Psyllid ID: psy2979
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 400 | 2.2.26 [Sep-21-2011] | |||||||
| Q9JI74 | 751 | Kelch-like protein 1 OS=M | yes | N/A | 0.82 | 0.436 | 0.315 | 2e-45 | |
| Q9NR64 | 748 | Kelch-like protein 1 OS=H | yes | N/A | 0.82 | 0.438 | 0.312 | 4e-45 | |
| Q9UH77 | 587 | Kelch-like protein 3 OS=H | no | N/A | 0.857 | 0.584 | 0.346 | 4e-44 | |
| Q5REP9 | 587 | Kelch-like protein 3 OS=P | yes | N/A | 0.857 | 0.584 | 0.346 | 5e-44 | |
| F1MBP6 | 587 | Kelch-like protein 3 OS=B | no | N/A | 0.855 | 0.582 | 0.344 | 5e-44 | |
| E0CZ16 | 587 | Kelch-like protein 3 OS=M | no | N/A | 0.857 | 0.584 | 0.346 | 6e-44 | |
| Q5U374 | 564 | Kelch-like protein 12 OS= | no | N/A | 0.857 | 0.608 | 0.315 | 1e-43 | |
| F1LZ52 | 588 | Kelch-like protein 3 OS=R | yes | N/A | 0.84 | 0.571 | 0.343 | 1e-43 | |
| Q53G59 | 568 | Kelch-like protein 12 OS= | no | N/A | 0.842 | 0.593 | 0.325 | 3e-43 | |
| Q8BZM0 | 568 | Kelch-like protein 12 OS= | no | N/A | 0.84 | 0.591 | 0.325 | 4e-43 |
| >sp|Q9JI74|KLHL1_MOUSE Kelch-like protein 1 OS=Mus musculus GN=Klhl1 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 183 bits (464), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 111/352 (31%), Positives = 180/352 (51%), Gaps = 24/352 (6%)
Query: 45 VLETIRLPQLSPYFLHDCVEQCAIIKNNPQCAQLVEEAKLFHLLPDRRSAHITPRTKPRK 104
+L IRLP L P L D +E A+ KN+ +C +L+ EA +HLLP+RR+ +PRTKPRK
Sbjct: 400 LLAFIRLPLLPPQILAD-LENHALFKNDLECQKLILEAMKYHLLPERRTLMQSPRTKPRK 458
Query: 105 SAGSINVIIAVGGEDDKVVLRSVEGFCVKTKVW--------KTLSCLPFAISKHGLVVSG 156
S ++ + AVGG D+ ++E + ++T +W + L I V+ G
Sbjct: 459 S--TVGTLYAVGGMDNNKGATTIEKYDLRTNLWIQAGMMNGRRLQFGVAVIDDKLFVIGG 516
Query: 157 RNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSV 216
R+ + L+ V+ +L + + + G+ +L+G +YAVGG DG L++V
Sbjct: 517 RDGLKTLNTVECYNPKTKTWTVLPPMSTHRHGL---GVTVLEGPIYAVGGHDGWSYLNTV 573
Query: 217 ERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQW 275
ER+DP +W+Y+ M +A ++ V A G LY GG DG + ++ Y+P N+W
Sbjct: 574 ERWDPQSQQWTYVASMSIARSTVGVAALNGKLYSVGG---RDGSSCLSSMEYYDPHTNKW 630
Query: 276 QDLAPMLIPRSGAAICALDSCIYVLGGWHASTEN-----TNRVECYHIAENTWEYKSPMK 330
APM R G + D +Y +GG A N + VE Y +TW +P+
Sbjct: 631 SMCAPMCKRRGGVGVATCDGFLYAVGGHDAPASNHCSRLLDYVERYDPKTDTWTMVAPLS 690
Query: 331 EKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARS 382
R G+ ++ ++Y +GG +G Y +++E YD + W M+ L R+
Sbjct: 691 MPRDAVGVCLLGDRLYAVGGYDG-QTYLNTMESYDPQTNEWTQMASLNIGRA 741
|
May play a role in organizing the actin cytoskeleton of the brain cells. Mus musculus (taxid: 10090) |
| >sp|Q9NR64|KLHL1_HUMAN Kelch-like protein 1 OS=Homo sapiens GN=KLHL1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 182 bits (462), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 110/352 (31%), Positives = 180/352 (51%), Gaps = 24/352 (6%)
Query: 45 VLETIRLPQLSPYFLHDCVEQCAIIKNNPQCAQLVEEAKLFHLLPDRRSAHITPRTKPRK 104
+L IRLP L P L D +E A+ KN+ +C +L+ EA +HLLP+RR+ +PRTKPRK
Sbjct: 397 LLAFIRLPLLPPQILAD-LENHALFKNDLECQKLILEAMKYHLLPERRTLMQSPRTKPRK 455
Query: 105 SAGSINVIIAVGGEDDKVVLRSVEGFCVKTKVW--------KTLSCLPFAISKHGLVVSG 156
S ++ + AVGG D+ ++E + ++T +W + L I V+ G
Sbjct: 456 S--TVGTLYAVGGMDNNKGATTIEKYDLRTNLWIQAGMMNGRRLQFGVAVIDDKLFVIGG 513
Query: 157 RNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSV 216
R+ + L+ V+ +L + + + G+ +L+G +YAVGG DG L++V
Sbjct: 514 RDGLKTLNTVECYNPKTKTWTVLPPMSTHRHGL---GVTVLEGPIYAVGGHDGWSYLNTV 570
Query: 217 ERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQW 275
ER+DP +W+++ M +A ++ V A G LY GG DG + ++ Y+P N+W
Sbjct: 571 ERWDPQSQQWTFVASMSIARSTVGVAALNGKLYSVGG---RDGSSCLSSMEYYDPHTNKW 627
Query: 276 QDLAPMLIPRSGAAICALDSCIYVLGGWHASTEN-----TNRVECYHIAENTWEYKSPMK 330
APM R G + D +Y +GG A N + VE Y +TW +P+
Sbjct: 628 NMCAPMCKRRGGVGVATCDGFLYAVGGHDAPASNHCSRLLDYVERYDPKTDTWTMVAPLS 687
Query: 331 EKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARS 382
R G+ ++ ++Y +GG +G Y +++E YD + W M+ L R+
Sbjct: 688 MPRDAVGVCLLGDRLYAVGGYDG-QTYLNTMESYDPQTNEWTQMASLNIGRA 738
|
May play a role in organizing the actin cytoskeleton of the brain cells. Homo sapiens (taxid: 9606) |
| >sp|Q9UH77|KLHL3_HUMAN Kelch-like protein 3 OS=Homo sapiens GN=KLHL3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 179 bits (453), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 125/361 (34%), Positives = 180/361 (49%), Gaps = 18/361 (4%)
Query: 44 KVLETIRLPQLSPYFLHDCVEQCAIIKNNPQCAQLVEEAKLFHLLP-DRRSAHITPRTKP 102
K++E +RLP L +L VE+ A+IKNN C + EA +HLLP D+R PRTKP
Sbjct: 234 KLMEHVRLPLLPRDYLVQTVEEEALIKNNNTCKDFLIEAMKYHLLPLDQRLLIKNPRTKP 293
Query: 103 RKSAGSINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLV--------V 154
R V+I VGG+ K + RSVE + + W ++ LP + G+V V
Sbjct: 294 RTPVSLPKVMIVVGGQAPKAI-RSVECYDFEEDRWDQIAELPSRRCRAGVVFMAGHVYAV 352
Query: 155 SGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLD 214
G N + VD V + S+ S++ G A+L+ +YAVGG+DGS L
Sbjct: 353 GGFNGSLRVRTVD---VYDGVKDQWTSIASMQERRSTLGAAVLNDLLYAVGGFDGSTGLA 409
Query: 215 SVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ 274
SVE Y NEW ++ PM +S V EG LY GG + V++YNP N+
Sbjct: 410 SVEAYSYKTNEWFFVAPMNTRRSSVGVGVVEGKLYAVGGYDGASRQCLSTVEQYNPATNE 469
Query: 275 WQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRY 334
W +A M RSGA + L +Y GG H VE Y NTW+ + M R
Sbjct: 470 WIYVADMSTRRSGAGVGVLSGQLYATGG-HDGPLVRKSVEVYDPGTNTWKQVADMNMCRR 528
Query: 335 RPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIM-SHLPSARSWLGCVPLQIHK 393
G+ ++G +YV+GG++G S+E Y+ D W ++ +++ + RS+ G IHK
Sbjct: 529 NAGVCAVNGLLYVVGGDDGSCNLA-SVEYYNPVTDKWTLLPTNMSTGRSYAGVAV--IHK 585
Query: 394 S 394
S
Sbjct: 586 S 586
|
Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin ligase complex that acts as a regulator of ion transport in the distal nephron. The BCR(KLHL3) complex may act by mediating ubiquitination of SLC12A3/NCC, thereby regulating SLC12A3/NCC subcellular location at the cell membrane. Homo sapiens (taxid: 9606) |
| >sp|Q5REP9|KLHL3_PONAB Kelch-like protein 3 OS=Pongo abelii GN=KLHL3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 179 bits (453), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 125/361 (34%), Positives = 180/361 (49%), Gaps = 18/361 (4%)
