~~~l~---------~~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~ 262 (355)
T 3p32_A 198 ------LLTLARTGDQLQGIK---------KGVLELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLT 262 (355)
T ss_dssp ------EEEESSTTCTTTTCC---------TTSGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEE
T ss_pred ------EEECCCCCccHHHHH---------HhHhhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEE
Confidence 999987654432222 11234689999999999865332 2333332 578999
Q ss_pred EeccchHHHHHHhhhhc
Q psy2970 195 TLTLLIRWCESFLHHFG 211 (329)
Q Consensus 195 tSAk~~~~~~~~l~~i~ 211 (329)
+||+++.+++++++.+.
T Consensus 263 iSA~~g~Gi~~L~~~i~ 279 (355)
T 3p32_A 263 MSAVEGRGLAELWDTVE 279 (355)
T ss_dssp EBGGGTBSHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHH
Confidence 99999777777776664
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=99.28 E-value=2.1e-11 Score=119.07 Aligned_cols=73 Identities=22% Similarity=0.261 Sum_probs=49.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC------CCCCCceeeeEEE----------ee-------CceEEEEEEecCCCcc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS------QDMIPTVGFNMRK----------IT-------KGNVTIKVWDIGGQPR 77 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~------~~~~pTig~~~~~----------i~-------~~~~~l~I~DtpG~e~ 77 (329)
++|+++|.||||||||+|++++.... ....|+++..... +. .....+++|||||+..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 57999999999999999999875421 1233444433110 00 1245799999999876
Q ss_pred cc-------chHHHHhhccceeE
Q psy2970 78 FR-------SMWERYCRGVNAIV 93 (329)
Q Consensus 78 ~~-------~~~~~~~~~ad~iI 93 (329)
.. ......++.+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii 104 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIA 104 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEE
T ss_pred cccccchHHHHHHHHHHhCCEEE
Confidence 52 12334678999999
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-11 Score=108.56 Aligned_cols=163 Identities=12% Similarity=0.081 Sum_probs=87.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE------EeeCceEEEEEEecCCCccccchHH-H---Hhhc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR------KITKGNVTIKVWDIGGQPRFRSMWE-R---YCRG 88 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~------~i~~~~~~l~I~DtpG~e~~~~~~~-~---~~~~ 88 (329)
+..+|+++|.+|||||||++++...........++..+.. .+...+..+..+|++|......... . ...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 5679999999999999999999865322111111111110 0112234455667766532211110 0 2234
Q ss_pred cceeEe-ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEE
Q psy2970 89 VNAIVW-TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPIL 167 (329)
Q Consensus 89 ad~iI~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIi 167 (329)
.|.++| |.|.. ..| . .| ....+++++|+|+++... ....+. +. .+.|++
T Consensus 109 ~d~iiidt~G~~-~~~-----~--~~-------------~~~~~~~i~vvd~~~~~~--~~~~~~-~~------~~~~~i 158 (221)
T 2wsm_A 109 CDLLLIENVGNL-ICP-----V--DF-------------DLGENYRVVMVSVTEGDD--VVEKHP-EI------FRVADL 158 (221)
T ss_dssp CSEEEEEEEEBS-SGG-----G--GC-------------CCSCSEEEEEEEGGGCTT--HHHHCH-HH------HHTCSE
T ss_pred CCEEEEeCCCCC-CCC-----c--hh-------------ccccCcEEEEEeCCCcch--hhhhhh-hh------hhcCCE
Confidence 455552 11100 000 0 00 011244669999876532 111111 11 246889
Q ss_pred EEEEcCCCCCh-----hhHHHHHHHh--CCcEEEEeccchHHHHHHhhhhc
Q psy2970 168 VLGNKRDLPNA-----LDEKELIDRI--MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 168 LVgNK~Dl~~~-----~e~~~l~~~~--~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|+||+|+.+. .+..+..+++ +.+++++||+++.+.+.+++.+.
T Consensus 159 iv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~ 209 (221)
T 2wsm_A 159 IVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLR 209 (221)
T ss_dssp EEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHH
T ss_pred EEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHH
Confidence 99999998643 3344444554 36899999999887888776654
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=9.1e-12 Score=112.67 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=21.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHH
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIA 41 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~ 41 (329)
.+...+++.|.+||||||+++++.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHH
Confidence 456789999999999999999997
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=5e-12 Score=111.74 Aligned_cols=164 Identities=13% Similarity=0.143 Sum_probs=88.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE------eeCceEEEEEEecCCCccccc-hHHHHh----
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK------ITKGNVTIKVWDIGGQPRFRS-MWERYC---- 86 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~------i~~~~~~l~I~DtpG~e~~~~-~~~~~~---- 86 (329)
++..+|+++|++|||||||++++....+...+.++++.++.. +...+......|+++...... .....+
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 356899999999999999999999876655555666655421 111123444555554422110 001111
Q ss_pred -hccceeEeec-ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCC
Q psy2970 87 -RGVNAIVWTG-GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGI 164 (329)
Q Consensus 87 -~~ad~iI~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~i 164 (329)
.+.|.+++.. |. .. .+.+..........++|..+...... ..... .+.
T Consensus 116 ~~~~d~~~id~~g~-i~--------------------~~~s~~~~~~~~~~v~~~~~~~~~~~---~~~~~------~~~ 165 (226)
T 2hf9_A 116 LDEIDLLFIENVGN-LI--------------------CPADFDLGTHKRIVVISTTEGDDTIE---KHPGI------MKT 165 (226)
T ss_dssp GGGCSEEEEECCSC-SS--------------------GGGGCCCSCSEEEEEEEGGGCTTTTT---TCHHH------HTT
T ss_pred cCCCCEEEEeCCCC-cc--------------------CcchhhhccCcEEEEEecCcchhhHh---hhhhH------hhc
Confidence 1234444210 00 00 01111112233456777532211100 00111 146
Q ss_pred cEEEEEEcCCCCCh-----hhHHHHHHHh--CCcEEEEeccchHHHHHHhhhhc
Q psy2970 165 PILVLGNKRDLPNA-----LDEKELIDRI--MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 165 PIiLVgNK~Dl~~~-----~e~~~l~~~~--~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|.++|+||+|+.+. .+..++++++ +.+++++||+++...+++++.+.
T Consensus 166 ~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 219 (226)
T 2hf9_A 166 ADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIE 219 (226)
T ss_dssp CSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHH
T ss_pred CCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHH
Confidence 88999999998653 3344555655 57899999999877777776553
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-10 Score=112.64 Aligned_cols=140 Identities=16% Similarity=0.117 Sum_probs=81.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC------CCC-CCCCCcee---------------------eeEE------------
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG------QFS-QDMIPTVG---------------------FNMR------------ 58 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~------~~~-~~~~pTig---------------------~~~~------------ 58 (329)
....|.++|.||||||||+|++.+. +.. ....|+.. ..+.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 3689999999999999999999851 110 00001100 0000
Q ss_pred --------EeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhc
Q psy2970 59 --------KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLF 130 (329)
Q Consensus 59 --------~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (329)
.++..++.+.++||+|... ......+.+|.++
T Consensus 153 r~~~~~~~~~~~~~~~~iliDT~Gi~~---~~~~l~~~~d~vl------------------------------------- 192 (349)
T 2www_A 153 RTTNEAILLCEGAGYDIILIETVGVGQ---SEFAVADMVDMFV------------------------------------- 192 (349)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECCCC-----CHHHHHTTCSEEE-------------------------------------
T ss_pred HHHHHHHHhhccCCCCEEEEECCCcch---hhhhHHhhCCEEE-------------------------------------
Confidence 0122456788999999532 1233456788888
Q ss_pred ceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhh----HHHHHHH----------hCCcEEEEe
Q psy2970 131 QLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD----EKELIDR----------IMIDFWITL 196 (329)
Q Consensus 131 ~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e----~~~l~~~----------~~~~~~etS 196 (329)
+|+|.++....+.... .+ .+.|.++|+||+|+.+... ..++... ...+++.+|
T Consensus 193 ----~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iS 259 (349)
T 2www_A 193 ----LLLPPAGGDELQGIKR---GI------IEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRIS 259 (349)
T ss_dssp ----EEECCC---------------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECC
T ss_pred ----EEEcCCcchhHHHhHH---HH------HhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEe
Confidence 9999886543221111 12 2457899999999976432 2233321 135689999
Q ss_pred ccchHHHHHHhhhhc
Q psy2970 197 TLLIRWCESFLHHFG 211 (329)
Q Consensus 197 Ak~~~~~~~~l~~i~ 211 (329)
|+++.+.+++.+.+.
T Consensus 260 A~~g~Gi~~L~~~I~ 274 (349)
T 2www_A 260 ARSGEGISEMWDKMK 274 (349)
T ss_dssp TTTCTTHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHH
Confidence 999777777776654
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.08 E-value=6.1e-11 Score=113.69 Aligned_cols=96 Identities=16% Similarity=0.126 Sum_probs=59.6
Q ss_pred ceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc
Q psy2970 63 GNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT 142 (329)
Q Consensus 63 ~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~ 142 (329)
.++.+.++||||..... ....+.+|.++ +|+|.++.
T Consensus 147 ~~~~i~liDTpG~~~~~---~~~~~~aD~vl-----------------------------------------~Vvd~~~~ 182 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSE---TEVARMVDCFI-----------------------------------------SLQIAGGG 182 (341)
T ss_dssp TTCSEEEEEEECCTTHH---HHHHTTCSEEE-----------------------------------------EEECC---
T ss_pred cCCCEEEEeCCCccchH---HHHHHhCCEEE-----------------------------------------EEEeCCcc
Confidence 45789999999965432 23457888888 99998754
Q ss_pred ccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhHH----HHHH---Hh-------CCcEEEEeccchHHHHHHhh
Q psy2970 143 DKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEK----ELID---RI-------MIDFWITLTLLIRWCESFLH 208 (329)
Q Consensus 143 ~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~----~l~~---~~-------~~~~~etSAk~~~~~~~~l~ 208 (329)
+.++.+.. . ..+.|.++|+||+|+.+..+.. ++.+ .+ ..+++++||+++.+.+.+.+
T Consensus 183 ~~~~~l~~---~------~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~ 253 (341)
T 2p67_A 183 DDLQGIKK---G------LMEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWH 253 (341)
T ss_dssp ---CCCCH---H------HHHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHH
T ss_pred HHHHHHHH---h------hhcccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHH
Confidence 32211110 0 1246789999999998753322 2322 22 35689999999777777776
Q ss_pred hhc
Q psy2970 209 HFG 211 (329)
Q Consensus 209 ~i~ 211 (329)
.+.
T Consensus 254 ~l~ 256 (341)
T 2p67_A 254 AII 256 (341)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.4e-10 Score=110.87 Aligned_cols=113 Identities=17% Similarity=0.174 Sum_probs=77.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-CCC-CCceeeeEEEeeCceEEEEEEecCCCccccc-------hHHHHhhccce
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS-QDM-IPTVGFNMRKITKGNVTIKVWDIGGQPRFRS-------MWERYCRGVNA 91 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~-~~~-~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~-------~~~~~~~~ad~ 91 (329)
.+|.++|.||||||||+|++++.+.. ..| ..|+......+...+.++++.||||...-.. ..-...+.+|.
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~ 152 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNL 152 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSE
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCc
Confidence 58999999999999999999987653 223 3455566666778889999999999643211 12235677888
Q ss_pred eEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCccc-HHHHHHHHHHHHhCCcCCCCcEEEEE
Q psy2970 92 IVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDK-LEASRNELHALIEKPQLIGIPILVLG 170 (329)
Q Consensus 92 iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S-~~~~~~~l~~i~~~~~~~~iPIiLVg 170 (329)
++ +|+|+++|.. .+.+...+... .....+.|.+++.
T Consensus 153 il-----------------------------------------~vvD~~~p~~~~~~i~~EL~~~--~~~l~~k~~~i~~ 189 (376)
T 4a9a_A 153 LF-----------------------------------------IILDVNKPLHHKQIIEKELEGV--GIRLNKTPPDILI 189 (376)
T ss_dssp EE-----------------------------------------EEEETTSHHHHHHHHHHHHHHT--TEEETCCCCCEEE
T ss_pred cc-----------------------------------------cccccCccHHHHHHHHHHHHHh--hHhhccCChhhhh
Confidence 88 9999998742 22222222222 1123467888999
Q ss_pred EcCCCC
Q psy2970 171 NKRDLP 176 (329)
Q Consensus 171 NK~Dl~ 176 (329)
||.|..
T Consensus 190 nK~d~~ 195 (376)
T 4a9a_A 190 KKKEKG 195 (376)
T ss_dssp EECSSS
T ss_pred hHhhhh
Confidence 999974
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.02 E-value=7.9e-10 Score=117.06 Aligned_cols=43 Identities=26% Similarity=0.381 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhcC---CCCceEEEEEcCCCCCHHHHHHHHHcCCC
Q psy2970 3 VLLNRILDWFKSLF---WKEEMELTLVGLQCSGKTTFVNVIASGQF 45 (329)
Q Consensus 3 ~~~~~~~~~~~~~~---~~k~lkIlllG~~gvGKSSLin~l~~~~~ 45 (329)
.+++++.|-++++- .-.-.+|+|+|.+++|||||+|++++.++
T Consensus 31 ~~inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~ 76 (772)
T 3zvr_A 31 PLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDF 76 (772)
T ss_dssp HHHHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHhcCccccCCCCEEEEECCCCCcHHHHHHHHhCCCc
Confidence 46778888777663 23457999999999999999999999876
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=6.3e-09 Score=106.28 Aligned_cols=127 Identities=15% Similarity=0.164 Sum_probs=91.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC-------------C-----CC------CCCCCceeeeEEEeeCceEEEEEEecCC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG-------------Q-----FS------QDMIPTVGFNMRKITKGNVTIKVWDIGG 74 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~-------------~-----~~------~~~~pTig~~~~~i~~~~~~l~I~DtpG 74 (329)
+.=+|.|+|..++|||||..+|+.. . +. .+..-|+......+..++..++|.||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 3468999999999999999999521 0 00 1111223333335678889999999999
Q ss_pred CccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHH
Q psy2970 75 QPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHA 154 (329)
Q Consensus 75 ~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~ 154 (329)
..+|.......++-+|+.+ +|+|+..--.-+.. ..++.
T Consensus 110 HvDF~~Ev~raL~~~DgAv-----------------------------------------lVvda~~GV~~qT~-~v~~~ 147 (548)
T 3vqt_A 110 HQDFSEDTYRVLTAVDSAL-----------------------------------------VVIDAAKGVEAQTR-KLMDV 147 (548)
T ss_dssp GGGCSHHHHHHHHSCSEEE-----------------------------------------EEEETTTBSCHHHH-HHHHH
T ss_pred cHHHHHHHHHHHHhcCceE-----------------------------------------EEeecCCCcccccH-HHHHH
Confidence 9999999999999999999 99999864332333 33344
Q ss_pred HHhCCcCCCCcEEEEEEcCCCCCh---hhHHHHHHHhCCc
Q psy2970 155 LIEKPQLIGIPILVLGNKRDLPNA---LDEKELIDRIMID 191 (329)
Q Consensus 155 i~~~~~~~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~~~ 191 (329)
+.+ .++|++++.||+|.+.. .-.+++.+.++..
T Consensus 148 a~~----~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~~~ 183 (548)
T 3vqt_A 148 CRM----RATPVMTFVNKMDREALHPLDVMADIEQHLQIE 183 (548)
T ss_dssp HHH----TTCCEEEEEECTTSCCCCHHHHHHHHHHHHTSE
T ss_pred HHH----hCCceEEEEecccchhcchhHhhhhhhhhcCCc
Confidence 433 57999999999999876 3467777888754
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=6.7e-09 Score=102.45 Aligned_cols=77 Identities=23% Similarity=0.343 Sum_probs=46.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCC--CCceeeeEEEee--Cc---------------eEEEEEEecCCCcc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDM--IPTVGFNMRKIT--KG---------------NVTIKVWDIGGQPR 77 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~--~pTig~~~~~i~--~~---------------~~~l~I~DtpG~e~ 77 (329)
.+..++|.++|.+|||||||+|++++..+.... ..|++.+...+. +. ...+.+|||||+..
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 356789999999999999999999988653222 223333333221 11 23599999999886
Q ss_pred ccc-------hHHHHhhccceeE
Q psy2970 78 FRS-------MWERYCRGVNAIV 93 (329)
Q Consensus 78 ~~~-------~~~~~~~~ad~iI 93 (329)
... .+..+++++|+++
T Consensus 99 ~as~~~glg~~~l~~ir~aD~Il 121 (396)
T 2ohf_A 99 GAHNGQGLGNAFLSHISACDGIF 121 (396)
T ss_dssp --------CCHHHHHHHTSSSEE
T ss_pred ccchhhHHHHHHHHHHHhcCeEE
Confidence 543 4567889999999
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=8.4e-09 Score=94.35 Aligned_cols=155 Identities=17% Similarity=0.204 Sum_probs=98.3
Q ss_pred HHHHhcCCCCceEEEEEcCC-CCCHHHHHHHHHcCC-CC------CCCCCcee--eeEEEeeCc-e--------------
Q psy2970 10 DWFKSLFWKEEMELTLVGLQ-CSGKTTFVNVIASGQ-FS------QDMIPTVG--FNMRKITKG-N-------------- 64 (329)
Q Consensus 10 ~~~~~~~~~k~lkIlllG~~-gvGKSSLin~l~~~~-~~------~~~~pTig--~~~~~i~~~-~-------------- 64 (329)
+|+.+++.+.+.++++.|++ +-=+.+|+.+++..+ .. ......+| +.+. +++. .
T Consensus 6 ~~~~s~~~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~-~~~~~~fni~tlys~~~~er 84 (227)
T 3l82_B 6 SFLHSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQ-LNNQHKFNILILYSTTRKER 84 (227)
T ss_dssp CSSSCCCCCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEE-SSSSCEEEEEECSCC-----
T ss_pred HHHHHhccCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEE-ECCeeEEEEEEeccCcHHHh
Confidence 35678888999999999973 334668999998754 21 11112222 1111 1100 0
Q ss_pred -----------EEEEEE------ecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhh
Q psy2970 65 -----------VTIKVW------DIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLS 127 (329)
Q Consensus 65 -----------~~l~I~------DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (329)
-++-.. |.+||+.++.+|+.|++++|++|
T Consensus 85 ~~~~~~~~~~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglI---------------------------------- 130 (227)
T 3l82_B 85 DRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFI---------------------------------- 130 (227)
T ss_dssp --------------------------------CCHHHHHHHCSEEE----------------------------------
T ss_pred hhhhhhhhhhhhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEE----------------------------------
Confidence 012222 33489999999999999999999
Q ss_pred hhcceeEEEEECCCcccHHHHHHHH---HHHHhCCc-CCCCcEEEEEEcC-CCCChhhHHHHHHHhCC-------cEEEE
Q psy2970 128 LLFQLIKYMVDAADTDKLEASRNEL---HALIEKPQ-LIGIPILVLGNKR-DLPNALDEKELIDRIMI-------DFWIT 195 (329)
Q Consensus 128 ~~~~~~~lV~Dvt~~~S~~~~~~~l---~~i~~~~~-~~~iPIiLVgNK~-Dl~~~~e~~~l~~~~~~-------~~~et 195 (329)
||+|.+|++.++ .+..+ ..+++... ..++|++|++||. |++++....++++.+++ ....|
T Consensus 131 -------fVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l~R~W~Iq~c 202 (227)
T 3l82_B 131 -------YVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWLVQDT 202 (227)
T ss_dssp -------EEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSCEEEEEE
T ss_pred -------EEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCCCCCEEEEEe
Confidence 999999987765 66655 34444332 3789999999995 89888888888888875 27889
Q ss_pred eccchHHHHHHh
Q psy2970 196 LTLLIRWCESFL 207 (329)
Q Consensus 196 SAk~~~~~~~~l 207 (329)
||+++.++.+-+
T Consensus 203 sA~TGeGL~EGL 214 (227)
T 3l82_B 203 EAETLTGFLNGI 214 (227)
T ss_dssp ETTTCTTHHHHH
T ss_pred ECCCCcCHHHHH
Confidence 999976666544
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.5e-08 Score=95.56 Aligned_cols=93 Identities=11% Similarity=-0.015 Sum_probs=75.8
Q ss_pred CccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc-cHHHHHHHHH
Q psy2970 75 QPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD-KLEASRNELH 153 (329)
Q Consensus 75 ~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~-S~~~~~~~l~ 153 (329)
+++++.+.+.+++++|.++ +|+|+++++ +++.+..|+.
T Consensus 66 ~er~~~l~r~~~~naD~vl-----------------------------------------iV~d~~~p~~s~~~l~~~l~ 104 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVI-----------------------------------------IVETLKMPEFNNYLLDNMLV 104 (302)
T ss_dssp CCCSCEEETTEEESCCEEE-----------------------------------------EEECSTTTTCCHHHHHHHHH
T ss_pred CChHHHHhHHHHHhcCEEE-----------------------------------------EEEECCCCCCCHHHHHHHHH
Confidence 7788888888999999999 999999986 8888888887
Q ss_pred HHHhCCcCCCCcEEEEEEcCCCCChh------hHHHHHHHhCCcEEEEeccchHHHHHHhhhhcC
Q psy2970 154 ALIEKPQLIGIPILVLGNKRDLPNAL------DEKELIDRIMIDFWITLTLLIRWCESFLHHFGS 212 (329)
Q Consensus 154 ~i~~~~~~~~iPIiLVgNK~Dl~~~~------e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~~ 212 (329)
.+.. .++|+++|+||+|+.++. +..++.++++++++++||+++.+.++++..+..
T Consensus 105 ~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 105 VYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp HHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTTT
T ss_pred HHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhccC
Confidence 6543 579999999999998653 234455667899999999998888888876643
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.9e-08 Score=96.58 Aligned_cols=24 Identities=17% Similarity=0.434 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHH
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIA 41 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~ 41 (329)
.+...+.++|++|||||||++.+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999997
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.73 E-value=1.4e-07 Score=92.75 Aligned_cols=77 Identities=23% Similarity=0.391 Sum_probs=50.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCC--ceeeeEEEe--eCc---------------eEEEEEEecCCCcc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQF-SQDMIP--TVGFNMRKI--TKG---------------NVTIKVWDIGGQPR 77 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~-~~~~~p--Tig~~~~~i--~~~---------------~~~l~I~DtpG~e~ 77 (329)
++..++.++|++|||||||+|++++... .....| |+..+...+ .+. ...+.+||+||...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 4568999999999999999999999765 222222 222222222 211 14689999999543
Q ss_pred -------ccchHHHHhhccceeEe
Q psy2970 78 -------FRSMWERYCRGVNAIVW 94 (329)
Q Consensus 78 -------~~~~~~~~~~~ad~iI~ 94 (329)
+.+.....++.+|+++.
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~ 121 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQ 121 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEE
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 33345567788998883
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.8e-07 Score=97.97 Aligned_cols=124 Identities=20% Similarity=0.160 Sum_probs=83.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc--------CCCCC-----C-------CCCceeeeEEEe-------eCceEEEEEEecC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS--------GQFSQ-----D-------MIPTVGFNMRKI-------TKGNVTIKVWDIG 73 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~--------~~~~~-----~-------~~pTig~~~~~i-------~~~~~~l~I~Dtp 73 (329)
-+|.|+|...+|||||..+|+. ++... + ..-|+......+ +.+++.+++.|||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 3799999999999999999962 11110 0 001111111111 2347899999999
Q ss_pred CCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHH
Q psy2970 74 GQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELH 153 (329)
Q Consensus 74 G~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~ 153 (329)
|+.+|.......++-+|+.+ +|+|+..--.- .....++
T Consensus 94 GHvDF~~Ev~~aLr~~Dgav-----------------------------------------lvVDaveGV~~-qT~~v~~ 131 (709)
T 4fn5_A 94 GHVDFTIEVERSLRVLDGAV-----------------------------------------VVFCGTSGVEP-QSETVWR 131 (709)
T ss_dssp SCTTCHHHHHHHHHHCSEEE-----------------------------------------EEEETTTCSCH-HHHHHHH
T ss_pred CCcccHHHHHHHHHHhCeEE-----------------------------------------EEEECCCCCch-hHHHHHH
Confidence 99999999899999999999 99998763222 2233344
Q ss_pred HHHhCCcCCCCcEEEEEEcCCCCCh---hhHHHHHHHhCC
Q psy2970 154 ALIEKPQLIGIPILVLGNKRDLPNA---LDEKELIDRIMI 190 (329)
Q Consensus 154 ~i~~~~~~~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~~ 190 (329)
...+ .++|.++|.||+|.... ...+++.+.++.
T Consensus 132 ~a~~----~~lp~i~~iNKiDr~~a~~~~~~~ei~~~l~~ 167 (709)
T 4fn5_A 132 QANK----YGVPRIVYVNKMDRQGANFLRVVEQIKKRLGH 167 (709)
T ss_dssp HHHH----HTCCEEEEEECSSSTTCCHHHHHHHHHHHHCS
T ss_pred HHHH----cCCCeEEEEccccccCccHHHHHHHhhhhccc
Confidence 4433 47899999999999765 346667777764
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.3e-08 Score=105.51 Aligned_cols=123 Identities=20% Similarity=0.271 Sum_probs=86.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc--CCCC-----------CCC-------CCceeeeEEEeeCceEEEEEEecCCCccccch
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS--GQFS-----------QDM-------IPTVGFNMRKITKGNVTIKVWDIGGQPRFRSM 81 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~--~~~~-----------~~~-------~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~ 81 (329)
+|.++|..++|||||..+|+. +.+. .++ .-|+......+..++..+++.||||+.+|...
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~E 83 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAE 83 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHH
Confidence 689999999999999999962 1111 000 11222222345678889999999999999998
Q ss_pred HHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcC
Q psy2970 82 WERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQL 161 (329)
Q Consensus 82 ~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~ 161 (329)
....++-+|+.+ +|+|+..--.-+ ....++.+.+
T Consensus 84 v~raL~~~Dgav-----------------------------------------lVVDa~~GV~~q-T~~v~~~a~~---- 117 (638)
T 3j25_A 84 VYRSLSVLDGAI-----------------------------------------LLISAKDGVQAQ-TRILFHALRK---- 117 (638)
T ss_dssp HHHHHTTCSEEE-----------------------------------------CCEESSCTTCSH-HHHHHHHHHH----
T ss_pred HHHHHHHhCEEE-----------------------------------------EEEeCCCCCcHH-HHHHHHHHHH----
Confidence 889999999999 999987532112 2233333332
Q ss_pred CCCcEEEEEEcCCCCCh---hhHHHHHHHhCC
Q psy2970 162 IGIPILVLGNKRDLPNA---LDEKELIDRIMI 190 (329)
Q Consensus 162 ~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~~ 190 (329)
.++|.+++.||+|.... ...+++.+.++.
T Consensus 118 ~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~ 149 (638)
T 3j25_A 118 MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSA 149 (638)
T ss_dssp HTCSCEECCEECCSSSCCSHHHHHHHHHTTCC
T ss_pred cCCCeEEEEeccccccCCHHHHHHHHHHHhCC
Confidence 46899999999999775 345666666653
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=4.1e-08 Score=93.60 Aligned_cols=94 Identities=16% Similarity=0.182 Sum_probs=71.7
Q ss_pred cCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHH
Q psy2970 72 IGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNE 151 (329)
Q Consensus 72 tpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~ 151 (329)
.+||+.++.+|+.|++++|++| ||+|.+|++.++ .+..
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglI-----------------------------------------fVVDSsDreRle-ak~E 231 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFI-----------------------------------------YVANAEAHKRHE-WQDE 231 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEE-----------------------------------------ECCBCBTTCCCC-HHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEE-----------------------------------------EEecCCcHhHHH-HHHH
Confidence 5689999999999999999999 999999998766 4444
Q ss_pred HH---HHHhCCc-CCCCcEEEEEEc-CCCCChhhHHHHHHHhCCc-------EEEEeccchHHHHHHh
Q psy2970 152 LH---ALIEKPQ-LIGIPILVLGNK-RDLPNALDEKELIDRIMID-------FWITLTLLIRWCESFL 207 (329)
Q Consensus 152 l~---~i~~~~~-~~~iPIiLVgNK-~Dl~~~~e~~~l~~~~~~~-------~~etSAk~~~~~~~~l 207 (329)
+. .+++... ..++|++|++|| .|++++....++++.+++. ...|||.++.++.+-+
T Consensus 232 L~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGl 299 (312)
T 3l2o_B 232 FSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGI 299 (312)
T ss_dssp HHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHH
T ss_pred HHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCccCCCcEEEEecccCCCcCHHHHH
Confidence 43 3443322 368999999997 5999888888888888752 7889999966655533
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.8e-08 Score=97.82 Aligned_cols=56 Identities=23% Similarity=0.368 Sum_probs=37.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC------CCCCCCCC--ceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASG------QFSQDMIP--TVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~------~~~~~~~p--Tig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
..+|+++|.+|||||||+|++.+. .......| |.......++.+ +.++||||....
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~ 225 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIINH 225 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCCCC
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcH
Confidence 468999999999999999999975 23222222 332222223322 789999997543
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.44 E-value=6.6e-08 Score=93.88 Aligned_cols=57 Identities=19% Similarity=0.277 Sum_probs=36.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCC------CC-CCCCC--ceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQ------FS-QDMIP--TVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~------~~-~~~~p--Tig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
+..+|+++|.+|||||||+|++.+.. .. ....| |.......+..+ +.++||||....
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~ 224 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINH 224 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCT
T ss_pred ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcH
Confidence 34689999999999999999998752 11 11222 222222222222 789999997543
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=98.26 E-value=7.1e-06 Score=83.12 Aligned_cols=23 Identities=43% Similarity=0.536 Sum_probs=20.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIA 41 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~ 41 (329)
+...|+++|.+||||||+++++.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999998
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.22 E-value=8.2e-06 Score=81.16 Aligned_cols=56 Identities=16% Similarity=0.317 Sum_probs=34.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCC----CCCceeeeEEE--eeCc--eEEEEEEecCCCc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQD----MIPTVGFNMRK--ITKG--NVTIKVWDIGGQP 76 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~----~~pTig~~~~~--i~~~--~~~l~I~DtpG~e 76 (329)
++++|+|++|+|||||+|.+.+..+... ..+........ +... ...+.++|++|..
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g 106 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFG 106 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCC
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhh
Confidence 5699999999999999999998654211 11211111111 1222 2368899999864
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.4e-05 Score=74.24 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
+++++++|++|+|||||+|.+.+.
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999999863
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.12 E-value=2.8e-06 Score=79.50 Aligned_cols=60 Identities=15% Similarity=0.247 Sum_probs=36.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCceeeeEEEeeCceEEEEEEecCCCcc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVGFNMRKITKGNVTIKVWDIGGQPR 77 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~ 77 (329)
.++.++|+++|.||||||||+|++.+.... ....|.+......+.. +..+.++||||...
T Consensus 117 ~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~~ 177 (282)
T 1puj_A 117 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-GKELELLDTPGILW 177 (282)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE-TTTEEEEECCCCCC
T ss_pred CCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe-CCCEEEEECcCcCC
Confidence 356789999999999999999999987632 2222221111111111 12578999999653
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=1.8e-06 Score=79.96 Aligned_cols=56 Identities=20% Similarity=0.289 Sum_probs=35.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeee--EEEeeCceEEEEEEecCCCccc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFN--MRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~--~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
++++++|.+|||||||+|++.+..... ..++.|.. ...+.. +..+.+|||||....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSL-ENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEEC-TTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEe-CCCEEEEECCCcccC
Confidence 699999999999999999999876531 12222221 111221 125789999997643
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.00 E-value=4.8e-06 Score=80.71 Aligned_cols=89 Identities=17% Similarity=0.137 Sum_probs=64.8
Q ss_pred CCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHH
Q psy2970 74 GQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELH 153 (329)
Q Consensus 74 G~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~ 153 (329)
.+++|+..+..+.+.++.++ +|+|++|+. ..|..
T Consensus 55 ~~e~f~~~l~~i~~~~~~il-----------------------------------------~VvD~~d~~-----~~~~~ 88 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVV-----------------------------------------KIVDIFDFN-----GSWLP 88 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEE-----------------------------------------EEEETTSHH-----HHCCT
T ss_pred CHHHHHHHHHHHhccCcEEE-----------------------------------------EEEECCCCc-----ccHHH
Confidence 46889999999999999999 999999853 22322
Q ss_pred HHHhCCcCCCCcEEEEEEcCCCCChh----hHH----HHHHHhCC---cEEEEeccchHHHHHHhhhh
Q psy2970 154 ALIEKPQLIGIPILVLGNKRDLPNAL----DEK----ELIDRIMI---DFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 154 ~i~~~~~~~~iPIiLVgNK~Dl~~~~----e~~----~l~~~~~~---~~~etSAk~~~~~~~~l~~i 210 (329)
++.+. ..+.|+++|+||+|+.+.. +.+ +++++.+. +++++||+++.+.+++++.+
T Consensus 89 ~l~~~--~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l 154 (368)
T 3h2y_A 89 GLHRF--VGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAI 154 (368)
T ss_dssp THHHH--SSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHH--hCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhh
Confidence 23222 2378999999999996542 233 33666777 79999999987778777666
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=97.88 E-value=7.3e-06 Score=79.41 Aligned_cols=89 Identities=20% Similarity=0.197 Sum_probs=63.7
Q ss_pred CCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHH
Q psy2970 74 GQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELH 153 (329)
Q Consensus 74 G~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~ 153 (329)
.+++|+....++++.++.++ +|+|++++++ .+...+.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil-----------------------------------------~VvD~~d~~~--s~~~~l~ 93 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVV-----------------------------------------NIVDIFDFNG--SFIPGLP 93 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEE-----------------------------------------EEEETTCSGG--GCCSSHH
T ss_pred CHHHHHHHHHHhhccCcEEE-----------------------------------------EEEECCCCCC--chhhHHH
Confidence 58899999999989999999 9999999763 1111222
Q ss_pred HHHhCCcCCCCcEEEEEEcCCCCCh----hhHH----HHHHHhCC---cEEEEeccchHHHHHHhhhh
Q psy2970 154 ALIEKPQLIGIPILVLGNKRDLPNA----LDEK----ELIDRIMI---DFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 154 ~i~~~~~~~~iPIiLVgNK~Dl~~~----~e~~----~l~~~~~~---~~~etSAk~~~~~~~~l~~i 210 (329)
+. ..+.|+++|+||+|+.+. ...+ +..++.+. +++.+||+++.+.+++++.+
T Consensus 94 ~~-----l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I 156 (369)
T 3ec1_A 94 RF-----AADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAI 156 (369)
T ss_dssp HH-----CTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHH
T ss_pred HH-----hCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHH
Confidence 22 236899999999999654 1222 23556676 68999999977777777666
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00011 Score=72.50 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
+...+.++|++|+|||||+|.+.+-
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 4568999999999999999999983
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.71 E-value=3.3e-05 Score=72.18 Aligned_cols=91 Identities=13% Similarity=0.048 Sum_probs=59.0
Q ss_pred EEecCCCc-cccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHH
Q psy2970 69 VWDIGGQP-RFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEA 147 (329)
Q Consensus 69 I~DtpG~e-~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~ 147 (329)
|-+.||+. .........++.+|.++ .|+|+.++.+...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl-----------------------------------------~VvDAr~p~~~~~ 41 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVY-----------------------------------------ELVDARIPMSSRN 41 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEE-----------------------------------------EEEETTSTTTTSC
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEE-----------------------------------------EEEeCCCCCccCC
Confidence 44578875 33445566788999999 9999999876542
Q ss_pred HHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhHHHHHH---HhCCcEEEEeccchHHHHHHh
Q psy2970 148 SRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELID---RIMIDFWITLTLLIRWCESFL 207 (329)
Q Consensus 148 ~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~~l~~---~~~~~~~etSAk~~~~~~~~l 207 (329)
..+.+++ .+.|+++|+||+|+.+....+.+.+ +.+++++.+||++....+++.
T Consensus 42 --~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~ 97 (282)
T 1puj_A 42 --PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIV 97 (282)
T ss_dssp --HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTTGGGHH
T ss_pred --HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcEEEEECCCcccHHHHH
Confidence 1122332 4689999999999988655444444 447899999999854444443
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=97.70 E-value=5.3e-05 Score=75.20 Aligned_cols=23 Identities=43% Similarity=0.501 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
...|+++|.+||||||+++.+..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999865
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=5e-05 Score=78.38 Aligned_cols=69 Identities=20% Similarity=0.234 Sum_probs=45.8
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCC-----CCCceeeeEEEe---eCceEEEEEEecCCCcc
Q psy2970 8 ILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQD-----MIPTVGFNMRKI---TKGNVTIKVWDIGGQPR 77 (329)
Q Consensus 8 ~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~-----~~pTig~~~~~i---~~~~~~l~I~DtpG~e~ 77 (329)
.+..+..+ ......|+|+|.||||||||+|++++....-. ...|.|...... ...+..+.++||||...
T Consensus 27 al~~L~~i-~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 27 ALKILSAI-TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp HHHHHHTC-CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred HHHHHHhc-cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 44455554 45568899999999999999999998763211 123334432211 23456789999999754
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00058 Score=68.15 Aligned_cols=57 Identities=12% Similarity=-0.085 Sum_probs=34.9
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh-hhHHHHHHHhCCcEEEEecc
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-LDEKELIDRIMIDFWITLTL 198 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~-~e~~~l~~~~~~~~~etSAk 198 (329)
+|+|.+....- ......+.+. -.+..||.||.|.... -.+..+....+.|...++.-
T Consensus 218 LVvDA~~gq~a---~~~a~~f~~~----~~i~gVIlTKlD~~~~gG~~ls~~~~~g~PI~fig~G 275 (443)
T 3dm5_A 218 LVIDGTIGQQA---YNQALAFKEA----TPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTG 275 (443)
T ss_dssp EEEEGGGGGGH---HHHHHHHHHS----CTTEEEEEECCSSCSSHHHHHHHHHTTCCCEEEEECS
T ss_pred EEEeCCCchhH---HHHHHHHHhh----CCCeEEEEECCCCcccccHHHHHHHHHCCCEEEEEcC
Confidence 99998754322 2222333222 1345689999999765 33556667788887766653
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=97.51 E-value=2.7e-05 Score=77.30 Aligned_cols=78 Identities=17% Similarity=0.173 Sum_probs=45.8
Q ss_pred cCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCcc--ccchH------
Q psy2970 15 LFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPR--FRSMW------ 82 (329)
Q Consensus 15 ~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~--~~~~~------ 82 (329)
.+.++..+|+++|.+|+||||+.+++...-.. ...+|.+..... ..+......+||..|++. .+..+
T Consensus 34 ~~~~~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~ 112 (469)
T 1bif_A 34 CMTNCPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALN 112 (469)
T ss_dssp ----CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHH
T ss_pred cCCCCcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999764221 123444433211 112224456899999743 33333
Q ss_pred --HHHhhccceeE
Q psy2970 83 --ERYCRGVNAIV 93 (329)
Q Consensus 83 --~~~~~~ad~iI 93 (329)
..++..+++.+
T Consensus 113 ~~~~~l~~~~G~~ 125 (469)
T 1bif_A 113 DVRKFLSEEGGHV 125 (469)
T ss_dssp HHHHHHHTTCCSE
T ss_pred HHHHHHHhCCCCE
Confidence 44555566666
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0014 Score=61.71 Aligned_cols=55 Identities=9% Similarity=-0.072 Sum_probs=34.0
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCCcCCCCc-EEEEEEcCCCCCh-hhHHHHHHHhCCcEEEEec
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKPQLIGIP-ILVLGNKRDLPNA-LDEKELIDRIMIDFWITLT 197 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iP-IiLVgNK~Dl~~~-~e~~~l~~~~~~~~~etSA 197 (329)
+|+|.+... +.....+.+.+ ..| ..+|.||.|.... ..+.++....+.|...++.