Query: 44 KVLETIRLPQLSPYFLHDCVEQCAIIKNNPQCAQLVEEAKLFHLLP-DRRSAHITPRTKP 102
K++E +RLP L +L VE+ A+IKNN C + EA +HLLP D+R PRTKP
Sbjct: 234 KLMEHVRLPLLPRDYLVQTVEEEALIKNNNTCKDFLIEAMKYHLLPLDQRLLIKNPRTKP 293
Query: 103 RKSAGSINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLV--------V 154
R V+I VGG+ K + RSVE + + W ++ LP + G+V V
Sbjct: 294 RTPVSLPKVMIVVGGQAPKAI-RSVECYDFEEDRWDQIAELPSRRCRAGVVFMAGHVYAV 352
Query: 155 SGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLD 214
G N + VD V + S+ S++ G A+L+ +YAVGG+DGS L
Sbjct: 353 GGFNGSLRVRTVD---VYDGVKDQWTSIASMQERRSTLGAAVLNDLLYAVGGFDGSTGLA 409
Query: 215 SVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ 274
SVE Y NEW ++ PM +S V EG LY GG + V++YNP N+
Sbjct: 410 SVEAYSYKTNEWFFVAPMNTRRSSVGVGVVEGKLYAVGGYDGASRQCLSTVEQYNPATNE 469
Query: 275 WQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRY 334
W +A M RSGA + L +Y GG H VE Y NTW+ + M R
Sbjct: 470 WIYVADMSTRRSGAGVGVLSGQLYATGG-HDGPLVRKSVEVYDPGTNTWKQVADMNMCRR 528
Query: 335 RPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIM-SHLPSARSWLGCVPLQIHK 393
G+ ++G +YV+GG++G S+E Y+ D W ++ +++ + RS+ G IHK
Sbjct: 529 NAGVCAVNGLLYVVGGDDGSCNLA-SVEYYNPVTDKWTLLPTNMSTGRSYAGVAV--IHK 585
Query: 394 S 394
S
Sbjct: 586 S 586
|
Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin ligase complex that acts as a regulator of ion transport in the distal nephron. The BCR(KLHL3) complex may act by mediating ubiquitination of SLC12A3/NCC, thereby regulating SLC12A3/NCC subcellular location at the cell membrane. Pongo abelii (taxid: 9601) |
| >sp|F1MBP6|KLHL3_BOVIN Kelch-like protein 3 OS=Bos taurus GN=KLHL3 PE=3 SV=3 | Back alignment and function description |
|---|
Score = 178 bits (452), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 124/360 (34%), Positives = 179/360 (49%), Gaps = 18/360 (5%)
Query: 44 KVLETIRLPQLSPYFLHDCVEQCAIIKNNPQCAQLVEEAKLFHLLP-DRRSAHITPRTKP 102
K++E +RLP L +L VE+ A+IKNN C + EA +HLLP D+R PRTKP
Sbjct: 234 KLMEHVRLPLLPRDYLVQTVEEEALIKNNNTCKDFLIEAMKYHLLPLDQRLLIKNPRTKP 293
Query: 103 RKSAGSINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLV--------V 154
R V+I VGG+ K + RSVE + + W ++ LP + G+V V
Sbjct: 294 RTPVSLPKVMIVVGGQAPKAI-RSVECYDFEEDRWDQIAELPSRRCRAGVVFMAGHVYAV 352
Query: 155 SGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLD 214
G N + VD V + S+ S++ G A+L+ +YAVGG+DGS L
Sbjct: 353 GGFNGSLRVRTVD---VYDGVKDQWTSIASMQERRSTLGAAVLNDLLYAVGGFDGSTGLA 409
Query: 215 SVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ 274
SVE Y NEW ++ PM +S V EG LY GG + V++YNP N+
Sbjct: 410 SVEAYSYKTNEWFFVAPMNTRRSSVGVGVVEGKLYAVGGYDGASRQCLSTVEQYNPATNE 469
Query: 275 WQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRY 334
W +A M RSGA + L +Y GG H VE Y NTW+ + M R
Sbjct: 470 WTYVADMSTRRSGAGVGVLSGQLYATGG-HDGPLVRKSVEVYDPGTNTWKQVADMNMCRR 528
Query: 335 RPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIM-SHLPSARSWLGCVPLQIHK 393
G+ ++G +YV+GG++G S+E Y+ D W ++ +++ + RS+ G IHK
Sbjct: 529 NAGVCAVNGLLYVVGGDDGSCNLA-SVEYYNPVTDKWTLLPTNMSTGRSYAGVAV--IHK 585
|
Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin ligase complex that acts as a regulator of ion transport in the distal nephron. The BCR(KLHL3) complex may act by mediating ubiquitination of SLC12A3/NCC, thereby regulating SLC12A3/NCC subcellular location at the cell membrane. Bos taurus (taxid: 9913) |
| >sp|E0CZ16|KLHL3_MOUSE Kelch-like protein 3 OS=Mus musculus GN=Klhl3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 178 bits (452), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 125/361 (34%), Positives = 180/361 (49%), Gaps = 18/361 (4%)
Query: 44 KVLETIRLPQLSPYFLHDCVEQCAIIKNNPQCAQLVEEAKLFHLLP-DRRSAHITPRTKP 102
K++E +RLP L +L VE+ A+IKNN C + EA +HLLP D+R PRTKP
Sbjct: 234 KLMEHVRLPLLPRDYLVQTVEEEALIKNNNTCKDFLIEAMKYHLLPLDQRLLIKNPRTKP 293
Query: 103 RKSAGSINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLV--------V 154
R V+I VGG+ K + RSVE + + W ++ LP + G+V V
Sbjct: 294 RTPVSLPKVMIVVGGQAPKAI-RSVECYDFEEGRWDQIAELPSRRCRAGVVFMAGHVYAV 352
Query: 155 SGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLD 214
G N + VD V + S+ S++ G A+L+ +YAVGG+DGS L
Sbjct: 353 GGFNGSLRVRTVD---VYDGVKDQWTSIASMQERRSTLGAAVLNDLLYAVGGFDGSTGLA 409
Query: 215 SVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ 274
SVE Y NEW ++ PM +S V EG LY GG + V++YNP N+
Sbjct: 410 SVEAYSYKTNEWFFVAPMNTRRSSVGVGVVEGKLYAVGGYDGASRQCLSTVEQYNPATNE 469
Query: 275 WQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRY 334
W +A M RSGA + L +Y GG H VE Y NTW+ + M R
Sbjct: 470 WIYVADMSTRRSGAGVGVLSGQLYATGG-HDGPLVRKSVEVYDPGTNTWKQVADMNMCRR 528
Query: 335 RPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIM-SHLPSARSWLGCVPLQIHK 393
G+ ++G +YV+GG++G S+E Y+ D W ++ +++ + RS+ G IHK
Sbjct: 529 NAGVCAVNGLLYVVGGDDGSCNLA-SVEYYNPVTDKWTLLPTNMSTGRSYAGVAV--IHK 585
Query: 394 S 394
S
Sbjct: 586 S 586
|
Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin ligase complex that acts as a regulator of ion transport in the distal nephron. The BCR(KLHL3) complex may act by mediating ubiquitination of SLC12A3/NCC, thereby regulating SLC12A3/NCC subcellular location at the cell membrane. Mus musculus (taxid: 10090) |
| >sp|Q5U374|KLH12_DANRE Kelch-like protein 12 OS=Danio rerio GN=klhl12 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 114/361 (31%), Positives = 185/361 (51%), Gaps = 18/361 (4%)
Query: 41 PYF-KVLETIRLPQLSPYFLHDCVEQCAIIKNNPQCAQLVEEAKLFHLLPDRRSAHITPR 99
PY +LE +R+P L+P ++ D ++ +I+ + C LV+EAK FHL P+ RS +PR
Sbjct: 209 PYLPDLLEYVRMPLLTPRYITDVIDAEPLIRCSLPCRDLVDEAKKFHLRPELRSEMQSPR 268
Query: 100 TKPRKSAGSINVIIAVGG-EDDKVVLRSVEGFCVKTKVWKTLSCLP--------FAISKH 150
T+ R G+ V++ +GG + + VE + KT+ W L + A++
Sbjct: 269 TQAR--LGAKEVLLVIGGFGSQQSPIDIVEKYDPKTREWSFLPNIARKRRYVATVALNDR 326
Query: 151 GLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGS 210
V+ G + L V+ + A + +S+ ++ ++G L +Y GG+DGS
Sbjct: 327 VYVIGGYDGRSRLSSVECLDYTADEDGVWYSVATMNVRRGLAGATTLGDMIYVAGGFDGS 386
Query: 211 CRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGI-EQVQRYN 269
R S+ERYDP ++WS + M+ A +V G++Y GG DG I V+RY+
Sbjct: 387 RRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGLIYCLGGY---DGLNILNSVERYD 443
Query: 270 PKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPM 329
P W + PM RSGA + L+ IYV+GG+ T + + VE Y+I + W + M
Sbjct: 444 PHTGHWTSVTPMANKRSGAGVALLNDHIYVVGGFDG-TAHLSSVEVYNIRTDYWTTVANM 502
Query: 330 KEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPL 389
R G V+ G++Y + G +G + SIECYD DSWE+++ + + R G L
Sbjct: 503 TTPRCYVGATVLRGRLYAIAGYDG-NSLLSSIECYDPVIDSWEVVTSMATQRCDAGVCVL 561
Query: 390 Q 390
+
Sbjct: 562 R 562
|
Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin ligase complex that acts as a negative regulator of Wnt signaling pathway and ER-Golgi transport. The BCR(KLHL12) complex is involved in ER-Golgi transport by regulating the size of COPII coats, thereby playing a key role in collagen export, which is required for embryonic stem (ES) cells division (By similarity). Negatively regulates the Wnt signaling pathway, possibly via the targeted ubiquitination and subsequent proteolysis of dvl2 and dvl3. Regulates convergent-extension movements during early embryonic development. Danio rerio (taxid: 7955) |
| >sp|F1LZ52|KLHL3_RAT Kelch-like protein 3 OS=Rattus norvegicus GN=Klhl3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 177 bits (449), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 121/352 (34%), Positives = 176/352 (50%), Gaps = 16/352 (4%)
Query: 44 KVLETIRLPQLSPYFLHDCVEQCAIIKNNPQCAQLVEEAKLFHLLP-DRRSAHITPRTKP 102
K++E +RLP L +L VE+ A+IKNN C + EA +HLLP D+R PRTKP
Sbjct: 235 KLMEHVRLPLLPRDYLVQTVEEEALIKNNNTCKDFLIEAMKYHLLPLDQRLLIKNPRTKP 294
Query: 103 RKSAGSINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLV--------V 154
R V+I VGG+ K + RSVE + + W ++ LP + G+V V
Sbjct: 295 RTPVSLPKVMIVVGGQAPKAI-RSVECYDFEEGRWDQIAELPSRRCRAGVVFMAGHVYAV 353
Query: 155 SGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLD 214
G N + VD V + S+ S++ G A+L+ +YAVGG+DGS L
Sbjct: 354 GGFNGSLRVRTVD---VYDGVKDQWTSIASMQERRSTLGAAVLNDLLYAVGGFDGSTGLA 410
Query: 215 SVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ 274
SVE Y NEW ++ PM +S V EG LY GG + V++YNP N+
Sbjct: 411 SVEAYSYKTNEWFFVAPMNTRRSSVGVGVVEGKLYAVGGYDGASRQCLSTVEQYNPATNE 470
Query: 275 WQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRY 334
W +A M RSGA + L +Y GG H VE Y NTW+ + M R
Sbjct: 471 WIYVADMSTRRSGAGVGVLSGQLYATGG-HDGPLVRKSVEVYDPGTNTWKQVADMNMCRR 529
Query: 335 RPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIM-SHLPSARSWLG 385
G+ ++G +YV+GG++G S+E Y+ D W ++ +++ + RS+ G
Sbjct: 530 NAGVCAVNGLLYVVGGDDGSCNLA-SVEYYNPVTDKWTLLPTNMSTGRSYAG 580
|
Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin ligase complex that acts as a regulator of ion transport in the distal nephron. The BCR(KLHL3) complex may act by mediating ubiquitination of SLC12A3/NCC, thereby regulating SLC12A3/NCC subcellular location at the cell membrane. Rattus norvegicus (taxid: 10116) |
| >sp|Q53G59|KLH12_HUMAN Kelch-like protein 12 OS=Homo sapiens GN=KLHL12 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 176 bits (446), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 117/360 (32%), Positives = 184/360 (51%), Gaps = 23/360 (6%)
Query: 44 KVLETIRLPQLSPYFLHDCVEQCAIIKNNPQCAQLVEEAKLFHLLPDRRSAHITPRTKPR 103
+L+ +R+P L+P ++ D ++ I+ + QC LV+EAK FHL P+ RS PRT+ R
Sbjct: 217 NLLQYVRMPLLTPRYITDVIDAEPFIRCSLQCRDLVDEAKKFHLRPELRSQMQGPRTRAR 276
Query: 104 KSAGSINVIIAVGG-EDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLV--VSGRNTI 160
G+ V++ VGG + + VE + KT+ W S LP K V VS + I
Sbjct: 277 --LGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEW---SFLPSITRKRRYVASVSLHDRI 331
Query: 161 YC---------LDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSC 211
Y L V+ + A + +S+ + ++G L +Y GG+DGS
Sbjct: 332 YVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSR 391
Query: 212 RLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGI-EQVQRYNP 270
R S+ERYDP ++WS + M+ A +V G++Y GG DG I V++Y+P
Sbjct: 392 RHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGY---DGLNILNSVEKYDP 448
Query: 271 KVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMK 330
W ++ PM RSGA + L+ IYV+GG+ T + + VE Y+I ++W + M
Sbjct: 449 HTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDG-TAHLSSVEAYNIRTDSWTTVTSMT 507
Query: 331 EKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQ 390
R G V+ G++Y + G +G + SIECYD DSWE+++ + + R G L+
Sbjct: 508 TPRCYVGATVLRGRLYAIAGYDG-NSLLSSIECYDPIIDSWEVVTSMGTQRCDAGVCVLR 566
|
Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin ligase complex that acts as a negative regulator of Wnt signaling pathway and ER-Golgi transport. The BCR(KLHL12) complex is involved in ER-Golgi transport by regulating the size of COPII coats, thereby playing a key role in collagen export, which is required for embryonic stem (ES) cells division: BCR(KLHL12) acts by mediating monoubiquitination of SEC31 (SEC31A or SEC31B). As part of the BCR(KLHL12) complex, also acts as a negative regulator of the Wnt signaling pathway by mediating ubiquitination and subsequent proteolysis of DVL3. The BCR(KLHL12) complex also mediates polyubiquitination of DRD4, without leading to degradation of DRD4. Homo sapiens (taxid: 9606) |
| >sp|Q8BZM0|KLH12_MOUSE Kelch-like protein 12 OS=Mus musculus GN=Klhl12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 176 bits (445), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 117/359 (32%), Positives = 184/359 (51%), Gaps = 23/359 (6%)
Query: 45 VLETIRLPQLSPYFLHDCVEQCAIIKNNPQCAQLVEEAKLFHLLPDRRSAHITPRTKPRK 104
+L+ +R+P L+P ++ D ++ I+ + QC LV+EAK FHL P+ RS PRT+ R
Sbjct: 218 LLQYVRMPLLTPRYITDVIDAEPFIRCSLQCRDLVDEAKKFHLRPELRSQMQGPRTRAR- 276
Query: 105 SAGSINVIIAVGG-EDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLV--VSGRNTIY 161
G+ V++ VGG + + VE + KT+ W S LP K V VS + IY
Sbjct: 277 -LGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEW---SFLPSITRKRRYVASVSLHDRIY 332
Query: 162 C---------LDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCR 212
L V+ + A + +S+ + ++G L +Y GG+DGS R
Sbjct: 333 VIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRR 392