T Consensus 218 lVvda~~g~---~~~~~~~~~~~-----~~~i~gvVlnk~D~~~~~g~~~~~~~~~~~pi~~i~~ 274 (297)
T 1j8m_F 218 LVIDASIGQ---KAYDLASKFNQ-----ASKIGTIIITKMDGTAKGGGALSAVAATGATIKFIGT 274 (297)
T ss_dssp EEEEGGGGG---GHHHHHHHHHH-----TCTTEEEEEECGGGCTTHHHHHHHHHTTTCCEEEEEC
T ss_pred EEeeCCchH---HHHHHHHHHHh-----hCCCCEEEEeCCCCCcchHHHHHHHHHHCcCEEEEeC
Confidence 899986432 22222333322 245 6789999998654 3356677888888777653
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0008 Score=66.92 Aligned_cols=57 Identities=14% Similarity=-0.091 Sum_probs=35.7
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh-hhHHHHHHHhCCcEEEEecc
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-LDEKELIDRIMIDFWITLTL 198 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~-~e~~~l~~~~~~~~~etSAk 198 (329)
+|+|.+.-..-.+....+.+. -.+..||.||.|.... -.+-.+....+.|...++.-
T Consensus 217 LVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKlD~~a~~G~als~~~~~g~Pi~fig~G 274 (433)
T 3kl4_A 217 LVIDASIGQKAYDLASRFHQA-------SPIGSVIITKMDGTAKGGGALSAVVATGATIKFIGTG 274 (433)
T ss_dssp EEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECGGGCSCHHHHHHHHHHHTCEEEEEECC
T ss_pred EEEeCccchHHHHHHHHHhcc-------cCCcEEEEecccccccchHHHHHHHHHCCCEEEEECC
Confidence 999987543333333333322 1346789999998754 33556677789987766654
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00068 Score=69.81 Aligned_cols=23 Identities=22% Similarity=0.471 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~ 44 (329)
.|+|+|++|+|||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999998864
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00039 Score=64.22 Aligned_cols=69 Identities=14% Similarity=-0.040 Sum_probs=49.9
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhHHHH---HHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKEL---IDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~~l---~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.|+|+.++.+..... +. + . ++|.++|+||+|+.+....+++ .++.+.+. .+||++....+++.+.+.
T Consensus 27 ~VvDar~P~~~~~~~--l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v-~iSa~~~~gi~~L~~~l~ 96 (262)
T 3cnl_A 27 EVRDARAPFATSAYG--VD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV-ITTHKGEPRKVLLKKLSF 96 (262)
T ss_dssp EEEETTSTTTTSCTT--SC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-EECCTTSCHHHHHHHHCC
T ss_pred EEeeCCCCCcCcChH--HH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-EEECCCCcCHHHHHHHHH
Confidence 999999886543211 11 1 1 7899999999999886544443 34457888 999999888888887776
Q ss_pred CC
Q psy2970 212 SH 213 (329)
Q Consensus 212 ~~ 213 (329)
..
T Consensus 97 ~~ 98 (262)
T 3cnl_A 97 DR 98 (262)
T ss_dssp CT
T ss_pred Hh
Confidence 54
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0014 Score=62.55 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+.--++++|++||||||+++.+.+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999875
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.013 Score=50.09 Aligned_cols=57 Identities=11% Similarity=-0.017 Sum_probs=35.8
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCC-cCCCCcEEEEEEcCCCCCh--hhHHHHHHHhCCcEE
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKP-QLIGIPILVLGNKRDLPNA--LDEKELIDRIMIDFW 193 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~-~~~~iPIiLVgNK~Dl~~~--~e~~~l~~~~~~~~~ 193 (329)
++++.+.. + ......+..+.+.. ...+.++.+|.||.|.... .+..+..++++.+++
T Consensus 103 iv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~~~~~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 103 IPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMATMLNVLKESIKDTGVKAF 162 (206)
T ss_dssp EEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEEEEHHHHHHHHHHTCCBC
T ss_pred EEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCchHHHHHHHHHHHcCCcee
Confidence 88876543 3 55555555443321 1345778999999996543 456666777787765
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0014 Score=62.15 Aligned_cols=76 Identities=17% Similarity=0.128 Sum_probs=48.9
Q ss_pred ceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhh----HHHHHH---HhCCcEEEEeccchHHH
Q psy2970 131 QLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD----EKELID---RIMIDFWITLTLLIRWC 203 (329)
Q Consensus 131 ~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e----~~~l~~---~~~~~~~etSAk~~~~~ 203 (329)
|.+++|+|+.+|..-....+-+....+ ..++|.+||.||+|+.++.+ .+++.+ ..|.+.+.+||++....
T Consensus 88 D~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~ 164 (307)
T 1t9h_A 88 DQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSL 164 (307)
T ss_dssp CEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTTC
T ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCCCH
Confidence 334499999877543333222222222 35789999999999987633 445554 45789999999886655
Q ss_pred HHHhhh
Q psy2970 204 ESFLHH 209 (329)
Q Consensus 204 ~~~l~~ 209 (329)
++++..
T Consensus 165 ~~L~~~ 170 (307)
T 1t9h_A 165 ADIIPH 170 (307)
T ss_dssp TTTGGG
T ss_pred HHHHhh
Confidence 555443
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0019 Score=60.97 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.--|+++|++||||||+++.+.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 45789999999999999999964
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0021 Score=64.18 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=40.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC------------------CCC---CCCCCceeeeEEE-------eeCceEEEEEE
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG------------------QFS---QDMIPTVGFNMRK-------ITKGNVTIKVW 70 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~------------------~~~---~~~~pTig~~~~~-------i~~~~~~l~I~ 70 (329)
+-.-|.|+|++++|||||+|++++. .|. +....|.|+-... .++.+..+.+.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvll 145 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEE
Confidence 4456889999999999999999853 222 1222344543331 13456889999
Q ss_pred ecCCCccc
Q psy2970 71 DIGGQPRF 78 (329)
Q Consensus 71 DtpG~e~~ 78 (329)
||+|..+.
T Consensus 146 DTeG~~~~ 153 (447)
T 3q5d_A 146 DTQGTFDS 153 (447)
T ss_dssp EEECCCSS
T ss_pred cCCccccc
Confidence 99997543
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.022 Score=56.37 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIA 41 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~ 41 (329)
...|+++|.+||||||++..+.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578889999999999999986
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.005 Score=62.34 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+.--++|+|.+|||||||++.+.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 345789999999999999999864
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0035 Score=54.73 Aligned_cols=38 Identities=26% Similarity=0.330 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 4 LLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 4 ~~~~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
++..+...+... .++...|.|+|++|+|||||++.+.+
T Consensus 7 ~~~~~~~~~~~~-~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPR-QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTT-CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhc-CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 333444444333 35667899999999999999999876
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0028 Score=54.95 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
++++++|++|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999764
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0047 Score=52.30 Aligned_cols=38 Identities=24% Similarity=0.183 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 6 NRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 6 ~~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
..+..+..++.-.+.-.++++|++|+|||||++.+.+.
T Consensus 24 ~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 24 LTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp HHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 44455555554444567999999999999999998753
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0031 Score=53.91 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
-++|+|++|||||||++.+.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999864
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0072 Score=57.12 Aligned_cols=58 Identities=10% Similarity=-0.011 Sum_probs=34.0
Q ss_pred EEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh-hhHHHHHHHhCCcEEEEecc
Q psy2970 134 KYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-LDEKELIDRIMIDFWITLTL 198 (329)
Q Consensus 134 ~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~-~e~~~l~~~~~~~~~etSAk 198 (329)
++|+|.+.. .+.......+.+. .++ .-+|.||.|.... -.+.++....+.|...+..-
T Consensus 227 llVlda~t~---~~~l~~a~~~~~~---~~i-~gvVlTk~D~~~~gG~~l~~~~~~~~Pi~~i~~G 285 (306)
T 1vma_A 227 LLVIDATTG---QNGLVQAKIFKEA---VNV-TGIILTKLDGTAKGGITLAIARELGIPIKFIGVG 285 (306)
T ss_dssp EEEEEGGGH---HHHHHHHHHHHHH---SCC-CEEEEECGGGCSCTTHHHHHHHHHCCCEEEEECS
T ss_pred EEEEECCCC---HHHHHHHHHHHhc---CCC-CEEEEeCCCCccchHHHHHHHHHHCCCEEEEeCC
Confidence 388898632 2222222333221 222 2466799997554 34778888999987776553
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.025 Score=53.61 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=19.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.--|+++|.+|+||||++..+..
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34588999999999999999853
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0055 Score=51.98 Aligned_cols=25 Identities=32% Similarity=0.288 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
+.-.|+++|++|+|||||++.+.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3456999999999999999999875
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0041 Score=54.23 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
-.++|+|++|+|||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999976
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0046 Score=52.93 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
--++++|++|||||||++.+.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 45899999999999999999874
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.013 Score=50.87 Aligned_cols=39 Identities=23% Similarity=0.266 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 4 LLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 4 ~~~~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
++..+.+...+....+..-|.++|.+|+||||+++.+.+
T Consensus 6 ~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 6 RIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 455566666655445667899999999999999999865
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0069 Score=49.62 Aligned_cols=20 Identities=25% Similarity=0.569 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q psy2970 21 MELTLVGLQCSGKTTFVNVI 40 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l 40 (329)
+-|++.|++||||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0076 Score=53.87 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIA 41 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~ 41 (329)
+...|+|+|++||||||+++.+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999998
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.52 E-value=0.013 Score=48.19 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
..-.+++.|++|+|||++++.+...
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 4467999999999999999998753
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0075 Score=52.79 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
++.+.|+|.|.+||||||+.+.+..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4568899999999999999999865
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.006 Score=51.87 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q psy2970 21 MELTLVGLQCSGKTTFVNVIA 41 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~ 41 (329)
=-++++|++|+|||||++.+.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 357899999999999999865
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0067 Score=52.91 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
=-++|+|++|+|||||++.+.+-
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35789999999999999999874
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=95.47 E-value=0.021 Score=56.48 Aligned_cols=23 Identities=48% Similarity=0.395 Sum_probs=19.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.--|+++|.+|+||||++..+..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34588889999999999999863
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0077 Score=49.75 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
.|+|.|.+||||||+.+.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999965
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0078 Score=52.67 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
+.--|+|+|++||||||+++.+.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34468999999999999999998753
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0099 Score=49.46 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
..|++.|.+||||||+.+++..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999986
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0077 Score=53.34 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
.-.++|+|++|+|||||++.+.+-.
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3468899999999999999998743
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0085 Score=49.92 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
..|+|+|++||||||+.+.+.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999763
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0099 Score=50.79 Aligned_cols=26 Identities=23% Similarity=0.228 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
+...|+|+|++||||||+++.+.+.-
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34578999999999999999998753
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0081 Score=53.82 Aligned_cols=25 Identities=12% Similarity=0.209 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
.--++|+|++|||||||++.+.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3468899999999999999998743
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0084 Score=52.05 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
..-|+|+|++||||||+++++...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999999753
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.01 Score=51.30 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=21.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
++...|.|+|++|+|||||++.+.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4556799999999999999999876
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.0094 Score=51.71 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999964
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.01 Score=51.60 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999964
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.21 E-value=0.0093 Score=53.06 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
--|+|+|++|||||||++.+.+.
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 46889999999999999999864
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=95.21 E-value=0.0095 Score=50.69 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
-++++|++|+||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.093 Score=45.88 Aligned_cols=55 Identities=9% Similarity=-0.030 Sum_probs=34.6
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC-h--hhHHHHHHHhCCcEE
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN-A--LDEKELIDRIMIDFW 193 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~-~--~e~~~l~~~~~~~~~ 193 (329)
++.+.+ ..+.......+..+.+. .+.++.+|.|+.|... . .+..+..++++.+++
T Consensus 96 iv~~~~-~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~~~~~~~~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 96 IPSTPD-ALALDALMLTIETLQKL---GNNRFRILLTIIPPYPSKDGDEARQLLTTAGLPLF 153 (209)
T ss_dssp EEECSS-HHHHHHHHHHHHHHHHT---CSSSEEEEECSBCCTTSCHHHHHHHHHHHTTCCBC
T ss_pred EEecCC-chhHHHHHHHHHHHHhc---cCCCEEEEEEecCCccchHHHHHHHHHHHcCCchh
Confidence 777754 44556666655555432 1567889999999875 3 345555556777655
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.012 Score=49.64 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+...|++.|.+||||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999865
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.013 Score=49.40 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+...|++.|.+||||||+.+.+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999974
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.011 Score=50.18 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
+.|++.|.+||||||+.+.+..
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCccCHHHHHHHHHH
Confidence 3689999999999999999975
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=95.16 E-value=0.011 Score=52.09 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~ 43 (329)
|+|+|++|||||||++++...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999754
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=95.14 E-value=0.012 Score=49.51 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
...|++.|.+||||||+.+.+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999865
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.013 Score=51.03 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
...|.++|++||||||+.+.+.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=95.09 E-value=0.014 Score=50.14 Aligned_cols=27 Identities=26% Similarity=0.230 Sum_probs=23.4
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 16 FWKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 16 ~~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
...+.+.|+|.|.+||||||+.+.+..
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345678999999999999999999865
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.05 E-value=0.013 Score=49.18 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
.|+|.|.+||||||+.+.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999965
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.012 Score=49.29 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.-|++.|.+||||||+.+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999763
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.016 Score=49.53 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
...|++.|.+||||||+.+.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999975
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.015 Score=50.34 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+.-.|+|+|++|+||||+++.+.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999975
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=0.017 Score=48.31 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
...|+++|++|+||||+.+.+.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999999865
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.019 Score=47.33 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
...-.+++.|++|+|||++++.+..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999999865
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.013 Score=50.42 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
...|+|.|.+||||||+.+.|...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999998653
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.014 Score=50.05 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
..|+|+|.+||||||+.+.+.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999987
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=94.84 E-value=0.014 Score=49.75 Aligned_cols=27 Identities=26% Similarity=0.307 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
++.--++++|+.|+|||||++.+.+..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344468999999999999999998754
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.84 E-value=0.017 Score=48.52 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
...|++.|.+||||||+.+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999865
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.017 Score=51.89 Aligned_cols=25 Identities=24% Similarity=0.213 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
++.+.|+|.|++||||||+.++|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999964
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.014 Score=50.59 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.=-++|+|++|+|||||++.+.+.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999999873
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.79 E-value=0.019 Score=48.98 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.+...|+|+|.+||||||+.+.+...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 35578999999999999999999764
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=94.78 E-value=0.015 Score=50.69 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
++|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999965
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.017 Score=49.85 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+.-.|+++|++||||||+.+.+..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 345799999999999999999975
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.014 Score=52.64 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.+.++|++|+|||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5889999999999999998763
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.018 Score=49.08 Aligned_cols=25 Identities=32% Similarity=0.290 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
+...|+|.|.+||||||+.+.+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999764
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=94.74 E-value=0.066 Score=51.80 Aligned_cols=79 Identities=14% Similarity=0.027 Sum_probs=49.1
Q ss_pred hhhcceeEEEEECCCcccHHH-HHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhh---HHHHHH---HhCCcEEEEeccc
Q psy2970 127 SLLFQLIKYMVDAADTDKLEA-SRNELHALIEKPQLIGIPILVLGNKRDLPNALD---EKELID---RIMIDFWITLTLL 199 (329)
Q Consensus 127 ~~~~~~~~lV~Dvt~~~S~~~-~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e---~~~l~~---~~~~~~~etSAk~ 199 (329)
..-.+.+++|... +|..-.+ +..++... + ..++|.+||+||+|+.+..+ .+++.. ..|++.+.+||++
T Consensus 128 ~anvD~v~iv~a~-~P~~~~~~i~r~L~~a-~---~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 128 AANIDQIVIVSAI-LPELSLNIIDRYLVGC-E---TLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EECCCEEEEEEES-TTTCCHHHHHHHHHHH-H---HHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HhcCCEEEEEEeC-CCCCCHHHHHHHHHHH-H---hcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3445667777554 5643333 22222222 1 24678899999999987644 334443 4578999999999
Q ss_pred hHHHHHHhhhh
Q psy2970 200 IRWCESFLHHF 210 (329)
Q Consensus 200 ~~~~~~~l~~i 210 (329)
....+.+...+
T Consensus 203 ~~gl~~L~~~~ 213 (358)
T 2rcn_A 203 QDGLKPLEEAL 213 (358)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHHhc
Confidence 76666665544
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=94.73 E-value=0.018 Score=48.65 Aligned_cols=24 Identities=29% Similarity=0.228 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+...|++.|.+||||||+.+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999964
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.23 Score=40.57 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 6 NRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 6 ~~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
..+....+... .....|++.|++|+|||++.+.+....
T Consensus 11 ~~~~~~~~~~a-~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 11 NQYRRRLQQLS-ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp HHHHHHHHHHT-TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred HHHHHHHHHHh-CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 33444444332 355689999999999999999997643
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=94.71 E-value=0.016 Score=56.24 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
-.++++|++|||||||+|.+.+..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 368999999999999999999754
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=94.69 E-value=0.015 Score=52.02 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.+.++|++|+|||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998764
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=94.68 E-value=0.017 Score=51.35 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
+.|+++|+|||||+|...++..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999975
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.67 E-value=0.022 Score=51.57 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 3 VLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 3 ~~~~~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.|+..+..|++.. .+.-.+++.|+||+|||+++.++..
T Consensus 43 ~f~~~l~~~~~~i--Pkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 43 TFLGALKSFLKGT--PKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHHHTC--TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CcccEEEEECCCCCCHHHHHHHHHH
Confidence 3566666666653 2344599999999999999888865
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.018 Score=50.62 Aligned_cols=24 Identities=25% Similarity=0.345 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+...|+|.|.+||||||+.+.+..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999975
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.64 E-value=0.019 Score=47.55 Aligned_cols=22 Identities=36% Similarity=0.773 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
++|++.|.+||||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999965
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.019 Score=48.43 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
...|+++|++||||||+.+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999964
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.021 Score=49.00 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
++...|+|.|.+||||||+.+.|..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999975
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=94.58 E-value=0.023 Score=49.11 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.+.--|+++|++|+||||+.+.+.+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999999865
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=94.55 E-value=0.019 Score=52.17 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.+.++|++|+|||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.024 Score=48.91 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
++...|.++|.+|+||||+.+.+.+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34567999999999999999999874
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.021 Score=49.03 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+...|+|.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999965
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.51 E-value=0.023 Score=48.91 Aligned_cols=22 Identities=36% Similarity=0.394 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
+.|.++|++||||||+.+.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=94.45 E-value=0.046 Score=50.67 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.+..-|++.|++||||||+.+++..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457799999999999999999975
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=94.45 E-value=0.017 Score=53.79 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
--++++|++|||||||+|.+.+..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 468899999999999999998744
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=94.44 E-value=0.019 Score=52.71 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
-+.++|++|+|||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999774
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.019 Score=51.88 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.++++|++|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999999764
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=94.43 E-value=0.018 Score=50.32 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+...|+|.|.+||||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999999965
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.013 Score=51.65 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=15.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHH-cC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIA-SG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~-~~ 43 (329)
--++|+|++|+||||+++.+. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 458899999999999999998 54
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=94.39 E-value=0.019 Score=52.35 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.+.++|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999774
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=94.36 E-value=0.019 Score=50.34 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
.+.++|++|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 478999999999999999876
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=94.36 E-value=0.022 Score=51.45 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
=.++++|++|+|||||++.+.+-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.35 E-value=0.028 Score=47.63 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.+...|++.|.+|+||||+.+.+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3567899999999999999999865
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.34 E-value=0.027 Score=47.86 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.+...|+|.|.+||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999999875
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=94.32 E-value=0.021 Score=51.02 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.++++|+.|+|||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999774
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=94.31 E-value=0.049 Score=50.84 Aligned_cols=26 Identities=27% Similarity=0.106 Sum_probs=22.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.++...|.|+|++|||||||++.+.+
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35678899999999999999998864
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.021 Score=52.41 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=21.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
++.=.++++|++|+|||||++.+.+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHH
Confidence 3445799999999999999999976
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=94.29 E-value=0.021 Score=53.03 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
-++++|++|+|||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999774
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.29 E-value=0.024 Score=47.62 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999965
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=94.28 E-value=0.022 Score=51.11 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.++++|+.|+|||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.022 Score=53.22 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q psy2970 21 MELTLVGLQCSGKTTFVNVIA 41 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~ 41 (329)
--++++|++|||||||+|.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999998
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=94.26 E-value=0.024 Score=51.62 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.++++|++|+|||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999999774
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.023 Score=51.59 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.+.++|++|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999885
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=94.24 E-value=0.023 Score=49.23 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
--++++|++|+|||||++++...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 35889999999999999999864
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=94.24 E-value=0.022 Score=51.46 Aligned_cols=22 Identities=41% Similarity=0.481 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.+.++|+.|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.039 Score=49.69 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.+...|+++|.+||||||+.+.+...
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 44578999999999999999999753
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.022 Score=52.46 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.+.++|++|+|||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999999874
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.025 Score=49.56 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+.+.|+|.|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999865
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=94.20 E-value=0.034 Score=47.66 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
++...|+|.|.+||||||+.+.+..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999999999975
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=94.20 E-value=0.022 Score=47.89 Aligned_cols=21 Identities=29% Similarity=0.607 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
+|+++|.+||||||+.+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 599999999999999999865
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.19 E-value=0.051 Score=45.68 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
.+++.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999875
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.17 E-value=0.051 Score=51.71 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=22.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.++.+-|.++|++|||||||++.+.+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45567899999999999999999864
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.16 E-value=0.021 Score=48.40 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
...|++.|.+||||||+.+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999975
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.03 Score=50.05 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
++..-|.|+|+.|+|||||++.+.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3556799999999999999999876
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=94.15 E-value=0.024 Score=52.30 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.+.++|++|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 5789999999999999999774
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=94.13 E-value=0.026 Score=51.94 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.++|+|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999885
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=94.13 E-value=0.024 Score=51.76 Aligned_cols=22 Identities=36% Similarity=0.449 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.++++|+.|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999999774
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=94.12 E-value=0.035 Score=47.86 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
..-.+++.|++|+|||++++.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999865
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=94.11 E-value=0.025 Score=48.64 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
--++++|++|+|||||++.+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3578899999999999999985
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=94.09 E-value=0.025 Score=51.89 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.+.++|+.|+|||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999874
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=94.08 E-value=0.029 Score=49.48 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
+.|++.|.+||||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999865
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=94.08 E-value=0.009 Score=56.64 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
.-.++++|++|||||||+|.+.+..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCEEEEECCCCCCHHHHHHHhcccc
Confidence 3478999999999999999998643
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=94.05 E-value=0.027 Score=47.44 Aligned_cols=23 Identities=35% Similarity=0.336 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
...|++.|.+|+||||+.+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45699999999999999999874
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=94.04 E-value=0.025 Score=52.19 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.++|+|++|+|||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999774
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.028 Score=51.54 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.++++|++|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6889999999999999999874
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.021 Score=50.69 Aligned_cols=22 Identities=27% Similarity=0.113 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.+.++|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999875
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=94.02 E-value=0.032 Score=49.39 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=22.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
..+...|++.|.+||||||+.+.|..
T Consensus 13 ~~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 13 SPKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999965
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=0.027 Score=53.34 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=21.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
++.=.++|+|++|+|||||++.+.+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhh
Confidence 3445799999999999999999975
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=0.035 Score=46.48 Aligned_cols=23 Identities=26% Similarity=0.159 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
...|++.|.+||||||+.+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999865
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=94.00 E-value=0.027 Score=50.19 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.++++|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999863
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.027 Score=51.49 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.+.++|++|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=93.96 E-value=0.023 Score=47.62 Aligned_cols=24 Identities=17% Similarity=0.105 Sum_probs=16.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+...|++.|.+||||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999964
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=93.95 E-value=0.064 Score=45.83 Aligned_cols=22 Identities=36% Similarity=0.336 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
-.+++.|++|+|||+|++.+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999875
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.92 E-value=0.028 Score=51.66 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.+.++|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999999774
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=93.91 E-value=0.034 Score=52.41 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
++..-|.|+|++|||||||++.+.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 5567899999999999999999876
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=93.90 E-value=0.024 Score=53.95 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.-+++|+|++|+|||||++.+.+-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999874
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=93.90 E-value=0.03 Score=51.95 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.++|+|+.|+|||||++.+.+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999999774
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=93.85 E-value=0.039 Score=47.96 Aligned_cols=24 Identities=33% Similarity=0.326 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+.+.|+|.|.+||||||+.+.+..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999975
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=93.81 E-value=0.04 Score=46.38 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+...|++.|.+|+||||+.+.+.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999876
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=93.79 E-value=0.04 Score=49.91 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
...|++.|.+||||||+.+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.76 E-value=0.03 Score=51.48 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~ 43 (329)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999873
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=93.72 E-value=0.014 Score=50.20 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
-|+|.|.+||||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999865
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=93.70 E-value=0.036 Score=45.94 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
.|++.|.+||||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
|
| >3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=93.69 E-value=0.67 Score=43.59 Aligned_cols=73 Identities=11% Similarity=0.025 Sum_probs=44.4
Q ss_pred ceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEE-EEEEcCCCCChhhHHHHHHHhCCcEEEEeccchHHHHHH
Q psy2970 131 QLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPIL-VLGNKRDLPNALDEKELIDRIMIDFWITLTLLIRWCESF 206 (329)
Q Consensus 131 ~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIi-LVgNK~Dl~~~~e~~~l~~~~~~~~~etSAk~~~~~~~~ 206 (329)
+-++++.. .+..+++.+...++.+.......+.++. +|.|+.+.. .+.++++++++.+++..-....++.++-
T Consensus 188 d~viIvt~-~e~~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~~--~~v~~~a~~~~~~~lg~IP~d~~Vr~a~ 261 (314)
T 3fwy_A 188 DQAVVVTA-NDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT--DEVDRFCKETNFRRLAHMPDLDAIRRSR 261 (314)
T ss_dssp SEEEEEEC-SSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC--HHHHHHHHHHTCCEEEEECCCHHHHHHH
T ss_pred CeEEEEeC-CcHHHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCch--hHHHHHHHHhCCeEEEEecCchHHHHHH
Confidence 33444444 3455666666666555443333445543 577887654 4567889999999887766666555543
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=93.62 E-value=0.037 Score=51.00 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~ 44 (329)
.++++|++|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=93.61 E-value=0.079 Score=44.88 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
-+++.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=93.58 E-value=0.036 Score=47.57 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.--++++|++|+|||||+.++..
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999987
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.53 E-value=0.077 Score=46.83 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.-.+++.|++|+|||++++.+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999999976
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=93.52 E-value=0.02 Score=49.51 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
.+.|+|++|+|||||++.+.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999976
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=93.51 E-value=0.039 Score=46.52 Aligned_cols=21 Identities=43% Similarity=0.526 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.029 Score=47.00 Aligned_cols=24 Identities=13% Similarity=0.183 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.-.++++|++|+|||||++.+.+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999999763
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=93.48 E-value=0.047 Score=49.26 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHH
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIA 41 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~ 41 (329)
.+...|.|+|++|+||||+.+.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999997
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=93.44 E-value=0.038 Score=53.24 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.-.++++|++|+||||+++.+.+
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34899999999999999999876
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=93.43 E-value=0.039 Score=50.03 Aligned_cols=21 Identities=38% Similarity=0.477 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
-|+|+|++|||||||.+++..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999964
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=93.39 E-value=0.041 Score=47.99 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
+.--++++|++|+|||||+.++...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3446889999999999999999874
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=93.38 E-value=0.037 Score=50.59 Aligned_cols=23 Identities=26% Similarity=0.195 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
=-++|+|++|+|||||++.+.+.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 35889999999999999999764
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=93.33 E-value=0.041 Score=49.95 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.++++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3999999999999999999863
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=93.32 E-value=0.049 Score=50.77 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.+..-|.|+|++|+|||||++.+.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999999876
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=93.23 E-value=0.065 Score=48.24 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
...-.+++.|++|+|||++++.+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34567999999999999999999763
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=93.20 E-value=0.06 Score=51.86 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
++.-.++++|++|+||||+++.+.+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3445799999999999999999976
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=93.20 E-value=0.045 Score=51.20 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.++++|+.|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6789999999999999999774
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=93.15 E-value=0.045 Score=48.79 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.-.+++.|++|+|||++++.+.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 34699999999999999999976
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=93.15 E-value=0.06 Score=46.78 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.+..-|++.|.+|+||||+.+.+..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999865
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=93.14 E-value=0.054 Score=44.99 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
.|+|.|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=93.12 E-value=0.045 Score=53.00 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~ 44 (329)
-++++|++|+|||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 57899999999999999998743
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=93.11 E-value=0.044 Score=51.47 Aligned_cols=22 Identities=41% Similarity=0.516 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.++++|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999999763
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=93.04 E-value=0.11 Score=50.45 Aligned_cols=39 Identities=23% Similarity=0.322 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcCC-CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 4 LLNRILDWFKSLFW-KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 4 ~~~~~~~~~~~~~~-~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
|...++..+..... .+..+|+++|++|+||||+.+.+.+
T Consensus 7 L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 7 LADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp HHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 56667777765443 3456899999999999999998754
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=93.03 E-value=0.046 Score=52.36 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
+.-.++++|++|+|||||++.+.+-
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3457999999999999999999874
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=93.02 E-value=0.052 Score=50.59 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.++|.|++|+||||+++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999764
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=93.02 E-value=0.053 Score=45.54 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
-.+|+|+.|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999854
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=93.01 E-value=0.11 Score=46.78 Aligned_cols=27 Identities=30% Similarity=0.291 Sum_probs=23.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
....-.+++.|++|+|||++++.+...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 445678999999999999999999764
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=93.01 E-value=0.049 Score=52.57 Aligned_cols=23 Identities=39% Similarity=0.479 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~ 44 (329)
-++++|++|+|||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999998743
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=92.99 E-value=0.048 Score=51.19 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.--++++|++||||||+++.+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34688999999999999999975
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.94 E-value=0.051 Score=52.52 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
-++++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 5789999999999999999874
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=92.93 E-value=0.034 Score=52.51 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
=.++|+|++|+|||||++.+.+-
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTS
T ss_pred CEEEEECCCCchHHHHHHHHHcC
Confidence 37899999999999999998763
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=92.91 E-value=0.053 Score=52.48 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~ 44 (329)
-++++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 57899999999999999998743
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=92.89 E-value=0.12 Score=47.05 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=20.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+....+++.|++|+|||++++.+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3455799999999999999987654
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=92.88 E-value=0.058 Score=54.42 Aligned_cols=24 Identities=38% Similarity=0.389 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
...++++|++||||||+++.+.+-
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 345999999999999999999764
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=92.82 E-value=0.075 Score=52.31 Aligned_cols=26 Identities=19% Similarity=0.130 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
++.=-++|+|++|+||||+++.+.+-
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhh
Confidence 34446899999999999999999863
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=92.82 E-value=0.054 Score=52.50 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~ 44 (329)
-++++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999998743
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=92.81 E-value=0.07 Score=47.72 Aligned_cols=24 Identities=33% Similarity=0.360 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+..-|++.|.+||||||+++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999999999975
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=92.81 E-value=0.064 Score=46.52 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
.-+.++|.+|||||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999875
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=92.81 E-value=0.051 Score=48.12 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
++..-|+|.|..|+||||+++.+.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45578999999999999999998764
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=92.78 E-value=0.056 Score=52.75 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~ 44 (329)
-++++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 57899999999999999998743
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=92.76 E-value=0.057 Score=48.50 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=17.8
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy2970 23 LTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~ 42 (329)
|+|+|+|||||+|...++..
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56789999999999999875
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=92.75 E-value=0.057 Score=52.42 Aligned_cols=22 Identities=41% Similarity=0.413 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
-++++|++|+|||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 5789999999999999999874
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=92.74 E-value=0.047 Score=51.74 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.-.++++|++|+|||||++.+.+-
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999874
|
| >4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=92.70 E-value=0.17 Score=50.69 Aligned_cols=60 Identities=18% Similarity=0.250 Sum_probs=39.1
Q ss_pred CceE-EEEEcCCCCCHHHHHHHHHc------------------CCCC---CCCCCceeeeEEE-------eeCceEEEEE
Q psy2970 19 EEME-LTLVGLQCSGKTTFVNVIAS------------------GQFS---QDMIPTVGFNMRK-------ITKGNVTIKV 69 (329)
Q Consensus 19 k~lk-IlllG~~gvGKSSLin~l~~------------------~~~~---~~~~pTig~~~~~-------i~~~~~~l~I 69 (329)
+++. |.|+|..++|||+|+|.+++ ..|. +...-|.|+-+.. -++.+..+.+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll 144 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence 4454 55999999999999996641 2232 1223455654432 1456788999
Q ss_pred EecCCCccc
Q psy2970 70 WDIGGQPRF 78 (329)
Q Consensus 70 ~DtpG~e~~ 78 (329)
.||.|..+.
T Consensus 145 lDTEG~~d~ 153 (457)
T 4ido_A 145 MDTQGTFDS 153 (457)
T ss_dssp EEECCBTCT
T ss_pred EeccCCCCc
Confidence 999996543
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=92.70 E-value=0.069 Score=47.32 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=22.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+.+...|+|+|.+|+||||+.+.+.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45667899999999999999999875
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=92.67 E-value=0.059 Score=52.33 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
-+.++|++|+|||||++.+.+-
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 5789999999999999999874
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=92.66 E-value=0.071 Score=47.79 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=21.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
..+.+.|.|.|.+||||||+.+.|..
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999866
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=92.50 E-value=0.066 Score=48.77 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
.-|++.|.+||||||+.+++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=92.41 E-value=0.074 Score=48.35 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=21.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.+.+.|++.|++|+||||+.+.+..
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999864
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=92.39 E-value=0.08 Score=48.72 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
++.+.|+|.|.+||||||+.+.|..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999973
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=92.38 E-value=0.064 Score=48.70 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.-.+++.|++|+|||++++.+.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 468999999999999999999763
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=92.37 E-value=0.26 Score=40.25 Aligned_cols=25 Identities=16% Similarity=0.048 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
....|++.|++|+|||++.+.+...
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCCcEEEECCCCccHHHHHHHHHHh
Confidence 4567999999999999999988653
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=92.25 E-value=0.054 Score=50.78 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHHcCC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~~ 44 (329)
++|+|..|+|||||++.+.+..
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEecCCCCHHHHHHHHHhhc
Confidence 5788999999999999999753
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=92.24 E-value=0.048 Score=52.42 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~ 44 (329)
-++++|++|+|||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 57899999999999999998743
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=92.23 E-value=0.097 Score=48.52 Aligned_cols=21 Identities=29% Similarity=0.309 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
.+++.|++|+||||+++.+.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999999876
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=92.18 E-value=0.077 Score=46.20 Aligned_cols=22 Identities=27% Similarity=0.218 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
--++++|++|+|||||+.++..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999988864
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.13 E-value=0.072 Score=52.02 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
.+.++|++|+|||||++.+.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 588999999999999999987
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=92.11 E-value=0.071 Score=49.25 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.-.++|.|++|+|||||++.+.+
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999876
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=92.08 E-value=0.17 Score=47.19 Aligned_cols=36 Identities=28% Similarity=0.310 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 7 RILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 7 ~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.+..|....-....-.+++.|++|+|||+|+..+..
T Consensus 139 ~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 139 AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 444555543221246899999999999999999865
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=92.07 E-value=0.16 Score=49.25 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+.-.++++|++|+|||||++.+.+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 445789999999999999999985
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=91.98 E-value=0.12 Score=47.77 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
..-.|++.|++|+|||+|++.+.+.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHH
Confidence 3457999999999999999999763
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=91.94 E-value=0.077 Score=48.22 Aligned_cols=22 Identities=23% Similarity=0.182 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
--++|+|++|+|||||+..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3588999999999999999975
|
| >1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A | Back alignment and structure |
|---|
Probab=91.92 E-value=0.18 Score=46.99 Aligned_cols=35 Identities=29% Similarity=0.457 Sum_probs=25.6
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 7 RILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 7 ~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.+..|++... .+.-.|++.|+||+|||.|.+++..
T Consensus 92 ~l~~~l~~~~-~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 92 VFLGWATKKF-GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHTTCS-TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHhCCC-CCCcEEEEECCCCCCHHHHHHHHHh
Confidence 3444554432 3344599999999999999999976
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=91.90 E-value=0.09 Score=48.54 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
...-+++.|+||+|||+|++.+..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345678889999999999999975
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=91.84 E-value=0.08 Score=51.15 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.--++++|++||||||+++.+.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 44688999999999999999875
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=91.79 E-value=0.086 Score=47.53 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.-.+++.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=91.74 E-value=0.047 Score=52.56 Aligned_cols=23 Identities=35% Similarity=0.575 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~ 44 (329)
-++++|++|+|||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999998743
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=91.66 E-value=0.086 Score=48.71 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.-.+++.|++|+|||+|++.+.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 34699999999999999999875
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=91.66 E-value=0.091 Score=50.31 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
.+.=++.++|++|+|||||++.+.+..
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345589999999999999999998864
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=91.64 E-value=0.15 Score=47.43 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.-.++|.|++|+|||++++.+..
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999975
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=91.53 E-value=0.093 Score=47.97 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.-.|+|+|++|+||||+.+.+.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999965
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=91.52 E-value=0.1 Score=48.68 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.+++.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998764
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=91.50 E-value=0.11 Score=48.09 Aligned_cols=36 Identities=19% Similarity=0.316 Sum_probs=25.6
Q ss_pred HHHHHHHhcC-CCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 7 RILDWFKSLF-WKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 7 ~~~~~~~~~~-~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.+..++.... ....-.+++.|++|+|||++++.+..
T Consensus 30 ~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 30 RLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp HHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 3444444332 23445799999999999999999875
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=91.46 E-value=0.16 Score=50.26 Aligned_cols=25 Identities=24% Similarity=0.334 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
...-+++++|+||+|||++++.+..
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999864
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=91.34 E-value=0.11 Score=44.26 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
.|.+.|.+||||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=91.29 E-value=0.11 Score=43.36 Aligned_cols=19 Identities=26% Similarity=0.513 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q psy2970 23 LTLVGLQCSGKTTFVNVIA 41 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~ 41 (329)
.+++|+.|+|||||+.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4789999999999999975
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.21 E-value=0.095 Score=52.15 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
+.=.++|+|+.|+|||||++.+.+-
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 4457999999999999999999774
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=90.86 E-value=0.12 Score=47.11 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
--++|.|++|+|||||++++...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 36889999999999999999764
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=90.80 E-value=0.24 Score=46.08 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
-.+++.|++|+|||++++.+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=90.79 E-value=0.12 Score=52.47 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.+.++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 7899999999999999998774
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=90.78 E-value=0.12 Score=47.57 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.+++.|++|+|||++++.+.+.
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999998753
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=90.78 E-value=0.16 Score=46.11 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
-.+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999998763
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=90.77 E-value=0.15 Score=44.61 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
..+.|.+.|.+||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999763
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.70 E-value=0.19 Score=49.77 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
..--|++.|+||+|||+|++++.+
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 344699999999999999999975
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=90.68 E-value=0.14 Score=51.86 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
=.+.++|+.|+|||||++.+.+-.
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998743
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=90.61 E-value=0.13 Score=52.13 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
=.++++|++|+|||||++.+.+-
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999999874
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=90.60 E-value=0.13 Score=50.83 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
.+.=++.++|++|+|||||++.+.+..
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 345579999999999999999998854
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=90.58 E-value=0.13 Score=47.02 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
-++|.|++|+|||||++++...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 7899999999999999999753
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=90.56 E-value=0.1 Score=46.98 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
++..-|+|.|..||||||+++.+..
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999998865
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=90.55 E-value=0.084 Score=47.16 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
-.+++.|++|+|||+|++.+..
T Consensus 45 ~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHH
Confidence 3489999999999999999975
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=90.47 E-value=0.24 Score=46.52 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=19.1
Q ss_pred ceEEEE--EcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTL--VGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIll--lG~~gvGKSSLin~l~~ 42 (329)
.-.++| .|++|+|||+|++.+..
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~ 74 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVK 74 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHH
Confidence 345666 79999999999999875
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.47 E-value=0.2 Score=49.66 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+..-.|++.|+||+|||+|++++.+
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHH
Confidence 3456899999999999999999976
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=90.41 E-value=0.17 Score=44.78 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
..-|++-|..||||||+++.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 356899999999999999999753
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=90.35 E-value=0.22 Score=45.94 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.-.|++.|++|+|||++++.+...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 356999999999999999999653
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=90.33 E-value=0.17 Score=47.23 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIA 41 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~ 41 (329)
+.-.|+++|++||||||++..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34578999999999999999985
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=90.22 E-value=0.15 Score=47.36 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.-.|++.|++|+|||+|++.+...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 357999999999999999999753
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.19 E-value=0.14 Score=47.93 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
-.|++.|++|+|||+|++.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 57999999999999999999863
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=90.17 E-value=0.097 Score=48.63 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=18.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
++..-|.|.|++||||||+.+.|..
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3556799999999999999999865
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=90.15 E-value=0.19 Score=48.92 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+..-|+++|.+||||||+.+++..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 445688999999999999999975
|
| >2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=90.06 E-value=2.7 Score=37.93 Aligned_cols=60 Identities=15% Similarity=0.119 Sum_probs=34.1
Q ss_pred cceeEEEEECCCcccHHHHHHHHHHHHhC--CcCCCCcEE-EEEEcCCCCCh---hhHHHHHHHhCC
Q psy2970 130 FQLIKYMVDAADTDKLEASRNELHALIEK--PQLIGIPIL-VLGNKRDLPNA---LDEKELIDRIMI 190 (329)
Q Consensus 130 ~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~--~~~~~iPIi-LVgNK~Dl~~~---~e~~~l~~~~~~ 190 (329)
.+.+++++..+ ..+...+...+..+.+. ....+.+++ +|.|+.|.... ...+++.+.++.
T Consensus 177 aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~~~~~~~~~~~~~~~~~ 242 (298)
T 2oze_A 177 SDYVMIPLQAE-EESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSATIKSNLEELYKQHKE 242 (298)
T ss_dssp CSEEEEEECGG-GCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTCHHHHHHHHHHHHHTTT
T ss_pred CCeEEEEecCc-HHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCcHHHHHHHHHHHHHhcc
Confidence 55566777754 34455544443333221 112456754 89999998764 345667777764
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=90.06 E-value=0.15 Score=44.08 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.+.|++.|.+|+||||+.+.+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999865
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=89.98 E-value=0.27 Score=43.83 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
....|++.|++|+|||++++.+...-
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 35689999999999999999997643
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.90 E-value=0.18 Score=47.81 Aligned_cols=26 Identities=15% Similarity=0.083 Sum_probs=22.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
..+.-.+++.|+||+|||++++.+..
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~ 67 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMD 67 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 44667899999999999999999875
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=89.88 E-value=0.15 Score=51.18 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
=-+.|+|++|+|||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 4578999999999999999965
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=89.86 E-value=0.15 Score=51.63 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
=-+.++|+.|+|||||++.+.+-.
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 357899999999999999998743
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=89.80 E-value=0.17 Score=48.43 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=18.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIA 41 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~ 41 (329)
..+ .+|+|+.|+|||||++.+.
T Consensus 23 ~g~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 23 SGI-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp SEE-EEEECCTTSSHHHHHHHHH
T ss_pred CCe-EEEECCCCCCHHHHHHHHH
Confidence 344 5689999999999999986
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=89.65 E-value=0.24 Score=45.17 Aligned_cols=24 Identities=21% Similarity=0.134 Sum_probs=20.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHH
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIA 41 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~ 41 (329)
+.+++|++.|++||||||++-++.
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHH
Confidence 457999999999999999977764
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.64 E-value=0.17 Score=52.10 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~ 44 (329)
-+.++|+.|+|||||++.+.+-.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58999999999999999998743
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=89.63 E-value=0.14 Score=52.17 Aligned_cols=23 Identities=43% Similarity=0.522 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
=.+.++|++|+|||||++.+.+-
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 37899999999999999998763
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=89.62 E-value=0.16 Score=48.33 Aligned_cols=25 Identities=24% Similarity=0.221 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
+.--+.|+|++|+|||||++++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4456889999999999999999875
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A | Back alignment and structure |
|---|
Probab=89.46 E-value=0.31 Score=43.93 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.+++.|++|+|||++++.+...
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHH
Confidence 4999999999999999998653
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.43 E-value=0.27 Score=48.74 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+..-.|++.|+||+|||+|++++.+
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3456899999999999999999976
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=89.38 E-value=0.2 Score=51.08 Aligned_cols=26 Identities=23% Similarity=0.491 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.+...|+|+|.+|+|||||.+.+.+.
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHh
Confidence 35678999999999999999999763
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=89.36 E-value=0.42 Score=43.17 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.+++.|++|+|||++++.+...
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5999999999999999998753
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=89.30 E-value=0.19 Score=47.55 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
....+++.|++|+|||++++.+..
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999975
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=89.21 E-value=0.82 Score=41.85 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=16.7
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~ 43 (329)
+++-|++|+|||++++.+...
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 455566999999999999653
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=89.16 E-value=0.21 Score=44.85 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
...|+++|++|+|||+|...+...-
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3569999999999999999998653
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=89.14 E-value=0.22 Score=43.22 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
--+++.|+||+|||+|..++..
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3578899999999999998753
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=89.08 E-value=0.2 Score=47.21 Aligned_cols=24 Identities=29% Similarity=0.446 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
..-.|++.|+||+|||++.+.+..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999975
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=89.00 E-value=0.13 Score=52.31 Aligned_cols=21 Identities=33% Similarity=0.703 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
.+.++|++|+|||||++.+.+
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 789999999999999998766
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=89.00 E-value=0.44 Score=42.93 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.+++.|++|+|||++++.+...
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 3999999999999999998753
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* | Back alignment and structure |
|---|
Probab=88.97 E-value=0.43 Score=47.73 Aligned_cols=38 Identities=21% Similarity=0.263 Sum_probs=26.8
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 5 LNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 5 ~~~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+..+..++........--|.|+|.+|+|||||..++.+
T Consensus 137 ~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 137 VDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp HHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 34455555443222335688999999999999999985
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=88.96 E-value=0.21 Score=51.41 Aligned_cols=21 Identities=38% Similarity=0.555 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
.+.|+|+.|+|||||++.+.+
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~G 139 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAG 139 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhC
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=88.90 E-value=0.23 Score=50.22 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~ 44 (329)
.+.|+|+.|+|||||++.+.+-.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998854
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=88.90 E-value=0.39 Score=45.64 Aligned_cols=42 Identities=12% Similarity=0.170 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhcCCC-----------CceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 3 VLLNRILDWFKSLFWK-----------EEMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 3 ~~~~~~~~~~~~~~~~-----------k~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
.++..+..|+...+.. ...-|++.|++|+||||+...+....
T Consensus 116 ~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~a~~l~~~g 168 (314)
T 1ko7_A 116 QLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSETALELIKRG 168 (314)
T ss_dssp HHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHhcC
Confidence 3555666666654432 24579999999999999999998753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 329 | ||||
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 1e-14 | |
| d1azta2 | 221 | c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub | 3e-14 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 2e-13 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 5e-13 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 2e-12 | |
| d1e0sa_ | 173 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 6e-12 | |
| d1moza_ | 182 | c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea | 1e-11 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 4e-11 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 5e-11 | |
| d1zj6a1 | 177 | c.37.1.8 (A:2-178) ADP-ribosylation factor {Human | 4e-10 | |
| d2f7sa1 | 186 | c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T | 6e-10 | |
| d2g6ba1 | 170 | c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T | 2e-09 | |
| d2bcjq2 | 200 | c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub | 5e-09 | |
| d1zcba2 | 200 | c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub | 1e-08 | |
| d1svsa1 | 195 | c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub | 2e-08 | |
| d1r8sa_ | 160 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 4e-08 | |
| d1z0fa1 | 166 | c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta | 6e-08 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 7e-08 | |
| d2fh5b1 | 207 | c.37.1.8 (B:63-269) Signal recognition particle re | 9e-08 | |
| d1zd9a1 | 164 | c.37.1.8 (A:18-181) ADP-ribosylation factor {Human | 3e-07 | |
| d1r2qa_ | 170 | c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: | 5e-07 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 5e-07 | |
| d1ksha_ | 165 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 6e-07 | |
| d2f9la1 | 175 | c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T | 1e-06 | |
| d1yzqa1 | 164 | c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta | 2e-06 | |
| d2a5ja1 | 173 | c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta | 3e-06 | |
| d2qtvb1 | 166 | c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom | 3e-06 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 3e-06 | |
| d1f6ba_ | 186 | c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr | 4e-06 | |
| d1wmsa_ | 174 | c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: | 9e-06 | |
| d1vg8a_ | 184 | c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId | 1e-05 | |
| d1ky3a_ | 175 | c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y | 1e-05 | |
| d2ngra_ | 191 | c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: | 2e-05 | |
| d1kmqa_ | 177 | c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9 | 3e-05 | |
| d1ek0a_ | 170 | c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces | 6e-05 | |
| d2atxa1 | 185 | c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax | 1e-04 | |
| d1kaoa_ | 167 | c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: | 1e-04 | |
| d1z08a1 | 167 | c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T | 3e-04 | |
| d1upta_ | 169 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 3e-04 | |
| d1z06a1 | 165 | c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) | 6e-04 | |
| d1c1ya_ | 167 | c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: | 7e-04 | |
| d1z2aa1 | 164 | c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta | 9e-04 | |
| d1m7ba_ | 179 | c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T | 0.002 | |
| d1z0ja1 | 167 | c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [ | 0.002 | |
| d1ctqa_ | 166 | c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi | 0.002 | |
| d2erya1 | 171 | c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [ | 0.002 | |
| d2atva1 | 168 | c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro | 0.003 | |
| d1mh1a_ | 183 | c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96 | 0.004 |
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 68.7 bits (167), Expect = 1e-14
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQP 76
M++ L+G GK+ + +F+ I T+G + + I V +++WD GQ
Sbjct: 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62
Query: 77 RFRSMWERYCRGVNAIVW 94
RFR++ Y RG I+
Sbjct: 63 RFRTITTAYYRGAMGIIL 80
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Score = 68.6 bits (167), Expect = 3e-14
Identities = 31/160 (19%), Positives = 56/160 (35%), Gaps = 35/160 (21%)
Query: 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQP 76
++ L L+G SGK+T V + + T G K V ++D+GGQ
Sbjct: 3 YRATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFETKFQVDKVNFHMFDVGGQR 58
Query: 77 RFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYM 136
R W + V AI++ S + +
Sbjct: 59 DERRKWIQCFNDVTAIIFV---VASSSY----------------------------NMVI 87
Query: 137 VDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176
+ T++L+ + N ++ L I +++ NK+DL
Sbjct: 88 REDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL 127
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.7 bits (159), Expect = 2e-13
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRF 78
L L+G GK+ + + ++ D I T+G + + ++ V +++WD GQ RF
Sbjct: 9 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERF 68
Query: 79 RSMWERYCRGVNAIVW 94
R++ Y RG + I+
Sbjct: 69 RTITSSYYRGSHGIII 84
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 64.4 bits (156), Expect = 5e-13
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRF 78
L L+G GKT + + F+ I T+G + + ++ + +++WD GQ RF
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 68
Query: 79 RSMWERYCRGVNAIVW 94
R++ Y RG I+
Sbjct: 69 RTITTAYYRGAMGIML 84
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.9 bits (152), Expect = 2e-12
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRF 78
+ L+G GKT V G F T+G + +I V +++WD GQ RF
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF 67
Query: 79 RSMWERYCRGVNAIVW 94
RS+ + Y R NA++
Sbjct: 68 RSITQSYYRSANALIL 83
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Score = 61.1 bits (147), Expect = 6e-12
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 11 WFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVW 70
+F +EM + ++GL +GKTT + + GQ IPTVGFN+ +T NV VW
Sbjct: 3 VLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVTYKNVKFNVW 61
Query: 71 DIGGQPRFRSMWERYCRGVNAIVWT 95
D+GGQ + R +W Y G +++
Sbjct: 62 DVGGQDKIRPLWRHYYTGTQGLIFV 86
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Score = 60.8 bits (146), Expect = 1e-11
Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 2/127 (1%)
Query: 6 NRILDWFKSLFW-KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGN 64
N F L+ +E+ + ++GL +GKTT + + G+ PT+GFN+ ++ N
Sbjct: 2 NIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVETLSYKN 60
Query: 65 VTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPM 124
+ + VWD+GGQ R W Y A+++ + S L+ + +
Sbjct: 61 LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA 120
Query: 125 WLSLLFQ 131
L +
Sbjct: 121 LLVFANK 127
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.7 bits (141), Expect = 4e-11
Identities = 16/79 (20%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQ 75
+++ ++G GK++ + F ++ T+G + + + + +WD GQ
Sbjct: 7 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 66
Query: 76 PRFRSMWERYCRGVNAIVW 94
RFR++ Y RG ++
Sbjct: 67 ERFRTLTPSYYRGAQGVIL 85
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 58.3 bits (140), Expect = 5e-11
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRF 78
+ ++G GKT+F+ A F+ + TVG + + + +++WD GQ R+
Sbjct: 8 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERY 67
Query: 79 RSMWERYCRGVNAIVW 94
R++ Y RG +
Sbjct: 68 RTITTAYYRGAMGFIL 83
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Score = 55.8 bits (133), Expect = 4e-10
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 8 ILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTI 67
+ LF +E ++ +VGL +GKTT + + + PT+G N+ +I N
Sbjct: 3 LFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNVEEIVINNTRF 61
Query: 68 KVWDIGGQPRFRSMWERYCRGVNAIVW 94
+WDIGGQ RS W Y ++
Sbjct: 62 LMWDIGGQESLRSSWNTYYTNTEFVIV 88
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.7 bits (133), Expect = 6e-10
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 14/88 (15%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKIT--------------KGNVT 66
++L +G GKTTF+ +F+ I TVG + R+ V
Sbjct: 6 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65
Query: 67 IKVWDIGGQPRFRSMWERYCRGVNAIVW 94
+++WD GQ RFRS+ + R +
Sbjct: 66 LQLWDTAGQERFRSLTTAFFRDAMGFLL 93
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.7 bits (128), Expect = 2e-09
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 10 DWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK-----ITKGN 64
D++ F ++ LVG GKT + G F + + +
Sbjct: 1 DFYDVAF-----KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVK 55
Query: 65 VTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94
V +++WD GQ RFRS+ Y R +A++
Sbjct: 56 VKLQMWDTAGQERFRSVTHAYYRDAHALLL 85
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 53.0 bits (126), Expect = 5e-09
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR 79
E++L L+G SGK+TF+ + S +PT G +V ++ D+GGQ R
Sbjct: 2 ELKLLLLGTGESGKSTFIKQMRIIHGSG--VPTTGIIEYPFDLQSVIFRMVDVGGQRSER 59
Query: 80 SMWERYCRGVNAIVW 94
W V +I++
Sbjct: 60 RKWIHCFENVTSIMF 74
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 51.8 bits (123), Expect = 1e-08
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 25 LVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWER 84
L+G SGK+TF+ + + PT G + NV K+ D+GGQ R W
Sbjct: 7 LLGAGESGKSTFLKQM---RIIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFE 63
Query: 85 YCRGVNAIVW 94
V +I++
Sbjct: 64 CFDSVTSILF 73
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 51.5 bits (122), Expect = 2e-08
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR 79
E++L L+G SGK+T V Q G T ++ K++D+GGQ R
Sbjct: 2 EVKLLLLGAGESGKSTIVK-----QMKIIHEAGTGIVETHFTFKDLHFKMFDVGGQRSER 56
Query: 80 SMWERYCRGVNAIVW 94
W GV AI++
Sbjct: 57 KKWIHCFEGVTAIIF 71
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Score = 49.7 bits (117), Expect = 4e-08
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRS 80
M + +VGL +GKTT + + G+ IPT+GFN+ + N++ VWD+GGQ + R
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRP 59
Query: 81 MWERYCRGVNAIVW 94
+W Y + +++
Sbjct: 60 LWRHYFQNTQGLIF 73
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.5 bits (117), Expect = 6e-08
Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRF 78
++G GK+ ++ +F D T+G +++ + +++WD GQ RF
Sbjct: 7 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF 66
Query: 79 RSMWERYCRGVNAIVWT 95
R++ Y RG +
Sbjct: 67 RAVTRSYYRGAAGALMV 83
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.1 bits (116), Expect = 7e-08
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKIT----KGNVTIKVWDIGGQPRF 78
++G +GK+ ++ +F D T+G V +++WD GQ RF
Sbjct: 8 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 67
Query: 79 RSMWERYCRGVNAIVW 94
RS+ Y RG +
Sbjct: 68 RSVTRSYYRGAAGALL 83
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 49.6 bits (117), Expect = 9e-08
Identities = 22/168 (13%), Positives = 50/168 (29%), Gaps = 41/168 (24%)
Query: 24 TLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWE 83
VGL SGKT + +GQ+ ++ + N + P S+
Sbjct: 4 LFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62
Query: 84 RYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD 143
+ + + ++VD+A
Sbjct: 63 QLLDR-----------------------FKSSAR--------------AVVFVVDSAAFQ 85
Query: 144 K-LEASRNELHALIEKPQLI--GIPILVLGNKRDLPNALDEKELIDRI 188
+ ++ L+ ++ + +L+ NK+D+ A K + ++
Sbjct: 86 REVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQL 133
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Score = 47.4 bits (111), Expect = 3e-07
Identities = 110/174 (63%), Positives = 125/174 (71%), Gaps = 41/174 (23%)
Query: 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRF 78
EEMELTLVGLQ SGKTTFVNVIASGQF++DMIPTVGFNMRKITKGNVTIK+WDIGGQPRF
Sbjct: 1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRF 60
Query: 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVD 138
RSMWERYCRGV+AIV+ MVD
Sbjct: 61 RSMWERYCRGVSAIVY-----------------------------------------MVD 79
Query: 139 AADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRIMIDF 192
AAD +K+EAS+NELH L++KPQL GIP+LVLGNKRDLP ALDEKELI+++ +
Sbjct: 80 AADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSA 133
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.9 bits (110), Expect = 5e-07
Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 4/108 (3%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG----FNMRKITKGNVTIKVWDIGGQPRF 78
L L+G GK++ V GQF + T+G + V ++WD GQ R+
Sbjct: 9 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY 68
Query: 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWL 126
S+ Y RG A + + + + + + L
Sbjct: 69 HSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIAL 116
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 46.9 bits (110), Expect = 5e-07
Identities = 45/187 (24%), Positives = 80/187 (42%), Gaps = 44/187 (23%)
Query: 8 ILDWFKSLFW--KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNV 65
+L + L +E+ + L+GL +GKTT + +AS S + PT GFN++ +
Sbjct: 2 LLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIKSVQSQGF 60
Query: 66 TIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMW 125
+ VWDIGGQ + R W Y + +++
Sbjct: 61 KLNVWDIGGQRKIRPYWRSYFENTDILIY------------------------------- 89
Query: 126 LSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELI 185
++D+AD + E + EL L+E+ +L +P+L+ NK+DL A E+
Sbjct: 90 ----------VIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIA 139
Query: 186 DRIMIDF 192
+ + +
Sbjct: 140 EGLNLHT 146
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Score = 46.6 bits (109), Expect = 6e-07
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR 79
E+ L ++GL +GKTT + + PT+GFN++ + + +WD+GGQ R
Sbjct: 2 ELRLLMLGLDNAGKTTILKKFNGEDVDT-ISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 60
Query: 80 SMWERYCRGVNAIVW 94
S W Y + ++W
Sbjct: 61 SYWRNYFESTDGLIW 75
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (108), Expect = 1e-06
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRF 78
+ L+G GK+ ++ +F+ + T+G ++ + ++WD GQ R+
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY 66
Query: 79 RSMWERYCRGVNAIVW 94
R + Y RG +
Sbjct: 67 RRITSAYYRGAVGALL 82
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.3 bits (106), Expect = 2e-06
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITK----GNVTIKVWDIGGQPRF 78
L +G Q GKT+ + F T+G + T + +++WD GQ RF
Sbjct: 3 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERF 62
Query: 79 RSMWERYCRGVNAIVW 94
RS+ Y R A V
Sbjct: 63 RSLIPSYIRDSAAAVV 78
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.5 bits (104), Expect = 3e-06
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Query: 25 LVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRS 80
++G GK+ + +F T+G I + +++WD GQ FRS
Sbjct: 8 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS 67
Query: 81 MWERYCRGVNAIVW 94
+ Y RG +
Sbjct: 68 ITRSYYRGAAGALL 81
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.7 bits (104), Expect = 3e-06
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 25 LVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWER 84
+GL +GKTT ++++ + + + + PT ++ GN+ +D+GG + R +W+
Sbjct: 5 FLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKD 63
Query: 85 YCRGVNAIVW 94
Y VN IV+
Sbjct: 64 YFPEVNGIVF 73
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.0 bits (105), Expect = 3e-06
Identities = 26/169 (15%), Positives = 46/169 (27%), Gaps = 41/169 (24%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMW 82
+ + G Q SGKT+ + ++ + + + + D G + R
Sbjct: 6 IIIAGPQNSGKTSLLTLLTTDSVRP--TVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKL 63
Query: 83 ERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT 142
Y + LI + D
Sbjct: 64 SDYL------------------------------------KTRAKFVKGLIFMVDSTVDP 87
Query: 143 DKLEASRNELHAL---IEKPQLIGIPILVLGNKRDLPNALDEKELIDRI 188
KL + L + E GI IL+ NK +L A ++ D +
Sbjct: 88 KKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 136
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 44.3 bits (103), Expect = 4e-06
Identities = 43/180 (23%), Positives = 79/180 (43%), Gaps = 44/180 (24%)
Query: 8 ILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTI 67
+L + +K+ +L +GL +GKTT ++++ + +PT+ ++T +T
Sbjct: 3 VLQFLG--LYKKTGKLVFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTSEELTIAGMTF 59
Query: 68 KVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLS 127
+D+GG + R +W+ Y +N IV+
Sbjct: 60 TTFDLGGHIQARRVWKNYLPAINGIVF--------------------------------- 86
Query: 128 LLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDR 187
+VD AD ++L S+ EL +L+ + +PIL+LGNK D P A+ E+ L +
Sbjct: 87 --------LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREM 138
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.0 bits (100), Expect = 9e-06
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFN----MRKITKGNVTIKVWDIGGQPRF 78
+ L+G GK++ +N + +F + T+G ++ VT+++WD GQ RF
Sbjct: 9 VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF 68
Query: 79 RSMWERYCRGVNAIVW 94
RS+ + RG + +
Sbjct: 69 RSLRTPFYRGSDCCLL 84
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.1 bits (100), Expect = 1e-05
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG----FNMRKITKGNVTIKVWDIGGQP 76
+++ ++G GKT+ +N + +FS T+G + VT+++WD GQ
Sbjct: 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62
Query: 77 RFRSMWERYCRGVNAIVW 94
RF+S+ + RG + V
Sbjct: 63 RFQSLGVAFYRGADCCVL 80
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.7 bits (99), Expect = 1e-05
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKIT-----KGNVTIKVWDIGGQ 75
+++ ++G GKT+ ++ + ++SQ T+G + T++VWD GQ
Sbjct: 3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62
Query: 76 PRFRSMWERYCRGVNAIVW 94
RF+S+ + RG + V
Sbjct: 63 ERFQSLGVAFYRGADCCVL 81
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.3 bits (98), Expect = 2e-05
Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 3/80 (3%)
Query: 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITK---GNVTIKVWDIGGQ 75
+ ++ +VG GKT + + +F + +PTV N T+ ++D GQ
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 76 PRFRSMWERYCRGVNAIVWT 95
+ + + +
Sbjct: 62 EDYDRLRPLSYPQTDVFLVC 81
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.9 bits (97), Expect = 3e-05
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQPRFR 79
L +VG GKT + V + QF + +PTV N + + V + +WD G +
Sbjct: 5 LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYD 64
Query: 80 SMWERYCRGVNAIVWT 95
+ + I+
Sbjct: 65 RLRPLSYPDTDVILMC 80
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.8 bits (94), Expect = 6e-05
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITK----GNVTIKVWDIGGQP 76
++L L+G GK++ V S F+++ PT+G V ++WD GQ
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 77 RFRSMWERYCRGVNAIVW 94
RF S+ Y R A +
Sbjct: 64 RFASLAPMYYRNAQAALV 81
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (92), Expect = 1e-04
Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITK---GNVTIKVWDIGGQPR 77
++ +VG GKT + A+ F ++ +PTV + + ++D GQ
Sbjct: 10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 69
Query: 78 FRSMWERYCRGVNAIVW 94
+ + + +
Sbjct: 70 YDRLRPLSYPMTDVFLI 86
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.9 bits (92), Expect = 1e-04
Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG---FNMRKITKGNVTIKVWDIGGQP 76
E ++ ++G GK+ +G F + PT+ ++ +++ D G
Sbjct: 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTE 62
Query: 77 RFRSMWERYCRGVNAIVW 94
+F SM + Y + +
Sbjct: 63 QFASMRDLYIKNGQGFIL 80
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (88), Expect = 3e-04
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKG----NVTIKVWDIGGQPRF 78
+ L+G C GKT+ V +F+ I T+G + V + +WD GQ RF
Sbjct: 6 VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF 65
Query: 79 RSMWERYCRGVNAIVW 94
++ Y R N +
Sbjct: 66 HALGPIYYRDSNGAIL 81
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Score = 38.5 bits (88), Expect = 3e-04
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR 79
EM + ++GL +GKTT + + G+ IPT+GFN+ +T N+ +VWD+GG R
Sbjct: 5 EMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 63
Query: 80 SMWERYCRGVNAIVW 94
W Y +A+++
Sbjct: 64 PYWRCYYSNTDAVIY 78
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.7 bits (86), Expect = 6e-04
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRF 78
+ ++G GKT +G+F T+G + R+ I + I++WD GQ RF
Sbjct: 5 IIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERF 64
Query: 79 -RSMWERYCRGVNAIVW 94
+SM + Y R V+A+V+
Sbjct: 65 RKSMVQHYYRNVHAVVF 81
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (86), Expect = 7e-04
Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITK---GNVTIKVWDIGGQP 76
E +L ++G GK+ G F + PT+ + RK + +++ D G
Sbjct: 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTE 62
Query: 77 RFRSMWERYCRGVNAIVW 94
+F +M + Y +
Sbjct: 63 QFTAMRDLYMKNGQGFAL 80
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.4 bits (85), Expect = 9e-04
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGF----NMRKITKGNVTIKVWDIGGQP 76
+++ +VG GK++ + G F++D T+G ++ +V + +WD GQ
Sbjct: 3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 62
Query: 77 RFRSMWERYCRGVNAIVW 94
F ++ + Y RG A V
Sbjct: 63 EFDAITKAYYRGAQACVL 80
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.6 bits (83), Expect = 0.002
Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 23 LTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGN---VTIKVWDIGGQPRFR 79
+ +VG GKT ++V A F ++ +PTV N + + + + +WD G P +
Sbjct: 5 IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYD 64
Query: 80 SMWERYCRGVNAIVWTGGLY 99
++ +A++ +
Sbjct: 65 NVRPLSYPDSDAVLICFDIS 84
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.1 bits (82), Expect = 0.002
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFN----MRKITKGNVTIKVWDIGGQ 75
E+++ L+G GK++ + F ++ PT+G + + +WD G
Sbjct: 4 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGL 63
Query: 76 PRFRSMWERYCRGVNAIVW 94
RFR++ Y RG A +
Sbjct: 64 ERFRALAPMYYRGSAAAII 82
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.1 bits (82), Expect = 0.002
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG---FNMRKITKGNVTIKVWDIGGQP 76
E +L +VG GK+ + F + PT+ I + + D GQ
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 77 RFRSMWERYCRGVNAIVW 94
+ +M ++Y R +
Sbjct: 63 EYSAMRDQYMRTGEGFLC 80
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.2 bits (82), Expect = 0.002
Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 3/81 (3%)
Query: 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVG---FNMRKITKGNVTIKVWDIG 73
+E+ L +VG GK+ F D PT+ I + + D
Sbjct: 2 MQEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTA 61
Query: 74 GQPRFRSMWERYCRGVNAIVW 94
GQ F +M E+Y R +
Sbjct: 62 GQEEFGAMREQYMRTGEGFLL 82
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.8 bits (81), Expect = 0.003
Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 2/78 (2%)
Query: 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGG--QPR 77
E++L + G GK+ V + +F + PT+ R + + +I
Sbjct: 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQE 61
Query: 78 FRSMWERYCRGVNAIVWT 95
E + R V
Sbjct: 62 DTIQREGHMRWGEGFVLV 79
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.8 bits (81), Expect = 0.004
Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
Query: 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITK---GNVTIKVWDIGGQ 75
+ ++ +VG GKT + + F + IPTV N V + +WD GQ
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 76 PRFRSMWERYCRGVNAIVWT 95
+ + + +
Sbjct: 64 EDYDRLRPLSYPQTDVSLIC 83
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 329 | |||
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 99.96 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 99.96 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 99.96 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 99.96 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 99.95 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 99.95 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.95 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.95 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.95 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 99.95 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.94 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.94 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.94 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.94 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.94 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.94 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.94 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.94 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.94 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.94 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.94 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.94 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.94 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.93 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.93 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.93 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.93 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.93 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.93 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.92 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.91 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.9 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.89 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.87 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.87 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.87 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.86 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.86 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.86 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.8 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.78 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.76 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.75 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.74 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.72 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.69 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.68 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.67 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.66 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.65 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.63 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.52 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.52 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.47 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.44 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.42 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.4 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.39 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.31 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.28 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.22 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.21 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.12 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.11 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.09 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.08 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.07 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 98.93 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 98.83 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 98.78 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 98.64 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 98.61 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 98.6 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 98.35 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 98.32 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 98.28 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.08 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 97.67 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.65 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 97.22 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.2 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 97.2 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.19 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 97.15 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.02 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.93 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.9 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.81 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.71 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.59 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.58 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.54 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.48 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 96.46 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.41 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.39 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.38 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.36 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.35 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.32 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.26 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.25 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.23 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.19 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 96.18 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.16 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.16 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.11 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 96.06 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 96.0 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.92 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.9 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.83 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.75 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 95.75 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.66 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.63 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.59 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.56 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.53 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.51 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.5 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.49 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.42 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.25 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.24 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 95.18 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.16 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.09 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 95.06 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.04 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.04 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.04 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.96 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.92 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 94.86 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 94.86 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.78 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.75 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 94.74 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 94.73 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 94.58 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 94.53 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 94.52 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 94.37 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 94.36 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 94.3 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 94.24 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 94.22 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 94.21 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.17 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 94.14 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 94.11 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 94.07 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 94.05 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.05 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 94.0 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.95 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 93.95 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 93.94 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 93.9 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.65 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 93.61 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 93.61 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 93.61 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 93.58 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 93.58 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 93.57 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 93.37 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 93.33 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 93.26 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 93.25 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 92.99 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 92.98 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 92.91 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 92.9 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 92.89 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 92.88 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 92.86 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 92.83 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 92.82 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 92.79 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 92.45 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.36 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 92.04 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 91.89 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.86 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 91.81 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 91.65 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 91.64 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 91.63 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 91.31 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 91.3 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 91.23 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.18 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 91.1 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 90.64 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 90.38 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 90.09 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 89.89 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 89.85 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 89.78 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 89.65 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 89.26 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 89.15 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 89.14 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 88.85 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 88.71 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 88.57 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 88.2 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 88.04 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 87.95 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 87.78 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 87.7 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 87.57 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 87.2 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 86.67 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 86.37 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 85.87 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 85.73 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 85.65 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 85.6 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 85.32 | |
| d1zpda1 | 175 | Pyruvate decarboxylase {Zymomonas mobilis [TaxId: | 84.59 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 84.46 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 83.99 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 83.54 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 83.36 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 83.2 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 83.09 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 81.69 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 81.6 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 81.55 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 80.35 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 80.21 |
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1e-29 Score=216.06 Aligned_cols=152 Identities=18% Similarity=0.307 Sum_probs=136.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
+|.+||+++|++|||||||++++.++.+.+.+.||++..+.+ +++..+.+.+||++|++.+..++..+++.+|+++
T Consensus 2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i- 80 (167)
T d1xtqa1 2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI- 80 (167)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEE-
T ss_pred CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhh-
Confidence 467899999999999999999999999998899999988653 5778899999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++++++|+.+..|+.++.+.....++|++|||||+|
T Consensus 81 ----------------------------------------lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~D 120 (167)
T d1xtqa1 81 ----------------------------------------LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD 120 (167)
T ss_dssp ----------------------------------------EEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTT
T ss_pred ----------------------------------------hhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccc
Confidence 9999999999999999999988765567899999999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+... +++++++++++++|+||||+++.+.+++++.+
T Consensus 121 l~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~l 161 (167)
T d1xtqa1 121 LHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 161 (167)
T ss_dssp CGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH
Confidence 8653 56788999999999999999988887777554
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.8e-29 Score=213.25 Aligned_cols=151 Identities=17% Similarity=0.315 Sum_probs=135.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
+++||+++|++|||||||++++.++++.+.+.||++..+.. +++..+.+.+||++|++.+...+..+++++++++
T Consensus 2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~i-- 79 (167)
T d1kaoa_ 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI-- 79 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE--
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhccccee--
Confidence 68999999999999999999999999998899999865543 5677889999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++++|+++..|+.++.......++|++|||||+|+
T Consensus 80 ---------------------------------------lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl 120 (167)
T d1kaoa_ 80 ---------------------------------------LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL 120 (167)
T ss_dssp ---------------------------------------EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGG
T ss_pred ---------------------------------------eeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccch
Confidence 99999999999999999998877555678999999999998
Q ss_pred CCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 176 PNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 176 ~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
.+. .++++++++++++|+||||+++.+++++++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i 160 (167)
T d1kaoa_ 121 ESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp GGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred hhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHH
Confidence 653 57889999999999999999988888877654
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3e-29 Score=213.54 Aligned_cols=150 Identities=21% Similarity=0.301 Sum_probs=131.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
++||+++|++|||||||++++.++.+.+.+.||++..+.. ++++.+.+.+||++|++.+...+..+++.+|+++
T Consensus 2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~i--- 78 (171)
T d2erxa1 2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFI--- 78 (171)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEE---
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEE---
Confidence 6899999999999999999999999998999999977654 5677789999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC-CcCCCCcEEEEEEcCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK-PQLIGIPILVLGNKRDL 175 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~-~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++++|+++..|+.++.+. ....++|++|||||+|+
T Consensus 79 --------------------------------------lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl 120 (171)
T d2erxa1 79 --------------------------------------LVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDE 120 (171)
T ss_dssp --------------------------------------EEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGG
T ss_pred --------------------------------------EEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccc
Confidence 999999999999999999887653 23467999999999998
Q ss_pred CCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 176 PNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 176 ~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
... .++++++++++++|+||||+++.+++++++.+
T Consensus 121 ~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l 160 (171)
T d2erxa1 121 SPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 160 (171)
T ss_dssp GGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred cccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence 643 57889999999999999999977777776554
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=99.96 E-value=5.1e-29 Score=213.11 Aligned_cols=149 Identities=19% Similarity=0.323 Sum_probs=131.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEeecc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~ 97 (329)
+||+++|++|||||||++++..++|...+.||++..+.. +++..+.+.+||++|++.+..++..+++++|+++
T Consensus 5 ~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~i---- 80 (168)
T d1u8za_ 5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL---- 80 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE----
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeE----
Confidence 699999999999999999999999999999999988764 5778899999999999999999999999999999
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN 177 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~ 177 (329)
+|||++++++|+.+..|+.++.+.....++|+++||||+|+.+
T Consensus 81 -------------------------------------lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~ 123 (168)
T d1u8za_ 81 -------------------------------------CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 123 (168)
T ss_dssp -------------------------------------EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG
T ss_pred -------------------------------------EEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccc
Confidence 9999999999999999999988765567899999999999865
Q ss_pred h-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 178 A-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 178 ~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
. +++++++++++++|+||||+++.++++.++.+
T Consensus 124 ~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l 161 (168)
T d1u8za_ 124 KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161 (168)
T ss_dssp GCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred cccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence 3 67889999999999999999977777766543
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=7.1e-29 Score=211.93 Aligned_cols=148 Identities=18% Similarity=0.190 Sum_probs=115.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEeecc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~ 97 (329)
+||+++|++|||||||++++.+..+. .+.||.+..+.+ ++++.+.+.+|||+|++.++.++..+++++|+++
T Consensus 2 fKi~lvG~~~vGKTsLi~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~i---- 76 (168)
T d2gjsa1 2 YKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYV---- 76 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEE----
T ss_pred eEEEEECCCCcCHHHHHHHHhCCccC-CcCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhc----
Confidence 69999999999999999999988765 345666666543 5678899999999999999999999999999999
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN 177 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~ 177 (329)
+|||++++++|+++..|+.++.......++|++|||||+|+.+
T Consensus 77 -------------------------------------lv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~ 119 (168)
T d2gjsa1 77 -------------------------------------IVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 119 (168)
T ss_dssp -------------------------------------EEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGG
T ss_pred -------------------------------------eeccccccccccccccccchhhcccccccceEEEeecccchhh
Confidence 9999999999999999999987765567899999999999875
Q ss_pred h-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 178 A-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 178 ~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
. .++++++++++++|+||||+++.+.++.++.+
T Consensus 120 ~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l 157 (168)
T d2gjsa1 120 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV 157 (168)
T ss_dssp GCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHH
T ss_pred hcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHH
Confidence 4 56889999999999999999977677666544
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=7.9e-29 Score=212.59 Aligned_cols=152 Identities=18% Similarity=0.283 Sum_probs=134.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
.+.+||+++|++|||||||++++.++++...+.||.+..+.. +++..+.+.+||++|++++...+..+++++++++
T Consensus 4 ~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i- 82 (173)
T d2fn4a1 4 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL- 82 (173)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE-
T ss_pred CCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceeee-
Confidence 467999999999999999999999999998888887755543 5677899999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||+++++||+.+..|+..+.+.....++|++|||||+|
T Consensus 83 ----------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~D 122 (173)
T d2fn4a1 83 ----------------------------------------LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 122 (173)
T ss_dssp ----------------------------------------EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGG
T ss_pred ----------------------------------------eecccccccccchhhhhhHHHHHHhccCCCceEEEEEeec
Confidence 9999999999999999999887655557899999999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+.+. .++++++++++++|+||||+++.+.+++++.+
T Consensus 123 l~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l 163 (173)
T d2fn4a1 123 LESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQL 163 (173)
T ss_dssp GGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred hhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHHHHH
Confidence 8653 57899999999999999999977777776554
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=1.2e-28 Score=210.94 Aligned_cols=149 Identities=21% Similarity=0.261 Sum_probs=131.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
..+||+++|++|||||||++++.++++.+.+.||++..+.+ ++...+.+.+||++|++.+..+++.+++++|+++
T Consensus 3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~l-- 80 (169)
T d1x1ra1 3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL-- 80 (169)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE--
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEE--
Confidence 35899999999999999999999999988899999877654 4677899999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++|++||+++..|+.++.+.....++|++++|||+|+
T Consensus 81 ---------------------------------------lv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl 121 (169)
T d1x1ra1 81 ---------------------------------------IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL 121 (169)
T ss_dssp ---------------------------------------EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTC
T ss_pred ---------------------------------------EecccccchhhhccchhhHHHHhhccccCccEEEEecccch
Confidence 99999999999999999999877655578999999999998
Q ss_pred CCh-----hhHHHHHHHhCCcEEEEeccchH-HHHHHhh
Q psy2970 176 PNA-----LDEKELIDRIMIDFWITLTLLIR-WCESFLH 208 (329)
Q Consensus 176 ~~~-----~e~~~l~~~~~~~~~etSAk~~~-~~~~~l~ 208 (329)
.+. +++++++++++++|+|||||+.+ +.++.+.
T Consensus 122 ~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~ 160 (169)
T d1x1ra1 122 MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH 160 (169)
T ss_dssp STTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHH
T ss_pred hhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHH
Confidence 764 57889999999999999999843 4455443
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=9.6e-29 Score=210.26 Aligned_cols=151 Identities=16% Similarity=0.278 Sum_probs=133.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
+++||+++|++|||||||++++..++|.+.+.||++..+.. ++...+.+.+||++|++.+..+++.+++++|+++
T Consensus 2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i-- 79 (167)
T d1c1ya_ 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA-- 79 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE--
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeE--
Confidence 57999999999999999999999999999999999977764 4678899999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||+++++||+++..|+..+.+.....++|++|||||+|+
T Consensus 80 ---------------------------------------lv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl 120 (167)
T d1c1ya_ 80 ---------------------------------------LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL 120 (167)
T ss_dssp ---------------------------------------EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTC
T ss_pred ---------------------------------------EeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCc
Confidence 99999999999999999999877555678999999999999
Q ss_pred CCh-----hhHHHHHHHh-CCcEEEEeccchHHHHHHhhhh
Q psy2970 176 PNA-----LDEKELIDRI-MIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 176 ~~~-----~e~~~l~~~~-~~~~~etSAk~~~~~~~~l~~i 210 (329)
... .++..+++++ +++|+||||+++.+.++.++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~l 161 (167)
T d1c1ya_ 121 EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL 161 (167)
T ss_dssp GGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred ccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHHH
Confidence 764 4567888875 6899999999977777766543
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.2e-28 Score=210.41 Aligned_cols=152 Identities=20% Similarity=0.328 Sum_probs=131.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
.+++||+++|++|||||||++++.++.+.+.+.||.+..+.. +++..+.+.+||++|++.+...+..+++.+|+++
T Consensus 3 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i- 81 (171)
T d2erya1 3 QEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFL- 81 (171)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEE-
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEE-
Confidence 467999999999999999999999999998999998866653 5677889999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||.++++||+.+..|+.++.+.....+.|++|||||+|
T Consensus 82 ----------------------------------------lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~D 121 (171)
T d2erya1 82 ----------------------------------------LVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKAD 121 (171)
T ss_dssp ----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTT
T ss_pred ----------------------------------------EeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccc
Confidence 9999999999999999999887765567899999999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+.+. .++++++++++++|+||||+++.+++++++.+
T Consensus 122 l~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l 162 (171)
T d2erya1 122 LDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHEL 162 (171)
T ss_dssp CTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred hhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHH
Confidence 9754 57889999999999999999977777776655
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=9.4e-29 Score=211.17 Aligned_cols=147 Identities=20% Similarity=0.248 Sum_probs=125.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
++||+++|++|||||||++++..+.|.+.+.||++.++.. .+++.+.+++||++|++.+. ....+++.+++++
T Consensus 2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~i--- 77 (168)
T d2atva1 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFV--- 77 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEE---
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccce---
Confidence 6899999999999999999999999999999999988764 36777899999999998874 5567899999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+.+..|+..........++|+++||||+|+.