Query: 213 LDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGI-EQVQRYNPK 271
S+ERYDP ++WS + M+ A +V G++Y GG DG I V++Y+P
Sbjct: 393 HTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGIIYCLGGY---DGLNILNSVEKYDPH 449
Query: 272 VNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKE 331
W ++ PM RSGA + L+ IYV+GG+ T + + VE Y+I ++W + M
Sbjct: 450 TGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDG-TAHLSSVEAYNIRTDSWTTVTSMTT 508
Query: 332 KRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQ 390
R G V+ G++Y + G +G + SIECYD DSWE+++ + + R G L+
Sbjct: 509 PRCYVGATVLRGRLYAIAGYDG-NSLLSSIECYDPIIDSWEVVASMGTQRCDAGVCVLR 566
|
Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin ligase complex that acts as a negative regulator of Wnt signaling pathway and ER-Golgi transport. The BCR(KLHL12) complex is involved in ER-Golgi transport by regulating the size of COPII coats, thereby playing a key role in collagen export, which is required for embryonic stem (ES) cells division: BCR(KLHL12) acts by mediating monoubiquitination of SEC31 (SEC31A or SEC31B) (By similarity). As part of the BCR(KLHL12) complex, also acts as a negative regulator of the Wnt signaling pathway by mediating ubiquitination and subsequent proteolysis of DVL3. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 400 | ||||||
| 291221953 | 604 | PREDICTED: kelch-like protein 17-like [S | 0.877 | 0.581 | 0.573 | 1e-117 | |
| 326666291 | 627 | PREDICTED: kelch-like protein 20-like [D | 0.902 | 0.575 | 0.525 | 1e-109 | |
| 432869386 | 635 | PREDICTED: kelch-like protein 20-like [O | 0.875 | 0.551 | 0.547 | 1e-107 | |
| 405974080 | 569 | Kelch-like protein 20 [Crassostrea gigas | 0.847 | 0.595 | 0.543 | 1e-106 | |
| 241605980 | 627 | conserved hypothetical protein [Ixodes s | 0.877 | 0.559 | 0.475 | 3e-96 | |
| 260824003 | 523 | hypothetical protein BRAFLDRAFT_113584 [ | 0.687 | 0.525 | 0.563 | 2e-87 | |
| 47218014 | 629 | unnamed protein product [Tetraodon nigro | 0.902 | 0.573 | 0.421 | 1e-85 | |
| 410902394 | 571 | PREDICTED: kelch-like protein 20-like [T | 0.865 | 0.605 | 0.416 | 2e-80 | |
| 443689047 | 494 | hypothetical protein CAPTEDRAFT_3638 [Ca | 0.612 | 0.495 | 0.568 | 3e-79 | |
| 260821483 | 528 | hypothetical protein BRAFLDRAFT_92081 [B | 0.65 | 0.492 | 0.550 | 9e-79 |
| >gi|291221953|ref|XP_002730985.1| PREDICTED: kelch-like protein 17-like [Saccoglossus kowalevskii] | Back alignment and taxonomy information |
|---|
Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/361 (57%), Positives = 263/361 (72%), Gaps = 10/361 (2%)
Query: 42 YFK-VLETIRLPQLSPYFLHDCVEQCAIIKNNPQCAQLVEEAKLFHLLPDRRSAHITPRT 100
YF+ V IRLP +S YFLHD VE + ++ + C +LV+EAK + LL DRR +PRT
Sbjct: 231 YFEEVFTHIRLPLVSAYFLHDFVEVQSAVRQSEVCRKLVDEAKNYQLLQDRRGQLYSPRT 290
Query: 101 KPRKSAGSINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTI 160
+PR+S G+I VI+AVGGEDDKVVLRSVE + + WKTL+CLPFA+SKHGLVVSG N +
Sbjct: 291 RPRRSTGTIEVIVAVGGEDDKVVLRSVESYDPQKDQWKTLACLPFAVSKHGLVVSGNNFM 350
Query: 161 YCLD--------IVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCR 212
Y D+ S L + + G+A++DG ++AVGGW+GS R
Sbjct: 351 YMSGGEFPDGSASKDVWRYDPSFDHWLE-MAPMNVPRSELGLAIVDGSIFAVGGWEGSAR 409
Query: 213 LDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKV 272
L+SVE+YD N W ++ PMK+AVTSPAVVAHEG+LYVTGGA+LEDGDGI+ VQ YNPK
Sbjct: 410 LESVEKYDTWTNIWMFVSPMKIAVTSPAVVAHEGLLYVTGGAVLEDGDGIDLVQCYNPKT 469
Query: 273 NQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEK 332
++W++L+ MLIPRSG+A C L+ IY++GGWHASTENTN+VE Y +N WE K+PM E+
Sbjct: 470 DRWKELSAMLIPRSGSAACVLNDHIYIIGGWHASTENTNKVERYDPKKNEWEIKAPMHER 529
Query: 333 RYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQIH 392
RYRPG+AVIDGKIYVLGGEEGWD +HD+IECYD D WEI+ +PS+RSWL CV +Q
Sbjct: 530 RYRPGVAVIDGKIYVLGGEEGWDRHHDTIECYDESKDCWEIVGEMPSSRSWLSCVAMQTR 589
Query: 393 K 393
K
Sbjct: 590 K 590
|
Source: Saccoglossus kowalevskii Species: Saccoglossus kowalevskii Genus: Saccoglossus Family: Harrimaniidae Order: Class: Enteropneusta Phylum: Hemichordata Superkingdom: Eukaryota |
| >gi|326666291|ref|XP_003198234.1| PREDICTED: kelch-like protein 20-like [Danio rerio] | Back alignment and taxonomy information |
|---|
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/371 (52%), Positives = 256/371 (69%), Gaps = 10/371 (2%)
Query: 31 AHRVVLAASSPYFKVLETIRLPQLSPYFLHDCVEQCAIIKNNPQCAQLVEEAKLFHLLPD 90
+ R + + +VLE IRLP +SPY++HD +E ++K + QC +L+ EAK + LL D
Sbjct: 240 SRRQSFEKADVFLQVLEHIRLPLISPYYIHDVIETLDVVKESLQCQKLISEAKDYLLLQD 299
Query: 91 RRSAHITPRTKPRKSAGSINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKH 150
RR +PR +PR++ G+ VI+ VGGEDDKVVLRSVE F WK+L+CLPFA+SKH
Sbjct: 300 RRGELYSPRARPRRATGTAEVIVTVGGEDDKVVLRSVESFDPLNGQWKSLACLPFAVSKH 359
Query: 151 GLVVSGRNTIYCLDIVDIVYVAASMHKILH--------SLGSLKFDFDVSGIAMLDGFVY 202
GLVVSG ++ L + +AS + + + G+ MLDG+V+
Sbjct: 360 GLVVSG--SMLYLAGGEFPDGSASREMWRYDPCFDSWLEMAPMNVARSELGLVMLDGYVF 417
Query: 203 AVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGI 262
AVGGW+G RLDSVE Y+P N W ++E +K+AVTSPAVV+ +G+LYVTGGA+LEDGDG
Sbjct: 418 AVGGWEGRSRLDSVECYNPHTNTWQFMESVKMAVTSPAVVSLDGLLYVTGGAVLEDGDGT 477
Query: 263 EQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENT 322
+ Q YNPK W ++APM I RSG+A C L IYV+GGWHASTENT++VECY N
Sbjct: 478 DLAQVYNPKTCVWSEVAPMQIARSGSASCILKGKIYVIGGWHASTENTDKVECYDPKTNK 537
Query: 323 WEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARS 382
W +PMKE+RYRPG+AV+DGKIYVLGGEEGWD YHD+IE Y D+DSWEI+ +P++RS
Sbjct: 538 WTMCAPMKERRYRPGVAVVDGKIYVLGGEEGWDRYHDTIERYCEDSDSWEIVGEMPTSRS 597
Query: 383 WLGCVPLQIHK 393
WL CV L + K
Sbjct: 598 WLSCVSLHLRK 608
|
Source: Danio rerio Species: Danio rerio Genus: Danio Family: Cyprinidae Order: Cypriniformes Class: Actinopterygii Phylum: Chordata Superkingdom: Eukaryota |
| >gi|432869386|ref|XP_004071721.1| PREDICTED: kelch-like protein 20-like [Oryzias latipes] | Back alignment and taxonomy information |
|---|
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 197/360 (54%), Positives = 248/360 (68%), Gaps = 10/360 (2%)
Query: 42 YFKVLETIRLPQLSPYFLHDCVEQCAIIKNNPQCAQLVEEAKLFHLLPDRRSAHITPRTK 101