T Consensus 78 --------------------------------------lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~ 119 (168)
T d2atva1 78 --------------------------------------LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD 119 (168)
T ss_dssp --------------------------------------EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG
T ss_pred --------------------------------------eecccCCccchhhhhhhcccccccccccCcceeeeccchhhh
Confidence 999999999999999887655544445789999999999986
Q ss_pred Ch-----hhHHHHHHHhCCcEEEEeccchH-HHHHHhh
Q psy2970 177 NA-----LDEKELIDRIMIDFWITLTLLIR-WCESFLH 208 (329)
Q Consensus 177 ~~-----~e~~~l~~~~~~~~~etSAk~~~-~~~~~l~ 208 (329)
+. +++++++++++++|+||||+++. +.++.+.
T Consensus 120 ~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~ 157 (168)
T d2atva1 120 HSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFY 157 (168)
T ss_dssp GGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHH
T ss_pred hhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHH
Confidence 43 67889999999999999999854 2444443
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=8.5e-29 Score=210.01 Aligned_cols=148 Identities=22% Similarity=0.413 Sum_probs=130.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
.+||+++|++|||||||+++|.++++...+.||++.++.. .++..+.+.+|||+|++++..++..+++++++++
T Consensus 2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i-- 79 (164)
T d1z2aa1 2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV-- 79 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE--
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEE--
Confidence 4799999999999999999999999988899999876553 4566789999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++++|+++..|+.++.+. ..++|++|||||+|+
T Consensus 80 ---------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~iilVgnK~Dl 118 (164)
T d1z2aa1 80 ---------------------------------------LVFSTTDRESFEAISSWREKVVAE--VGDIPTALVQNKIDL 118 (164)
T ss_dssp ---------------------------------------EEEETTCHHHHHTHHHHHHHHHHH--HCSCCEEEEEECGGG
T ss_pred ---------------------------------------EEEeccchhhhhhccccccccccc--CCCceEEEeeccCCc
Confidence 999999999999999999988764 357999999999998
Q ss_pred CCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 176 PNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 176 ~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
.++ .++++++++++++|+||||+++.+.++.++.+
T Consensus 119 ~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l 158 (164)
T d1z2aa1 119 LDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 158 (164)
T ss_dssp GGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred ccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHH
Confidence 654 56889999999999999999977677666544
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=3.5e-28 Score=206.78 Aligned_cols=150 Identities=23% Similarity=0.342 Sum_probs=132.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
+++||+++|++|||||||+++|..++|.+.+.||.+..+.. .+.....+.+||++|++++..++..+++++++++
T Consensus 3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i- 81 (167)
T d1z0ja1 3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI- 81 (167)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE-
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE-
Confidence 68999999999999999999999999998999998877654 3456678899999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++++++|+.+..|+..+.+.. ..+.|++|||||+|
T Consensus 82 ----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilvgnK~D 120 (167)
T d1z0ja1 82 ----------------------------------------IVYDITKEETFSTLKNWVRELRQHG-PPSIVVAIAGNKCD 120 (167)
T ss_dssp ----------------------------------------EEEETTCHHHHHHHHHHHHHHHHHS-CTTSEEEEEEECTT
T ss_pred ----------------------------------------EEeeechhhhhhhHHHhhhhhhhcc-CCcceEEEecccch
Confidence 9999999999999999998876543 46899999999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+.+. .++++++++++++|+||||+++.++++.+..+
T Consensus 121 l~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l 161 (167)
T d1z0ja1 121 LTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 161 (167)
T ss_dssp CGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred hccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH
Confidence 9653 57889999999999999999977777766544
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2.1e-28 Score=210.04 Aligned_cols=149 Identities=21% Similarity=0.319 Sum_probs=130.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+.||+++|++|||||||++++..+.+.+.+.||++..... ++.+.+.+.+||++|++.+..++..+++++|+++
T Consensus 2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i--- 78 (177)
T d1kmqa_ 2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL--- 78 (177)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE---
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhh---
Confidence 5799999999999999999999999998999999866643 5678889999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||+++++||+++..|+...+... ..++|++|||||+|+.
T Consensus 79 --------------------------------------lv~d~~~~~Sf~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~ 119 (177)
T d1kmqa_ 79 --------------------------------------MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLR 119 (177)
T ss_dssp --------------------------------------EEEETTCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECGGGT
T ss_pred --------------------------------------hhcccchhHHHHHHHHHHHHHHHHh-CCCCceEEeeeccccc
Confidence 9999999999999998877776643 3689999999999996
Q ss_pred Ch-----------------hhHHHHHHHhC-CcEEEEeccchHHHHHHhhhh
Q psy2970 177 NA-----------------LDEKELIDRIM-IDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 177 ~~-----------------~e~~~l~~~~~-~~~~etSAk~~~~~~~~l~~i 210 (329)
+. .++++++++++ .+|+||||+++.+++++++.+
T Consensus 120 ~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt~~gi~e~F~~i 171 (177)
T d1kmqa_ 120 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 171 (177)
T ss_dssp TCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHH
T ss_pred chhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHH
Confidence 42 45778999998 589999999977777776554
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=3.4e-28 Score=206.67 Aligned_cols=151 Identities=20% Similarity=0.298 Sum_probs=135.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
+++||+++|++|||||||+++|.++.+...+.||++..+.. ..++.+.+.+||++|++.+...++.+++.+++++
T Consensus 2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~i-- 79 (166)
T d1ctqa_ 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL-- 79 (166)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEE--
T ss_pred CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhcccccc--
Confidence 47999999999999999999999999998899999987654 4567789999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++.+|+.+..|+..+.+.....++|+++||||+|+
T Consensus 80 ---------------------------------------iv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 120 (166)
T d1ctqa_ 80 ---------------------------------------CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120 (166)
T ss_dssp ---------------------------------------EEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTC
T ss_pred ---------------------------------------eeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccc
Confidence 99999999999999999998877655578999999999999
Q ss_pred CCh----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 176 PNA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 176 ~~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
... .++++++++++++|+||||+++.++++++..+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i 159 (166)
T d1ctqa_ 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159 (166)
T ss_dssp SCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHH
Confidence 764 67889999999999999999977777766544
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=4.2e-28 Score=205.01 Aligned_cols=149 Identities=20% Similarity=0.371 Sum_probs=132.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+||+++|++|||||||++++.++++...+.|+++..... .++..+.+.+||++|++.+...+..+++.+++++
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i--- 77 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAV--- 77 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEE---
T ss_pred CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEE---
Confidence 699999999999999999999999998899998876653 3567799999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++.+|+++..|+.++.... ..++|++|||||+|+.
T Consensus 78 --------------------------------------lv~d~~~~~s~~~i~~~~~~~~~~~-~~~~~iilvgnK~Dl~ 118 (164)
T d1yzqa1 78 --------------------------------------VVYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLA 118 (164)
T ss_dssp --------------------------------------EEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCG
T ss_pred --------------------------------------EeeccccccchhhhHhhHHHHHHhc-CCCceEEEEecccchh
Confidence 9999999999999999999876542 3689999999999997
Q ss_pred Ch-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 177 NA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 177 ~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+. .++++++++++++|+||||+++.+.+++++.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~ 158 (164)
T d1yzqa1 119 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 158 (164)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHH
Confidence 54 578899999999999999999777777776654
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=99.95 E-value=5.1e-28 Score=205.14 Aligned_cols=151 Identities=75% Similarity=1.142 Sum_probs=135.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecce
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~ 98 (329)
+++||+++|++|||||||+++|.++++.+.+.||++.++..++.+++.+.+||+||++.+...+..++..+++++
T Consensus 1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i----- 75 (164)
T d1zd9a1 1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV----- 75 (164)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEE-----
T ss_pred CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeeeeeeeeEEEEEeeccccccccccccccccccchhh-----
Confidence 579999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred eeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh
Q psy2970 99 YIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA 178 (329)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~ 178 (329)
+|||++++++|++...++..+++.....++|++|||||.|+.+.
T Consensus 76 ------------------------------------~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~ 119 (164)
T d1zd9a1 76 ------------------------------------YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 119 (164)
T ss_dssp ------------------------------------EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred ------------------------------------cccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchh
Confidence 99999999999999999999998877789999999999999876
Q ss_pred hhHHHHHHHhC--------CcEEEEeccchHHHHHHhhhh
Q psy2970 179 LDEKELIDRIM--------IDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 179 ~e~~~l~~~~~--------~~~~etSAk~~~~~~~~l~~i 210 (329)
.+..++.+.++ .+++|+||+++.+.++.++.+
T Consensus 120 ~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l 159 (164)
T d1zd9a1 120 LDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 159 (164)
T ss_dssp CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHH
Confidence 55555555543 478999999977777766543
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=3.6e-29 Score=214.48 Aligned_cols=148 Identities=23% Similarity=0.381 Sum_probs=126.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
++||+++|++|||||||++++..+++...+.||++.++.. .++..+.+.+|||+|++.+..++..+++++++++
T Consensus 3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i-- 80 (170)
T d1i2ma_ 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAI-- 80 (170)
T ss_dssp EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEE--
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchh--
Confidence 5899999999999999999999999998999999987654 3567799999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||+++++||+++..|+.++.+. ..++|++|||||+|+
T Consensus 81 ---------------------------------------lv~d~~~~~Sf~~~~~~~~~~~~~--~~~~piilvgnK~Dl 119 (170)
T d1i2ma_ 81 ---------------------------------------IMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDI 119 (170)
T ss_dssp ---------------------------------------EEEETTSGGGGTTHHHHHHHHHHH--HCSCCEEEEEECCCC
T ss_pred ---------------------------------------hccccccccccchhHHHHHHHhhc--cCCCceeeecchhhh
Confidence 999999999999999999988764 358999999999999
Q ss_pred CCh---hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 176 PNA---LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 176 ~~~---~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
... .++.+++++.+++|+||||+++.+.++.++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l 157 (170)
T d1i2ma_ 120 KDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 157 (170)
T ss_dssp SCSCCTTTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHH
T ss_pred hhhhhhhHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 775 45667889999999999999966666655444
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=5e-28 Score=209.93 Aligned_cols=151 Identities=15% Similarity=0.213 Sum_probs=130.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
+.-+||+++|++|||||||++++..+.|...+.||++..... ..+..+.+.+||++|++.+..++..+++++|+++
T Consensus 7 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~i- 85 (185)
T d2atxa1 7 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL- 85 (185)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE-
T ss_pred CcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhcccccceee-
Confidence 456899999999999999999999999998999999866543 4567789999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||+++++||++...|+...++.. ..++|+++||||+|
T Consensus 86 ----------------------------------------lv~d~t~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~D 124 (185)
T d2atxa1 86 ----------------------------------------ICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQID 124 (185)
T ss_dssp ----------------------------------------EEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTT
T ss_pred ----------------------------------------eccccchHHHHHHHHHHHHHHHHhc-CCCCCeeEeeeccc
Confidence 9999999999999888777776643 46899999999999
Q ss_pred CCCh-----------------hhHHHHHHHhC-CcEEEEeccchHHHHHHhhhh
Q psy2970 175 LPNA-----------------LDEKELIDRIM-IDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 175 l~~~-----------------~e~~~l~~~~~-~~~~etSAk~~~~~~~~l~~i 210 (329)
+.+. +++++++++++ ++|+||||+++.+.+++++.+
T Consensus 125 l~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~SAk~~~gv~e~F~~l 178 (185)
T d2atxa1 125 LRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEA 178 (185)
T ss_dssp STTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHH
T ss_pred cccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEecCCCCcCHHHHHHHH
Confidence 8652 45778999998 799999999977777766543
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=3.4e-28 Score=206.80 Aligned_cols=149 Identities=23% Similarity=0.386 Sum_probs=124.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
.+||+++|++|||||||++++.+++|.+.+.||.+..+.. .++..+.+.+||++|+++++.++..+++++|+++
T Consensus 3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i-- 80 (167)
T d1z08a1 3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI-- 80 (167)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE--
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeE--
Confidence 4899999999999999999999999999999999876653 3566799999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||+++++||+++..|+..+... ...+.|++|||||+|+
T Consensus 81 ---------------------------------------~v~d~~~~~Sf~~~~~~~~~~~~~-~~~~~~~ilvgnK~Dl 120 (167)
T d1z08a1 81 ---------------------------------------LVYDITDEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDL 120 (167)
T ss_dssp ---------------------------------------EEEETTCHHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGG
T ss_pred ---------------------------------------EEEeCCchhHHHhhhhhhhhcccc-cccccceeeecccccc
Confidence 999999999999999999877543 2367899999999998
Q ss_pred CCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 176 PNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 176 ~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
.++ .++++++++++++|+||||+++.++++++..+
T Consensus 121 ~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l 160 (167)
T d1z08a1 121 EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 160 (167)
T ss_dssp GGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred ccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHH
Confidence 653 67899999999999999999977777766544
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1e-27 Score=203.62 Aligned_cols=149 Identities=19% Similarity=0.301 Sum_probs=130.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
-+||+++|++|||||||++++.++++...+.|+.+.++. .+++..+.+.+||++|+++++.++..+++.+|+++
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~i-- 81 (166)
T d1z0fa1 4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL-- 81 (166)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE--
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEE--
Confidence 479999999999999999999999998888887776554 35677889999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++++|+.+..|+..+.+. .....|++++|||+|+
T Consensus 82 ---------------------------------------lv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl 121 (166)
T d1z0fa1 82 ---------------------------------------MVYDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADL 121 (166)
T ss_dssp ---------------------------------------EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTC
T ss_pred ---------------------------------------EEeccCchHHHHHHHHHHHHHHhh-ccccceEEEEcccccc
Confidence 999999999999999999887654 3467899999999998
Q ss_pred CCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 176 PNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 176 ~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
... .++++++++++++|+||||+++.++++++..+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i 161 (166)
T d1z0fa1 122 EAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEA 161 (166)
T ss_dssp GGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred hhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 654 56889999999999999999977777776543
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=7.5e-28 Score=205.42 Aligned_cols=148 Identities=23% Similarity=0.347 Sum_probs=129.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
.+||+++|++|||||||++++..+++...+.++++.++.. ++++.+++.+|||||++.+..+++.+++++++++
T Consensus 5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i-- 82 (171)
T d2ew1a1 5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI-- 82 (171)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE--
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEE--
Confidence 4899999999999999999999999988888888776543 4577789999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|+|++++.+++....|+..+.+. ...++|++|||||+|+
T Consensus 83 ---------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ilvgnK~D~ 122 (171)
T d2ew1a1 83 ---------------------------------------LTYDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDL 122 (171)
T ss_dssp ---------------------------------------EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGG
T ss_pred ---------------------------------------Eeeecccchhhhhhhhhhhhhccc-ccccccEEEEEeeccc
Confidence 999999999999999999888664 2357899999999998
Q ss_pred CCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhh
Q psy2970 176 PNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHH 209 (329)
Q Consensus 176 ~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~ 209 (329)
.+. .+++++++..++++++|||+++.+.++++..
T Consensus 123 ~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~ 161 (171)
T d2ew1a1 123 AERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLD 161 (171)
T ss_dssp GGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred ccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHH
Confidence 654 5688899999999999999997777776543
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.95 E-value=1.4e-27 Score=203.75 Aligned_cols=150 Identities=20% Similarity=0.397 Sum_probs=130.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
-.+||+++|++|||||||++++.++++.+.+.|+.+.+... .....+.+++|||||++++..+++.+++++|++|
T Consensus 4 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~i- 82 (169)
T d3raba_ 4 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI- 82 (169)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEE-
T ss_pred eEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEE-
Confidence 45899999999999999999999999988888888866543 3566789999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||+++++++.....|+..+... ...+.|+++||||+|
T Consensus 83 ----------------------------------------lv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D 121 (169)
T d3raba_ 83 ----------------------------------------LMYDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCD 121 (169)
T ss_dssp ----------------------------------------EEEETTCHHHHHTHHHHHHHHHHH-CCSCCEEEEEEECTT
T ss_pred ----------------------------------------EEEECccchhhhhhhhhhhhhhcc-cCCcceEEEEEeecc
Confidence 999999999999999988776543 346789999999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+.+. .++++++++++++++||||+++.+++++++.+
T Consensus 122 ~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l 162 (169)
T d3raba_ 122 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL 162 (169)
T ss_dssp CGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred cccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHHH
Confidence 8754 56788999999999999999977777776544
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.3e-27 Score=208.06 Aligned_cols=150 Identities=16% Similarity=0.249 Sum_probs=129.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
+.+||+++|++|||||||++++..++|...+.||++..+.. ++++.+.+.+||++|+++++.++..+++.+|+++
T Consensus 2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i-- 79 (191)
T d2ngra_ 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL-- 79 (191)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE--
T ss_pred CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceee--
Confidence 36899999999999999999999999998999999976653 4667789999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||+++++||+++..|+.+.... ...++|+++||||+|+
T Consensus 80 ---------------------------------------lv~d~~~~~Sf~~~~~~~~~~~~~-~~~~~~i~lvgnK~Dl 119 (191)
T d2ngra_ 80 ---------------------------------------VCFSVVSPSSFENVKEKWVPEITH-HCPKTPFLLVGTQIDL 119 (191)
T ss_dssp ---------------------------------------EEEETTCHHHHHHHHHTHHHHHHH-HCTTCCEEEEEECGGG
T ss_pred ---------------------------------------cccccchHHHHHHHHHHHHHHHhh-cCCCCceEEEeccccc
Confidence 999999999999999877776654 2468999999999998
Q ss_pred CC-----------------hhhHHHHHHHhC-CcEEEEeccchHHHHHHhhhh
Q psy2970 176 PN-----------------ALDEKELIDRIM-IDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 176 ~~-----------------~~e~~~l~~~~~-~~~~etSAk~~~~~~~~l~~i 210 (329)
.+ .+++++++++++ ++|+||||+++.+.+++++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~V~e~f~~l 172 (191)
T d2ngra_ 120 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172 (191)
T ss_dssp GGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTTTCTTHHHHHHHH
T ss_pred cccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHH
Confidence 53 256778898875 799999999976677766543
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2.7e-27 Score=201.80 Aligned_cols=150 Identities=24% Similarity=0.367 Sum_probs=132.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
-++||+++|++|||||||+++|..+++...+.||.+..+.. .....+.+.+||++|++.+..++..+++++++++
T Consensus 5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i- 83 (170)
T d1r2qa_ 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI- 83 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE-
T ss_pred eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEE-
Confidence 36899999999999999999999999998889999887764 3566789999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++++++|+.+..|+..+.+. ..+++|++|||||+|
T Consensus 84 ----------------------------------------lv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~D 122 (170)
T d1r2qa_ 84 ----------------------------------------VVYDITNEESFARAKNWVKELQRQ-ASPNIVIALSGNKAD 122 (170)
T ss_dssp ----------------------------------------EEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGG
T ss_pred ----------------------------------------EEeccchhhHHHHHHHHhhhhhhc-cCCCceEEeeccccc
Confidence 999999999999999999888664 346899999999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+.+. +++++++++++++|+||||+++.+.+++++.+
T Consensus 123 l~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l 163 (170)
T d1r2qa_ 123 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163 (170)
T ss_dssp GGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred ccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHH
Confidence 8654 56889999999999999999977777776654
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=99.95 E-value=1.4e-27 Score=205.41 Aligned_cols=164 Identities=26% Similarity=0.519 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchH
Q psy2970 3 VLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMW 82 (329)
Q Consensus 3 ~~~~~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~ 82 (329)
++++++++++ ..+++++||+++|++|||||||++++..+++. ...||.+.....++.+++.+.+||+||++.++..+
T Consensus 2 ~~~~~~~~~l--~~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 78 (182)
T d1moza_ 2 NIFSSMFDKL--WGSNKELRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYW 78 (182)
T ss_dssp HHHHHHHGGG--TTCSSCEEEEEEEETTSSHHHHHHHTCCSEEE-EECSSTTCCEEEEEETTEEEEEEEEC----CCTTG
T ss_pred hhHHHHHHHH--hCCCceEEEEEECCCCCCHHHHHHHHhcCCCC-ccccccceEEEEEeeCCEEEEEEecccccccchhH
Confidence 3555555432 23688999999999999999999999988775 45688888888888889999999999999999999
Q ss_pred HHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCC
Q psy2970 83 ERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLI 162 (329)
Q Consensus 83 ~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~ 162 (329)
..+++.+++++ +|||++++.++.+...++.++++.....
T Consensus 79 ~~~~~~~~~ii-----------------------------------------~v~d~~d~~s~~~~~~~l~~~~~~~~~~ 117 (182)
T d1moza_ 79 RCYYADTAAVI-----------------------------------------FVVDSTDKDRMSTASKELHLMLQEEELQ 117 (182)
T ss_dssp GGTTTTEEEEE-----------------------------------------EEEETTCTTTHHHHHHHHHHHTTSSTTS
T ss_pred HhhhccceeEE-----------------------------------------EEeeecccccchhHHHHHHHHHHhhccC
Confidence 99999999999 9999999999999999999888877778
Q ss_pred CCcEEEEEEcCCCCChhhHHHHHHHhC--------CcEEEEeccchHHHHHHhhhh
Q psy2970 163 GIPILVLGNKRDLPNALDEKELIDRIM--------IDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 163 ~iPIiLVgNK~Dl~~~~e~~~l~~~~~--------~~~~etSAk~~~~~~~~l~~i 210 (329)
++|++||+||+|+.+..+.+++.++++ +.++||||+++.++++.++.+
T Consensus 118 ~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~~~~l 173 (182)
T d1moza_ 118 DAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWL 173 (182)
T ss_dssp SCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHH
T ss_pred CcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCEEEEEECCCCCCHHHHHHHH
Confidence 899999999999987655555555543 468999999977777766544
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.9e-27 Score=205.37 Aligned_cols=152 Identities=18% Similarity=0.261 Sum_probs=130.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
+.+++||+++|++|||||||+++|+.++|...+.||++..... .+.+.+.+.+||++|++.+..++..+++++|+++
T Consensus 2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 81 (183)
T d1mh1a_ 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (183)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence 3578999999999999999999999999998999999866543 4677889999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||+++++||+++..|+...++.. ..++|++|||||+
T Consensus 82 -----------------------------------------lv~d~~~~~sf~~i~~~~~~~~~~~-~~~~piilvgnK~ 119 (183)
T d1mh1a_ 82 -----------------------------------------ICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKL 119 (183)
T ss_dssp -----------------------------------------EEEETTCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECH
T ss_pred -----------------------------------------eeeccchHHHHHHHHHHHHHHHHHh-CCCCcEEEEeecc
Confidence 9999999999999988666665542 4679999999999
Q ss_pred CCCCh-----------------hhHHHHHHHhC-CcEEEEeccchHHHHHHhhhh
Q psy2970 174 DLPNA-----------------LDEKELIDRIM-IDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 174 Dl~~~-----------------~e~~~l~~~~~-~~~~etSAk~~~~~~~~l~~i 210 (329)
|+.+. .++..++++++ ++|+||||+++.+++++++.+
T Consensus 120 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SAk~~~~V~e~F~~l 174 (183)
T d1mh1a_ 120 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 174 (183)
T ss_dssp HHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHH
T ss_pred cchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCCCCCcCHHHHHHHH
Confidence 98542 35677888887 799999999977777766543
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=4.8e-27 Score=203.25 Aligned_cols=149 Identities=19% Similarity=0.313 Sum_probs=128.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
++||+++|++|||||||++++..++|...+.||++..+.. +++..+.+++||++|++.+...+..+++++|+++
T Consensus 2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i--- 78 (179)
T d1m7ba_ 2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL--- 78 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE---
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhh---
Confidence 5899999999999999999999999998999998865543 4678899999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||+++++||+.+..++...+... ..++|++|||||+|+.
T Consensus 79 --------------------------------------lv~d~~~~~Sf~~~~~~~~~~~~~~-~~~~~iilVgnK~Dl~ 119 (179)
T d1m7ba_ 79 --------------------------------------ICFDISRPETLDSVLKKWKGEIQEF-CPNTKMLLVGCKSDLR 119 (179)
T ss_dssp --------------------------------------EEEETTCHHHHHHHHHTHHHHHHHH-CTTCEEEEEEECGGGG
T ss_pred --------------------------------------eeeecccCCCHHHHHHHHHHHHhcc-CCcceEEEEEeccccc
Confidence 9999999999999998887766542 3589999999999985
Q ss_pred C-----------------hhhHHHHHHHhC-CcEEEEeccch-HHHHHHhhhh
Q psy2970 177 N-----------------ALDEKELIDRIM-IDFWITLTLLI-RWCESFLHHF 210 (329)
Q Consensus 177 ~-----------------~~e~~~l~~~~~-~~~~etSAk~~-~~~~~~l~~i 210 (329)
. .+++.+++++++ .+|+||||+++ +..+++++.+
T Consensus 120 ~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~~~n~i~~~F~~~ 172 (179)
T d1m7ba_ 120 TDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 172 (179)
T ss_dssp GCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHH
T ss_pred ccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCCCCcCHHHHHHHH
Confidence 3 256788999988 58999999995 4577777554
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=6.5e-27 Score=197.48 Aligned_cols=139 Identities=25% Similarity=0.429 Sum_probs=122.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccc-hHHHHhhccceeEe
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRS-MWERYCRGVNAIVW 94 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~-~~~~~~~~ad~iI~ 94 (329)
-+||+++|++|||||||++++..+++...+.+|.+..+. .+......+.+||++|.+.+.. .++.+++++|+++
T Consensus 2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i- 80 (165)
T d1z06a1 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV- 80 (165)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE-
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE-
Confidence 489999999999999999999999998888888875553 2567788999999999887754 5788999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||++|+++|+++..|+.++.+.....++|++|||||+|
T Consensus 81 ----------------------------------------lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~D 120 (165)
T d1z06a1 81 ----------------------------------------FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCD 120 (165)
T ss_dssp ----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTT
T ss_pred ----------------------------------------EEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEecccc
Confidence 9999999999999999999998766667899999999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccc
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLL 199 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~ 199 (329)
+.++ +++++++++++++|+||||++
T Consensus 121 l~~~~~v~~~~~~~~~~~~~~~~~e~SAkt 150 (165)
T d1z06a1 121 LRSAIQVPTDLAQKFADTHSMPLFETSAKN 150 (165)
T ss_dssp CGGGCCSCHHHHHHHHHHTTCCEEECCSSS
T ss_pred chhccchhHHHHHHHHHHCCCEEEEEeccc
Confidence 8654 568899999999999999997
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.94 E-value=3.5e-27 Score=201.63 Aligned_cols=157 Identities=32% Similarity=0.605 Sum_probs=136.3
Q ss_pred HHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccce
Q psy2970 12 FKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNA 91 (329)
Q Consensus 12 ~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~ 91 (329)
+.+.|.++++||+++|++|||||||++++..+.+. ...||.+..+.....+.+.+.+||+||++.++..+..+++.+++
T Consensus 4 ~~~~~~~k~~kIvlvG~~~vGKTSli~rl~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (173)
T d1e0sa_ 4 LSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQG 82 (173)
T ss_dssp HHHHHTTCCEEEEEEEETTSSHHHHHHHTTCCCCE-EEEEETTEEEEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCE
T ss_pred hhhhhCCCeEEEEEECCCCCCHHHHHHHHhcCCCC-CccceeeeeEEEeeccceeeEEecCCCcchhhhHHHhhhcccce
Confidence 45667889999999999999999999999988875 45678888888888889999999999999999999999999999
Q ss_pred eEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEE
Q psy2970 92 IVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGN 171 (329)
Q Consensus 92 iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgN 171 (329)
++ +|||+++++++..+..++...++.....+.|++||+|
T Consensus 83 ii-----------------------------------------~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~N 121 (173)
T d1e0sa_ 83 LI-----------------------------------------FVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 121 (173)
T ss_dssp EE-----------------------------------------EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEE
T ss_pred EE-----------------------------------------EEEecccchhHHHHHHHHHHHhhhcccccceeeeeee
Confidence 99 9999999999999999999998877778899999999
Q ss_pred cCCCCChhhHHHHHHHhC--------CcEEEEeccchHHHHHHhhhh
Q psy2970 172 KRDLPNALDEKELIDRIM--------IDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 172 K~Dl~~~~e~~~l~~~~~--------~~~~etSAk~~~~~~~~l~~i 210 (329)
|+|++++....++.++++ +.+++|||+++.+.++.++.+
T Consensus 122 K~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~~~~l 168 (173)
T d1e0sa_ 122 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 168 (173)
T ss_dssp CTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHH
Confidence 999987655555555443 458999999988877777654
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=4.4e-27 Score=201.28 Aligned_cols=148 Identities=19% Similarity=0.296 Sum_probs=125.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+||+++|++|||||||++++.++++.+.+.++.+..... ...+.+.+.+||++|++.+..+++.+++.+|+++
T Consensus 4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i--- 80 (173)
T d2a5ja1 4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL--- 80 (173)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE---
T ss_pred EEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEE---
Confidence 799999999999999999999999887777777655442 4566789999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++++|+++..|+.++.+.. ..++|++|||||+|+.
T Consensus 81 --------------------------------------lv~d~~~~~sf~~~~~~~~~~~~~~-~~~~piilv~nK~D~~ 121 (173)
T d2a5ja1 81 --------------------------------------LVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLE 121 (173)
T ss_dssp --------------------------------------EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCG
T ss_pred --------------------------------------EEEeecChHHHHhHHHHHHHHHHhC-CCCCeEEEEecCCchh
Confidence 9999999999999999999887643 4689999999999986
Q ss_pred Ch-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 177 NA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 177 ~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
.. .++..++++++++|+||||+++.+.+++++.+
T Consensus 122 ~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i 160 (173)
T d2a5ja1 122 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINT 160 (173)
T ss_dssp GGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence 53 57889999999999999999977777766554
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=9.6e-27 Score=198.01 Aligned_cols=150 Identities=25% Similarity=0.382 Sum_probs=131.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
.+||+++|++|||||||++++..++|.+.+.||.+.++.. .+++.+.+.+||++|++.+..++..+++.+|+++
T Consensus 3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~i-- 80 (170)
T d1ek0a_ 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAAL-- 80 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE--
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEE--
Confidence 4899999999999999999999999998999999977653 4567789999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++++|+++..|+.+..... ....|+++++||+|+
T Consensus 81 ---------------------------------------lv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~v~nk~d~ 120 (170)
T d1ek0a_ 81 ---------------------------------------VVYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDM 120 (170)
T ss_dssp ---------------------------------------EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGG
T ss_pred ---------------------------------------EEEeCCcccchhhhhhhhhhhcccc-ccccceeeeeccccc
Confidence 9999999999999999998776643 467899999999998
Q ss_pred CCh--------hhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 176 PNA--------LDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 176 ~~~--------~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.+. .++++++++.+++|+||||+++.+.++.++.+.
T Consensus 121 ~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~~i~ 164 (170)
T d1ek0a_ 121 LQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIG 164 (170)
T ss_dssp GGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHH
T ss_pred ccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHH
Confidence 532 568899999999999999999777777776553
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=3.4e-27 Score=203.57 Aligned_cols=151 Identities=27% Similarity=0.426 Sum_probs=131.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE--e--e----------CceEEEEEEecCCCccccchHHH
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK--I--T----------KGNVTIKVWDIGGQPRFRSMWER 84 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~--i--~----------~~~~~l~I~DtpG~e~~~~~~~~ 84 (329)
-.+||+++|++|||||||+++|.++++...+.+|.+..+.. + + ...+.+.+|||+|++.++.++..
T Consensus 4 ~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~ 83 (186)
T d2f7sa1 4 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTA 83 (186)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHH
T ss_pred EEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHH
Confidence 35899999999999999999999999988888888776542 1 1 23467999999999999999999
Q ss_pred HhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCC
Q psy2970 85 YCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGI 164 (329)
Q Consensus 85 ~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~i 164 (329)
+++++++++ +|||++++++|+.+..|+.++.......++
T Consensus 84 ~~~~~~~~i-----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 122 (186)
T d2f7sa1 84 FFRDAMGFL-----------------------------------------LMFDLTSQQSFLNVRNWMSQLQANAYCENP 122 (186)
T ss_dssp HHTTCCEEE-----------------------------------------EEEETTCHHHHHHHHHHHHTCCCCCTTTCC
T ss_pred HHhcCCEEE-----------------------------------------EEEeccccccceeeeeccchhhhhccCCCc
Confidence 999999999 999999999999999999888776666789
Q ss_pred cEEEEEEcCCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 165 PILVLGNKRDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 165 PIiLVgNK~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|++|||||+|+.+. .++++++++++++|+||||+++.++++.++.+
T Consensus 123 ~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l 173 (186)
T d2f7sa1 123 DIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETL 173 (186)
T ss_dssp EEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHH
T ss_pred eEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999654 56889999999999999999977777766554
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=7.1e-27 Score=199.52 Aligned_cols=150 Identities=23% Similarity=0.346 Sum_probs=131.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
-.+||+++|++|||||||++++..+++.+.+.||.+..... .+.....+.+|||||++++..+++.+++.+++++
T Consensus 4 ~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i- 82 (174)
T d2bmea1 4 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL- 82 (174)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE-
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEE-
Confidence 35899999999999999999999999988889988877654 3567789999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||.+++++|+++..|+..+.... ..++|+++||||+|
T Consensus 83 ----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~D 121 (174)
T d2bmea1 83 ----------------------------------------LVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKD 121 (174)
T ss_dssp ----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGG
T ss_pred ----------------------------------------EEEecccchhHHHHhhhhccccccc-CCceEEEEEEeccc
Confidence 9999999999999999999887643 46899999999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+... .++.+++++.+++|+||||+++.++++++..+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~l 162 (174)
T d2bmea1 122 LDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQC 162 (174)
T ss_dssp GGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred ccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHH
Confidence 8654 45778999999999999999977777776544
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.3e-26 Score=202.35 Aligned_cols=149 Identities=25% Similarity=0.405 Sum_probs=131.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
-+||+|+|++|||||||++++..+.+...+.||.+..+.. +.+..+.+.+|||||++++..++..+++++++++
T Consensus 6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i-- 83 (194)
T d2bcgy1 6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII-- 83 (194)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE--
T ss_pred EEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEE--
Confidence 4899999999999999999999999988889998876543 4677889999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||+++++++.....++..+.+. ...++|++|||||+|+
T Consensus 84 ---------------------------------------~v~d~t~~~s~~~~~~~~~~~~~~-~~~~~~iilv~nK~D~ 123 (194)
T d2bcgy1 84 ---------------------------------------IVYDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDL 123 (194)
T ss_dssp ---------------------------------------EEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTC
T ss_pred ---------------------------------------EEEeCcchhhhhhHhhhhhhhhhc-ccCCceEEEEEecccc
Confidence 999999999999999988887653 3578999999999999
Q ss_pred CCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 176 PNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 176 ~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
.+. ++...+++..++.|+|+||+++.++++.++.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~~l 163 (194)
T d2bcgy1 124 KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTM 163 (194)
T ss_dssp TTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHH
T ss_pred ccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHHHH
Confidence 874 56788899999999999999977777766554
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=99.94 E-value=1.7e-26 Score=194.93 Aligned_cols=150 Identities=26% Similarity=0.548 Sum_probs=129.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecce
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~ 98 (329)
|++||+++|++|||||||+++|.++.+. .+.||.+.....++.+++.+.+|||||++.++..+..+++.+++++
T Consensus 1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i----- 74 (165)
T d1ksha_ 1 RELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLI----- 74 (165)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEE-----
T ss_pred CcEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEeeeeeeccccccceeeeecCcchhhhhHHHhhhhhhhcce-----
Confidence 5799999999999999999999988774 6789999998889999999999999999999999999999999999
Q ss_pred eeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh
Q psy2970 99 YIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA 178 (329)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~ 178 (329)
+|||++|..++.....++.+.+......++|++||+||+|+++.
T Consensus 75 ------------------------------------~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 118 (165)
T d1ksha_ 75 ------------------------------------WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 118 (165)
T ss_dssp ------------------------------------EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred ------------------------------------eeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccc
Confidence 99999999999999999988887766788999999999999876
Q ss_pred hhHHHHHHHh--------CCcEEEEeccchHHHHHHhhhh
Q psy2970 179 LDEKELIDRI--------MIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 179 ~e~~~l~~~~--------~~~~~etSAk~~~~~~~~l~~i 210 (329)
....+..+.+ .+++++|||+++.++++.++.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l 158 (165)
T d1ksha_ 119 LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 158 (165)
T ss_dssp CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred cCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHHHH
Confidence 4444433332 2468999999977777766543
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.2e-26 Score=198.85 Aligned_cols=150 Identities=21% Similarity=0.364 Sum_probs=126.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhccceeEe
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVW 94 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~ 94 (329)
..+||+++|++|||||||++++.++++...+.++.+.... .+++..+.+.+||++|++++...+..+++.+++++
T Consensus 3 ~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i- 81 (175)
T d2f9la1 3 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL- 81 (175)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE-
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEE-
Confidence 3589999999999999999999999998777777765443 24567789999999999999999999999999999
Q ss_pred ecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCC
Q psy2970 95 TGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRD 174 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~D 174 (329)
+|||.++++||+....|+.++.+.. ..++|++|||||+|
T Consensus 82 ----------------------------------------~v~d~~~~~S~~~~~~~~~~i~~~~-~~~~piilvgnK~D 120 (175)
T d2f9la1 82 ----------------------------------------LVYDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSD 120 (175)
T ss_dssp ----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTT
T ss_pred ----------------------------------------EEEECCCcccchhHHHHHHHHHHhc-CCCCcEEEEEeeec
Confidence 9999999999999999999887653 36799999999999
Q ss_pred CCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 175 LPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 175 l~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+.+. .....+.++.+.+++||||+++.+++++++.+
T Consensus 121 l~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l 161 (175)
T d2f9la1 121 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 161 (175)
T ss_dssp CGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred ccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHH
Confidence 9764 34677888899999999999977777776554
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=99.94 E-value=1.5e-26 Score=196.82 Aligned_cols=152 Identities=30% Similarity=0.579 Sum_probs=132.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
.++++||+++|++|||||||++++.++++. ...|+.+.....++.+++.+.+||++|++.++..+..+++.+|+++
T Consensus 13 ~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~-~~~~~~~~~~~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii--- 88 (176)
T d1fzqa_ 13 PDQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILI--- 88 (176)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEE---
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhcCCCC-cceeeeeeeEEEeccCCeeEeEeeccccccchhHHHHHhhccceeE---
Confidence 567899999999999999999999999885 4457788888888888999999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||++++.+++++..++.++.......++|++||+||+|+.
T Consensus 89 --------------------------------------~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~ 130 (176)
T d1fzqa_ 89 --------------------------------------YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 130 (176)
T ss_dssp --------------------------------------EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTST
T ss_pred --------------------------------------EeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEecccc
Confidence 999999999999999999998877677889999999999998
Q ss_pred ChhhHHHHHHHh--------CCcEEEEeccchHHHHHHhhhh
Q psy2970 177 NALDEKELIDRI--------MIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 177 ~~~e~~~l~~~~--------~~~~~etSAk~~~~~~~~l~~i 210 (329)
++.+...+.+.+ .+++++|||+++.+.++.++.+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~~~l 172 (176)
T d1fzqa_ 131 TAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 172 (176)
T ss_dssp TCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHH
Confidence 775555444443 3469999999988888877644
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.8e-26 Score=196.57 Aligned_cols=149 Identities=21% Similarity=0.372 Sum_probs=114.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE-----eeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK-----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~-----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
+||+++|++|||||||+++|.++++.+.+.||.+..... .+.....+.+|||+|++++...+..+++.+++++
T Consensus 3 ~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i-- 80 (175)
T d1ky3a_ 3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCV-- 80 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEE--
T ss_pred EEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEE--
Confidence 799999999999999999999999988888887755443 2345578999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC---CcCCCCcEEEEEEc
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK---PQLIGIPILVLGNK 172 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~---~~~~~iPIiLVgNK 172 (329)
+|||++++.||+.+..|+.++.+. ....++|++|||||
T Consensus 81 ---------------------------------------lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK 121 (175)
T d1ky3a_ 81 ---------------------------------------LVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 121 (175)
T ss_dssp ---------------------------------------EEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEEC
T ss_pred ---------------------------------------EEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecc
Confidence 999999999999999999887652 23467999999999
Q ss_pred CCCCCh------hhHHHHHHHhC-CcEEEEeccchHHHHHHhhhh
Q psy2970 173 RDLPNA------LDEKELIDRIM-IDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 173 ~Dl~~~------~e~~~l~~~~~-~~~~etSAk~~~~~~~~l~~i 210 (329)
+|+.+. .++++++++++ ++|+||||+++.+.+++++.+
T Consensus 122 ~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~f~~l 166 (175)
T d1ky3a_ 122 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEI 166 (175)
T ss_dssp TTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHH
T ss_pred cchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHH
Confidence 998754 45778999986 789999999977777766544
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=4.6e-26 Score=194.04 Aligned_cols=152 Identities=24% Similarity=0.391 Sum_probs=121.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccce
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQ-DMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNA 91 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~-~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~ 91 (329)
+.-.+||+++|++|||||||++++..+++.. .+.++++.++.. .++..+.+.+|||||+++++.++..+++++|+
T Consensus 3 ~d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~ 82 (170)
T d2g6ba1 3 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 82 (170)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCce
Confidence 3456899999999999999999999998754 445666766654 45667899999999999999999999999999
Q ss_pred eEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEE
Q psy2970 92 IVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGN 171 (329)
Q Consensus 92 iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgN 171 (329)
++ +|||++++++++.+..++.++.... ....|+++|+|
T Consensus 83 ~i-----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~~ 120 (170)
T d2g6ba1 83 LL-----------------------------------------LLYDVTNKASFDNIQAWLTEIHEYA-QHDVALMLLGN 120 (170)
T ss_dssp EE-----------------------------------------EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEE
T ss_pred eE-----------------------------------------EEecCCcccchhhhhhhhhhhhhcc-CCCceEEEEEe
Confidence 99 9999999999999999998876653 35789999999
Q ss_pred cCCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 172 KRDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 172 K~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|+|+.+. .++.+++++++++|+|+||+++.++++++..+
T Consensus 121 k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~l 164 (170)
T d2g6ba1 121 KVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAI 164 (170)
T ss_dssp CCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred eechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence 9998764 56789999999999999999977777766544
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=7.9e-26 Score=194.06 Aligned_cols=150 Identities=19% Similarity=0.347 Sum_probs=132.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----EeeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMR----KITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~----~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
.+||+++|++|||||||+++|.++++.+.+.++.+..+. .+++..+.+.+|||||+++++.++..+++.+|+++
T Consensus 7 ~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii-- 84 (177)
T d1x3sa1 7 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI-- 84 (177)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE--
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEE--
Confidence 589999999999999999999999998888887776543 24667789999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDL 175 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl 175 (329)
+|||++++++++.+..|+.++.+.......|+++++||.|.
T Consensus 85 ---------------------------------------~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~ 125 (177)
T d1x3sa1 85 ---------------------------------------LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK 125 (177)
T ss_dssp ---------------------------------------EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTS
T ss_pred ---------------------------------------EEEECCCccccccchhhhhhhcccccccceeeEEEeecccc
Confidence 99999999999999999999977666678999999999998
Q ss_pred CCh----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 176 PNA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 176 ~~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
... .++++++++++++++++||+++.+.++.++.+
T Consensus 126 ~~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~l 164 (177)
T d1x3sa1 126 ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEEL 164 (177)
T ss_dssp SSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred ccccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHH
Confidence 653 56788999999999999999977777766544
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=4.9e-26 Score=192.84 Aligned_cols=148 Identities=22% Similarity=0.400 Sum_probs=124.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+||+++|++|||||||++++..+++.+.+.||++.++.. +++..+.+.+|||||++.+..+++.+++++++++
T Consensus 3 ~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i--- 79 (166)
T d1g16a_ 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGII--- 79 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE---
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE---
Confidence 799999999999999999999999998899999877653 4577789999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLP 176 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~ 176 (329)
+|||.+++++++++..++....... ....|+++++||.|+.
T Consensus 80 --------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~i~~~~k~d~~ 120 (166)
T d1g16a_ 80 --------------------------------------LVYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDME 120 (166)
T ss_dssp --------------------------------------EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCT
T ss_pred --------------------------------------EEEECCCccCHHHHHhhhhhhhccc-cCcceeeeecchhhhh
Confidence 9999999999999998887776543 4678899999999987
Q ss_pred Ch----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 177 NA----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 177 ~~----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
+. ++++++++++++++++|||+++.+++++++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l 158 (166)
T d1g16a_ 121 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 158 (166)
T ss_dssp TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHH
Confidence 64 67888999999999999999977777776544
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.93 E-value=1.7e-26 Score=197.59 Aligned_cols=151 Identities=23% Similarity=0.380 Sum_probs=102.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeE
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI 93 (329)
..-+||+++|++|||||||++++.++.+...+.||++..+.. +++..+.+.+|||||++.+..+++.+++++|+++
T Consensus 4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i 83 (173)
T d2fu5c1 4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 83 (173)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred cEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEE
Confidence 345899999999999999999999999988888898876543 4566789999999999999999999999999999
Q ss_pred eecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcC
Q psy2970 94 WTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKR 173 (329)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~ 173 (329)
+|||++++.+|+.+..|+..+... ...++|+++|+||.
T Consensus 84 -----------------------------------------~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilv~~k~ 121 (173)
T d2fu5c1 84 -----------------------------------------LVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKC 121 (173)
T ss_dssp -----------------------------------------EEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC-
T ss_pred -----------------------------------------EEEECCChhhHHHHHHHHHHhhhh-ccCCceEEEEEecc
Confidence 999999999999999998888654 34679999999999
Q ss_pred CCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 174 DLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 174 Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|+... .++..++++.+++|++|||+++.++++.++.+
T Consensus 122 D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~l 163 (173)
T d2fu5c1 122 DVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTL 163 (173)
T ss_dssp -CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHH
T ss_pred cchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99764 45778899999999999999977777766554
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=4.1e-26 Score=195.59 Aligned_cols=148 Identities=19% Similarity=0.216 Sum_probs=120.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCceeeeEE----EeeCceEEEEEEecCC---CccccchHHHHhhccce
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVGFNMR----KITKGNVTIKVWDIGG---QPRFRSMWERYCRGVNA 91 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig~~~~----~i~~~~~~l~I~DtpG---~e~~~~~~~~~~~~ad~ 91 (329)
-+||+++|++|||||||++++.++.+. ....+|++.+.. .++++.+.+.+||+++ ++++ ++..+++++|+
T Consensus 3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~~ 80 (172)
T d2g3ya1 3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDA 80 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCSE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccce
Confidence 589999999999999999999987764 344566665433 2567788889999764 5544 56678899999
Q ss_pred eEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEE
Q psy2970 92 IVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGN 171 (329)
Q Consensus 92 iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgN 171 (329)
++ +|||++++++|+++..|+.++.......++|++||||
T Consensus 81 ~i-----------------------------------------lvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgn 119 (172)
T d2g3ya1 81 YL-----------------------------------------IVYSITDRASFEKASELRIQLRRARQTEDIPIILVGN 119 (172)
T ss_dssp EE-----------------------------------------EEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEE
T ss_pred ee-----------------------------------------eeecccccchhhhhhhhhhhhhhccccCCceEEEEec
Confidence 99 9999999999999999999988766667899999999
Q ss_pred cCCCCCh-----hhHHHHHHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 172 KRDLPNA-----LDEKELIDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 172 K~Dl~~~-----~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|+|+.+. ++++++++.++++|+||||+++.+.+++++.+
T Consensus 120 K~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~f~~l 163 (172)
T d2g3ya1 120 KSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGI 163 (172)
T ss_dssp CTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHHHHHH
Confidence 9998654 56888999999999999999977777766544
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=2.4e-25 Score=190.25 Aligned_cols=150 Identities=20% Similarity=0.347 Sum_probs=125.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
-+||+|+|++|||||||++++..+++.+.+.+|++..+.. .++..+.+.+||++|+......+..++..+++++
T Consensus 6 ~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i-- 83 (174)
T d1wmsa_ 6 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL-- 83 (174)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE--
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEE--
Confidence 4799999999999999999999999998889988876543 3566789999999999999999999999999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHh---CCcCCCCcEEEEEEc
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIE---KPQLIGIPILVLGNK 172 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~---~~~~~~iPIiLVgNK 172 (329)
+++|.+++.+|+.+..|+.++.+ .....++|++|||||
T Consensus 84 ---------------------------------------~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK 124 (174)
T d1wmsa_ 84 ---------------------------------------LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNK 124 (174)
T ss_dssp ---------------------------------------EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEEC
T ss_pred ---------------------------------------EEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccc
Confidence 99999999999999999877754 233467999999999
Q ss_pred CCCCCh----hhHHHHHHHhC-CcEEEEeccchHHHHHHhhhh
Q psy2970 173 RDLPNA----LDEKELIDRIM-IDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 173 ~Dl~~~----~e~~~l~~~~~-~~~~etSAk~~~~~~~~l~~i 210 (329)
+|+.+. .++++++++.+ ++|+||||+++.+++++++.+
T Consensus 125 ~Dl~~~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l 167 (174)
T d1wmsa_ 125 IDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEA 167 (174)
T ss_dssp TTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHH
T ss_pred cchhhccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHHHHHHH
Confidence 999763 57888998875 899999999977777766543
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.92 E-value=5.2e-25 Score=189.70 Aligned_cols=149 Identities=23% Similarity=0.371 Sum_probs=126.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE----eeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK----ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~----i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+||+|+|++|||||||++++.++++...+.||++.++.. ..+..+.+.+||++|++.+...+..++..+++++
T Consensus 3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i--- 79 (184)
T d1vg8a_ 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV--- 79 (184)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE---
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEE---
Confidence 799999999999999999999999998999999877653 4567789999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC---CcCCCCcEEEEEEcC
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK---PQLIGIPILVLGNKR 173 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~---~~~~~iPIiLVgNK~ 173 (329)
++||.+++.+++.+..|+.++... ....++|++|||||+
T Consensus 80 --------------------------------------~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~ 121 (184)
T d1vg8a_ 80 --------------------------------------LVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 121 (184)
T ss_dssp --------------------------------------EEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECT
T ss_pred --------------------------------------EeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEee
Confidence 999999999999999998877653 234578999999999
Q ss_pred CCCCh----hhHHHHHH-HhCCcEEEEeccchHHHHHHhhhh
Q psy2970 174 DLPNA----LDEKELID-RIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 174 Dl~~~----~e~~~l~~-~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
|+.+. .+.++++. ..+++|+||||+++.+.++++..+
T Consensus 122 Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l 163 (184)
T d1vg8a_ 122 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 163 (184)
T ss_dssp TSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHHHHH
Confidence 98764 44555654 457999999999977677766543
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=5.2e-24 Score=184.22 Aligned_cols=144 Identities=13% Similarity=0.250 Sum_probs=116.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEE---eeCceEEEEEEecCCCccccchHHHHhhccceeEee
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWT 95 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~ 95 (329)
.++||+++|++|||||||++++.++++.. +.+|.+..+.+ ++++.+.+.+|||+|++++ .+++.+|+++
T Consensus 4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~i-- 75 (175)
T d2bmja1 4 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVI-- 75 (175)
T ss_dssp CEEEEEEECCTTTTHHHHHHHHHHSCCCC-CCCSSCEEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEE--
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCC-cCCccceeEEEEeecCceEEEEEEeeccccccc-----ccccccceeE--
Confidence 47999999999999999999999999864 56777766654 5678899999999998864 4889999999
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHh--CCcCCCCcEEEEEEcC
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIE--KPQLIGIPILVLGNKR 173 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~--~~~~~~iPIiLVgNK~ 173 (329)
+|||+++++||+++..|+.++.. .....++|+++||||.
T Consensus 76 ---------------------------------------lVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~ 116 (175)
T d2bmja1 76 ---------------------------------------FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQD 116 (175)
T ss_dssp ---------------------------------------EEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECT
T ss_pred ---------------------------------------EEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeec
Confidence 99999999999999998887753 2334678999999999
Q ss_pred CCCCh-------hhHHHHHHH-hCCcEEEEeccchHHHHHHhhh
Q psy2970 174 DLPNA-------LDEKELIDR-IMIDFWITLTLLIRWCESFLHH 209 (329)
Q Consensus 174 Dl~~~-------~e~~~l~~~-~~~~~~etSAk~~~~~~~~l~~ 209 (329)
|+... .+++.++++ .+++|+||||+++.+.++.+..
T Consensus 117 d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~ 160 (175)
T d2bmja1 117 RISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQE 160 (175)
T ss_dssp TCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHHHHHH
T ss_pred CcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHHHHHH
Confidence 98542 456777655 5789999999996666665543
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.90 E-value=4.4e-23 Score=170.23 Aligned_cols=148 Identities=28% Similarity=0.554 Sum_probs=124.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceee
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYI 100 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~ 100 (329)
+||+++|++|||||||++++.++++.+.+. +........+...+.+.+||++|.+.+...+..+++.+++++
T Consensus 1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i------- 72 (160)
T d1r8sa_ 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI------- 72 (160)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCC-CSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEE-------
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcccc-ceeeEEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEE-------
Confidence 699999999999999999999988865433 333444556788899999999999999999999999999999
Q ss_pred ehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhh
Q psy2970 101 VSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALD 180 (329)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e 180 (329)
+++|++++.++.....++.++........+|+++++||.|+.+...
T Consensus 73 ----------------------------------~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~ 118 (160)
T d1r8sa_ 73 ----------------------------------FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 118 (160)
T ss_dssp ----------------------------------EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC
T ss_pred ----------------------------------EEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeeccccccccc
Confidence 9999999999999999999998877778899999999999987643
Q ss_pred HHHH--------HHHhCCcEEEEeccchHHHHHHhhhh
Q psy2970 181 EKEL--------IDRIMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 181 ~~~l--------~~~~~~~~~etSAk~~~~~~~~l~~i 210 (329)
..++ ++..++++++|||+++.+++++++.+
T Consensus 119 ~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l 156 (160)
T d1r8sa_ 119 AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 156 (160)
T ss_dssp HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHH
Confidence 3333 33345689999999988888887654
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.89 E-value=4.4e-23 Score=174.31 Aligned_cols=161 Identities=27% Similarity=0.461 Sum_probs=129.7
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHH
Q psy2970 4 LLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWE 83 (329)
Q Consensus 4 ~~~~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~ 83 (329)
||++++ ++|.++++||+++|.+|||||||++++.++++.+ ..++.+.........+.++.+||++|++..+..+.
T Consensus 3 ~~~~~~----~~~~~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 77 (177)
T d1zj6a1 3 LFTRIW----RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWN 77 (177)
T ss_dssp HHHHHH----HHHTTSCEEEEEEESTTSSHHHHHHHHHTTSCEE-EECCSCSSCEEEEETTEEEEEEECCC----CGGGH
T ss_pred hHHHHH----HHhCCCeEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccceeEEEEeecceEEEEeccccccccccchh
Confidence 555555 5556889999999999999999999999998863 35566666666777889999999999999999999
Q ss_pred HHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCC
Q psy2970 84 RYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIG 163 (329)
Q Consensus 84 ~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~ 163 (329)
.+...+++++ +++|.++..+++....++..........+
T Consensus 78 ~~~~~~~~~i-----------------------------------------~v~d~~d~~~~~~~~~~~~~~~~~~~~~~ 116 (177)
T d1zj6a1 78 TYYTNTEFVI-----------------------------------------VVVDSTDRERISVTREELYKMLAHEDLRK 116 (177)
T ss_dssp HHHTTCCEEE-----------------------------------------EEEETTCTTTHHHHHHHHHHHHTSGGGTT
T ss_pred hhhccceeee-----------------------------------------eecccccccchhhhhhhhhhhhhcccccc
Confidence 9999999999 99999999999999888888777766789
Q ss_pred CcEEEEEEcCCCCChhhHHHHHHHh--------CCcEEEEeccchHHHHHHhhhh
Q psy2970 164 IPILVLGNKRDLPNALDEKELIDRI--------MIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 164 iPIiLVgNK~Dl~~~~e~~~l~~~~--------~~~~~etSAk~~~~~~~~l~~i 210 (329)
.|+++|+||+|++......+.++.+ +++++++||+++.+.++.++.+
T Consensus 117 ~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e~~~~L 171 (177)
T d1zj6a1 117 AGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 171 (177)
T ss_dssp CEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred eEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999998765544444443 3569999999988888776544
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.87 E-value=1.1e-22 Score=174.11 Aligned_cols=150 Identities=23% Similarity=0.347 Sum_probs=120.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecce
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~ 98 (329)
|++||+++|++|||||||++||..+.+. +.||+|.++..++.+.+.+++||++|++.++..|..+++.+++++
T Consensus 1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i----- 73 (200)
T d2bcjq2 1 RELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIM----- 73 (200)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEEEEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEE-----
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEEEEEeccceeeeeccccccccccccccccccccceee-----
Confidence 5899999999999999999999988874 679999999999999999999999999999999999999999999
Q ss_pred eeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcc----------cHHHHHHHHHHHHhCCcCCCCcEEE
Q psy2970 99 YIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTD----------KLEASRNELHALIEKPQLIGIPILV 168 (329)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~----------S~~~~~~~l~~i~~~~~~~~iPIiL 168 (329)
++||.++.. .+.+...++..++......+.|+++
T Consensus 74 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~ 117 (200)
T d2bcjq2 74 ------------------------------------FLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVIL 117 (200)
T ss_dssp ------------------------------------EEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEE
T ss_pred ------------------------------------EeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEE
Confidence 888887653 3455566666677766678999999
Q ss_pred EEEcCCCCCh---------------------hhHHHH-HHHh---------CCcEEEEeccchHHHHHHhhhhc
Q psy2970 169 LGNKRDLPNA---------------------LDEKEL-IDRI---------MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 169 VgNK~Dl~~~---------------------~e~~~l-~~~~---------~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
++||+|+... ....++ ..++ .+.+++|||+++.+.+..++.+.
T Consensus 118 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~ 191 (200)
T d2bcjq2 118 FLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVK 191 (200)
T ss_dssp EEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHH
Confidence 9999998432 011111 1111 23478999999888888887653
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.87 E-value=2.6e-22 Score=171.01 Aligned_cols=147 Identities=22% Similarity=0.288 Sum_probs=115.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecce
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~ 98 (329)
|++||+++|+.|||||||++||..+.+ ||+|.....++.+...+++|||+|++.++.++..+++.+++++
T Consensus 1 ~e~KivllG~~~vGKTsl~~r~~~~~~-----~t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i----- 70 (195)
T d1svsa1 1 REVKLLLLGAGESGKSTIVKQMKIIHE-----AGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAII----- 70 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHS-----CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEE-----
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC-----CCccEEEEEEEeeeeeeeeeccccccccccchhhcccCCceee-----
Confidence 589999999999999999999987665 4556666677888999999999999999999999999999999
Q ss_pred eeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccH----------HHHHHHHHHHHhCCcCCCCcEEE
Q psy2970 99 YIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKL----------EASRNELHALIEKPQLIGIPILV 168 (329)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~----------~~~~~~l~~i~~~~~~~~iPIiL 168 (329)
+|+|+++.+++ .+...++..++......+.|+++
T Consensus 71 ------------------------------------~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~l 114 (195)
T d1svsa1 71 ------------------------------------FCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIIL 114 (195)
T ss_dssp ------------------------------------EEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEE
T ss_pred ------------------------------------eEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEE
Confidence 99999888765 34556667777776778899999
Q ss_pred EEEcCCCCCh--------------------hh-HHHHHHHh----------CCcEEEEeccchHHHHHHhhhhc
Q psy2970 169 LGNKRDLPNA--------------------LD-EKELIDRI----------MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 169 VgNK~Dl~~~--------------------~e-~~~l~~~~----------~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
++||+|+... .+ ...+..++ .+.+++|||++.++.++.++.+.
T Consensus 115 v~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~ 188 (195)
T d1svsa1 115 FLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVT 188 (195)
T ss_dssp EEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred EeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHH
Confidence 9999986221 11 11122222 24578999999888888776554
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=3.1e-21 Score=158.10 Aligned_cols=148 Identities=30% Similarity=0.578 Sum_probs=128.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeee
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIV 101 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~ 101 (329)
||+++|++|||||||+|++.++++. .+.||.+........++....+||++|...+...+..+...+++++
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 72 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIV-------- 72 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEE--------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC-eeeceeeEeEEEeccCCeeEEEEeeccchhhhhhHhhhhhheeeee--------
Confidence 8999999999999999999999886 5689999988888888899999999999999999999999999999
Q ss_pred hhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhH
Q psy2970 102 SKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDE 181 (329)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~ 181 (329)
+++|.+++.++.....++....+.....+.|+++++||.|++.....
T Consensus 73 ---------------------------------~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~ 119 (166)
T d2qtvb1 73 ---------------------------------FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSE 119 (166)
T ss_dssp ---------------------------------EEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCH
T ss_pred ---------------------------------eeccccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCH
Confidence 99999999999999999998888777889999999999999876444
Q ss_pred HHHHHHhC---------------CcEEEEeccchHHHHHHhhhhc
Q psy2970 182 KELIDRIM---------------IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 182 ~~l~~~~~---------------~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.++.+.++ +++++|||+++.+.++.++-+.
T Consensus 120 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~~l~ 164 (166)
T d2qtvb1 120 AELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 164 (166)
T ss_dssp HHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHHHHHHT
T ss_pred HHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHHHHHHHh
Confidence 44444432 3689999999888888776543
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.86 E-value=4.6e-22 Score=171.13 Aligned_cols=149 Identities=22% Similarity=0.356 Sum_probs=114.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecce
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~ 98 (329)
+.+||+++|++|||||||++|+. +...+.||+|.....++.+..++++||++|++.++..|..+++.+++++
T Consensus 1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~----- 72 (200)
T d1zcba2 1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSIL----- 72 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEE-----
T ss_pred CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEEEEEeeeeeeeeeecccceeeecccccccccccceeE-----
Confidence 46899999999999999999993 5567889999999999999999999999999999999999999999999
Q ss_pred eeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc----------ccHHHHHHHHHHHHhCCcCCCCcEEE
Q psy2970 99 YIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT----------DKLEASRNELHALIEKPQLIGIPILV 168 (329)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~----------~S~~~~~~~l~~i~~~~~~~~iPIiL 168 (329)
+++|.++. .++++...++..+++.....++|++|
T Consensus 73 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piil 116 (200)
T d1zcba2 73 ------------------------------------FLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIIL 116 (200)
T ss_dssp ------------------------------------EEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEE
T ss_pred ------------------------------------EEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEE
Confidence 78887764 45678888899998887788999999
Q ss_pred EEEcCCCCCh---------------------hhHHH-HHHHh----------CCcEEEEeccchHHHHHHhhhhc
Q psy2970 169 LGNKRDLPNA---------------------LDEKE-LIDRI----------MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 169 VgNK~Dl~~~---------------------~e~~~-l~~~~----------~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+|||+|+.++ ..+.+ +.+.+ .+..++|||++.++.+..++.+.
T Consensus 117 v~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~ 191 (200)
T d1zcba2 117 FLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVK 191 (200)
T ss_dssp EEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHH
T ss_pred EeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHH
Confidence 9999997432 11222 22222 24467899999877777776543
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.86 E-value=4.4e-21 Score=158.75 Aligned_cols=151 Identities=29% Similarity=0.560 Sum_probs=128.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeecc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~ 97 (329)
.+++||+++|++|||||||++++.++++.+ ..+|.+........+.+.+.+||.+|.+............+++++
T Consensus 3 ~ke~kI~ivG~~~vGKSSLi~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 77 (169)
T d1upta_ 3 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVI---- 77 (169)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEE----
T ss_pred CcceEEEEECCCCCCHHHHHHHHhCCCCcc-eecccceeeeeeccCceEEEEeeccccccccccchhhhhhhhhhh----
Confidence 578999999999999999999999999864 467888877777888899999999999999999888999999999
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN 177 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~ 177 (329)
+++|+.+..++.....++............|+++++||.|+.+
T Consensus 78 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~ 120 (169)
T d1upta_ 78 -------------------------------------YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 120 (169)
T ss_dssp -------------------------------------EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred -------------------------------------hhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccc
Confidence 9999999999999988888877776678899999999999987
Q ss_pred hhhHHHHHHH--------hCCcEEEEeccchHHHHHHhhhh
Q psy2970 178 ALDEKELIDR--------IMIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 178 ~~e~~~l~~~--------~~~~~~etSAk~~~~~~~~l~~i 210 (329)
.....++.++ .++++++|||+++.+++++++.+
T Consensus 121 ~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l 161 (169)
T d1upta_ 121 AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWL 161 (169)
T ss_dssp CCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHH
Confidence 6443333333 34689999999988888877655
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.86 E-value=4.3e-21 Score=161.13 Aligned_cols=161 Identities=28% Similarity=0.558 Sum_probs=126.3
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHh
Q psy2970 7 RILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYC 86 (329)
Q Consensus 7 ~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~ 86 (329)
++++++. +.+|+.||+++|++|||||||++++.++.+.. ..||.+.....+..++..+..||+.++..+...+..+.
T Consensus 2 ~~~~~~~--~~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (186)
T d1f6ba_ 2 SVLQFLG--LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYL 78 (186)
T ss_dssp HHHHHHT--CTTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGG
T ss_pred chHHhcc--ccCCCCEEEEECCCCCCHHHHHHHHhCCCCcc-eecccccceeEEEecccccccccccchhhhhhHHhhhh
Confidence 3556663 45899999999999999999999999988763 45777777777777788899999999999999999999
Q ss_pred hccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcE
Q psy2970 87 RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPI 166 (329)
Q Consensus 87 ~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPI 166 (329)
+..++++ +++|.++...+.+...++..........+.|+
T Consensus 79 ~~~~~~~-----------------------------------------~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (186)
T d1f6ba_ 79 PAINGIV-----------------------------------------FLVDCADHERLLESKEELDSLMTDETIANVPI 117 (186)
T ss_dssp GGCSEEE-----------------------------------------EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCE
T ss_pred cccceee-----------------------------------------eeeeccCccchHHHHHHHHHhhcccccCCCce
Confidence 9999999 99999999999999888888777666788999
Q ss_pred EEEEEcCCCCChhhHHHHHHHhC--------------------CcEEEEeccchHHHHHHhhhhc
Q psy2970 167 LVLGNKRDLPNALDEKELIDRIM--------------------IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 167 iLVgNK~Dl~~~~e~~~l~~~~~--------------------~~~~etSAk~~~~~~~~l~~i~ 211 (329)
++++||.|++......++.+.++ +++++|||+++.++++.++-+.
T Consensus 118 li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~ 182 (186)
T d1f6ba_ 118 LILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 182 (186)
T ss_dssp EEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHH
T ss_pred EEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999987655444444442 3599999999888888776544
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.80 E-value=6e-19 Score=150.51 Aligned_cols=148 Identities=19% Similarity=0.145 Sum_probs=104.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCC-CceeeeEEEeeCceEEEEEEecCCCccccchH--------HHHhhc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFS--QDMI-PTVGFNMRKITKGNVTIKVWDIGGQPRFRSMW--------ERYCRG 88 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~--~~~~-pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~--------~~~~~~ 88 (329)
.-+|+|+|.+|||||||+|+|++.+.. .... .|...........+..+.+|||||........ ..++++
T Consensus 5 ~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 84 (178)
T d1wf3a1 5 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALAD 84 (178)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeecccccccccccccchhccccccccccc
Confidence 347999999999999999999987642 2222 23333344456677899999999986554433 234567
Q ss_pred cceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEE
Q psy2970 89 VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILV 168 (329)
Q Consensus 89 ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiL 168 (329)
+|+++ +|+|++++... ...++.+.++.. ..+.|+++
T Consensus 85 ad~il-----------------------------------------~v~D~~~~~~~--~~~~i~~~l~~~-~~~~piil 120 (178)
T d1wf3a1 85 VNAVV-----------------------------------------WVVDLRHPPTP--EDELVARALKPL-VGKVPILL 120 (178)
T ss_dssp CSEEE-----------------------------------------EEEETTSCCCH--HHHHHHHHHGGG-TTTSCEEE
T ss_pred cccee-----------------------------------------eeechhhhhcc--cccchhhheecc-ccchhhhh
Confidence 88888 99999876443 234444444332 35789999
Q ss_pred EEEcCCCCCh-hh-HHHHHHHhC-CcEEEEeccchHHHHHHhhhhc
Q psy2970 169 LGNKRDLPNA-LD-EKELIDRIM-IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 169 VgNK~Dl~~~-~e-~~~l~~~~~-~~~~etSAk~~~~~~~~l~~i~ 211 (329)
|+||+|+.+. .+ .+.+.+.++ ..++++||+++.+++++++.+.
T Consensus 121 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~~~gi~~L~~~i~ 166 (178)
T d1wf3a1 121 VGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLL 166 (178)
T ss_dssp EEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHH
T ss_pred hhcccccccCHHHHHHHHHhhcccCceEEEecCCCCCHHHHHHHHH
Confidence 9999999765 22 344555555 5689999999998999887765
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.78 E-value=1.2e-19 Score=161.71 Aligned_cols=116 Identities=26% Similarity=0.424 Sum_probs=103.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhccceeEeec
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTG 96 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~ 96 (329)
+++.+||+++|++|||||||++++..+++ .||+|.....++.+++.+++||++|++.++..|..+++++++++
T Consensus 3 ~k~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii--- 75 (221)
T d1azta2 3 YRATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAII--- 75 (221)
T ss_dssp HHHSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCEEEEEEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEE---
T ss_pred chhcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeEEEEEEECcEEEEEEecCccceeccchhhhcccccceE---
Confidence 35779999999999999999999976544 58999998889889999999999999999999999999999999
Q ss_pred ceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc----------ccHHHHHHHHHHHHhCCcCCCCcE
Q psy2970 97 GLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT----------DKLEASRNELHALIEKPQLIGIPI 166 (329)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~----------~S~~~~~~~l~~i~~~~~~~~iPI 166 (329)
+|+|.++. .++.+...++..+++.....++|+
T Consensus 76 --------------------------------------~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~i 117 (221)
T d1azta2 76 --------------------------------------FVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV 117 (221)
T ss_dssp --------------------------------------EEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEE
T ss_pred --------------------------------------EEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcE
Confidence 88988753 457778888999999888899999
Q ss_pred EEEEEcCCCCC
Q psy2970 167 LVLGNKRDLPN 177 (329)
Q Consensus 167 iLVgNK~Dl~~ 177 (329)
+|+|||+|+.+
T Consensus 118 il~~NK~Dl~~ 128 (221)
T d1azta2 118 ILFLNKQDLLA 128 (221)
T ss_dssp EEEEECHHHHH
T ss_pred EEEechhhhhh
Confidence 99999999854
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=4.7e-19 Score=147.59 Aligned_cols=146 Identities=15% Similarity=0.166 Sum_probs=103.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCce--eeeEEEeeCceEEEEEEecCCCccccch--------HHHHhhcc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTV--GFNMRKITKGNVTIKVWDIGGQPRFRSM--------WERYCRGV 89 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTi--g~~~~~i~~~~~~l~I~DtpG~e~~~~~--------~~~~~~~a 89 (329)
+||+++|++|||||||+|+|++.+.. ....|+. ......+...+..+.++|+||..+.... ...+++.+
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQA 81 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHhc
Confidence 79999999999999999999987653 1222222 2223345677788999999997654332 23456778
Q ss_pred ceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEE
Q psy2970 90 NAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVL 169 (329)
Q Consensus 90 d~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLV 169 (329)
|.++ +++|..++.+++....+...+... ..+.|+++|
T Consensus 82 d~~i-----------------------------------------~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~iilv 118 (161)
T d2gj8a1 82 DRVL-----------------------------------------FMVDGTTTDAVDPAEIWPEFIARL--PAKLPITVV 118 (161)
T ss_dssp SEEE-----------------------------------------EEEETTTCCCCSHHHHCHHHHHHS--CTTCCEEEE
T ss_pred cccc-----------------------------------------eeeccccccchhhhhhhhhhhhhc--ccccceeec
Confidence 8888 999999887766666554444333 357899999
Q ss_pred EEcCCCCChhhHHHHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 170 GNKRDLPNALDEKELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 170 gNK~Dl~~~~e~~~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+||+|+.++.. .+.+..+.+++++||+++.+.+++++.+.
T Consensus 119 ~NK~Dl~~~~~--~~~~~~~~~~~~iSAk~~~gi~~L~~~l~ 158 (161)
T d2gj8a1 119 RNKADITGETL--GMSEVNGHALIRLSARTGEGVDVLRNHLK 158 (161)
T ss_dssp EECHHHHCCCC--EEEEETTEEEEECCTTTCTTHHHHHHHHH
T ss_pred cchhhhhhhHH--HHHHhCCCcEEEEECCCCCCHHHHHHHHH
Confidence 99999865421 11223357899999999888888887653
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.75 E-value=5.3e-18 Score=147.66 Aligned_cols=122 Identities=20% Similarity=0.313 Sum_probs=93.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEe---eCceEEEEEEecCCCcccc-chHHHHhhccceeEeecc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKI---TKGNVTIKVWDIGGQPRFR-SMWERYCRGVNAIVWTGG 97 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i---~~~~~~l~I~DtpG~e~~~-~~~~~~~~~ad~iI~~~~ 97 (329)
+|+++|++|||||||+++|.++++... .||++.....+ +.....+.+||++|++.++ ..+..+++.+++++
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i---- 76 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV---- 76 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCB-CCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE----
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc-cCCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccc----
Confidence 699999999999999999999988644 46777666543 3567889999999999885 46788889999999
Q ss_pred eeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCccc-HHHHHHHHHHHHhC--CcCCCCcEEEEEEcCC
Q psy2970 98 LYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDK-LEASRNELHALIEK--PQLIGIPILVLGNKRD 174 (329)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S-~~~~~~~l~~i~~~--~~~~~iPIiLVgNK~D 174 (329)
+|+|+++..+ +.....++.+++.. ....++|++||+||+|
T Consensus 77 -------------------------------------~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~D 119 (207)
T d2fh5b1 77 -------------------------------------FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQD 119 (207)
T ss_dssp -------------------------------------EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTT
T ss_pred -------------------------------------eEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcc
Confidence 9999999765 45555566555432 2235689999999999
Q ss_pred CCChhhHHHHH
Q psy2970 175 LPNALDEKELI 185 (329)
Q Consensus 175 l~~~~e~~~l~ 185 (329)
++++...+++.
T Consensus 120 l~~a~~~~~i~ 130 (207)
T d2fh5b1 120 IAMAKSAKLIQ 130 (207)
T ss_dssp STTCCCHHHHH
T ss_pred cCCCCCHHHHH
Confidence 98765444433
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.74 E-value=6.5e-18 Score=140.40 Aligned_cols=142 Identities=17% Similarity=0.189 Sum_probs=101.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC--CCC-CCceeeeEEEeeCceEEEEEEecCCCcccc---------chHHHHhhc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQFS--QDM-IPTVGFNMRKITKGNVTIKVWDIGGQPRFR---------SMWERYCRG 88 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~~--~~~-~pTig~~~~~i~~~~~~l~I~DtpG~e~~~---------~~~~~~~~~ 88 (329)
+||+++|.+|||||||+|+|++.+.. ... ..|.......+...+..+.+|||||..... ......+..
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 80 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK 80 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHh
Confidence 69999999999999999999986542 111 222223333456678889999999943211 112234567
Q ss_pred cceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEE
Q psy2970 89 VNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILV 168 (329)
Q Consensus 89 ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiL 168 (329)
+|+++ +|+|.+++...+.... ...+ .+.|+++
T Consensus 81 ad~ii-----------------------------------------~v~d~~~~~~~~~~~~-~~~~------~~~~~i~ 112 (160)
T d1xzpa2 81 ADIVL-----------------------------------------FVLDASSPLDEEDRKI-LERI------KNKRYLV 112 (160)
T ss_dssp CSEEE-----------------------------------------EEEETTSCCCHHHHHH-HHHH------TTSSEEE
T ss_pred CCEEE-----------------------------------------EEEeCCCCcchhhhhh-hhhc------cccccee
Confidence 78777 9999998876543332 2222 4578999
Q ss_pred EEEcCCCCChhhHHHHHHHhC--CcEEEEeccchHHHHHHhhhh
Q psy2970 169 LGNKRDLPNALDEKELIDRIM--IDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 169 VgNK~Dl~~~~e~~~l~~~~~--~~~~etSAk~~~~~~~~l~~i 210 (329)
++||+|+.+..+.+++.++++ .+++++||+++.+.+++++.+
T Consensus 113 ~~~k~d~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~I 156 (160)
T d1xzpa2 113 VINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESI 156 (160)
T ss_dssp EEEECSSCCCCCHHHHHHHHTCSTTEEEEEGGGTCCHHHHHHHH
T ss_pred eeeeccccchhhhHHHHHHhCCCCcEEEEECCCCCCHHHHHHHH
Confidence 999999998877777777776 579999999988888887665
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.72 E-value=1.7e-17 Score=141.41 Aligned_cols=147 Identities=23% Similarity=0.218 Sum_probs=97.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCceeeeEEE-eeCceEEEEEEecCCCcccc-------chHHHHhhccce
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTVGFNMRK-ITKGNVTIKVWDIGGQPRFR-------SMWERYCRGVNA 91 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~--~~~~pTig~~~~~-i~~~~~~l~I~DtpG~e~~~-------~~~~~~~~~ad~ 91 (329)
+|+++|.+|||||||+|+|++.+.. .....|+...+.. ....+.++.+|||||..... ......+..++.
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~ 82 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV 82 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence 4899999999999999999986653 2223344444433 34456678999999954321 122334566777
Q ss_pred eEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc--ccHHHHHHHHHHHHhCCcCCCCcEEEE
Q psy2970 92 IVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT--DKLEASRNELHALIEKPQLIGIPILVL 169 (329)
Q Consensus 92 iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~--~S~~~~~~~l~~i~~~~~~~~iPIiLV 169 (329)
++ +++|.... ...+....++.... ....+.|+++|
T Consensus 83 ~~-----------------------------------------~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~p~iiv 119 (180)
T d1udxa2 83 LL-----------------------------------------YVLDAADEPLKTLETLRKEVGAYD--PALLRRPSLVA 119 (180)
T ss_dssp EE-----------------------------------------EEEETTSCHHHHHHHHHHHHHHHC--HHHHHSCEEEE
T ss_pred hh-----------------------------------------hhcccccccccchhhhhhhhhccc--cccchhhhhhh
Confidence 77 89997653 22333333333221 12245799999
Q ss_pred EEcCCCCChhhHHHHH---HHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 170 GNKRDLPNALDEKELI---DRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 170 gNK~Dl~~~~e~~~l~---~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+||+|+.++.+.+++. .+.+.+++++||+++.+.+++++.+.
T Consensus 120 ~NK~D~~~~~~~~~~~~~~~~~~~~~~~iSA~tg~gid~L~~~i~ 164 (180)
T d1udxa2 120 LNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEALH 164 (180)
T ss_dssp EECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 9999998875544443 44578999999999888888887664
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.69 E-value=4.1e-17 Score=138.17 Aligned_cols=144 Identities=17% Similarity=0.180 Sum_probs=89.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCcccc-----------c----hHHHHh
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR-----------S----MWERYC 86 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~-----------~----~~~~~~ 86 (329)
.|+++|.+|||||||+|++++.+......|.+......+...+ +.++||||..... . ......
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~~~~~~~--~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKN--HKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNA 79 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEETT--EEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeeccccccccc--ceecccCCceeccccccccccccchhhhhhhhhcc
Confidence 5899999999999999999998775444443333333344444 4689999952211 1 112234
Q ss_pred hccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHH---------HHHHHHHh
Q psy2970 87 RGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASR---------NELHALIE 157 (329)
Q Consensus 87 ~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~---------~~l~~i~~ 157 (329)
+.+|+++ +|+|.+.+....... ..+.+.+.
T Consensus 80 ~~~d~~~-----------------------------------------~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 118 (184)
T d2cxxa1 80 KNIDVAV-----------------------------------------LVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLR 118 (184)
T ss_dssp GGCCEEE-----------------------------------------EEEETTHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred cccchhe-----------------------------------------eeeeccccchhhhhhhhccccHHHHHHHHHHH
Confidence 4566666 999987543211110 11111222
Q ss_pred CCcCCCCcEEEEEEcCCCCCh-h-hHHHHHHHhCC-------cEEEEeccchHHHHHHhhhhc
Q psy2970 158 KPQLIGIPILVLGNKRDLPNA-L-DEKELIDRIMI-------DFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 158 ~~~~~~iPIiLVgNK~Dl~~~-~-e~~~l~~~~~~-------~~~etSAk~~~~~~~~l~~i~ 211 (329)
..++|+++|+||+|+.+. . ....+.+.++. .++++||+++.+.+++.+.+.