+ KVLE I LP +SPY+LHD +E ++K + C +L+ EAK + LL DRR R +
Sbjct: 264 FEKVLEHIHLPLISPYYLHDVIESLDVVKESQACQKLISEAKDYLLLKDRRGELYCSRAR 323
Query: 102 PRKSAGSINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIY 161
PR+S G+ VI+ VGGEDDKVVLRSVE F T WK L+CLPFA+SKHGLVVS +T+Y
Sbjct: 324 PRRSTGTAEVIVTVGGEDDKVVLRSVESFDPVTNQWKNLACLPFAVSKHGLVVSD-STLY 382
Query: 162 CLDIVDIVYVAASMHKILH--------SLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRL 213
L + +AS + + + G+ MLDGFVYAVGGW+G RL
Sbjct: 383 -LAGGEFPDGSASREMWRYDPCFDSWMEMAPMNVARSELGLVMLDGFVYAVGGWEGRSRL 441
Query: 214 DSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVN 273
DSVE Y+P N W + + +K+AVTSPAVVA +G+LYVTGGA+LEDGDG + Q YNPK
Sbjct: 442 DSVECYNPHTNSWQFTKSVKMAVTSPAVVALDGLLYVTGGAVLEDGDGTDLAQVYNPKTA 501
Query: 274 QWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKR 333
W ++APM I RSG+A C L IYV+GGWHASTENT++VECY+ N W +PMKE+R
Sbjct: 502 TWTEVAPMQIARSGSAACTLKGKIYVIGGWHASTENTDKVECYNPKTNQWTMCAPMKERR 561
Query: 334 YRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQIHK 393
YRPG AV+DGKIYVLGGEEGWD YHD+IE Y + D+WEI +P++RSWL CV LQ+ K
Sbjct: 562 YRPGAAVVDGKIYVLGGEEGWDRYHDTIERYCEEADTWEIGGEMPTSRSWLSCVSLQLRK 621
|
Source: Oryzias latipes Species: Oryzias latipes Genus: Oryzias Family: Adrianichthyidae Order: Beloniformes Class: Actinopterygii Phylum: Chordata Superkingdom: Eukaryota |
| >gi|405974080|gb|EKC38750.1| Kelch-like protein 20 [Crassostrea gigas] | Back alignment and taxonomy information |
|---|
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/372 (54%), Positives = 257/372 (69%), Gaps = 33/372 (8%)
Query: 42 YFKVLETIRLPQLSPYFLHDCVEQCAIIKNNPQCAQLVEEAKLFHLLPDRRSAHITPRTK 101
+ VLE +RLP ++PY+LHD VEQ +IK+ C +LV+EAK FHLLPDRR+ RT+
Sbjct: 197 FHHVLECVRLPMINPYYLHDFVEQNDVIKSCELCKKLVDEAKNFHLLPDRRTEFNNKRTR 256
Query: 102 PRKSAGSINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIY 161
RKSAG + V++AVGGEDDKVVLRSVE F T WK L+CLPFAISKHGLV G ++Y
Sbjct: 257 IRKSAGFVEVVVAVGGEDDKVVLRSVETFDPITLTWKPLACLPFAISKHGLVSVGGASLY 316
Query: 162 --------------------CLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFV 201
CLD D + S++ G+AMLDG++
Sbjct: 317 LAGGEYPDGNASRSVWRYDPCLDTWD-------------EMQSMQTPRSELGLAMLDGYM 363
Query: 202 YAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDG 261
YAVGGWDGS RLD+VE+Y+ N W + MK+A+TSPAV A +G L+VTGGA+LEDGDG
Sbjct: 364 YAVGGWDGSMRLDTVEQYNLYTNAWCLVSNMKMALTSPAVAAVDGCLFVTGGAVLEDGDG 423
Query: 262 IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAEN 321
IE VQ YNP+ + W + +PMLIPRSG+ C LD IY++GGWHASTENTN+VEC++ N
Sbjct: 424 IELVQCYNPRSDIWSEKSPMLIPRSGSGACVLDGMIYIIGGWHASTENTNKVECFNPRTN 483
Query: 322 TWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSAR 381
W K+ + E+RYRPG+AV+ GKIYV GGEEGWD YHD+IECYD ++DSWEI++ + S+R
Sbjct: 484 QWTQKASLSERRYRPGVAVVGGKIYVCGGEEGWDRYHDTIECYDPESDSWEIIAEMQSSR 543
Query: 382 SWLGCVPLQIHK 393
SWL CV + I K
Sbjct: 544 SWLSCVSMVIRK 555
|
Source: Crassostrea gigas Species: Crassostrea gigas Genus: Crassostrea Family: Ostreidae Order: Ostreoida Class: Bivalvia Phylum: Mollusca Superkingdom: Eukaryota |
| >gi|241605980|ref|XP_002405604.1| conserved hypothetical protein [Ixodes scapularis] gi|215500654|gb|EEC10148.1| conserved hypothetical protein [Ixodes scapularis] | Back alignment and taxonomy information |
|---|
Score = 358 bits (918), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 171/360 (47%), Positives = 235/360 (65%), Gaps = 9/360 (2%)
Query: 42 YFKVLETIRLPQLSPYFLHDCVEQCAIIKNNPQCAQLVEEAKLFHLLPDRRSAHITPRTK 101
+ ++LE +RLP +SPY+L+D V A+I +P+C +L+EEAK +HLLPDRR RT
Sbjct: 253 FERILEHVRLPLISPYYLNDSVATVAVISQSPKCRELLEEAKSYHLLPDRRRERHHQRTV 312
Query: 102 PRKSAGSINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIY 161
PR A V + VGGED+KVVLR+V+ + T W +L+ LPFA+SKHG+ +G N ++
Sbjct: 313 PRGQASMTEVAVLVGGEDEKVVLRNVDCYVFSTNSWLSLASLPFAVSKHGVAATGHNFLF 372
Query: 162 CL-------DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLD 214
+ + + + + L ++ G+A LDG VYAVGGWDGS RL
Sbjct: 373 MVGGEFPDGSVSKATWRFDPALNVWNELAPIETARSELGVATLDGLVYAVGGWDGSARLS 432
Query: 215 SVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ 274
VERYDP+ N W +E +K +T+PA+ + +G LYV GGA+L+DGDG++ VQ Y+PK +
Sbjct: 433 CVERYDPSSNFWETLESLKTPLTNPALASLDGRLYVVGGAVLDDGDGVDLVQCYDPKTDA 492
Query: 275 WQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRY 334
W LAPMLI RSGAA C + ++V+GGWHAS ENTN+VECY N+WE++ MKE+RY
Sbjct: 493 WTKLAPMLISRSGAAACVFNGRLFVIGGWHASYENTNKVECYDPKTNSWEFRKSMKERRY 552
Query: 335 RPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGC--VPLQIH 392
+PG AV+ +I V GGEE WD +H S+E YD + D W + +P RSWLGC V L IH
Sbjct: 553 KPGAAVVGRRILVFGGEESWDRHHVSMEAYDPEADRWCDVWDMPLKRSWLGCATVSLPIH 612
|
Source: Ixodes scapularis Species: Ixodes scapularis Genus: Ixodes Family: Ixodidae Order: Ixodida Class: Arachnida Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|260824003|ref|XP_002606957.1| hypothetical protein BRAFLDRAFT_113584 [Branchiostoma floridae] gi|229292303|gb|EEN62967.1| hypothetical protein BRAFLDRAFT_113584 [Branchiostoma floridae] | Back alignment and taxonomy information |
|---|
Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 159/282 (56%), Positives = 200/282 (70%), Gaps = 7/282 (2%)
Query: 42 YFKVLETIRLPQLSPYFLHDCVEQCAIIKNNPQCAQLVEEAKLFHLLPDRRSAHITPRTK 101
+ KVLE +RLP LSPY L DCV+ ++I+ + C +L+EEAK + LL DRR +PRT+
Sbjct: 242 FHKVLEQVRLPLLSPYHLLDCVDSHSVIQQSQPCRRLLEEAKSYQLLEDRRGEMFSPRTR 301
Query: 102 PRKSAGSINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIY 161
PR+S G++ VIIAVGGEDDKVVLRSVE + W+TL+CLPFA+SKHGLVVSG NT+Y
Sbjct: 302 PRRSTGTVEVIIAVGGEDDKVVLRSVESYDPTMGQWRTLACLPFAVSKHGLVVSGNNTLY 361
Query: 162 CL-------DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLD 214
++ + + + + G+AMLDGFVYAVGGW+GS RLD
Sbjct: 362 MSGGEFPDGSASKDMWKYDPIFDVWTEMAPMNVPRSELGLAMLDGFVYAVGGWEGSSRLD 421
Query: 215 SVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ 274
SVERY P N W+++ PMK+AVTSPA+VA+ G LYVTGGA+LEDGDGI+ VQ Y+PK
Sbjct: 422 SVERYSPATNSWAFVAPMKMAVTSPAMVAYNGKLYVTGGAVLEDGDGIDLVQCYDPKTKA 481
Query: 275 WQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECY 316
W +L PMLI RSG+A C L IYV+GGWHASTENTN+VE Y