T Consensus 119 ---~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~ 178 (184)
T d2cxxa1 119 ---ELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIF 178 (184)
T ss_dssp ---HTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHH
T ss_pred ---HcCCCEEEEEeeeehhhhHHHHHHHHHHHhcccccccCCeEEEEECCCCCCHHHHHHHHH
Confidence 247899999999997654 2 23344445442 488999999888888876653
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.68 E-value=9.4e-17 Score=137.82 Aligned_cols=147 Identities=17% Similarity=0.172 Sum_probs=101.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCCCCCC--C-------ceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhcc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQFSQDMI--P-------TVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRGV 89 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~~~~~~--p-------Tig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~a 89 (329)
|.++|+++|.+|+|||||+|+|++........ + |.......+...+..+.++|+||+.++.......+..+
T Consensus 4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~~ 83 (179)
T d1wb1a4 4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADII 83 (179)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSC
T ss_pred CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhhc
Confidence 67899999999999999999998643221111 1 11111122455677889999999998888888888889
Q ss_pred ceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEE
Q psy2970 90 NAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVL 169 (329)
Q Consensus 90 d~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLV 169 (329)
|+++ +|+|.++....+ ....+..+ . ..++|+++|
T Consensus 84 d~~i-----------------------------------------lv~d~~~g~~~~-~~~~~~~~-~---~~~~p~iiv 117 (179)
T d1wb1a4 84 DLAL-----------------------------------------IVVDAKEGPKTQ-TGEHMLIL-D---HFNIPIIVV 117 (179)
T ss_dssp CEEE-----------------------------------------EEEETTTCSCHH-HHHHHHHH-H---HTTCCBCEE
T ss_pred cccc-----------------------------------------cccccccccchh-hhhhhhhh-h---hcCCcceec
Confidence 9999 999998754322 22222222 2 257899999
Q ss_pred EEcCCCCChhhH---HHHHHHh--------CCcEEEEeccchHHHHHHhhhhc
Q psy2970 170 GNKRDLPNALDE---KELIDRI--------MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 170 gNK~Dl~~~~e~---~~l~~~~--------~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+||+|+.+.++. ++..+++ ..+++++||+++.+.+++++.+.
T Consensus 118 ~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~eL~~~I~ 170 (179)
T d1wb1a4 118 ITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLII 170 (179)
T ss_dssp EECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccCCcCHHHHHHHHH
Confidence 999999886432 1222221 35899999999888888887664
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.67 E-value=1.3e-16 Score=134.74 Aligned_cols=144 Identities=15% Similarity=0.070 Sum_probs=91.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC---CCCCCceeeeEEEeeCceEEEEEEecCCCcccc---------chHHHHhhcc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFS---QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR---------SMWERYCRGV 89 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~---~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~---------~~~~~~~~~a 89 (329)
.|+++|.+|||||||+|+|++.+.. .....|.......++.....+.+||++|..... .....++..+
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~a 81 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA 81 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeeccccccccccccccccccC
Confidence 6899999999999999999986653 222233334445577888899999999953321 1223345566
Q ss_pred ceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEE
Q psy2970 90 NAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVL 169 (329)
Q Consensus 90 d~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLV 169 (329)
|.++ ++.|.++.... ....++..+ +. .++|+++|
T Consensus 82 d~i~-----------------------------------------~~~~~~~~~~~-~~~~~~~~l-~~---~~~pviiv 115 (171)
T d1mkya1 82 DLVL-----------------------------------------FVVDGKRGITK-EDESLADFL-RK---STVDTILV 115 (171)
T ss_dssp SEEE-----------------------------------------EEEETTTCCCH-HHHHHHHHH-HH---HTCCEEEE
T ss_pred cEEE-----------------------------------------Eeecccccccc-ccccccccc-cc---cccccccc
Confidence 6666 88887764432 222333333 22 46899999
Q ss_pred EEcCCCCChhhHH---HHHHHhCCcEEEEeccchHHHHHHhhhhc
Q psy2970 170 GNKRDLPNALDEK---ELIDRIMIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 170 gNK~Dl~~~~e~~---~l~~~~~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+||+|+.++.+.+ ++.+....+++++||+++.+++++++.+.
T Consensus 116 ~NK~Dl~~~~~~~~~~~~~~~~~~~~i~iSAk~g~gid~L~~~i~ 160 (171)
T d1mkya1 116 ANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETII 160 (171)
T ss_dssp EESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSHHHHHHHHH
T ss_pred chhhhhhhhhhhHHHHHHHhcCCCCeEEEecCCCCCHHHHHHHHH
Confidence 9999998764433 22222234679999999888888876654
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.66 E-value=2e-16 Score=136.27 Aligned_cols=116 Identities=23% Similarity=0.364 Sum_probs=86.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEeeCceEEEEEEecCCCccccchHHHHhhc----cceeEee
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFSQDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMWERYCRG----VNAIVWT 95 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~~~~~~~----ad~iI~~ 95 (329)
+-.|+|+|++|||||||+|+|+++++.+. .|.......++.++..+.+|||||++.++..+..++.. ++.++
T Consensus 3 ~p~V~lvG~~n~GKTSLln~l~~~~~~~~--tt~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i-- 78 (209)
T d1nrjb_ 3 QPSIIIAGPQNSGKTSLLTLLTTDSVRPT--VVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLI-- 78 (209)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCCCB--CCCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEE--
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCe--EEecceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccccc--
Confidence 45899999999999999999999887532 22233444567777788999999999887776655543 35555
Q ss_pred cceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECC-CcccHHHHHHHHHHHH---hCCcCCCCcEEEEEE
Q psy2970 96 GGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAA-DTDKLEASRNELHALI---EKPQLIGIPILVLGN 171 (329)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt-~~~S~~~~~~~l~~i~---~~~~~~~iPIiLVgN 171 (329)
+++|.. +..+++....++.++. +.....++|+++|+|
T Consensus 79 ---------------------------------------~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~N 119 (209)
T d1nrjb_ 79 ---------------------------------------FMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 119 (209)
T ss_dssp ---------------------------------------EEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEE
T ss_pred ---------------------------------------eEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEE
Confidence 788865 4677777777765443 223357899999999
Q ss_pred cCCCCCh
Q psy2970 172 KRDLPNA 178 (329)
Q Consensus 172 K~Dl~~~ 178 (329)
|+|+.+.
T Consensus 120 K~D~~~~ 126 (209)
T d1nrjb_ 120 KSELFTA 126 (209)
T ss_dssp CTTSTTC
T ss_pred eeccccc
Confidence 9999765
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.65 E-value=5.7e-17 Score=138.38 Aligned_cols=148 Identities=16% Similarity=0.198 Sum_probs=93.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCceeeeEEEee-CceEEEEEEecCCCccc----cchHH---HHhhccce
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTVGFNMRKIT-KGNVTIKVWDIGGQPRF----RSMWE---RYCRGVNA 91 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~--~~~~pTig~~~~~i~-~~~~~l~I~DtpG~e~~----~~~~~---~~~~~ad~ 91 (329)
+|.++|.+|||||||+|+|++.+.. .....|......... .+...+.+|||||..+. ..+.. ..+..++.
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~ 82 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRV 82 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhhh
Confidence 5899999999999999999886653 222334444444433 23456889999996321 12222 23445666
Q ss_pred eEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHH---HHHH-HHHHHhCCcCCCCcEE
Q psy2970 92 IVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEA---SRNE-LHALIEKPQLIGIPIL 167 (329)
Q Consensus 92 iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~---~~~~-l~~i~~~~~~~~iPIi 167 (329)
++ ++++....+.... ...+ ...........++|++
T Consensus 83 i~-----------------------------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~i 121 (185)
T d1lnza2 83 IV-----------------------------------------HVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQI 121 (185)
T ss_dssp EE-----------------------------------------EEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBC
T ss_pred hh-----------------------------------------heeeecccccchhhhhhhhhhhccchhhhhccCCcch
Confidence 66 6666554432221 1111 1122223344678999
Q ss_pred EEEEcCCCCChh-hHHHHHHHh--CCcEEEEeccchHHHHHHhhhh
Q psy2970 168 VLGNKRDLPNAL-DEKELIDRI--MIDFWITLTLLIRWCESFLHHF 210 (329)
Q Consensus 168 LVgNK~Dl~~~~-e~~~l~~~~--~~~~~etSAk~~~~~~~~l~~i 210 (329)
+|+||+|+.+.. ..+.+.+.+ +.+++.+||+++.+.+++++.+
T Consensus 122 vv~NK~Dl~~~~~~~~~~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i 167 (185)
T d1lnza2 122 IVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEV 167 (185)
T ss_dssp BEEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHH
T ss_pred hhccccchHhHHHHHHHHHHHhccCCcEEEEECCCCCCHHHHHHHH
Confidence 999999998874 346666666 4779999999977777776655
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.63 E-value=1.8e-15 Score=128.57 Aligned_cols=148 Identities=15% Similarity=0.127 Sum_probs=92.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCce-eeeEEEeeCceEEEEEEecCCCccccch------------H
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTV-GFNMRKITKGNVTIKVWDIGGQPRFRSM------------W 82 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~--~~~~pTi-g~~~~~i~~~~~~l~I~DtpG~e~~~~~------------~ 82 (329)
++.+||+++|.+|||||||+|+|++.+.. ..+..|. ......+..++..+.++|+||....... .
T Consensus 6 ~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~ 85 (186)
T d1mkya2 6 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV 85 (186)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhHHH
Confidence 45699999999999999999999987642 2222232 2233345566778899999997543222 2
Q ss_pred HHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCC
Q psy2970 83 ERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLI 162 (329)
Q Consensus 83 ~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~ 162 (329)
...++.+|.++ +|+|+..... +....++..+ +. .
T Consensus 86 ~~~~~~~dvii-----------------------------------------~v~d~~~~~~-~~~~~~~~~~-~~---~ 119 (186)
T d1mkya2 86 VDSIEKADVVV-----------------------------------------IVLDATQGIT-RQDQRMAGLM-ER---R 119 (186)
T ss_dssp HHHHHHCSEEE-----------------------------------------EEEETTTCCC-HHHHHHHHHH-HH---T
T ss_pred HHHHhcCCEEE-----------------------------------------Eeecccccch-hhHHHHHHHH-HH---c
Confidence 33345555555 9999976533 2222233223 22 4
Q ss_pred CCcEEEEEEcCCCCChh-----hHHH-HHHHh----CCcEEEEeccchHHHHHHhhhhc
Q psy2970 163 GIPILVLGNKRDLPNAL-----DEKE-LIDRI----MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 163 ~iPIiLVgNK~Dl~~~~-----e~~~-l~~~~----~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
+.|+++|+||+|+.... +..+ +.+.. ..+++++||+++.+.+++++.+.
T Consensus 120 ~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSa~~g~gv~~L~~~i~ 178 (186)
T d1mkya2 120 GRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMN 178 (186)
T ss_dssp TCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHH
T ss_pred CCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 68999999999986542 2222 22222 25799999999888888887664
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.52 E-value=2.1e-14 Score=124.44 Aligned_cols=151 Identities=17% Similarity=0.111 Sum_probs=98.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCCC-----CCCCcee--eeEE---------------------EeeCceEEEE
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFSQ-----DMIPTVG--FNMR---------------------KITKGNVTIK 68 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~~-----~~~pTig--~~~~---------------------~i~~~~~~l~ 68 (329)
++..++|+++|..++|||||+++|++..... ...-|.. .... ..+.....+.
T Consensus 2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (195)
T d1kk1a3 2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 81 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence 3567899999999999999999998643210 0011111 1100 0122346689
Q ss_pred EEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHH
Q psy2970 69 VWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEAS 148 (329)
Q Consensus 69 I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~ 148 (329)
+.||||+++|..........+|+++ +|+|+.+.......
T Consensus 82 ~iDtPGh~~f~~~~~~~~~~~d~~i-----------------------------------------lvvda~~g~~~~~t 120 (195)
T d1kk1a3 82 FIDAPGHEALMTTMLAGASLMDGAI-----------------------------------------LVIAANEPCPRPQT 120 (195)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEE-----------------------------------------EEEETTSCSSCHHH
T ss_pred eeccchhhhhhHHhhcccccccccc-----------------------------------------cccchhhhhhhhhh
Confidence 9999999998877777778899999 99998875322223
Q ss_pred HHHHHHHHhCCcCCCCcEEEEEEcCCCCChhh-------HHHHHHHh---CCcEEEEeccchHHHHHHhhhhc
Q psy2970 149 RNELHALIEKPQLIGIPILVLGNKRDLPNALD-------EKELIDRI---MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 149 ~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e-------~~~l~~~~---~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.+.+..+.. ....+++++.||+|+.+..+ ..++.+.+ .++++++||+++.+.+++++.+.
T Consensus 121 ~e~~~~~~~---~~~~~iiv~inK~D~~d~~~~~~~~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~ 190 (195)
T d1kk1a3 121 REHLMALQI---IGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIE 190 (195)
T ss_dssp HHHHHHHHH---HTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHHH---hcCccceeeeecccchhhHHHHHHHHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 332222211 12245888999999988632 12222222 26799999999888888887664
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.52 E-value=5.1e-14 Score=120.89 Aligned_cols=147 Identities=16% Similarity=0.155 Sum_probs=83.1
Q ss_pred CCce-EEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCceeeeEEEeeCceEEEEEEecCCCccccchH----------H-
Q psy2970 18 KEEM-ELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSMW----------E- 83 (329)
Q Consensus 18 ~k~l-kIlllG~~gvGKSSLin~l~~~~~~--~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~~----------~- 83 (329)
...+ +|+|+|.+|||||||+|+|++.+.. ....++......... ......+.|++|........ .
T Consensus 20 ~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 98 (195)
T d1svia_ 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI-INDELHFVDVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE-ETTTEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccccc-ccccceEEEEEeeccccccccccchhhhHHhh
Confidence 3344 8999999999999999999986532 111222222221111 11233456776643221111 1
Q ss_pred --HHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcC
Q psy2970 84 --RYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQL 161 (329)
Q Consensus 84 --~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~ 161 (329)
.....+++++ +++|.+++.. +....++..+ +.
T Consensus 99 ~~~~~~~~~~vi-----------------------------------------~viD~~~~~~-~~~~~~~~~l-~~--- 132 (195)
T d1svia_ 99 YITTREELKAVV-----------------------------------------QIVDLRHAPS-NDDVQMYEFL-KY--- 132 (195)
T ss_dssp HHHHCTTEEEEE-----------------------------------------EEEETTSCCC-HHHHHHHHHH-HH---
T ss_pred hhccccchhhhh-----------------------------------------hhhhcccccc-cccccccccc-cc---
Confidence 1222334444 9999876532 1222333333 22
Q ss_pred CCCcEEEEEEcCCCCChhh----HHHHHHHhC----CcEEEEeccchHHHHHHhhhhc
Q psy2970 162 IGIPILVLGNKRDLPNALD----EKELIDRIM----IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 162 ~~iPIiLVgNK~Dl~~~~e----~~~l~~~~~----~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.++|+++|+||+|+.++.+ .+.+.+.++ .+++.+||+++.+.+++++.+.
T Consensus 133 ~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~~~~gi~el~~~i~ 190 (195)
T d1svia_ 133 YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIK 190 (195)
T ss_dssp TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHH
T ss_pred ccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCEEEEeCCCCCCHHHHHHHHH
Confidence 4689999999999876533 333444443 4689999999888888877654
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.47 E-value=2.2e-14 Score=127.83 Aligned_cols=144 Identities=17% Similarity=0.142 Sum_probs=93.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCC--Ccee--ee-EE---------------EeeCceEEEEEEecCCCccccch
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFSQDMI--PTVG--FN-MR---------------KITKGNVTIKVWDIGGQPRFRSM 81 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~~~~~--pTig--~~-~~---------------~i~~~~~~l~I~DtpG~e~~~~~ 81 (329)
-|+++|.+++|||||++++++........ .|.. .. .. .++.+...+.++||||+++|...
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~ 86 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTL 86 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTS
T ss_pred EEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceeccccc
Confidence 39999999999999999998643211000 0100 10 00 13455678999999999998776
Q ss_pred HHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcC
Q psy2970 82 WERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQL 161 (329)
Q Consensus 82 ~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~ 161 (329)
....+..+|+++ +|+|+.+.-.- .....+..+. .
T Consensus 87 ~~~~~~~~D~~i-----------------------------------------lVvda~~g~~~-~~~~~~~~~~----~ 120 (227)
T d1g7sa4 87 RKRGGALADLAI-----------------------------------------LIVDINEGFKP-QTQEALNILR----M 120 (227)
T ss_dssp BCSSSBSCSEEE-----------------------------------------EEEETTTCCCH-HHHHHHHHHH----H
T ss_pred chhcccccceEE-----------------------------------------EEEecccCccc-chhHHHHHhh----c
Confidence 666778888888 99998763221 2222333332 2
Q ss_pred CCCcEEEEEEcCCCCChhh-------------------------HH----HHHHHh--------------CCcEEEEecc
Q psy2970 162 IGIPILVLGNKRDLPNALD-------------------------EK----ELIDRI--------------MIDFWITLTL 198 (329)
Q Consensus 162 ~~iPIiLVgNK~Dl~~~~e-------------------------~~----~l~~~~--------------~~~~~etSAk 198 (329)
.++|+++|+||+|+.+... .. .+.++. ..+++.+||+
T Consensus 121 ~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~ 200 (227)
T d1g7sa4 121 YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAI 200 (227)
T ss_dssp TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTT
T ss_pred CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCC
Confidence 5789999999999865310 00 111110 1468999999
Q ss_pred chHHHHHHhhhhc
Q psy2970 199 LIRWCESFLHHFG 211 (329)
Q Consensus 199 ~~~~~~~~l~~i~ 211 (329)
++.+.+++++.+.
T Consensus 201 ~G~gid~Ll~~l~ 213 (227)
T d1g7sa4 201 TGEGIPELLTMLM 213 (227)
T ss_dssp TCTTHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 9888888887664
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.44 E-value=3e-13 Score=118.22 Aligned_cols=150 Identities=17% Similarity=0.113 Sum_probs=94.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCC---C--CC-----CCceeeeEEE-----------------------eeCce
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFS---Q--DM-----IPTVGFNMRK-----------------------ITKGN 64 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~---~--~~-----~pTig~~~~~-----------------------i~~~~ 64 (329)
+..++|+++|..++|||||+++|++..-. . .. .......+.. .....
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL 85 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence 45599999999999999999999863211 0 00 0000000000 01112
Q ss_pred EEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCccc
Q psy2970 65 VTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDK 144 (329)
Q Consensus 65 ~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S 144 (329)
..+.+.||||+.+|..........+|.++ +|+|+.+.-.
T Consensus 86 r~~~iiD~PGH~df~~~~~~~~~~ad~ai-----------------------------------------lvVda~~gi~ 124 (205)
T d2qn6a3 86 RRISFIDAPGHEVLMATMLSGAALMDGAI-----------------------------------------LVVAANEPFP 124 (205)
T ss_dssp EEEEEEECSCHHHHHHHHHHTSSCCSEEE-----------------------------------------EEEETTSCSS
T ss_pred EEEEEeccchHHHHHhhhhcceecccccc-----------------------------------------cccccccccc
Confidence 46899999999998776666777888888 9999876421
Q ss_pred HHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhHH-------HHHHHh---CCcEEEEeccchHHHHHHhhhhc
Q psy2970 145 LEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEK-------ELIDRI---MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 145 ~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~-------~l~~~~---~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
-...++.+..+ .. ..-.|++|+.||+|+.+..+.. ++.+.. +++++.+||+++.+.+++++.+.
T Consensus 125 ~~~t~e~~~~~-~~--~~i~~iIV~vNK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~ 198 (205)
T d2qn6a3 125 QPQTREHFVAL-GI--IGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIE 198 (205)
T ss_dssp CHHHHHHHHHH-HH--TTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHH
T ss_pred chhHHHHHHHH-HH--cCCceeeeccccCCCccchHHHHHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHH
Confidence 12222222222 21 1224889999999998763322 222222 26899999999888888876654
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=8.4e-13 Score=110.64 Aligned_cols=152 Identities=16% Similarity=0.049 Sum_probs=90.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCceeeeEEE-eeCceEEEEEEecCCCccccchHHHHhhccceeEeecce
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTVGFNMRK-ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGL 98 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~~~--~~~~pTig~~~~~-i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~ 98 (329)
.|+++|.+|||||||+|+|++.+.. .....|....... ...+...+..+|++|..................
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 80 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAAS------ 80 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTT------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccc------
Confidence 5899999999999999999987643 1222233333322 344555677789988653322111111100000
Q ss_pred eeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh
Q psy2970 99 YIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA 178 (329)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~ 178 (329)
+.....++++++.|..+.. .....+...+.+ ...|+++|+||+|....
T Consensus 81 --------------------------~~~~~~~~~l~~~d~~~~~--~~~~~~~~~l~~----~~~~~i~v~~k~d~~~~ 128 (179)
T d1egaa1 81 --------------------------SSIGDVELVIFVVEGTRWT--PDDEMVLNKLRE----GKAPVILAVNKVDNVQE 128 (179)
T ss_dssp --------------------------SCCCCEEEEEEEEETTCCC--HHHHHHHHHHHS----SSSCEEEEEESTTTCCC
T ss_pred --------------------------cchhhcceeEEEEecCccc--hhHHHHHHHhhh----ccCceeeeeeeeeccch
Confidence 0011123344888877543 233333333332 45688999999997765
Q ss_pred -----hhHHHHHHHhC-CcEEEEeccchHHHHHHhhhhc
Q psy2970 179 -----LDEKELIDRIM-IDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 179 -----~e~~~l~~~~~-~~~~etSAk~~~~~~~~l~~i~ 211 (329)
...+.+.++++ .+++++||+++.+.+++++.+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~ 167 (179)
T d1egaa1 129 KADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 167 (179)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred hhhhhhHhhhhhhhcCCCCEEEEeCcCCCCHHHHHHHHH
Confidence 23445555566 5799999999888888887765
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.40 E-value=1.3e-12 Score=114.74 Aligned_cols=138 Identities=16% Similarity=0.110 Sum_probs=93.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC-------C---------CC--CCCCCceeeeEEEeeCceEEEEEEecCCCcccc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG-------Q---------FS--QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR 79 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~-------~---------~~--~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~ 79 (329)
|..++|+++|..++|||||+++|... . .. ....-|+......+...+..+.+.||||..+|.
T Consensus 1 kp~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~ 80 (196)
T d1d2ea3 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV 80 (196)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHH
Confidence 34689999999999999999999741 0 11 111223333344567778889999999999887
Q ss_pred chHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCC
Q psy2970 80 SMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKP 159 (329)
Q Consensus 80 ~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~ 159 (329)
.........+|+++ +|+|+.+--. +...+.+..+..
T Consensus 81 ~~~~~~~~~aD~al-----------------------------------------lVVda~~G~~-~QT~~~~~~a~~-- 116 (196)
T d1d2ea3 81 KNMITGTAPLDGCI-----------------------------------------LVVAANDGPM-PQTREHLLLARQ-- 116 (196)
T ss_dssp HHHHHTSSCCSEEE-----------------------------------------EEEETTTCSC-HHHHHHHHHHHH--
T ss_pred HHHHHHHhhcCeEE-----------------------------------------EEEEcCCCCc-hhHHHHHHHHHH--
Confidence 76666778889998 9999986422 233333333322
Q ss_pred cCCCCcEEEEEEcCCCCChh--------hHHHHHHHhC-----CcEEEEeccch
Q psy2970 160 QLIGIPILVLGNKRDLPNAL--------DEKELIDRIM-----IDFWITLTLLI 200 (329)
Q Consensus 160 ~~~~iPIiLVgNK~Dl~~~~--------e~~~l~~~~~-----~~~~etSAk~~ 200 (329)
....|++|+.||+|+.... +..++...++ ++++.+||+.+
T Consensus 117 -~~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~pii~iSa~~g 169 (196)
T d1d2ea3 117 -IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCA 169 (196)
T ss_dssp -TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHH
T ss_pred -hcCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCcccCEEEEEEcccc
Confidence 1335799999999997532 2333344444 56999999875
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.39 E-value=8.6e-13 Score=116.22 Aligned_cols=137 Identities=18% Similarity=0.216 Sum_probs=93.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC--------CCC-----------CCCCCceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG--------QFS-----------QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~--------~~~-----------~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
|..++|+++|..++|||||+++|+.. ... ....-|+...+..+..++.++.+.||||..+|
T Consensus 1 k~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df 80 (204)
T d2c78a3 1 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 80 (204)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhh
Confidence 35699999999999999999999621 110 01123444455567788889999999999999
Q ss_pred cchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC
Q psy2970 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK 158 (329)
Q Consensus 79 ~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~ 158 (329)
.......++.+|+++ +|+|+.+--..+ ..+.+..+.
T Consensus 81 ~~~~~~~~~~aD~av-----------------------------------------lVvda~~Gv~~q-t~~~~~~~~-- 116 (204)
T d2c78a3 81 IKNMITGAAQMDGAI-----------------------------------------LVVSAADGPMPQ-TREHILLAR-- 116 (204)
T ss_dssp HHHHHHHHTTCSSEE-----------------------------------------EEEETTTCCCHH-HHHHHHHHH--
T ss_pred HHHHHHHHHHCCEEE-----------------------------------------EEEECCCCCcHH-HHHHHHHHH--
Confidence 887777888999999 999998643322 223233332
Q ss_pred CcCCCCc-EEEEEEcCCCCChh--------hHHHHHHHhC-----CcEEEEeccch
Q psy2970 159 PQLIGIP-ILVLGNKRDLPNAL--------DEKELIDRIM-----IDFWITLTLLI 200 (329)
Q Consensus 159 ~~~~~iP-IiLVgNK~Dl~~~~--------e~~~l~~~~~-----~~~~etSAk~~ 200 (329)
..++| ++++.||+|+.+.. +.+++...++ ++++..||...
T Consensus 117 --~~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~i~~sa~~~ 170 (204)
T d2c78a3 117 --QVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLA 170 (204)
T ss_dssp --HTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHH
T ss_pred --HcCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCCcccceeeeeechhh
Confidence 24666 77789999986532 1223333333 56888888763
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=4.6e-12 Score=105.50 Aligned_cols=154 Identities=10% Similarity=0.039 Sum_probs=79.3
Q ss_pred cCCCCceEEEEEcCCCCCHHHHHHHHHcCCCCC--CCCCceeeeEEE-eeCceEEEEEEecC-CCccccc-------hHH
Q psy2970 15 LFWKEEMELTLVGLQCSGKTTFVNVIASGQFSQ--DMIPTVGFNMRK-ITKGNVTIKVWDIG-GQPRFRS-------MWE 83 (329)
Q Consensus 15 ~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~~--~~~pTig~~~~~-i~~~~~~l~I~Dtp-G~e~~~~-------~~~ 83 (329)
+...+..+|+++|.+|||||||+|++.+.+... ...++....... ...........+.+ +...... ...
T Consensus 11 ~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (188)
T d1puia_ 11 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALG 90 (188)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhh
Confidence 334567999999999999999999999876531 122222222221 12222222222222 2221111 111
Q ss_pred HHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCC
Q psy2970 84 RYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIG 163 (329)
Q Consensus 84 ~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~ 163 (329)
.....++.+. +++.+.|..... ......++..+.. ..
T Consensus 91 ~~~~~~~~~~--------------------------------------~~~~~~~~~~~~-~~~~~~~~~~~~~----~~ 127 (188)
T d1puia_ 91 EYLEKRQSLQ--------------------------------------GLVVLMDIRHPL-KDLDQQMIEWAVD----SN 127 (188)
T ss_dssp HHHHHCTTEE--------------------------------------EEEEEEETTSCC-CHHHHHHHHHHHH----TT
T ss_pred hhhhhhhhee--------------------------------------EEEEeecccccc-hhHHHHHHHHhhh----cc
Confidence 1122222222 111444544332 3333444444433 46
Q ss_pred CcEEEEEEcCCCCChhh----HHHHHHHh-----CCcEEEEeccchHHHHHHhhhhc
Q psy2970 164 IPILVLGNKRDLPNALD----EKELIDRI-----MIDFWITLTLLIRWCESFLHHFG 211 (329)
Q Consensus 164 iPIiLVgNK~Dl~~~~e----~~~l~~~~-----~~~~~etSAk~~~~~~~~l~~i~ 211 (329)
.++++++||+|+.+..+ .+++.+.+ ..+++.+||+++.+.+++.+.+.
T Consensus 128 ~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~vSA~~g~Gid~L~~~i~ 184 (188)
T d1puia_ 128 IAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLD 184 (188)
T ss_dssp CCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHH
T ss_pred ccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEEeCCCCCCHHHHHHHHH
Confidence 78999999999988633 23333333 25789999999988888877654
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.28 E-value=2.1e-11 Score=109.00 Aligned_cols=140 Identities=19% Similarity=0.194 Sum_probs=91.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHc--CCCCC---------------------------------CCCCceeeeEEEee
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIAS--GQFSQ---------------------------------DMIPTVGFNMRKIT 61 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~--~~~~~---------------------------------~~~pTig~~~~~i~ 61 (329)
.+..++|+++|..++|||||+.+|+. +.+.. ....|+......+.
T Consensus 6 ~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 85 (222)
T d1zunb3 6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 85 (222)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEe
Confidence 45678999999999999999999963 11100 00111111222344
Q ss_pred CceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCC
Q psy2970 62 KGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAAD 141 (329)
Q Consensus 62 ~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~ 141 (329)
..+..+.+.|+||+++|......-...+|+++ +|+|+.+
T Consensus 86 ~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ai-----------------------------------------lVvda~~ 124 (222)
T d1zunb3 86 TAKRKFIIADTPGHEQYTRNMATGASTCDLAI-----------------------------------------ILVDARY 124 (222)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEE-----------------------------------------EEEETTT
T ss_pred ccceEEEEEeccchhhhhhhhccccccCceEE-----------------------------------------EEecccc
Confidence 56678999999999999777777788899999 9999976
Q ss_pred cccHHHHHHHHHHHHhCCcCCCCc-EEEEEEcCCCCCh---------hhHHHHHHHhC-----CcEEEEeccchHH
Q psy2970 142 TDKLEASRNELHALIEKPQLIGIP-ILVLGNKRDLPNA---------LDEKELIDRIM-----IDFWITLTLLIRW 202 (329)
Q Consensus 142 ~~S~~~~~~~l~~i~~~~~~~~iP-IiLVgNK~Dl~~~---------~e~~~l~~~~~-----~~~~etSAk~~~~ 202 (329)
--. ....+.+. +.. ..++| ++++.||+|+.+. .+...+.++.+ ++|+++||+++.+
T Consensus 125 G~~-~Qt~e~~~-~~~---~~gv~~iiv~vNK~D~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~n 195 (222)
T d1zunb3 125 GVQ-TQTRRHSY-IAS---LLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDN 195 (222)
T ss_dssp CSC-HHHHHHHH-HHH---HTTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTT
T ss_pred Ccc-cchHHHHH-HHH---HcCCCEEEEEEEccccccccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCcc
Confidence 422 12222222 222 24555 7889999999863 12344555554 3689999999543
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.22 E-value=5.2e-11 Score=107.92 Aligned_cols=70 Identities=17% Similarity=0.180 Sum_probs=49.0
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCc-eeeeEEEeeCceEEEEEEecCCCcc
Q psy2970 7 RILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASGQFS--QDMIPT-VGFNMRKITKGNVTIKVWDIGGQPR 77 (329)
Q Consensus 7 ~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~~~~--~~~~pT-ig~~~~~i~~~~~~l~I~DtpG~e~ 77 (329)
.++..++.. .+.+++|+|+|.+|||||||+|.+++.+.. ....++ ..........++..+.++||||..+
T Consensus 20 e~~~~l~~~-~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~ 92 (257)
T d1h65a_ 20 ELLGNLKQE-DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIE 92 (257)
T ss_dssp HHHHHHHHT-TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEE
T ss_pred HHHHHHhhc-CCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccC
Confidence 344444443 357899999999999999999999987643 122233 3333444556678899999999653
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.21 E-value=1.1e-10 Score=107.89 Aligned_cols=129 Identities=17% Similarity=0.181 Sum_probs=94.9
Q ss_pred ce-EEEEEcCCCCCHHHHHHHHHc--CCCC------------------CCCCCceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 20 EM-ELTLVGLQCSGKTTFVNVIAS--GQFS------------------QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 20 ~l-kIlllG~~gvGKSSLin~l~~--~~~~------------------~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
++ +|+++|..++|||||+.+++. +... ....-|+......+..++.++++.||||..+|
T Consensus 5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF 84 (276)
T d2bv3a2 5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDF 84 (276)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSC
T ss_pred hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhh
Confidence 44 799999999999999999953 1110 11123344445567788999999999999999
Q ss_pred cchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhC
Q psy2970 79 RSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEK 158 (329)
Q Consensus 79 ~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~ 158 (329)
.......++-+|+.| +|+|..+--.-... ..++...
T Consensus 85 ~~e~~~~l~~~D~av-----------------------------------------lVvda~~Gv~~~T~-~~w~~a~-- 120 (276)
T d2bv3a2 85 TIEVERSMRVLDGAI-----------------------------------------VVFDSSQGVEPQSE-TVWRQAE-- 120 (276)
T ss_dssp STTHHHHHHHCCEEE-----------------------------------------EEEETTTSSCHHHH-HHHHHHH--
T ss_pred HHHHHHHHHhhhheE-----------------------------------------EeccccCCcchhHH-HHHHHHH--
Confidence 998888999999999 99999875432332 3334442
Q ss_pred CcCCCCcEEEEEEcCCCCCh---hhHHHHHHHhCCcEEE
Q psy2970 159 PQLIGIPILVLGNKRDLPNA---LDEKELIDRIMIDFWI 194 (329)
Q Consensus 159 ~~~~~iPIiLVgNK~Dl~~~---~e~~~l~~~~~~~~~e 194 (329)
..++|.+++.||.|.+.. .-.+++.++++...+.
T Consensus 121 --~~~lP~i~fINKmDr~~ad~~~~l~ei~~~l~~~~vp 157 (276)
T d2bv3a2 121 --KYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVV 157 (276)
T ss_dssp --TTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEEE
T ss_pred --HcCCCEEEEEecccccccccchhHHHHHHHhCCCeEE
Confidence 358999999999999886 4467788888865433
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.12 E-value=7.9e-11 Score=104.39 Aligned_cols=140 Identities=16% Similarity=0.167 Sum_probs=88.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc--CCC-------------------------------CCCCCCceeeeEEEeeCce
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS--GQF-------------------------------SQDMIPTVGFNMRKITKGN 64 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~--~~~-------------------------------~~~~~pTig~~~~~i~~~~ 64 (329)
|..++|+++|.-++|||||+.+|+. +.. ......|+......++.++
T Consensus 1 kp~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~ 80 (224)
T d1jnya3 1 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 80 (224)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCC
Confidence 3568999999999999999999852 100 0111223333334467778
Q ss_pred EEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCccc
Q psy2970 65 VTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDK 144 (329)
Q Consensus 65 ~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S 144 (329)
..+.+.||||+.+|......-.+-+|+.+ +|+|+.+--.
T Consensus 81 ~~i~iiDtPGH~df~~~~~~g~~~~D~al-----------------------------------------lVVda~~G~~ 119 (224)
T d1jnya3 81 YFFTIIDAPGHRDFVKNMITGASQADAAI-----------------------------------------LVVSAKKGEY 119 (224)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEE-----------------------------------------EEEECSTTHH
T ss_pred ceeEEeeCCCcHHHHHHHHHHHHhhceEE-----------------------------------------EEEecccCcc
Confidence 89999999999999888888888899999 9999986310
Q ss_pred ------HHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh-----------hhHHHHHHHhC-----CcEEEEeccchH
Q psy2970 145 ------LEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-----------LDEKELIDRIM-----IDFWITLTLLIR 201 (329)
Q Consensus 145 ------~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~-----------~e~~~l~~~~~-----~~~~etSAk~~~ 201 (329)
.....+-+.-. .. ....+++++.||+|+... .+..++...++ ++++.+||..+.
T Consensus 120 ~~t~~~~~qt~e~l~~~-~~--~~~~~iIv~iNK~D~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~ 195 (224)
T d1jnya3 120 EAGMSVEGQTREHIILA-KT--MGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGD 195 (224)
T ss_dssp HHHHSTTCHHHHHHHHH-HH--TTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTB
T ss_pred cccccccchhHHHHHHH-HH--hCCCceEEEEEcccCCCccccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCC
Confidence 11111111111 11 122458889999998742 12334444443 468899998854
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.11 E-value=4.8e-10 Score=102.87 Aligned_cols=122 Identities=18% Similarity=0.150 Sum_probs=88.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC--CCC------------------CCCCCceeeeEEEeeCceEEEEEEecCCCccccch
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG--QFS------------------QDMIPTVGFNMRKITKGNVTIKVWDIGGQPRFRSM 81 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~--~~~------------------~~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~~~ 81 (329)
+|+++|..++|||||+.++... ... .....|+...+..+..++.++.++||||..+|...
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e 83 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGE 83 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhhh
Confidence 6899999999999999999521 110 01123444455567778889999999999999988
Q ss_pred HHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcC
Q psy2970 82 WERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQL 161 (329)
Q Consensus 82 ~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~ 161 (329)
....++.+|+.+ +|+|..+--.- .....++.+.+
T Consensus 84 ~~~al~~~D~av-----------------------------------------lvvda~~Gv~~-~t~~~~~~~~~---- 117 (267)
T d2dy1a2 84 IRGALEAADAAL-----------------------------------------VAVSAEAGVQV-GTERAWTVAER---- 117 (267)
T ss_dssp HHHHHHHCSEEE-----------------------------------------EEEETTTCSCH-HHHHHHHHHHH----
T ss_pred hhhhhcccCceE-----------------------------------------EEeeccCCccc-hhHHHHHhhhh----
Confidence 888999999999 99999864332 22333333332
Q ss_pred CCCcEEEEEEcCCCCCh--hhHHHHHHHhC
Q psy2970 162 IGIPILVLGNKRDLPNA--LDEKELIDRIM 189 (329)
Q Consensus 162 ~~iPIiLVgNK~Dl~~~--~e~~~l~~~~~ 189 (329)
.++|.+++.||+|.... ...+++.++++
T Consensus 118 ~~~p~~i~iNk~D~~~~~~~~l~~~~~~lg 147 (267)
T d2dy1a2 118 LGLPRMVVVTKLDKGGDYYALLEDLRSTLG 147 (267)
T ss_dssp TTCCEEEEEECGGGCCCHHHHHHHHHHHHC
T ss_pred cccccccccccccccccchhhhhhHHHHhc
Confidence 57899999999997543 34566777777
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.09 E-value=3.2e-11 Score=108.89 Aligned_cols=138 Identities=17% Similarity=0.206 Sum_probs=95.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc--CC--------------------CC-----------CCCCCceeeeEEEeeCce
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS--GQ--------------------FS-----------QDMIPTVGFNMRKITKGN 64 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~--~~--------------------~~-----------~~~~pTig~~~~~i~~~~ 64 (329)
|..++|+++|..++|||||+.+|+. +. +. .+..-|+...+..+...+
T Consensus 4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~ 83 (239)
T d1f60a3 4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 83 (239)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC
Confidence 4468999999999999999999952 11 00 122345555566677888
Q ss_pred EEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCccc
Q psy2970 65 VTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADTDK 144 (329)
Q Consensus 65 ~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~~S 144 (329)
.++.|.||||+.+|......-...+|+.+ +|+|+.+-.
T Consensus 84 ~~i~iiDtPGH~df~~~~~~g~~~~D~ai-----------------------------------------lvvda~~G~- 121 (239)
T d1f60a3 84 YQVTVIDAPGHRDFIKNMITGTSQADCAI-----------------------------------------LIIAGGVGE- 121 (239)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEE-----------------------------------------EEEECSHHH-
T ss_pred EEEEEEECCCcHHHHHHHHHHHHHhCEEE-----------------------------------------EEEECCCCc-
Confidence 99999999999999877777888899999 999987421
Q ss_pred HH-------HHHHHHHHHHhCCcCCCCc-EEEEEEcCCCCCh---------hhHHHHHHHhC-----CcEEEEeccchH
Q psy2970 145 LE-------ASRNELHALIEKPQLIGIP-ILVLGNKRDLPNA---------LDEKELIDRIM-----IDFWITLTLLIR 201 (329)
Q Consensus 145 ~~-------~~~~~l~~i~~~~~~~~iP-IiLVgNK~Dl~~~---------~e~~~l~~~~~-----~~~~etSAk~~~ 201 (329)
|+ ...+.+... . ..++| ++++.||+|+.+. .+..++....+ ++++.+||..+.
T Consensus 122 ~e~g~~~~~QT~eh~~~~-~---~~gv~~iiv~iNKmD~~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ 196 (239)
T d1f60a3 122 FEAGISKDGQTREHALLA-F---TLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGD 196 (239)
T ss_dssp HHHHTCTTSHHHHHHHHH-H---HTTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCB
T ss_pred cccccCchHhHHHHHHHH-H---HcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCC
Confidence 11 112212111 1 24565 7889999998764 12344444444 568899998853
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.08 E-value=1.3e-10 Score=111.96 Aligned_cols=62 Identities=15% Similarity=0.226 Sum_probs=38.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCCC------CCCCceeeeEEEeeCceEEEEEEecCCCcccc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQFSQ------DMIPTVGFNMRKITKGNVTIKVWDIGGQPRFR 79 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~~~------~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~~ 79 (329)
+.+++|+++|.+|||||||+|+|.+..... ...+|+.........+.-.+.+|||||.....
T Consensus 54 ~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~ 121 (400)
T d1tq4a_ 54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTN 121 (400)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCCCeEEEEeCCCccccc
Confidence 457999999999999999999999854321 11122221111111222246799999976543
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.07 E-value=2.8e-10 Score=102.73 Aligned_cols=149 Identities=16% Similarity=0.184 Sum_probs=82.5
Q ss_pred HhcCCCCceEEEEEcCCCCCHHHHHHHHHc--CCCC-------------------------------CCCCCceeeeEEE
Q psy2970 13 KSLFWKEEMELTLVGLQCSGKTTFVNVIAS--GQFS-------------------------------QDMIPTVGFNMRK 59 (329)
Q Consensus 13 ~~~~~~k~lkIlllG~~gvGKSSLin~l~~--~~~~-------------------------------~~~~pTig~~~~~ 59 (329)
+....|..++|+++|..++|||||+.+|+. +.+. .....|+......
T Consensus 17 ~~~~~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~ 96 (245)
T d1r5ba3 17 KDMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAY 96 (245)
T ss_dssp HHHSCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCE
T ss_pred HHhcCCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccc
Confidence 444456778999999999999999999942 1000 0111222222223
Q ss_pred eeCceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEEC
Q psy2970 60 ITKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDA 139 (329)
Q Consensus 60 i~~~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dv 139 (329)
+..+...+.+.||||+..|......-...+|+.+ +|+|+
T Consensus 97 ~~~~~~~i~~iDtPGH~df~~~~~~g~~~aD~ai-----------------------------------------lVVda 135 (245)
T d1r5ba3 97 FETEHRRFSLLDAPGHKGYVTNMINGASQADIGV-----------------------------------------LVISA 135 (245)
T ss_dssp EECSSEEEEECCCCC-----------TTSCSEEE-----------------------------------------EEEEC
T ss_pred cccccceeeeecccccccchhhhhhhhhhhccee-----------------------------------------eEEEc
Confidence 4566778999999999999777777778888888 99999
Q ss_pred CCcc---cH---HHHHHHHHHHHhCCcCCCCc-EEEEEEcCCCCCh----h-------hHHHHHHHh-------CCcEEE
Q psy2970 140 ADTD---KL---EASRNELHALIEKPQLIGIP-ILVLGNKRDLPNA----L-------DEKELIDRI-------MIDFWI 194 (329)
Q Consensus 140 t~~~---S~---~~~~~~l~~i~~~~~~~~iP-IiLVgNK~Dl~~~----~-------e~~~l~~~~-------~~~~~e 194 (329)
.+-. ++ ....+.+.-+ . ..++| ++++.||+|++.. . +.+++.+++ .+++++
T Consensus 136 ~~G~~~~~~~~~~QT~e~l~l~-~---~~~i~~iiv~iNKmD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VP 211 (245)
T d1r5ba3 136 RRGEFEAGFERGGQTREHAVLA-R---TQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMP 211 (245)
T ss_dssp STTHHHHTTSTTCCHHHHHHHH-H---HTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEE
T ss_pred CCCccCCccccccchHHHHHHH-H---HcCCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEE
Confidence 7521 00 0112222111 1 23454 7899999999642 1 122222232 257999
Q ss_pred EeccchHHHHHH
Q psy2970 195 TLTLLIRWCESF 206 (329)
Q Consensus 195 tSAk~~~~~~~~ 206 (329)
+||+++.+..+.
T Consensus 212 iSA~~G~nI~~~ 223 (245)
T d1r5ba3 212 VSAYTGQNVKDR 223 (245)
T ss_dssp CBTTTTBTTSSC
T ss_pred eeccCCCCcccc
Confidence 999997665443
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.93 E-value=2.4e-09 Score=101.36 Aligned_cols=114 Identities=18% Similarity=0.179 Sum_probs=78.9
Q ss_pred CCce-EEEEEcCCCCCHHHHHHHHHc--CCCC----------------CCCCCceeeeEEE----------------eeC
Q psy2970 18 KEEM-ELTLVGLQCSGKTTFVNVIAS--GQFS----------------QDMIPTVGFNMRK----------------ITK 62 (329)
Q Consensus 18 ~k~l-kIlllG~~gvGKSSLin~l~~--~~~~----------------~~~~pTig~~~~~----------------i~~ 62 (329)
.+.+ +|+++|..++|||||+.+|.. +... ....-|+...... .+.
T Consensus 14 ~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~ 93 (341)
T d1n0ua2 14 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 93 (341)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccc
Confidence 3567 599999999999999999962 1110 0011122111111 134
Q ss_pred ceEEEEEEecCCCccccchHHHHhhccceeEeecceeeehhccccccccccCCCcCCCCchhhhhhhcceeEEEEECCCc
Q psy2970 63 GNVTIKVWDIGGQPRFRSMWERYCRGVNAIVWTGGLYIVSKHIKRSAILYYEPVDLGVSGPMWLSLLFQLIKYMVDAADT 142 (329)
Q Consensus 63 ~~~~l~I~DtpG~e~~~~~~~~~~~~ad~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV~Dvt~~ 142 (329)
+.+.+.+.||||+.+|.......++-+|+.+ +|+|+.+-
T Consensus 94 ~~~~inliDtPGh~dF~~ev~~al~~~D~al-----------------------------------------lVVda~eG 132 (341)
T d1n0ua2 94 NSFLINLIDSPGHVDFSSEVTAALRVTDGAL-----------------------------------------VVVDTIEG 132 (341)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEE-----------------------------------------EEEETTTB
T ss_pred cceEEEEEcCCCcHHHHHHHHHHHhhcCceE-----------------------------------------EEEecccC
Confidence 6788999999999999999888999999999 99999875
Q ss_pred ccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCC
Q psy2970 143 DKLEASRNELHALIEKPQLIGIPILVLGNKRDLPN 177 (329)
Q Consensus 143 ~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~ 177 (329)
-..+.. ..++...+ .++|++++.||+|...
T Consensus 133 v~~qT~-~~~~~a~~----~~~p~i~viNKiDr~~ 162 (341)
T d1n0ua2 133 VCVQTE-TVLRQALG----ERIKPVVVINKVDRAL 162 (341)
T ss_dssp SCHHHH-HHHHHHHH----TTCEEEEEEECHHHHH
T ss_pred cchhHH-HHHHHHHH----cCCCeEEEEECccccc
Confidence 433333 33333333 5789999999999743
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=98.83 E-value=1.1e-09 Score=95.09 Aligned_cols=50 Identities=12% Similarity=-0.045 Sum_probs=35.4
Q ss_pred CCCcEEEEEEcCCCCChhhHHHHH-------------------------------HH--hCCcEEEEeccchHHHHHHhh
Q psy2970 162 IGIPILVLGNKRDLPNALDEKELI-------------------------------DR--IMIDFWITLTLLIRWCESFLH 208 (329)
Q Consensus 162 ~~iPIiLVgNK~Dl~~~~e~~~l~-------------------------------~~--~~~~~~etSAk~~~~~~~~l~ 208 (329)
...|.++|.||+|+....+.+.+. ++ ..++++.+||+++.+.++++.
T Consensus 156 ~~~~~ivvinK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~ 235 (244)
T d1yrba1 156 LGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLET 235 (244)
T ss_dssp HTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHH
T ss_pred hCCCceeeeeccccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHH
Confidence 468999999999998763322111 11 236899999999888888876
Q ss_pred hhc
Q psy2970 209 HFG 211 (329)
Q Consensus 209 ~i~ 211 (329)
.+.
T Consensus 236 ~l~ 238 (244)
T d1yrba1 236 LAY 238 (244)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.78 E-value=1.5e-08 Score=93.00 Aligned_cols=38 Identities=16% Similarity=0.033 Sum_probs=28.5
Q ss_pred CCcEEEEEEcCCCCChhhHHH---HHHHhCCcEEEEeccch
Q psy2970 163 GIPILVLGNKRDLPNALDEKE---LIDRIMIDFWITLTLLI 200 (329)
Q Consensus 163 ~iPIiLVgNK~Dl~~~~e~~~---l~~~~~~~~~etSAk~~ 200 (329)
..|+++++||.|.......++ .+++.+...+.+||...
T Consensus 214 ~kP~~~v~Nk~d~~~~e~~~~~~~~~~~~~~~vi~~sa~~E 254 (319)
T d1wxqa1 214 NKPMVIAANKADAASDEQIKRLVREEEKRGYIVIPTSAAAE 254 (319)
T ss_dssp HSCEEEEEECGGGSCHHHHHHHHHHHHHTTCEEEEECHHHH
T ss_pred cCchhhhcccccchhhHHHHHHHHHHhhcCCEEEEecHHHH
Confidence 479999999999876644443 44566788899998874
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=98.64 E-value=2.5e-07 Score=83.77 Aligned_cols=74 Identities=22% Similarity=0.281 Sum_probs=46.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCC-CCC-----CCceeeeEEE----------eeCce---EEEEEEecCCCccc--
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQFS-QDM-----IPTVGFNMRK----------ITKGN---VTIKVWDIGGQPRF-- 78 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~~-~~~-----~pTig~~~~~----------i~~~~---~~l~I~DtpG~e~~-- 78 (329)
.+||-+||.||||||||+|++++.+.. ..| .|-+|+.... ++.+. ..+++.|+||...-
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~ 81 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence 479999999999999999999987653 222 2333432110 11111 25889999996432
Q ss_pred -----cchHHHHhhccceeE
Q psy2970 79 -----RSMWERYCRGVNAIV 93 (329)
Q Consensus 79 -----~~~~~~~~~~ad~iI 93 (329)
....-..++++|+++
T Consensus 82 ~g~Glg~~FL~~ir~~d~Li 101 (278)
T d1jala1 82 KGEGLGNKFLANIRETDAIG 101 (278)
T ss_dssp HHGGGTCCHHHHHHTCSEEE
T ss_pred cCCCccHHHHHHHHhccceE
Confidence 122345678899999
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=98.61 E-value=1.1e-07 Score=86.65 Aligned_cols=44 Identities=27% Similarity=0.558 Sum_probs=35.8
Q ss_pred ChHHHHHHHHHHHhcCCCCce---EEEEEcCCCCCHHHHHHHHHcCCC
Q psy2970 1 MFVLLNRILDWFKSLFWKEEM---ELTLVGLQCSGKTTFVNVIASGQF 45 (329)
Q Consensus 1 m~~~~~~~~~~~~~~~~~k~l---kIlllG~~gvGKSSLin~l~~~~~ 45 (329)
|..++|++.|.+..+- ...+ +|+|+|..++|||||+|+|++.++
T Consensus 3 l~~~~n~l~d~~~~~~-~~~~~lP~ivVvG~~ssGKSSliNaLlG~~~ 49 (306)
T d1jwyb_ 3 LIPVINKLQDVFNTLG-SDPLDLPQIVVVGSQSSGKSSVLENIVGRDF 49 (306)
T ss_dssp HHHHHHHHHHHTTTSS-SCTTCCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred hHHHHHHHHHHHHHhC-cCCCCCCeEEEEeCCCCCHHHHHHHHhCCCC
Confidence 4678888888887653 2323 899999999999999999999876
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.60 E-value=2.4e-07 Score=83.63 Aligned_cols=52 Identities=21% Similarity=0.315 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHhcCCC---CceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCce
Q psy2970 2 FVLLNRILDWFKSLFWK---EEMELTLVGLQCSGKTTFVNVIASGQF-SQDMIPTV 53 (329)
Q Consensus 2 ~~~~~~~~~~~~~~~~~---k~lkIlllG~~gvGKSSLin~l~~~~~-~~~~~pTi 53 (329)
..+++++-|.++++--. .--+|+|+|..++|||||+|+|++.++ +....|++
T Consensus 5 ~~~~~~l~d~l~~lg~~~~~~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T 60 (299)
T d2akab1 5 IPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 60 (299)
T ss_dssp HHHHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSC
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccc
Confidence 45778888877776311 234799999999999999999999886 44444444
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.35 E-value=1.1e-06 Score=80.20 Aligned_cols=76 Identities=22% Similarity=0.353 Sum_probs=50.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCC-CceeeeEEE--ee---------------CceEEEEEEecCCCcc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASGQF--SQDMI-PTVGFNMRK--IT---------------KGNVTIKVWDIGGQPR 77 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~~~--~~~~~-pTig~~~~~--i~---------------~~~~~l~I~DtpG~e~ 77 (329)
+..+||.++|.||||||||+|++++... ...|+ .|+..+... +. .....+++.|+||...
T Consensus 8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~ 87 (296)
T d1ni3a1 8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 87 (296)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence 4679999999999999999999997643 22332 233322221 11 1124788999998542
Q ss_pred c-------cchHHHHhhccceeE
Q psy2970 78 F-------RSMWERYCRGVNAIV 93 (329)
Q Consensus 78 ~-------~~~~~~~~~~ad~iI 93 (329)
- ....-..++.+|+++
T Consensus 88 gA~~g~GLGn~fL~~ir~~d~li 110 (296)
T d1ni3a1 88 GASTGVGLGNAFLSHVRAVDAIY 110 (296)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEE
T ss_pred ccccccccHHHHHHHhhccceeE
Confidence 2 223445678899999
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=98.32 E-value=4e-07 Score=84.96 Aligned_cols=89 Identities=12% Similarity=0.041 Sum_probs=54.4
Q ss_pred chhhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhHH-----HHHHH---------
Q psy2970 122 GPMWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEK-----ELIDR--------- 187 (329)
Q Consensus 122 ~~~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~-----~l~~~--------- 187 (329)
.......+.+..++|.....-+..+..+.-+.++ +=++|.||+|+.+..+.. ++...
T Consensus 157 ~e~~~~~~~D~~v~v~~p~~GD~iQ~~k~gilE~---------aDi~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~ 227 (323)
T d2qm8a1 157 SETAVADLTDFFLVLMLPGAGDELQGIKKGIFEL---------ADMIAVNKADDGDGERRASAAASEYRAALHILTPPSA 227 (323)
T ss_dssp CHHHHHTTSSEEEEEECSCC------CCTTHHHH---------CSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBT
T ss_pred hhhhhhcccceEEEEeeccchhhhhhhhhhHhhh---------hheeeEeccccccchHHHHHHHHHHHHHhhccccccc
Confidence 3445566677777999887655444333333333 237899999988764322 12222
Q ss_pred -hCCcEEEEeccchHHHHHHhhhhcCCCchhhh
Q psy2970 188 -IMIDFWITLTLLIRWCESFLHHFGSHPNWAVK 219 (329)
Q Consensus 188 -~~~~~~etSAk~~~~~~~~l~~i~~~~~~~~~ 219 (329)
...+.+.+||+++.+++++.+.+..+.++..+
T Consensus 228 ~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~~~~ 260 (323)
T d2qm8a1 228 TWTPPVVTISGLHGKGLDSLWSRIEDHRSKLTA 260 (323)
T ss_dssp TBCCCEEEEBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 33579999999988888888888665555443
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=98.28 E-value=2.5e-07 Score=86.56 Aligned_cols=87 Identities=14% Similarity=0.026 Sum_probs=52.2
Q ss_pred hhhhhhcceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhHH----HHHH----------HhC
Q psy2970 124 MWLSLLFQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEK----ELID----------RIM 189 (329)
Q Consensus 124 ~~~~~~~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~----~l~~----------~~~ 189 (329)
-.+....+..++|.+...-+..+..+..+.++ +=++|.||+|.+....+. ++.. .+.
T Consensus 162 ~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~---------aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~ 232 (327)
T d2p67a1 162 TEVARMVDCFISLQIAGGGDDLQGIKKGLMEV---------ADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQ 232 (327)
T ss_dssp HHHHTTCSEEEEEECC------CCCCHHHHHH---------CSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBC
T ss_pred hhhhhccceEEEEecCCCchhhhhhchhhhcc---------ccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCc
Confidence 35666777777888765433333333333333 226888999999864322 2211 122
Q ss_pred CcEEEEeccchHHHHHHhhhhcCCCchhhh
Q psy2970 190 IDFWITLTLLIRWCESFLHHFGSHPNWAVK 219 (329)
Q Consensus 190 ~~~~etSAk~~~~~~~~l~~i~~~~~~~~~ 219 (329)
.+.+.|||+++.+.+++.+.+..+.+|..+
T Consensus 233 p~V~~~SA~~g~Gi~eL~~~I~~~~~~l~~ 262 (327)
T d2p67a1 233 PRVLTCSALEKRGIDEIWHAIIDFKTALTA 262 (327)
T ss_dssp CEEEECBGGGTBSHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEeeCCCCHHHHHHHHHHHHHHHHh
Confidence 469999999988888888888665555443
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.08 E-value=3.4e-06 Score=76.00 Aligned_cols=59 Identities=15% Similarity=0.260 Sum_probs=36.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCceeeeEEEeeCceEEEEEEecCCCc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFS-QDMIPTVGFNMRKITKGNVTIKVWDIGGQP 76 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~-~~~~pTig~~~~~i~~~~~~l~I~DtpG~e 76 (329)
.++.++|+++|.||||||||+|++.+.+.. ....|.+......+.. +-.+.+.||||.-
T Consensus 109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~~-~~~~~l~DTPGi~ 168 (273)
T d1puja_ 109 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-GKELELLDTPGIL 168 (273)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE-TTTEEEEECCCCC
T ss_pred CCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEEC-CCCeEEecCCCcc
Confidence 457899999999999999999999987652 2233333333322211 1137899999964
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.67 E-value=0.00018 Score=62.60 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~ 43 (329)
.++.|..|+|||||++++...
T Consensus 6 ~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 6 TLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEESSSSSCHHHHHHHHHS
T ss_pred EEEeeCCCCCHHHHHHHHHhc
Confidence 567899999999999999875
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.65 E-value=2.2e-05 Score=69.71 Aligned_cols=55 Identities=25% Similarity=0.268 Sum_probs=36.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC-CC---------CCCCceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQF-SQ---------DMIPTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~-~~---------~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
-..+++|.+|||||||+|++.++.. .+ ..-.|.......++.+. .+.||||...+
T Consensus 96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg---~iiDTPG~r~~ 160 (225)
T d1u0la2 96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGG---YVVDTPGFANL 160 (225)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSC---EEESSCSSTTC
T ss_pred CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCCc---EEEeCCccccc
Confidence 3678999999999999999986532 11 11234444455554443 58999997655
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=97.22 E-value=0.0007 Score=58.77 Aligned_cols=55 Identities=16% Similarity=0.102 Sum_probs=36.2
Q ss_pred EEEECCC-cccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh-hhHHHHHHHhCCcEEEEec
Q psy2970 135 YMVDAAD-TDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-LDEKELIDRIMIDFWITLT 197 (329)
Q Consensus 135 lV~Dvt~-~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~-~e~~~l~~~~~~~~~etSA 197 (329)
+|+|.+. ++........+..+ + +--++.+|.|.... -.+-.++.+.++|+..++.
T Consensus 130 LVl~a~~~~~~~~~~~~~~~~~-------~-~~~lI~TKlDet~~~G~~l~~~~~~~~Pi~~i~~ 186 (207)
T d1okkd2 130 LVLDAVTGQNGLEQAKKFHEAV-------G-LTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGV 186 (207)
T ss_dssp EEEETTBCTHHHHHHHHHHHHH-------C-CSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEEC
T ss_pred EEeecccCchHHHHHHHhhhcc-------C-CceEEEeccCCCCCccHHHHHHHHHCCCEEEEeC
Confidence 8999875 44445555544444 1 12468899997655 4566778889999776664
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.20 E-value=0.00058 Score=59.26 Aligned_cols=30 Identities=7% Similarity=-0.234 Sum_probs=22.0
Q ss_pred EEEEEcCCCCCh-hhHHHHHHHhCCcEEEEe
Q psy2970 167 LVLGNKRDLPNA-LDEKELIDRIMIDFWITL 196 (329)
Q Consensus 167 iLVgNK~Dl~~~-~e~~~l~~~~~~~~~etS 196 (329)
=++.+|.|-... -.+-.++.+.+.|+..++
T Consensus 153 ~~I~TKlDe~~~~G~~l~~~~~~~~Pi~~i~ 183 (207)
T d1ls1a2 153 GLVLTKLDGDARGGAALSARHVTGKPIYFAG 183 (207)
T ss_dssp EEEEECGGGCSSCHHHHHHHHHHCCCEEEEC
T ss_pred eeEEeecCccccchHHHHHHHHHCCCEEEEe
Confidence 378899997654 345677888899876664
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=97.20 E-value=8.1e-05 Score=60.51 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
+||+++|++|+|||||++.+.+
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~ 22 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHh
Confidence 6899999999999999999986
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.19 E-value=5.4e-05 Score=67.36 Aligned_cols=54 Identities=19% Similarity=0.198 Sum_probs=32.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC-CC---------CCCCceeeeEEEeeCceEEEEEEecCCCccc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQF-SQ---------DMIPTVGFNMRKITKGNVTIKVWDIGGQPRF 78 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~~-~~---------~~~pTig~~~~~i~~~~~~l~I~DtpG~e~~ 78 (329)
-..+++|.+|||||||+|++.++.. .+ ..-.|....+...+ +. .+.||||...+
T Consensus 98 ~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~-gg---~iiDTPG~r~~ 161 (231)
T d1t9ha2 98 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTS-GG---LVADTPGFSSL 161 (231)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEET-TE---EEESSCSCSSC
T ss_pred ceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecC-CC---EEEECCccccc
Confidence 3568999999999999999987532 11 11123333333333 32 38899997655
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=97.15 E-value=0.00063 Score=59.38 Aligned_cols=55 Identities=13% Similarity=-0.003 Sum_probs=34.3
Q ss_pred EEEECCC-cccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh-hhHHHHHHHhCCcEEEEec
Q psy2970 135 YMVDAAD-TDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-LDEKELIDRIMIDFWITLT 197 (329)
Q Consensus 135 lV~Dvt~-~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~-~e~~~l~~~~~~~~~etSA 197 (329)
+|+|.+. ++.+......+..+ + +--++.+|.|.... -.+-.++.+.++|+..++.
T Consensus 135 LVl~a~~~~~~~~~~~~~~~~~-------~-~~~lI~TKlDe~~~~G~~l~~~~~~~~Pi~~i~~ 191 (213)
T d1vmaa2 135 LVIDATTGQNGLVQAKIFKEAV-------N-VTGIILTKLDGTAKGGITLAIARELGIPIKFIGV 191 (213)
T ss_dssp EEEEGGGHHHHHHHHHHHHHHS-------C-CCEEEEECGGGCSCTTHHHHHHHHHCCCEEEEEC
T ss_pred EeeccccCcchhhhhhhhcccc-------C-CceEEEecccCCCcccHHHHHHHHHCCCEEEEeC
Confidence 8999764 33344443333322 1 23578899997654 3466778888998776653
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=97.02 E-value=0.00055 Score=59.74 Aligned_cols=56 Identities=14% Similarity=-0.021 Sum_probs=35.9
Q ss_pred EEEECCC-cccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh-hhHHHHHHHhCCcEEEEecc
Q psy2970 135 YMVDAAD-TDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-LDEKELIDRIMIDFWITLTL 198 (329)
Q Consensus 135 lV~Dvt~-~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~-~e~~~l~~~~~~~~~etSAk 198 (329)
+|.|.+. ++........+..+ + +--++.+|.|-... -.+-.++.+.++|...++.-
T Consensus 133 LVl~a~~~~~~~~~~~~~~~~~-------~-~~~lIlTKlDe~~~~G~~l~~~~~~~~Pi~~i~~G 190 (211)
T d2qy9a2 133 LTIDASTGQNAVSQAKLFHEAV-------G-LTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVG 190 (211)
T ss_dssp EEEEGGGTHHHHHHHHHHHHHS-------C-CCEEEEECCTTCTTTTHHHHHHHHHCCCEEEEECS
T ss_pred eehhcccCcchHHHHhhhhhcc-------C-CceEEEeecCCCCCccHHHHHHHHHCCCEEEEeCC
Confidence 8999764 34444444433333 1 23578899998765 45667788889997776643
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.93 E-value=0.00023 Score=57.22 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.+.++|+|.|++||||||+.+.|...
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~ 28 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAE 28 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 57899999999999999999999753
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.90 E-value=0.00018 Score=57.55 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
+|+|.|++|||||||+++|..
T Consensus 9 ~I~i~G~~GsGKTTla~~La~ 29 (192)
T d1lw7a2 9 TVAILGGESSGKSVLVNKLAA 29 (192)
T ss_dssp EEEEECCTTSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999976
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.81 E-value=0.0013 Score=57.11 Aligned_cols=55 Identities=11% Similarity=-0.086 Sum_probs=34.0
Q ss_pred EEEECCCc-ccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh-hhHHHHHHHhCCcEEEEec
Q psy2970 135 YMVDAADT-DKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-LDEKELIDRIMIDFWITLT 197 (329)
Q Consensus 135 lV~Dvt~~-~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~-~e~~~l~~~~~~~~~etSA 197 (329)
+|+|.+.. +..+.....+..+ + +--++.+|.|.... -.+-.++.+.++|+..++.
T Consensus 132 LVl~a~~~~~~~~~~~~~~~~~-------~-~~~lI~TKlDet~~~G~~l~~~~~~~lPi~~it~ 188 (211)
T d1j8yf2 132 LVIDASIGQKAYDLASKFNQAS-------K-IGTIIITKMDGTAKGGGALSAVAATGATIKFIGT 188 (211)
T ss_dssp EEEEGGGGGGHHHHHHHHHHHC-------T-TEEEEEECTTSCSCHHHHHHHHHTTTCCEEEEEC
T ss_pred EEEecccCcchHHHHhhhhccc-------C-cceEEEecccCCCcccHHHHHHHHHCcCEEEEeC
Confidence 88887653 3333333322221 2 22467999998765 4566778888999776664
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.71 E-value=0.00032 Score=55.99 Aligned_cols=22 Identities=36% Similarity=0.394 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
.+|++.|+|||||||+.+.+..
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999965
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.59 E-value=0.0014 Score=57.66 Aligned_cols=77 Identities=12% Similarity=-0.045 Sum_probs=53.2
Q ss_pred ceeEEEEECCCccc-HHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhHHHH---HHHh--CCcEEEEeccchHHHH
Q psy2970 131 QLIKYMVDAADTDK-LEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKEL---IDRI--MIDFWITLTLLIRWCE 204 (329)
Q Consensus 131 ~~~~lV~Dvt~~~S-~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~~l---~~~~--~~~~~etSAk~~~~~~ 204 (329)
|.+++|+.+.+|+. ...+..++-... ..++|.+||.||+||.++.+.+.+ .+.+ +++.+.+||++....+
T Consensus 12 D~vliV~s~~~P~~~~~~ldR~Lv~a~----~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~~~~~~v~~vSa~~~~g~~ 87 (225)
T d1u0la2 12 DQVILVVTVKMPETSTYIIDKFLVLAE----KNELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIE 87 (225)
T ss_dssp CEEEEEECSSTTCCCHHHHHHHHHHHH----HTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHH----HcCCCEEEEEeCcccCCHHHHHHHHHhhcccccceeEEEeccccchhHh
Confidence 66778888877653 344444443332 368899999999999887554333 3322 4789999999988888
Q ss_pred HHhhhhc
Q psy2970 205 SFLHHFG 211 (329)
Q Consensus 205 ~~l~~i~ 211 (329)
.+.+.+.
T Consensus 88 ~L~~~l~ 94 (225)
T d1u0la2 88 ELKEYLK 94 (225)
T ss_dssp HHHHHHS
T ss_pred hHHHHhc
Confidence 8777664
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.58 E-value=0.00049 Score=54.85 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy2970 23 LTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~ 42 (329)
|.|+|.+|||||||++++..
T Consensus 5 i~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 5 LAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999974
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.54 E-value=0.00057 Score=55.67 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
++|+|+|+|||||||+.+.+..
T Consensus 1 m~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 1 MNLVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999865
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.48 E-value=0.00073 Score=55.95 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+.++|+++|+|||||||+.+.|..
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999975
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=96.46 E-value=0.0015 Score=58.13 Aligned_cols=58 Identities=17% Similarity=0.108 Sum_probs=42.5
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhHHHHHHHh---CCcEEEEeccc
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDEKELIDRI---MIDFWITLTLL 199 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~~~l~~~~---~~~~~etSAk~ 199 (329)
.|+|+.+|-+..+ ..+.+++ .+.|+++|.||+|+.+....+++.+.+ +...+.+|++.
T Consensus 21 ~V~DaR~P~ss~~--~~l~~~~-----~~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~~~~~i~isa~~ 81 (273)
T d1puja_ 21 ELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVN 81 (273)
T ss_dssp EEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTT
T ss_pred EEEECCCCCCCCC--HHHHHHH-----cCCCeEEEEECccCCchHHHHHHHHHHHhcCCccceeeccc
Confidence 9999988755332 2334443 257999999999999987666666655 46788999988
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.41 E-value=0.00088 Score=56.27 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=24.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
+.+.++|+|+|+|||||||+.+.|...
T Consensus 3 ~~r~mrIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 3 SARLLRAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp SSCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcceeEEEECCCCCCHHHHHHHHHHH
Confidence 457799999999999999999999763
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.39 E-value=0.00068 Score=56.17 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
++++|+|.|+|||||||+.+.|...
T Consensus 2 ~Pm~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 2 DPLKVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999998653
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.38 E-value=0.00085 Score=52.85 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~ 43 (329)
|++.|+|||||||+++++...
T Consensus 5 Iii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 788999999999999998653
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.36 E-value=0.00084 Score=55.24 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
++|+|+|+|||||||+.+.|...
T Consensus 1 M~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 1 MNIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999763
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.35 E-value=0.00082 Score=53.14 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~ 43 (329)
|++.|++||||||+.++|...
T Consensus 5 I~i~G~~GsGKTTva~~L~~~ 25 (176)
T d2bdta1 5 YIITGPAGVGKSTTCKRLAAQ 25 (176)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999753
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.32 E-value=0.00093 Score=54.82 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
++|+++|+|||||||+.+.|...
T Consensus 1 m~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 1 MRVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999998753
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.26 E-value=0.00089 Score=52.14 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
+|+++|++||||||+.+.+...
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999753
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.25 E-value=0.0024 Score=56.40 Aligned_cols=77 Identities=18% Similarity=0.113 Sum_probs=52.8
Q ss_pred ceeEEEEECCCcc-cHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCChhhH----H---HHHHHhCCcEEEEeccchHH
Q psy2970 131 QLIKYMVDAADTD-KLEASRNELHALIEKPQLIGIPILVLGNKRDLPNALDE----K---ELIDRIMIDFWITLTLLIRW 202 (329)
Q Consensus 131 ~~~~lV~Dvt~~~-S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~~e~----~---~l~~~~~~~~~etSAk~~~~ 202 (329)
|.+++|+++.+|+ ++..+..++-.. + ..++|.+||.||+||.++.+. + +....++++.+.+||++...
T Consensus 12 D~~~iV~s~~~P~~~~~~idR~Lv~a-~---~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa~~~~g 87 (231)
T d1t9ha2 12 DQAVLVFSAVQPSFSTALLDRFLVLV-E---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDS 87 (231)
T ss_dssp CEEEEEEESTTTTCCHHHHHHHHHHH-H---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTT
T ss_pred CEEEEEEECCCCCCCHHHHHHHHHHH-H---HcCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeeecCChhH
Confidence 5566888988764 344444444333 2 367899999999999875332 2 23345689999999999777
Q ss_pred HHHHhhhhc
Q psy2970 203 CESFLHHFG 211 (329)
Q Consensus 203 ~~~~l~~i~ 211 (329)
.+++.+.+.
T Consensus 88 l~~L~~~l~ 96 (231)
T d1t9ha2 88 LADIIPHFQ 96 (231)
T ss_dssp CTTTGGGGT
T ss_pred HHHHHHhhc
Confidence 777766553
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.23 E-value=0.0011 Score=54.39 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
++|+++|+|||||||..+.|..
T Consensus 1 m~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 1 MRIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999865
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.19 E-value=0.00098 Score=54.06 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=18.7
Q ss_pred eEE-EEEcCCCCCHHHHHHHHHc
Q psy2970 21 MEL-TLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkI-lllG~~gvGKSSLin~l~~ 42 (329)
+|| .|+|.+|||||||++++..
T Consensus 1 Mkii~I~G~~gSGKTTli~~l~~ 23 (165)
T d1xjca_ 1 MNVWQVVGYKHSGKTTLMEKWVA 23 (165)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 355 4999999999999999964
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.18 E-value=0.0013 Score=54.12 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.++|+|+|+|||||||+.+.|..
T Consensus 2 ~mrIvl~G~pGSGKtT~a~~La~ 24 (180)
T d1akya1 2 SIRMVLIGPPGAGKGTQAPNLQE 24 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999999975
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.16 E-value=0.0012 Score=54.35 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
.=|+++|.|||||||+.++|..
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~ 24 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTR 24 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999974
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.16 E-value=0.0011 Score=52.82 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
.|+|.|++|+|||||++++..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~ 23 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999999974
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.11 E-value=0.0016 Score=53.82 Aligned_cols=25 Identities=24% Similarity=0.163 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.+..-|+|+|+|||||||+.++|..
T Consensus 4 ~kp~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 4 SKPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4566789999999999999999975
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=96.06 E-value=0.031 Score=48.79 Aligned_cols=72 Identities=10% Similarity=0.006 Sum_probs=43.3
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCCcCCCCcE-EEEEEcCCCCChh-hHHHHHHHhCCcEEEEeccchHHHHHH
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPI-LVLGNKRDLPNAL-DEKELIDRIMIDFWITLTLLIRWCESF 206 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPI-iLVgNK~Dl~~~~-e~~~l~~~~~~~~~etSAk~~~~~~~~ 206 (329)
++.-..+..++......+..+.......+.++ -+|.|+.+..... ..+++++.++.+++.+-.....+.++.
T Consensus 148 lv~~~~~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~~~~~~~~~~~~~g~~vl~~IP~~~~v~eA~ 221 (289)
T d2afhe1 148 YIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDREDELIIALANKLGTQMIHFVPRDNVVQRAE 221 (289)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTTHHHHHHHHHHHHTSCEEEEECCCHHHHHHH
T ss_pred ecccchhHHHHHHHHHHHHHHHhhhhcccccccceeehhhcchhhHHHHHHHHHHcCCeEEEEEeccHHHHHHH
Confidence 34444455566666665555543222344554 3789999876654 367889999998886644444444443
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.00 E-value=0.0041 Score=55.87 Aligned_cols=69 Identities=22% Similarity=0.245 Sum_probs=47.6
Q ss_pred HHHHHHHhcCCCCce-EEEEEcCCCCCHHHHHHHHHcCCCC-----CCCCCceeeeEEE---eeCceEEEEEEecCCCcc
Q psy2970 7 RILDWFKSLFWKEEM-ELTLVGLQCSGKTTFVNVIASGQFS-----QDMIPTVGFNMRK---ITKGNVTIKVWDIGGQPR 77 (329)
Q Consensus 7 ~~~~~~~~~~~~k~l-kIlllG~~gvGKSSLin~l~~~~~~-----~~~~pTig~~~~~---i~~~~~~l~I~DtpG~e~ 77 (329)
..+..++.+ ++++ =|.++|+.++|||+|+|++++..+. .....|.|+-+.. .++.+..+-+.||.|...
T Consensus 20 e~l~~l~~~--~~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~ 97 (277)
T d1f5na2 20 EALKILSAI--TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 97 (277)
T ss_dssp HHHHHHHTC--CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred HHHHHHHcC--CCCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccc
Confidence 345556665 3444 5778999999999999999986532 2234566765543 245667889999999654
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.92 E-value=0.0025 Score=50.54 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
++.+-|.++|.+||||||+.+.|..
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~ 28 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQV 28 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457889999999999999988864
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.90 E-value=0.0019 Score=51.83 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=18.3
Q ss_pred eEEE-EEcCCCCCHHHHHHHHHc
Q psy2970 21 MELT-LVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIl-llG~~gvGKSSLin~l~~ 42 (329)
+||+ +.|.+||||||+++.+..
T Consensus 1 mkiivi~G~~GsGKTT~~~~La~ 23 (194)
T d1nksa_ 1 MKIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 4665 569999999999999864
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.83 E-value=0.0024 Score=52.60 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
++.|+|+|+|||||||..+++..
T Consensus 1 p~iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 1 PLVVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999975
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.75 E-value=0.0023 Score=51.04 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=17.8
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy2970 23 LTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~ 42 (329)
|+|.|.+||||||+++.+..
T Consensus 4 I~i~G~~GsGKsT~~~~L~~ 23 (190)
T d1khta_ 4 VVVTGVPGVGSTTSSQLAMD 23 (190)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67889999999999999854
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=95.75 E-value=0.041 Score=47.29 Aligned_cols=75 Identities=12% Similarity=0.043 Sum_probs=43.1
Q ss_pred cceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcE-EEEEEcCCCCChh-hHHHHHHHhCCcEEEEeccchHHHHH
Q psy2970 130 FQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIPI-LVLGNKRDLPNAL-DEKELIDRIMIDFWITLTLLIRWCES 205 (329)
Q Consensus 130 ~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPI-iLVgNK~Dl~~~~-e~~~l~~~~~~~~~etSAk~~~~~~~ 205 (329)
.+.++++.+. +..++.........+.......+.++ -+|.|+.+..... ..++++++++.+++.+=.....+.++
T Consensus 141 ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~~~~~~~~~~~~~~~~~~~IP~d~~i~~a 217 (269)
T d1cp2a_ 141 AQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANEYELLDAFAKELGSQLIHFVPRSPMVTKA 217 (269)
T ss_dssp CCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCCHHHHHHHHHHHTCCEEEEECCCHHHHHH
T ss_pred cCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCCccchhhhhHhhcCCeEEEEEecCHHHHHH
Confidence 3444455544 55566655554444433222233433 3788999987764 46778999999887654444444333
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.66 E-value=0.0069 Score=48.90 Aligned_cols=29 Identities=31% Similarity=0.393 Sum_probs=24.1
Q ss_pred hcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 14 SLFWKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 14 ~~~~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
++-.+.++=|.|-|++|||||||.++|..
T Consensus 16 ~~~~~~~~iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 16 AIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp TSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred hccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34456678899999999999999999964
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.63 E-value=0.0056 Score=52.17 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
--|++.|+||+|||||++++.+.
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~ 55 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEE 55 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999999763
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.59 E-value=0.0032 Score=50.10 Aligned_cols=21 Identities=38% Similarity=0.446 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~ 43 (329)
|+|.|++||||||+.+.+...
T Consensus 7 I~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 7 LLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp EEEEECTTSCHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678899999999999998653
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.56 E-value=0.0024 Score=51.74 Aligned_cols=21 Identities=43% Similarity=0.526 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
+|+++|.+||||||+.+.+..
T Consensus 3 ~IvliG~~G~GKSTig~~La~ 23 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAK 23 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.53 E-value=0.003 Score=52.44 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~ 43 (329)
|+|+|++|||||||++++...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 799999999999999999764
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.51 E-value=0.0032 Score=50.13 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy2970 23 LTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~ 42 (329)
++|.|++||||||+.+.+..
T Consensus 9 ivl~G~~GsGKsT~a~~La~ 28 (171)
T d1knqa_ 9 YVLMGVSGSGKSAVASEVAH 28 (171)
T ss_dssp EEEECSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56789999999999999975
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.50 E-value=0.0033 Score=49.75 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~ 43 (329)
|+|.|.+||||||+.+.|...
T Consensus 6 I~l~G~~GsGKsTva~~L~~~ 26 (178)
T d1qhxa_ 6 IILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 556699999999999999763
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.49 E-value=0.0043 Score=51.27 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=22.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.++..-|+++|.|||||||+.+++..
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45667899999999999999999864
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.42 E-value=0.0035 Score=51.54 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~ 43 (329)
|+|+|++|||||||++.+...
T Consensus 5 ivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 5 VVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 688999999999999999764
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.25 E-value=0.0039 Score=50.57 Aligned_cols=21 Identities=29% Similarity=0.607 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
+|+++|.+||||||+.+.+..
T Consensus 2 ~I~liG~~GsGKsTi~k~La~ 22 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAK 22 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999864
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.24 E-value=0.0027 Score=51.60 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+.+-|.+.|.|||||||+.+.|..
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~ 41 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEE 41 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356788999999999999999964
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=95.18 E-value=0.01 Score=50.89 Aligned_cols=29 Identities=28% Similarity=0.312 Sum_probs=24.1
Q ss_pred hcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 14 SLFWKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 14 ~~~~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.+.++++-+++++|+||||||+++..+..