Sbjct: 482 WMELQPMLIARSGSAACVLKGFIYVIGGWHASTENTNKVERY 523
|
Source: Branchiostoma floridae Species: Branchiostoma floridae Genus: Branchiostoma Family: Branchiostomidae Order: Class: Phylum: Chordata Superkingdom: Eukaryota |
| >gi|47218014|emb|CAG11419.1| unnamed protein product [Tetraodon nigroviridis] | Back alignment and taxonomy information |
|---|
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 200/475 (42%), Positives = 256/475 (53%), Gaps = 114/475 (24%)
Query: 1 MKMVLTGFNEARKNNEFCDVTLCVD------GSKF---PAHRVVLAAS-----------S 40
M+ +L F+ K EF ++LCVD S F +V A+
Sbjct: 177 MEYILEHFSGVHKQEEF--LSLCVDKLTEILASDFLNVSKEELVFEAAMLWLNKCPSRKQ 234
Query: 41 PYFKVLETIRLPQLSPYFLHDCVEQCAIIKNNPQCAQLVEEAKLFHLLPDRRSAHITPRT 100
+ KVLE IRLP +SPY+LHD +E ++K NP C +L+ EAK + LL + P++
Sbjct: 235 SFEKVLEHIRLPLISPYYLHDVIESLDVVKENPGCQKLISEAKDYLLLKGPSWRTVLPQS 294
Query: 101 KPRKSAGSINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTI 160
+ + + SVE F T WK L+CLPFA+SKHGLVVS +T+
Sbjct: 295 EAAQ-------------------IHSVESFDPVTNQWKNLACLPFAVSKHGLVVSD-STL 334
Query: 161 Y--------------------CLDI------VDIVY------VAASMHKI--LHSLGSLK 186
Y C D +++ ++A H+I + S GS K
Sbjct: 335 YLAGGEFPDGSASREMWRYDPCFDSWTEMAPMNVARSELGEELSAPEHRIENIISDGSQK 394
Query: 187 F-----------DFDV--SGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMK 233
DF V +G+ MLDGFVYAVGGW+G RLDSVE Y+P N W + E K
Sbjct: 395 LIPHSLAVRNPEDFPVLSAGLVMLDGFVYAVGGWEGRSRLDSVECYNPHTNLWQFTESYK 454
Query: 234 LAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL 293
+AVTSPAVVA +G+LYVTGGA+LEDGDG Q YNPK W +LAPM I RSG+A C L
Sbjct: 455 MAVTSPAVVALDGLLYVTGGAVLEDGDGTALAQVYNPKSGAWTELAPMQIARSGSAACTL 514
Query: 294 DSCIYVL-------------------------GGWHASTENTNRVECYHIAENTWEYKSP 328
IYV+ GGWHASTENT++VECY N W +P
Sbjct: 515 KGKIYVIGEYCAHTEGPIKGAKVMKNGVFAFTGGWHASTENTDKVECYDPKTNKWTMCAP 574
Query: 329 MKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSW 383
MKE+RYRPG AV+DGKIYVLGGEEGWD YHD+IE Y D+D+WEI+ L ++RSW
Sbjct: 575 MKERRYRPGAAVVDGKIYVLGGEEGWDRYHDTIERYCEDSDTWEIIGELYTSRSW 629
|
Source: Tetraodon nigroviridis Species: Tetraodon nigroviridis Genus: Tetraodon Family: Tetraodontidae Order: Tetraodontiformes Class: Actinopterygii Phylum: Chordata Superkingdom: Eukaryota |
| >gi|410902394|ref|XP_003964679.1| PREDICTED: kelch-like protein 20-like [Takifugu rubripes] | Back alignment and taxonomy information |
|---|
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 173/415 (41%), Positives = 226/415 (54%), Gaps = 69/415 (16%)
Query: 1 MKMVLTGFNEARKNNEFCDVTLCVD------GSKF---PAHRVVLAAS-----------S 40
M+ +L F K EF ++LCVD S F +V A+
Sbjct: 190 MEYILEHFGGVHKQEEF--LSLCVDKLTEILASDFLNASKEEMVFEAAMLWLNKCPSRKQ 247
Query: 41 PYFKVLETIRLPQLSPYFLHDCVEQCAIIKNNPQCAQLVEEAKLFHLLPDRRSAHITPRT 100
+ KVLE IRLP +SPY+LHD +E ++K NP C +L+ EAK + LL DRR PR
Sbjct: 248 SFEKVLEHIRLPLISPYYLHDVIESLDVVKENPGCQKLISEAKDYLLLKDRRGELYCPRA 307
Query: 101 KPRKSAGSINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTI 160
+PR+S + VI+ VGGEDDKVVLRSVE F T WK L+CLPFA+SKH
Sbjct: 308 RPRRSTATAEVIVTVGGEDDKVVLRSVESFNPVTNQWKNLACLPFAVSKH---------- 357
Query: 161 YCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGW--DGSCRLDSVER 218
G+ + D +Y GG DGS + + R
Sbjct: 358 --------------------------------GLVVSDSTLYLAGGEFPDGSASRE-MWR 384
Query: 219 YDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDL 278
YDP + W+ + PM +A + +V +G +Y GG E ++ V+ YNP N WQ
Sbjct: 385 YDPCFDSWTEMAPMNVARSELGLVMLDGFVYAVGG--WEGRSRLDSVECYNPHTNLWQFT 442
Query: 279 APMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGI 338
+ + A+ ALD +YV GGWHASTENT++VECY N W +PMKE+RYRPG
Sbjct: 443 ESYKMAVTSPAVVALDGLLYVTGGWHASTENTDKVECYDPITNQWTMCAPMKERRYRPGA 502
Query: 339 AVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQIHK 393
AV+DGKIYVLGGEEGWD YHD+IE Y D D+WEI+S + ++RSWL CV LQ+ K
Sbjct: 503 AVVDGKIYVLGGEEGWDRYHDTIERYCEDTDTWEIVSEMTTSRSWLSCVSLQLRK 557
|
Source: Takifugu rubripes Species: Takifugu rubripes Genus: Takifugu Family: Tetraodontidae Order: Tetraodontiformes Class: Actinopterygii Phylum: Chordata Superkingdom: Eukaryota |
| >gi|443689047|gb|ELT91551.1| hypothetical protein CAPTEDRAFT_3638 [Capitella teleta] | Back alignment and taxonomy information |
|---|
Score = 301 bits (772), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 149/262 (56%), Positives = 187/262 (71%), Gaps = 17/262 (6%)
Query: 44 KVLETIRLPQLSPYFLHDCVEQCAIIKNNPQCAQLVEEAKLFHLLPDRRSAHITPRTKPR 103
+V+E +RL LSPYFLHDCV+ +I +C +L++EA +HLL DRR TPR++PR
Sbjct: 227 QVMEHVRLSLLSPYFLHDCVDDHPVIGKLAKCQELIKEANTYHLLKDRRHELRTPRSRPR 286
Query: 104 KSAGSINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIY-- 161
S G++ VIIAVGGEDDKVVLRSVE F TK WKTL+CLPFA+SKHGLVV+ +++
Sbjct: 287 LSTGTMEVIIAVGGEDDKVVLRSVESFDPITKHWKTLACLPFAVSKHGLVVNASRSMWRY 346
Query: 162 --CLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERY 219
C D + S+ G+AMLDGF++AVGGW+GS RLDS+ERY
Sbjct: 347 DPCFDC-------------WQEMASMILPRSELGLAMLDGFIFAVGGWEGSSRLDSIERY 393
Query: 220 DPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLA 279
DPT N WS + PMK+AVTSPAVVAHEG+LYVTGGA+LEDGDGI+ VQ +NP+ N W +L
Sbjct: 394 DPTTNHWSMVAPMKMAVTSPAVVAHEGLLYVTGGAVLEDGDGIDLVQCFNPRNNHWMELP 453
Query: 280 PMLIPRSGAAICALDSCIYVLG 301
M I RSG+A CAL+S IYV+G
Sbjct: 454 RMKIARSGSAACALNSVIYVIG 475
|
Source: Capitella teleta Species: Capitella teleta Genus: Capitella Family: Capitellidae Order: Capitellida Class: Polychaeta Phylum: Annelida Superkingdom: Eukaryota |
| >gi|260821483|ref|XP_002606062.1| hypothetical protein BRAFLDRAFT_92081 [Branchiostoma floridae] gi|229291400|gb|EEN62072.1| hypothetical protein BRAFLDRAFT_92081 [Branchiostoma floridae] | Back alignment and taxonomy information |
|---|
Score = 300 bits (768), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 148/269 (55%), Positives = 189/269 (70%), Gaps = 9/269 (3%)
Query: 42 YFKVLETIRLPQLSPYFLHDCVEQCAIIKNNPQCAQLVEEAKLFHLLPDRRSAHITPRTK 101
+ KVLE +RLP LSPY L DCV+ ++I+ + C +L+EEAK + LL DRR +PRT+
Sbjct: 242 FHKVLEQVRLPLLSPYHLLDCVDSHSVIQQSQPCRRLLEEAKSYQLLEDRRGEMFSPRTR 301
Query: 102 PRKSAGSINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIY 161