T Consensus 37 iL~r~~k~n~lLvG~pGVGKTalv~~LA~ 65 (195)
T d1jbka_ 37 VLQRRTKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp HHTSSSSCEEEEECCTTSCHHHHHHHHHH
T ss_pred HHhccCCCCeEEEecCCcccHHHHHHHHH
Confidence 34456677999999999999999988865
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.16 E-value=0.0047 Score=51.04 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
-|+++|+|||||||+.+.+..
T Consensus 10 iI~i~GppGSGKsT~a~~La~ 30 (196)
T d1ukza_ 10 VIFVLGGPGAGKGTQCEKLVK 30 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999999976
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.09 E-value=0.0051 Score=51.33 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy2970 23 LTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~ 42 (329)
|+|+|++|||||||++++..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999865
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=95.06 E-value=0.011 Score=52.98 Aligned_cols=29 Identities=28% Similarity=0.253 Sum_probs=24.2
Q ss_pred hcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 14 SLFWKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 14 ~~~~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.+.++.+-+++++|+||||||+++..+..
T Consensus 33 iL~r~~k~n~lLVG~~GvGKTalv~~la~ 61 (268)
T d1r6bx2 33 VLCRRRKNNPLLVGESGVGKTAIAEGLAW 61 (268)
T ss_dssp HHTSSSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHhcCccCCcEEECCCCCcHHHHHHHHHH
Confidence 34456678999999999999999998865
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.04 E-value=0.0052 Score=50.85 Aligned_cols=23 Identities=30% Similarity=0.218 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
--|+|+|+|||||||+.+++...
T Consensus 9 ~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 9 KIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 34889999999999999999763
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.04 E-value=0.012 Score=49.43 Aligned_cols=24 Identities=25% Similarity=0.163 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.-.++|.|++|+|||++++.+...
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~ 66 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWEL 66 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998753
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.04 E-value=0.0057 Score=50.83 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~ 43 (329)
|+|+|++||||+||++++...
T Consensus 6 ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 6 LVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 889999999999999999854
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.96 E-value=0.01 Score=54.17 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQF 45 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~ 45 (329)
..+|++.|++|||||||++.+...-.
T Consensus 166 ~~nili~G~tgSGKTT~l~al~~~i~ 191 (323)
T d1g6oa_ 166 GKNVIVCGGTGSGKTTYIKSIMEFIP 191 (323)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCCEEEEeeccccchHHHHHHhhhcc
Confidence 45799999999999999999987443
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.92 E-value=0.0069 Score=50.52 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+.+.|++-|+|||||||..+.|..
T Consensus 2 k~i~IaIdGp~GsGKgT~ak~La~ 25 (223)
T d1q3ta_ 2 KTIQIAIDGPASSGKSTVAKIIAK 25 (223)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999965
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=94.86 E-value=0.012 Score=49.79 Aligned_cols=22 Identities=45% Similarity=0.499 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
-.+++.|+||+||||+++.+.+
T Consensus 36 ~~~Ll~GPpG~GKTtla~~la~ 57 (239)
T d1ixsb2 36 EHLLLFGPPGLGKTTLAHVIAH 57 (239)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999975
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=94.86 E-value=0.0066 Score=49.21 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy2970 23 LTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~ 42 (329)
|+++|.+||||||+.+.+..
T Consensus 5 Iil~G~~GsGKSTia~~LA~ 24 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELAR 24 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999964
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.78 E-value=0.016 Score=48.89 Aligned_cols=34 Identities=26% Similarity=0.275 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 6 NRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 6 ~~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
..+..|+... +.-.+++.|++|+||||+++.+..
T Consensus 34 ~~l~~~i~~~---~~~~lll~Gp~G~GKTtla~~iak 67 (231)
T d1iqpa2 34 KRLKHYVKTG---SMPHLLFAGPPGVGKTTAALALAR 67 (231)
T ss_dssp HHHHHHHHHT---CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHcC---CCCeEEEECCCCCcHHHHHHHHHH
Confidence 3445555443 223699999999999999999876
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.75 E-value=0.0074 Score=51.45 Aligned_cols=22 Identities=9% Similarity=0.217 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
=|+|+|++|||||||++++...
T Consensus 4 livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 4 LYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3788999999999999999864
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.74 E-value=0.015 Score=51.29 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 5 LNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 5 ~~~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
+.++.+++...-.+...-|+|.|.+|+|||||++.+.+.
T Consensus 29 ~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 29 VDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp HHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHh
Confidence 456777776654444556789999999999999998753
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=94.73 E-value=0.0074 Score=53.13 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.=+++++|++|+|||||++.+.+-
T Consensus 29 Ge~vaIvG~sGsGKSTLl~ll~gl 52 (241)
T d2pmka1 29 GEVIGIVGRSGSGKSTLTKLIQRF 52 (241)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 347999999999999999999773
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=94.58 E-value=0.0082 Score=51.13 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
-++++|+.|+|||||++.+.+-
T Consensus 29 i~~l~G~NGsGKSTLl~~i~gl 50 (200)
T d1sgwa_ 29 VVNFHGPNGIGKTTLLKTISTY 50 (200)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhcc
Confidence 4679999999999999999773
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=94.53 E-value=0.0084 Score=50.78 Aligned_cols=22 Identities=41% Similarity=0.483 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
-.+++.|+||+||||+++.+..
T Consensus 36 ~~~L~~GPpGtGKT~lA~~la~ 57 (238)
T d1in4a2 36 DHVLLAGPPGLGKTTLAHIIAS 57 (238)
T ss_dssp CCEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHh
Confidence 4699999999999999999875
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.52 E-value=0.02 Score=49.98 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
....|++.|+||+|||++++.+..
T Consensus 39 p~~~vLL~GppGtGKT~la~alA~ 62 (246)
T d1d2na_ 39 PLVSVLLEGPPHSGKTALAAKIAE 62 (246)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHhh
Confidence 345699999999999999999975
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=94.37 E-value=0.01 Score=52.57 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
=+++++|++|+|||||++.+.+
T Consensus 42 e~iaivG~sGsGKSTLl~ll~g 63 (253)
T d3b60a1 42 KTVALVGRSGSGKSTIASLITR 63 (253)
T ss_dssp CEEEEEECTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCChHHHHHHHHhc
Confidence 3799999999999999999876
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=94.36 E-value=0.01 Score=52.10 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
=.++++|++|+|||||++-+.+
T Consensus 29 e~vaivG~sGsGKSTLl~ll~g 50 (242)
T d1mv5a_ 29 SIIAFAGPSGGGKSTIFSLLER 50 (242)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999976
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.30 E-value=0.011 Score=52.32 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.=.++++|++|+|||||++.+.+
T Consensus 40 Ge~vaivG~sGsGKSTLl~li~g 62 (251)
T d1jj7a_ 40 GEVTALVGPNGSGKSTVAALLQN 62 (251)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 34789999999999999999876
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.24 E-value=0.011 Score=52.95 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.++|+|++|+|||||++.+.+-
T Consensus 64 ~vaivG~nGsGKSTLl~~i~Gl 85 (281)
T d1r0wa_ 64 MLAITGSTGSGKTSLLMLILGE 85 (281)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 6899999999999999999873
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.22 E-value=0.011 Score=49.71 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
--|+|.|++|+|||||++++..
T Consensus 30 ~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 30 PITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCcHHHHHHHHHH
Confidence 3578999999999999999875
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.21 E-value=0.012 Score=51.70 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
-+.++|++|+|||||++.+.+-
T Consensus 28 i~~liGpsGsGKSTLl~~i~Gl 49 (232)
T d2awna2 28 FVVFVGPSGCGKSTLLRMIAGL 49 (232)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5789999999999999998763
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.17 E-value=0.016 Score=48.97 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
++++.|++|+||||+++.+...
T Consensus 35 ~lll~Gp~G~GKTt~~~~la~~ 56 (252)
T d1sxje2 35 HLLLYGPNGTGKKTRCMALLES 56 (252)
T ss_dssp CEEEECSTTSSHHHHHHTHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHh
Confidence 5999999999999999998763
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.14 E-value=0.54 Score=38.38 Aligned_cols=65 Identities=11% Similarity=0.029 Sum_probs=36.2
Q ss_pred eEEEEECCCcccHHHHHHHHHHHHhCCcCCCCcEE-EEEEcCCCCChhh-HHHHHHHhCCcEEEEeccchHH
Q psy2970 133 IKYMVDAADTDKLEASRNELHALIEKPQLIGIPIL-VLGNKRDLPNALD-EKELIDRIMIDFWITLTLLIRW 202 (329)
Q Consensus 133 ~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIi-LVgNK~Dl~~~~e-~~~l~~~~~~~~~etSAk~~~~ 202 (329)
++++... +..++.........+.+ .+.|++ +|.||.|..+... .+...+..+.++.-+=.....+
T Consensus 137 viiv~~~-~~~s~~~~~~~~~~~~~----~~~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~IP~d~~v 203 (237)
T d1g3qa_ 137 ALLVTNP-EISCLTDTMKVGIVLKK----AGLAILGFVLNRYGRSDRDIPPEAAEDVMEVPLLAVIPEDPAI 203 (237)
T ss_dssp EEEEECS-CHHHHHHHHHHHHHHHH----TTCEEEEEEEEEETSCTTCCCHHHHHHHHCSCEEEEEECCHHH
T ss_pred ccccccc-cceecchhhHHHHHHhh----hhhhhhhhhhcccccccchhhhHHHHhhcCceEEEEeCCCHHH
Confidence 3366665 45566666666554432 466765 7899998765432 2233444566665433333333
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.11 E-value=0.013 Score=49.81 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
-.+++.|+||+||||+++.+...
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~ 75 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQE 75 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999864
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.07 E-value=0.014 Score=49.02 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
++++.|++|+||||+++.+...
T Consensus 37 ~lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 37 HLLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHHH
Confidence 5999999999999999999763
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.05 E-value=0.013 Score=51.69 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
-++++|++|+|||||++.+.+-
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl 47 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 4568999999999999999874
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.05 E-value=0.012 Score=48.24 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=23.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.++.+=|++-|..||||||+++.|..
T Consensus 6 ~~kp~~I~ieG~~GsGKTTl~~~L~~ 31 (197)
T d2vp4a1 6 GTQPFTVLIEGNIGSGKTTYLNHFEK 31 (197)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHH
Confidence 46788999999999999999999865
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.00 E-value=0.012 Score=51.44 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
-+.++|++|+|||||++.+.+-
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~gl 54 (230)
T d1l2ta_ 33 FVSIMGPSGSGKSTMLNIIGCL 54 (230)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCcchhhHhccCC
Confidence 5789999999999999977663
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.95 E-value=0.013 Score=52.79 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
-.++++||||||||.|.+++.+.
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhhc
Confidence 46899999999999999999763
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.95 E-value=0.017 Score=48.05 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
++-|.|.|++|||||||.++|..
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~~ 24 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIVQ 24 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 56789999999999999999865
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.94 E-value=0.029 Score=47.06 Aligned_cols=34 Identities=26% Similarity=0.316 Sum_probs=24.4
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 6 NRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 6 ~~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
..+..|++.. +.-++++.|++|+||||+++.+..
T Consensus 25 ~~L~~~~~~~---~~~~~ll~Gp~G~GKTt~a~~la~ 58 (224)
T d1sxjb2 25 DRLQQIAKDG---NMPHMIISGMPGIGKTTSVHCLAH 58 (224)
T ss_dssp HHHHHHHHSC---CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHcC---CCCeEEEECCCCCCchhhHHHHHH
Confidence 3444555433 223699999999999999998864
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.90 E-value=0.015 Score=51.31 Aligned_cols=22 Identities=41% Similarity=0.413 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
-+.++|++|+|||||++.+.+-
T Consensus 34 ~~~liGpsGaGKSTLl~~i~Gl 55 (239)
T d1v43a3 34 FLVLLGPSGCGKTTTLRMIAGL 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 5789999999999999998874
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.65 E-value=0.024 Score=47.35 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
.+++.|++|+||||+++.+...
T Consensus 35 ~lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 35 HMLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCChHHHHHHHHHH
Confidence 4899999999999999999753
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=93.61 E-value=0.017 Score=47.53 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=17.8
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy2970 23 LTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~ 42 (329)
|++.|+|||||||+.+.+..
T Consensus 6 I~I~GppGSGKgT~ak~La~ 25 (225)
T d1ckea_ 6 ITIDGPSGAGKGTLCKAMAE 25 (225)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67779999999999999965
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=93.61 E-value=0.015 Score=51.12 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
-+.++|++|+|||||++.+.+-
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~Gl 54 (240)
T d3dhwc1 33 IYGVIGASGAGKSTLIRCVNLL 54 (240)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5789999999999999999773
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=93.61 E-value=0.013 Score=50.98 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
-+.++|+.|+|||||++.+.+
T Consensus 27 i~~iiG~nGaGKSTLl~~l~G 47 (231)
T d1l7vc_ 27 ILHLVGPNGAGKSTLLARMAG 47 (231)
T ss_dssp EEECBCCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 578999999999999999987
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=93.58 E-value=0.045 Score=46.06 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~ 43 (329)
+++.|+||+|||++++.+...
T Consensus 49 l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHHH
Confidence 345699999999999999753
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=93.58 E-value=0.018 Score=50.76 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~ 44 (329)
-+.++|++|+|||||++.+.+-.
T Consensus 31 ~~~liG~sGaGKSTll~~i~gl~ 53 (240)
T d1g2912 31 FMILLGPSGCGKTTTLRMIAGLE 53 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58899999999999999998743
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=93.57 E-value=0.016 Score=50.71 Aligned_cols=23 Identities=39% Similarity=0.439 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~ 44 (329)
-+.++|+.|+|||||++.+.+-.
T Consensus 34 i~~liGpnGaGKSTl~~~i~Gl~ 56 (240)
T d1ji0a_ 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998743
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=93.37 E-value=0.013 Score=51.27 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~ 44 (329)
-+.++|++|+|||||++.+.+-.
T Consensus 28 ~~~liGpsGaGKSTll~~l~Gl~ 50 (229)
T d3d31a2 28 YFVILGPTGAGKTLFLELIAGFH 50 (229)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 47899999999999999998843
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=93.33 E-value=0.027 Score=49.54 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.-.+++.|+||+|||++++.+..
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~ 67 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHHH
Confidence 34599999999999999999975
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=93.26 E-value=0.02 Score=50.10 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~~ 44 (329)
-+.++|+.|+|||||++.+.+-.
T Consensus 30 i~glvG~nGaGKSTLl~~l~G~~ 52 (238)
T d1vpla_ 30 IFGLIGPNGAGKTTTLRIISTLI 52 (238)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46799999999999999998753
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=93.25 E-value=0.013 Score=52.06 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.=+++++|++|+|||||++-+.+
T Consensus 44 Ge~vaivG~sGsGKSTLl~ll~g 66 (255)
T d2hyda1 44 GETVAFVGMSGGGKSTLINLIPR 66 (255)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTT
T ss_pred CCEEEEECCCCCcHHHHHHHHHh
Confidence 34899999999999999998765
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=92.99 E-value=0.64 Score=37.94 Aligned_cols=71 Identities=10% Similarity=0.042 Sum_probs=39.7
Q ss_pred cceeEEEEECCCcccHHHHHHHHHHHHhCCcCCCCc-EEEEEEcCCCCCh-hhHHHHHHHhCCcEEEEeccchHHHHH
Q psy2970 130 FQLIKYMVDAADTDKLEASRNELHALIEKPQLIGIP-ILVLGNKRDLPNA-LDEKELIDRIMIDFWITLTLLIRWCES 205 (329)
Q Consensus 130 ~~~~~lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iP-IiLVgNK~Dl~~~-~e~~~l~~~~~~~~~etSAk~~~~~~~ 205 (329)
.+.+++|.+. +..++......+... +. .+.+ +-+|.||.+-... ...+++.+.++.+++-+=..+....++
T Consensus 132 ad~v~~v~~~-~~~~~~~~~~~~~~~-~~---~~~~~~~iv~N~~~~~~~~~~~~~i~~~~~~~~~~~IP~d~~~~~a 204 (232)
T d1hyqa_ 132 AQELLLVVNP-EISSITDGLKTKIVA-ER---LGTKVLGVVVNRITTLGIEMAKNEIEAILEAKVIGLIPEDPEVRRA 204 (232)
T ss_dssp SSEEEEEECS-SHHHHHHHHHHHHHH-HH---HTCEEEEEEEEEECTTTHHHHHHHHHHHTTSCEEEEEECCHHHHHH
T ss_pred hheeeeeccc-cccchhhhhhhhhhh-hh---cccccccccccccccccccchhhhHHhhcCCeEEEECCCCHHHHHH
Confidence 4445577665 344444444433322 22 2334 4478999986554 345667788888876554455554444
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.98 E-value=0.027 Score=44.75 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
.-=+++.|+||+|||+|..++..+-
T Consensus 23 G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 23 GSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3457889999999999999997643
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.91 E-value=0.024 Score=49.97 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
-+.++|+.|+|||||++.+.+-
T Consensus 32 i~~liG~nGaGKSTLl~~i~Gl 53 (254)
T d1g6ha_ 32 VTLIIGPNGSGKSTLINVITGF 53 (254)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHHCC
Confidence 4689999999999999999874
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=92.90 E-value=0.038 Score=45.02 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
|.++=|.|.|.+||||||+.+.|..
T Consensus 1 k~p~IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 1 KHPIIIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467788999999999999998865
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=92.89 E-value=0.024 Score=50.16 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
-+.++|++|+|||||++.+.+-
T Consensus 30 i~~iiG~sGsGKSTLl~~i~Gl 51 (258)
T d1b0ua_ 30 VISIIGSSGSGKSTFLRCINFL 51 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5889999999999999999763
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.88 E-value=0.041 Score=47.91 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.-.|++.|+||+|||++++++..
T Consensus 38 ~~giLL~GppGtGKT~l~~ala~ 60 (258)
T d1e32a2 38 PRGILLYGPPGTGKTLIARAVAN 60 (258)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CceeEEecCCCCCchHHHHHHHH
Confidence 34699999999999999999976
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=92.86 E-value=0.04 Score=48.02 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.-.|++.|+||+|||++++++..
T Consensus 42 ~~giLl~GppGtGKT~la~aia~ 64 (247)
T d1ixza_ 42 PKGVLLVGPPGVGKTHLARAVAG 64 (247)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEecCCCCChhHHHHHHHH
Confidence 34699999999999999999986
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=92.83 E-value=0.028 Score=52.57 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=23.7
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHH----HcCCCC
Q psy2970 16 FWKEEMELTLVGLQCSGKTTFVNVI----ASGQFS 46 (329)
Q Consensus 16 ~~~k~lkIlllG~~gvGKSSLin~l----~~~~~~ 46 (329)
.++.+-++++||+||||||+++..+ ..++.+
T Consensus 39 ~r~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp 73 (387)
T d1qvra2 39 LRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVP 73 (387)
T ss_dssp HCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSC
T ss_pred hcCCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCC
Confidence 3556778999999999999988554 455544
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.82 E-value=0.032 Score=47.35 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=22.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.++..-|.+.|.||||||||.+.|..
T Consensus 21 ~~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 21 NQRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45778899999999999999999864
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=92.45 E-value=0.016 Score=51.07 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy2970 22 ELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~~ 43 (329)
-+.++|++|+|||||++.+.+-
T Consensus 33 ~~~iiG~sGsGKSTll~~i~gl 54 (242)
T d1oxxk2 33 RFGILGPSGAGKTTFMRIIAGL 54 (242)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 6889999999999999999874
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.36 E-value=0.035 Score=45.50 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
+-|+|-|..||||||+++.|..
T Consensus 1 mlI~ieG~dGsGKST~~~~L~~ 22 (208)
T d1gsia_ 1 MLIAIEGVDGAGKRTLVEKLSG 22 (208)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999998864
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=92.04 E-value=0.076 Score=48.10 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=24.7
Q ss_pred HHHhcCCCCceEEEEEcCCCCCHHHHHHHHH
Q psy2970 11 WFKSLFWKEEMELTLVGLQCSGKTTFVNVIA 41 (329)
Q Consensus 11 ~~~~~~~~k~lkIlllG~~gvGKSSLin~l~ 41 (329)
++.....+..+=|.|.|++|||||||.+.+.
T Consensus 71 fl~~~~~k~P~iIGIaG~sgSGKSTla~~L~ 101 (308)
T d1sq5a_ 71 FLGTNGQRIPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp HHTCC-CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred HhcccCCCCCEEEEEeCCCCCCCcHHHHHHH
Confidence 3444446778999999999999999988875
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=91.89 E-value=0.065 Score=46.09 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 3 VLLNRILDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 3 ~~~~~~~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.|+..+..|++.. .|+-.+++.|++++|||.|+.++..
T Consensus 38 ~Fl~~l~~~l~~~--PKkn~i~~~GP~~TGKS~f~~sl~~ 75 (205)
T d1tuea_ 38 TFLGALKSFLKGT--PKKNCLVFCGPANTGKSYFGMSFIH 75 (205)
T ss_dssp HHHHHHHHHHHTC--TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC--CCceEEEEECCCCccHHHHHHHHHH
Confidence 4666777777543 5667899999999999999998865
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.86 E-value=0.058 Score=47.21 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
..-.|++.|++|+|||+|++++.+.
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~ 64 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANE 64 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcchhHHHHHHHH
Confidence 3456999999999999999999763
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=91.81 E-value=0.086 Score=48.59 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.+.-.+++.|+||+|||+|.+.+.+
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~ 176 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLE 176 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCeEEEECCCCCCHHHHHHHHHH
Confidence 3445799999999999999999875
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.65 E-value=0.11 Score=46.58 Aligned_cols=28 Identities=25% Similarity=0.013 Sum_probs=22.7
Q ss_pred hcCCCCceEEEEEcCCCCCHHHHHHHHH
Q psy2970 14 SLFWKEEMELTLVGLQCSGKTTFVNVIA 41 (329)
Q Consensus 14 ~~~~~k~lkIlllG~~gvGKSSLin~l~ 41 (329)
+...++.+=|.|-|.+|||||||...+.
T Consensus 21 ~~~~~~P~iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 21 ETGNKCPLFIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp TTTCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred hcCCCCCEEEEeECCCCCCHHHHHHHHH
Confidence 3345667889999999999999998763
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=91.64 E-value=0.2 Score=41.06 Aligned_cols=57 Identities=19% Similarity=0.153 Sum_probs=35.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCceeeeEEEeeCceEEEEEEecCC
Q psy2970 17 WKEEMELTLVGLQCSGKTTFVNVIASGQFS--QDMIPTVGFNMRKITKGNVTIKVWDIGG 74 (329)
Q Consensus 17 ~~k~lkIlllG~~gvGKSSLin~l~~~~~~--~~~~pTig~~~~~i~~~~~~l~I~DtpG 74 (329)
.++..-|++-|+-|+|||||++.+..+-.. .-..||... +.........+.=+|.--
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~l-~~~Y~~~~~~i~H~DlYR 88 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTL-VEEYNIAGKMIYHFDLYR 88 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTC-EEEEEETTEEEEEEECTT
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhcccccccCCCceEE-EEeeccCCceEEEEEEec
Confidence 345667889999999999999999864222 223455543 222333344454456543
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.63 E-value=0.042 Score=45.27 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.--++|.|+||+|||+|..++..+
T Consensus 34 G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 34 GSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp SSEEEEEESTTSSHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 345788999999999999999754
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=91.31 E-value=0.011 Score=46.76 Aligned_cols=18 Identities=33% Similarity=0.401 Sum_probs=16.2
Q ss_pred EEEcCCCCCHHHHHHHHH
Q psy2970 24 TLVGLQCSGKTTFVNVIA 41 (329)
Q Consensus 24 lllG~~gvGKSSLin~l~ 41 (329)
+|+|+.|+|||||+.++.
T Consensus 28 vi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 28 TLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp HHHSCCSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 567999999999999984
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=91.30 E-value=0.025 Score=50.62 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
-+|++.|+||+|||+|++++..
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~ 50 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAA 50 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHH
T ss_pred CeEEEECCCCccHHHHHHHHHH
Confidence 4799999999999999999853
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.23 E-value=0.052 Score=45.28 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
.-=++|.|+||+|||+|..++..+
T Consensus 36 G~~~li~G~pGsGKT~~~lq~~~~ 59 (254)
T d1pzna2 36 QAITEVFGEFGSGKTQLAHTLAVM 59 (254)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 345788999999999999999754
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.18 E-value=0.043 Score=52.12 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
+|+++||+|||||-|++++..
T Consensus 51 NILliGPTGvGKTlLAr~LAk 71 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAK 71 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999964
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=90.64 E-value=0.065 Score=43.91 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASGQ 44 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~~ 44 (329)
-=++|.|+||+|||+|..++..+-
T Consensus 35 ~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 35 SVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 357788999999999999997543
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.38 E-value=0.067 Score=44.33 Aligned_cols=20 Identities=40% Similarity=0.604 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy2970 23 LTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~ 42 (329)
|++-|..||||||+++.+..
T Consensus 5 IviEG~dGsGKsT~~~~L~~ 24 (210)
T d4tmka_ 5 IVIEGLEGAGKTTARNVVVE 24 (210)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78889999999999999864
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=90.09 E-value=0.077 Score=44.31 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
+.--+++.|+||+|||+|+.++..+
T Consensus 25 ~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 25 KDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4456788999999999999999765
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=89.85 E-value=0.11 Score=48.29 Aligned_cols=35 Identities=23% Similarity=0.194 Sum_probs=27.7
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 9 LDWFKSLFWKEEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 9 ~~~~~~~~~~k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
...++.+.....-=|++.|+.||||||.+..+...
T Consensus 147 ~~~l~~l~~~~~GliLvtGpTGSGKSTTl~~~l~~ 181 (401)
T d1p9ra_ 147 HDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQE 181 (401)
T ss_dssp HHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhceEEEEcCCCCCccHHHHHHhhh
Confidence 33455555566778999999999999999999863
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=89.78 E-value=0.092 Score=44.64 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
.+++.|++|+||||+++.+..
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~ 56 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAK 56 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 388999999999999998754
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.65 E-value=0.14 Score=45.97 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
-.++++|++|||||.|.+.+..
T Consensus 53 ~~~lf~Gp~GvGKT~lak~la~ 74 (315)
T d1r6bx3 53 GSFLFAGPTGVGKTEVTVQLSK 74 (315)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCcchhHHHHHHHHh
Confidence 3689999999999999999865
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=89.26 E-value=0.066 Score=46.37 Aligned_cols=17 Identities=35% Similarity=0.671 Sum_probs=15.9
Q ss_pred EEEcCCCCCHHHHHHHH
Q psy2970 24 TLVGLQCSGKTTFVNVI 40 (329)
Q Consensus 24 lllG~~gvGKSSLin~l 40 (329)
+++|+.|+||||++.++
T Consensus 28 vlvG~NgsGKS~iL~Ai 44 (308)
T d1e69a_ 28 AIVGPNGSGKSNIIDAI 44 (308)
T ss_dssp EEECCTTTCSTHHHHHH
T ss_pred EEECCCCCcHHHHHHHH
Confidence 68899999999999988
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.15 E-value=0.059 Score=44.83 Aligned_cols=21 Identities=33% Similarity=0.689 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
.|+|-|..||||||+++.|..
T Consensus 4 ~I~ieG~dGsGKST~~~~L~~ 24 (241)
T d1p5zb_ 4 KISIEGNIAAGKSTFVNILKQ 24 (241)
T ss_dssp EEEEECSTTSSHHHHHTTTGG
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488889999999999998865
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=89.14 E-value=0.14 Score=42.90 Aligned_cols=21 Identities=14% Similarity=0.321 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
-+++.|++|+||||+++.+..
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~ 46 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSR 46 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 499999999999999998765
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.85 E-value=0.11 Score=42.86 Aligned_cols=25 Identities=16% Similarity=0.116 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
+.--++|.|+||+|||+|..++..+
T Consensus 36 ~G~~~~i~G~~GsGKT~lalq~~~~ 60 (258)
T d1v5wa_ 36 SMAITEAFGEFRTGKTQLSHTLCVT 60 (258)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3446889999999999999999853
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=88.71 E-value=0.18 Score=43.07 Aligned_cols=62 Identities=10% Similarity=0.053 Sum_probs=36.2
Q ss_pred EEEECCCcccHHHHHHHHHHHHhCCcCCCCcEEEE--EEcCCCCCh------------hhHHHHHHHhCCcEEEEeccc
Q psy2970 135 YMVDAADTDKLEASRNELHALIEKPQLIGIPILVL--GNKRDLPNA------------LDEKELIDRIMIDFWITLTLL 199 (329)
Q Consensus 135 lV~Dvt~~~S~~~~~~~l~~i~~~~~~~~iPIiLV--gNK~Dl~~~------------~e~~~l~~~~~~~~~etSAk~ 199 (329)
+.+|.......+.+...+...... .++.+++| ++.++-... .++..++++++++.+-++-..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~ 197 (277)
T d1cr2a_ 122 HLYDSFAEAETDRLLAKLAYMRSG---LGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK 197 (277)
T ss_dssp EEECCC-CCCHHHHHHHHHHHHHT---TCCSEEEEEEEEC----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred eeeccccchhHHHHHHHhhhhhhc---cCcceEEEcccccccccccccchhHHHHHHHHHHHHHhhhccccceeecccc
Confidence 566665556666776666666543 34455553 344432211 347788899999998887665
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=88.57 E-value=0.12 Score=42.15 Aligned_cols=23 Identities=22% Similarity=0.169 Sum_probs=18.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.--++|.|+||+|||+|..++..
T Consensus 26 G~~~~I~G~~G~GKT~la~~~~~ 48 (242)
T d1tf7a1 26 GRSTLVSGTSGTGKTLFSIQFLY 48 (242)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 34577889999999999988754
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=88.20 E-value=0.13 Score=42.92 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQF 45 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~ 45 (329)
..-|++.|++|+||||+.-.+.....
T Consensus 14 g~gvl~~G~sG~GKStlal~l~~~g~ 39 (176)
T d1kkma_ 14 GLGVLITGDSGVGKSETALELVQRGH 39 (176)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHcCC
Confidence 45689999999999999999887543
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=88.04 E-value=0.15 Score=42.47 Aligned_cols=23 Identities=35% Similarity=0.312 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 21 MELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~~ 43 (329)
+-|.|.|..||||||+.+.|...
T Consensus 4 ~iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 4 YIVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEEECCCcCCHHHHHHHHHHC
Confidence 45779999999999999988643
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=87.95 E-value=0.11 Score=47.69 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.-+++++|++|||||-|.+++..
T Consensus 68 ~~niLfiGPTGvGKTElAk~LA~ 90 (364)
T d1um8a_ 68 KSNILLIGPTGSGKTLMAQTLAK 90 (364)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CcceeeeCCCCccHHHHHHHHHh
Confidence 35699999999999999999864
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=87.78 E-value=0.17 Score=41.83 Aligned_cols=22 Identities=36% Similarity=0.394 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
+-|.|.|..||||||+.+.|..
T Consensus 3 ~iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999998864
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=87.70 E-value=0.15 Score=42.62 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASGQF 45 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~~~ 45 (329)
..-|++.|++|+||||+...+.....
T Consensus 15 g~gvli~G~sG~GKS~lal~l~~~G~ 40 (177)
T d1knxa2 15 GVGVLLTGRSGIGKSECALDLINKNH 40 (177)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHTTTC
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHcCC
Confidence 45689999999999999999987543
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.57 E-value=0.16 Score=42.55 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
=|++-|..||||||+++.+..
T Consensus 5 lI~ieG~dGsGKsT~~~~L~~ 25 (209)
T d1nn5a_ 5 LIVLEGVDRAGKSTQSRKLVE 25 (209)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 377779999999998888754
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.20 E-value=0.15 Score=42.58 Aligned_cols=21 Identities=33% Similarity=0.608 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
=|+|=|.-||||||+++.+..
T Consensus 4 ~IviEG~~GsGKST~~~~L~~ 24 (241)
T d2ocpa1 4 RLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 377889999999999999975
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.67 E-value=0.15 Score=45.50 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=18.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIA 41 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~ 41 (329)
+.+.+ ++|+.|+|||+++.++.
T Consensus 25 ~~l~~-i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 25 SNFTS-IIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp CSEEE-EECSTTSSHHHHHHHHH
T ss_pred CCEEE-EECCCCCCHHHHHHHHH
Confidence 45644 77999999999999983
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=86.37 E-value=0.19 Score=41.62 Aligned_cols=27 Identities=11% Similarity=0.049 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCC
Q psy2970 19 EEMELTLVGLQCSGKTTFVNVIASGQF 45 (329)
Q Consensus 19 k~lkIlllG~~gvGKSSLin~l~~~~~ 45 (329)
...-|++.|++|+||||+.-.+.....
T Consensus 14 ~g~gvli~G~sg~GKS~la~~l~~~g~ 40 (169)
T d1ko7a2 14 YGVGVLITGDSGIGKSETALELIKRGH 40 (169)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHcCC
Confidence 345799999999999999999887643
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=85.87 E-value=0.19 Score=45.60 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=17.6
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy2970 23 LTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~ 42 (329)
+++.|+||+|||.|.+.+..
T Consensus 126 ~l~~G~pG~GKT~la~ala~ 145 (321)
T d1w44a_ 126 VIVTGKGNSGKTPLVHALGE 145 (321)
T ss_dssp EEEECSSSSCHHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHH
Confidence 55579999999999999975
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=85.73 E-value=0.23 Score=42.27 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=17.4
Q ss_pred CCceEEEEE-cCCCCCHHHHHHHH
Q psy2970 18 KEEMELTLV-GLQCSGKTTFVNVI 40 (329)
Q Consensus 18 ~k~lkIlll-G~~gvGKSSLin~l 40 (329)
+..-+|+++ |.+||||||+.-.+
T Consensus 17 ~~~~~iii~sGKGGVGKTT~a~nL 40 (279)
T d1ihua2 17 RNEHGLIMLMGKGGVGKTTMAAAI 40 (279)
T ss_dssp TTSCEEEEEECSTTSSHHHHHHHH
T ss_pred cCCCEEEEEECCCCCCHHHHHHHH
Confidence 445666665 99999999986655
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=85.65 E-value=0.21 Score=42.43 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
-.+|.|++|+|||+|+-++..
T Consensus 31 ~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 31 VGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 366899999999999988753
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=85.60 E-value=0.13 Score=46.17 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=17.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
+|..=|.|.|.+||||||+.++|..
T Consensus 2 ~k~pIIgIaG~SGSGKTTva~~l~~ 26 (288)
T d1a7ja_ 2 KKHPIISVTGSSGAGTSTVKHTFDQ 26 (288)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHH
Confidence 3444599999999999999998753
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=85.32 E-value=0.53 Score=41.21 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 18 KEEMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 18 ~k~lkIlllG~~gvGKSSLin~l~~ 42 (329)
.++--+.+.|+++.|||+|++.+..
T Consensus 102 ~k~n~~~l~G~~~tGKS~f~~~i~~ 126 (267)
T d1u0ja_ 102 GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEEEcCCCCCHHHHHHHHHH
Confidence 5677889999999999999999875
|
| >d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Probab=84.59 E-value=0.81 Score=36.94 Aligned_cols=56 Identities=18% Similarity=0.138 Sum_probs=44.8
Q ss_pred CCCcccHHHHHHHHHHHHhCCcCCCCcEEEEEEcCCCCCh-hhHHHHHHHhCCcEEEEec
Q psy2970 139 AADTDKLEASRNELHALIEKPQLIGIPILVLGNKRDLPNA-LDEKELIDRIMIDFWITLT 197 (329)
Q Consensus 139 vt~~~S~~~~~~~l~~i~~~~~~~~iPIiLVgNK~Dl~~~-~e~~~l~~~~~~~~~etSA 197 (329)
.+|+.+++...+...+++.. .+.|+|++|...+..+. .++.+++++.+++++.+..
T Consensus 2 ~sd~~~l~~~v~~~~~~l~~---AkrPvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~ 58 (175)
T d1zpda1 2 ASDEASLNAAVDETLKFIAN---RDKVAVLVGSKLRAAGAEEAAVKFTDALGGAVATMAA 58 (175)
T ss_dssp CCCHHHHHHHHHHHHHHHTT---CSCEEEEECTTTTTTTCHHHHHHHHHHHCCCEEEEGG
T ss_pred CCChHHHHHHHHHHHHHHHc---CCCEEEEECcCccccchHHHHHHHHHhhceeEEeccc
Confidence 35677777777777777664 67899999999988765 7799999999999987743
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=84.46 E-value=0.18 Score=43.11 Aligned_cols=16 Identities=25% Similarity=0.245 Sum_probs=13.6
Q ss_pred EEEEEcCCCCCHHHHH
Q psy2970 22 ELTLVGLQCSGKTTFV 37 (329)
Q Consensus 22 kIlllG~~gvGKSSLi 37 (329)
.++|+|.||+||||.+
T Consensus 16 ~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEEECCCTTSCHHHHH
T ss_pred CEEEEeeCCccHHHHH
Confidence 4789999999999754
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=83.99 E-value=0.23 Score=45.03 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
-+++|+|.+|+|||++++.+..
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~ 72 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAY 72 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCCcHHHHHHHHHH
Confidence 3599999999999999887764
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=83.54 E-value=0.23 Score=42.99 Aligned_cols=16 Identities=31% Similarity=0.349 Sum_probs=13.8
Q ss_pred EEEEEcCCCCCHHHHH
Q psy2970 22 ELTLVGLQCSGKTTFV 37 (329)
Q Consensus 22 kIlllG~~gvGKSSLi 37 (329)
.++|.|.+|+||||.+
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEecCCccHHHHH
Confidence 4889999999999754
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=83.36 E-value=0.29 Score=41.20 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy2970 23 LTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 23 IlllG~~gvGKSSLin~l~~~ 43 (329)
+.+.|++|+|||-|++++...
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~ 59 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNE 59 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999998753
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.20 E-value=0.29 Score=40.90 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy2970 21 MELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 21 lkIlllG~~gvGKSSLin~l~~ 42 (329)
.=|++=|.-||||||+++.+..
T Consensus 4 k~I~iEG~DGsGKST~~~~L~~ 25 (214)
T d1tmka_ 4 KLILIEGLDRTGKTTQCNILYK 25 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHH
Confidence 3488999999999999998864
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=83.09 E-value=0.36 Score=43.88 Aligned_cols=24 Identities=33% Similarity=0.332 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
-++|.|=|.-||||||+++.+...
T Consensus 6 ~~rI~iEG~iGsGKSTl~~~L~~~ 29 (333)
T d1p6xa_ 6 IVRIYLDGVYGIGKSTTGRVMASA 29 (333)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHSG
T ss_pred eEEEEEECCccCCHHHHHHHHHHH
Confidence 478999999999999999999763
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=81.69 E-value=0.69 Score=41.24 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
-++++|++|||||.+.+.+..
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~ 75 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAA 75 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHHH
Confidence 678889999999999998864
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=81.60 E-value=0.38 Score=40.05 Aligned_cols=21 Identities=38% Similarity=0.457 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy2970 22 ELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l~~ 42 (329)
-|.|.|..||||||+.+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 377889999999999999865
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=81.55 E-value=0.31 Score=44.24 Aligned_cols=24 Identities=25% Similarity=0.182 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIASG 43 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~~ 43 (329)
-++|.|=|.-||||||+++.+...
T Consensus 5 ~lrI~IEG~iGsGKSTl~~~L~~~ 28 (331)
T d1osna_ 5 VLRIYLDGAYGIGKTTAAEEFLHH 28 (331)
T ss_dssp EEEEEEEESSSSCTTHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999764
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=80.35 E-value=0.44 Score=40.48 Aligned_cols=19 Identities=26% Similarity=0.232 Sum_probs=15.7
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q psy2970 22 ELTLVGLQCSGKTTFVNVI 40 (329)
Q Consensus 22 kIlllG~~gvGKSSLin~l 40 (329)
=|++.|.+||||||+.-.+
T Consensus 10 ~i~~sGKGGVGKTTvaa~l 28 (296)
T d1ihua1 10 YLFFTGKGGVGKTSISCAT 28 (296)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCcChHHHHHHHH
Confidence 4567899999999977666
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=80.21 E-value=0.43 Score=43.32 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q psy2970 20 EMELTLVGLQCSGKTTFVNVIAS 42 (329)
Q Consensus 20 ~lkIlllG~~gvGKSSLin~l~~ 42 (329)
-++|.|=|.-||||||+++.+..
T Consensus 4 ~lrI~IEG~iGsGKTTl~~~La~ 26 (329)
T d1e2ka_ 4 LLRVYIDGPHGMGKTTTTQLLVA 26 (329)
T ss_dssp EEEEEECSCTTSSHHHHHHHHTC
T ss_pred ceEEEEECCcCCCHHHHHHHHHH
Confidence 36799999999999999999864
|