PR+S G++ VIIAVGGEDDKVVLRSVE + W+TL+CLPFA+SKHGLVVSG NT+Y
Sbjct: 302 PRRSTGTVEVIIAVGGEDDKVVLRSVESYDPTMGQWRTLACLPFAVSKHGLVVSGNNTLY 361
Query: 162 CLDIVDIVYVAAS--------MHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRL 213
+ + +AS + + + + G+AMLDGFVYAVGGW+GS RL
Sbjct: 362 -MSGGEFPDGSASKDMWKYDPIFDVWTEMAPMNVPRSELGLAMLDGFVYAVGGWEGSSRL 420
Query: 214 DSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVN 273
DSVERY P N W+++ PMK+AVTSPA+VA+ G LYVTGGA+LEDGDGI+ VQ Y+PK
Sbjct: 421 DSVERYSPATNSWAFVAPMKMAVTSPAMVAYNGKLYVTGGAVLEDGDGIDLVQCYDPKTK 480
Query: 274 QWQDLAPMLIPRSGAAICALDSCIYVLGG 302
W +L PMLI RSG+A C L IYV+G
Sbjct: 481 AWMELQPMLIARSGSAACVLKGFIYVIGA 509
|
Source: Branchiostoma floridae Species: Branchiostoma floridae Genus: Branchiostoma Family: Branchiostomidae Order: Class: Phylum: Chordata Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 400 | ||||||
| ZFIN|ZDB-GENE-041114-205 | 564 | klhl12 "kelch-like 12 (Drosoph | 0.85 | 0.602 | 0.320 | 4.8e-56 | |
| MGI|MGI:2385619 | 568 | Klhl12 "kelch-like 12" [Mus mu | 0.84 | 0.591 | 0.322 | 3.3e-55 | |
| UNIPROTKB|Q53G59 | 568 | KLHL12 "Kelch-like protein 12" | 0.84 | 0.591 | 0.322 | 3.3e-55 | |
| UNIPROTKB|F1S4N0 | 606 | KLHL12 "Uncharacterized protei | 0.84 | 0.554 | 0.322 | 3.3e-55 | |
| RGD|628717 | 568 | Klhl12 "kelch-like family memb | 0.84 | 0.591 | 0.322 | 4.2e-55 | |
| UNIPROTKB|Q6NRH0 | 564 | klhl12 "Kelch-like protein 12" | 0.842 | 0.597 | 0.307 | 6.9e-53 | |
| UNIPROTKB|F1NXJ5 | 582 | KLHL3 "Uncharacterized protein | 0.86 | 0.591 | 0.343 | 2.3e-52 | |
| UNIPROTKB|B4GRJ2 | 628 | dbo "Kelch-like protein diablo | 0.802 | 0.511 | 0.343 | 6.1e-52 | |
| UNIPROTKB|Q2M0J9 | 628 | dbo "Kelch-like protein diablo | 0.802 | 0.511 | 0.343 | 6.1e-52 | |
| UNIPROTKB|E1B932 | 568 | KLHL12 "Kelch-like protein 12" | 0.847 | 0.596 | 0.306 | 6.1e-52 |
| ZFIN|ZDB-GENE-041114-205 klhl12 "kelch-like 12 (Drosophila)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 458 (166.3 bits), Expect = 4.8e-56, Sum P(2) = 4.8e-56
Identities = 115/359 (32%), Positives = 185/359 (51%)
Query: 41 PYFK-VLETIRLPQLSPYFLHDCVEQCAIIKNNPQCAQLVEEAKLFHLLPDRRSAHITPR 99
PY +LE +R+P L+P ++ D ++ +I+ + C LV+EAK FHL P+ RS +PR
Sbjct: 209 PYLPDLLEYVRMPLLTPRYITDVIDAEPLIRCSLPCRDLVDEAKKFHLRPELRSEMQSPR 268
Query: 100 TKPRKSAGSINVIIAVGG-EDDKVVLRSVEGFCVKTKVWKTLSCLP--------FAISKH 150
T+ R G+ V++ +GG + + VE + KT+ W L + A++
Sbjct: 269 TQAR--LGAKEVLLVIGGFGSQQSPIDIVEKYDPKTREWSFLPNIARKRRYVATVALNDR 326
Query: 151 GLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGS 210
V+ G + L V+ + A + +S+ ++ ++G L +Y GG+DGS
Sbjct: 327 VYVIGGYDGRSRLSSVECLDYTADEDGVWYSVATMNVRRGLAGATTLGDMIYVAGGFDGS 386
Query: 211 CRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGI-EQVQRYN 269
R S+ERYDP ++WS + M+ A +V G++Y GG DG I V+RY+
Sbjct: 387 RRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGLIYCLGGY---DGLNILNSVERYD 443
Query: 270 PKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPM 329
P W + PM RSGA + L+ IYV+GG+ T + + VE Y+I + W + M
Sbjct: 444 PHTGHWTSVTPMANKRSGAGVALLNDHIYVVGGFDG-TAHLSSVEVYNIRTDYWTTVANM 502
Query: 330 KEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLG-CV 387
R G V+ G++Y + G +G + SIECYD DSWE+++ + + R G CV
Sbjct: 503 TTPRCYVGATVLRGRLYAIAGYDG-NSLLSSIECYDPVIDSWEVVTSMATQRCDAGVCV 560
|
|
| MGI|MGI:2385619 Klhl12 "kelch-like 12" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 456 (165.6 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
Identities = 114/354 (32%), Positives = 184/354 (51%)
Query: 45 VLETIRLPQLSPYFLHDCVEQCAIIKNNPQCAQLVEEAKLFHLLPDRRSAHITPRTKPRK 104
+L+ +R+P L+P ++ D ++ I+ + QC LV+EAK FHL P+ RS PRT+ R
Sbjct: 218 LLQYVRMPLLTPRYITDVIDAEPFIRCSLQCRDLVDEAKKFHLRPELRSQMQGPRTRAR- 276
Query: 105 SAGSINVIIAVGG-EDDKVVLRSVEGFCVKTKVWKTLSCLP------FAISKHG--LVVS 155
G+ V++ VGG + + VE + KT+ W L + ++S H V+
Sbjct: 277 -LGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIG 335
Query: 156 GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDS 215
G + L V+ + A + +S+ + ++G L +Y GG+DGS R S
Sbjct: 336 GYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTS 395
Query: 216 VERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGI-EQVQRYNPKVNQ 274
+ERYDP ++WS + M+ A +V G++Y GG DG I V++Y+P
Sbjct: 396 MERYDPNIDQWSMLGDMQTAREGAGLVVASGIIYCLGGY---DGLNILNSVEKYDPHTGH 452
Query: 275 WQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRY 334
W ++ PM RSGA + L+ IYV+GG+ T + + VE Y+I ++W + M R
Sbjct: 453 WTNVTPMATKRSGAGVALLNDHIYVVGGFDG-TAHLSSVEAYNIRTDSWTTVTSMTTPRC 511
Query: 335 RPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLG-CV 387
G V+ G++Y + G +G + SIECYD DSWE+++ + + R G CV
Sbjct: 512 YVGATVLRGRLYAIAGYDG-NSLLSSIECYDPIIDSWEVVASMGTQRCDAGVCV 564
|
|
| UNIPROTKB|Q53G59 KLHL12 "Kelch-like protein 12" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 456 (165.6 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
Identities = 114/354 (32%), Positives = 184/354 (51%)
Query: 45 VLETIRLPQLSPYFLHDCVEQCAIIKNNPQCAQLVEEAKLFHLLPDRRSAHITPRTKPRK 104
+L+ +R+P L+P ++ D ++ I+ + QC LV+EAK FHL P+ RS PRT+ R
Sbjct: 218 LLQYVRMPLLTPRYITDVIDAEPFIRCSLQCRDLVDEAKKFHLRPELRSQMQGPRTRAR- 276
Query: 105 SAGSINVIIAVGG-EDDKVVLRSVEGFCVKTKVWKTLSCLP------FAISKHG--LVVS 155
G+ V++ VGG + + VE + KT+ W L + ++S H V+
Sbjct: 277 -LGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIG 335
Query: 156 GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDS 215
G + L V+ + A + +S+ + ++G L +Y GG+DGS R S
Sbjct: 336 GYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTS 395
Query: 216 VERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGI-EQVQRYNPKVNQ 274
+ERYDP ++WS + M+ A +V G++Y GG DG I V++Y+P
Sbjct: 396 MERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGY---DGLNILNSVEKYDPHTGH 452
Query: 275 WQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRY 334
W ++ PM RSGA + L+ IYV+GG+ T + + VE Y+I ++W + M R
Sbjct: 453 WTNVTPMATKRSGAGVALLNDHIYVVGGFDG-TAHLSSVEAYNIRTDSWTTVTSMTTPRC 511
Query: 335 RPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLG-CV 387
G V+ G++Y + G +G + SIECYD DSWE+++ + + R G CV
Sbjct: 512 YVGATVLRGRLYAIAGYDG-NSLLSSIECYDPIIDSWEVVTSMGTQRCDAGVCV 564
|
|
| UNIPROTKB|F1S4N0 KLHL12 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 456 (165.6 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
Identities = 114/354 (32%), Positives = 184/354 (51%)
Query: 45 VLETIRLPQLSPYFLHDCVEQCAIIKNNPQCAQLVEEAKLFHLLPDRRSAHITPRTKPRK 104
+L+ +R+P L+P ++ D ++ I+ + QC LV+EAK FHL P+ RS PRT+ R
Sbjct: 256 LLQYVRMPLLTPRYITDVIDAEPFIRCSLQCRDLVDEAKKFHLRPELRSQMQGPRTRAR- 314
Query: 105 SAGSINVIIAVGG-EDDKVVLRSVEGFCVKTKVWKTLSCLP------FAISKHG--LVVS 155
G+ V++ VGG + + VE + KT+ W L + ++S H V+
Sbjct: 315 -LGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIG 373
Query: 156 GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDS 215
G + L V+ + A + +S+ + ++G L +Y GG+DGS R S
Sbjct: 374 GYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTS 433
Query: 216 VERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGI-EQVQRYNPKVNQ 274
+ERYDP ++WS + M+ A +V G++Y GG DG I V++Y+P
Sbjct: 434 MERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGY---DGLNILNSVEKYDPHTGH 490
Query: 275 WQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRY 334
W ++ PM RSGA + L+ IYV+GG+ T + + VE Y+I ++W + M R
Sbjct: 491 WTNVTPMATKRSGAGVALLNDHIYVVGGFDG-TAHLSSVEAYNIRTDSWTTVTSMTTPRC 549
Query: 335 RPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLG-CV 387
G V+ G++Y + G +G + SIECYD DSWE+++ + + R G CV
Sbjct: 550 YVGATVLRGRLYAIAGYDG-NSLLSSIECYDPIIDSWEVVTSMGTQRCDAGVCV 602
|
|
| RGD|628717 Klhl12 "kelch-like family member 12" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 455 (165.2 bits), Expect = 4.2e-55, Sum P(2) = 4.2e-55
Identities = 114/354 (32%), Positives = 183/354 (51%)
Query: 45 VLETIRLPQLSPYFLHDCVEQCAIIKNNPQCAQLVEEAKLFHLLPDRRSAHITPRTKPRK 104
+L+ +R+P L+P ++ D ++ I+ + QC LV+EAK FHL P+ RS PRT+ R
Sbjct: 218 LLQYVRMPLLTPRYITDVIDAEPFIRCSLQCRDLVDEAKKFHLRPELRSQMQGPRTRAR- 276
Query: 105 SAGSINVIIAVGG-EDDKVVLRSVEGFCVKTKVWKTLSCLP------FAISKHG--LVVS 155
G V++ VGG + + VE + KT+ W L + ++S H V+
Sbjct: 277 -LGDNEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIG 335
Query: 156 GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDS 215
G + L V+ + A + +S+ + ++G L +Y GG+DGS R S
Sbjct: 336 GYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTS 395
Query: 216 VERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGI-EQVQRYNPKVNQ 274
+ERYDP ++WS + M+ A +V G++Y GG DG I V++Y+P
Sbjct: 396 MERYDPNIDQWSMLGDMQTAREGAGLVVASGIIYCLGGY---DGLNILNSVEKYDPHTGH 452
Query: 275 WQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRY 334
W ++ PM RSGA + L+ IYV+GG+ T + + VE Y+I ++W + M R
Sbjct: 453 WTNVTPMATKRSGAGVALLNDHIYVVGGFDG-TAHLSSVEAYNIRTDSWTTVTSMTTPRC 511
Query: 335 RPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLG-CV 387
G V+ G++Y + G +G + SIECYD DSWE+++ + + R G CV
Sbjct: 512 YVGATVLRGRLYAIAGYDG-NSLLSSIECYDPIIDSWEVVASMGTQRCDAGVCV 564
|
|
| UNIPROTKB|Q6NRH0 klhl12 "Kelch-like protein 12" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 446 (162.1 bits), Expect = 6.9e-53, Sum P(2) = 6.9e-53
Identities = 109/355 (30%), Positives = 183/355 (51%)
Query: 44 KVLETIRLPQLSPYFLHDCVEQCAIIKNNPQCAQLVEEAKLFHLLPDRRSAHITPRTKPR 103
++L+ +R+P L+P ++ D ++ +I+ + QC LV+EAK FHL P+ RS PRT+ R
Sbjct: 213 QLLQYVRMPLLTPRYITDVIDAEPLIRCSLQCRDLVDEAKKFHLRPELRSQMQGPRTRVR 272
Query: 104 KSAGSINVIIAVGG-EDDKVVLRSVEGFCVKTKVWKTLSCLP--------FAISKHGLVV 154
G+ V++ +GG + + VE + KT+ W L + ++ V+
Sbjct: 273 --LGANEVLLVIGGFGSQQSPIDIVEKYDPKTQEWSVLPSITRKRRYVATVSLGDRVYVI 330
Query: 155 SGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLD 214
G + L V+ + + + +S+ + ++G L +Y GG+DGS R
Sbjct: 331 GGYDGRSRLSSVECLDYTSEEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHT 390
Query: 215 SVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGI-EQVQRYNPKVN 273
S+ERYDP ++WS + M+ A +V G++Y GG DG I V+RY+P
Sbjct: 391 SMERYDPNIDQWSMLGDMQTAREGAGLVVANGVIYCLGGY---DGLNILSSVERYDPHTG 447
Query: 274 QWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKR 333
W + PM RSGA + L+ IYV+GG+ T + + VE Y+I ++W + M R
Sbjct: 448 HWSHVTPMATKRSGAGVSLLNDHIYVVGGFDG-TAHLSSVEAYNIRTDSWTTMTSMTTPR 506
Query: 334 YRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLG-CV 387
G V+ G++Y + G +G + +S+ECYD DSW +++ + + R G CV
Sbjct: 507 CYVGATVLRGRLYAIAGYDG-NSLLNSVECYDPLIDSWAVVTSMATQRCDAGVCV 560
|
|
| UNIPROTKB|F1NXJ5 KLHL3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 467 (169.5 bits), Expect = 2.3e-52, Sum P(2) = 2.3e-52
Identities = 123/358 (34%), Positives = 179/358 (50%)
Query: 44 KVLETIRLPQLSPYFLHDCVEQCAIIKNNPQCAQLVEEAKLFHLLP-DRRSAHITPRTKP 102
K++E +RLP L +L VE+ A+IKNN C + EA +HLLP D+R PRTKP
Sbjct: 229 KLMEHVRLPLLPRDYLVQTVEEEALIKNNNTCKDFLIEAMKYHLLPLDQRQLIKNPRTKP 288
Query: 103 RKSAGSINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYC 162
R V+I VGG+ K + RSVE + + + W ++ LP + G+V N +Y
Sbjct: 289 RTPVSLPKVMIVVGGQAPKAI-RSVECYDFEEERWDQVAELPSRRCRAGVVFMAGN-VYA 346
Query: 163 LD------IVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSV 216
+ V V V + S+ S++ G A+L+ +YAVGG+DGS L SV
Sbjct: 347 VGGFNGSLRVRTVDVYDGVKDQWTSIASMQERRSTLGAAVLNDLLYAVGGFDGSTGLASV 406
Query: 217 ERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQ 276
E Y NEW ++ PM +S V EG LY GG + V++YNP N+W
Sbjct: 407 EAYSYKTNEWFFVAPMNTRRSSVGVGVVEGKLYAVGGYDGASRQCLSTVEQYNPATNEWT 466
Query: 277 DLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRP 336
+A M RSGA + L +Y GG H VE Y NTW+ + M R
Sbjct: 467 YVADMSTRRSGAGVGVLSGLLYATGG-HDGPLVRKSVEVYDPGTNTWKQVADMNMCRRNA 525
Query: 337 GIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIM-SHLPSARSWLGCVPLQIHK 393
G+ ++G +YV+GG++G S+E Y+ D W ++ + + + RS+ G IHK
Sbjct: 526 GVCAVNGLLYVVGGDDGSCNLA-SVEYYNPITDKWTLLPTSMSTGRSYAGVAV--IHK 580
|
|
| UNIPROTKB|B4GRJ2 dbo "Kelch-like protein diablo" [Drosophila persimilis (taxid:7234)] | Back alignment and assigned GO terms |
|---|
Score = 448 (162.8 bits), Expect = 6.1e-52, Sum P(2) = 6.1e-52
Identities = 117/341 (34%), Positives = 179/341 (52%)
Query: 44 KVLETIRLPQLSPYFLHDCVEQCAIIKNNPQCAQLVEEAKLFHLLPDRRSAHITPRTKPR 103
+VL+ +RLP LSP FL V +++++ C LV+EAK + LLP R PRT+PR
Sbjct: 258 QVLQHVRLPLLSPKFLVGTVGSDLLVRSDEACRDLVDEAKNYLLLPQERPLMQGPRTRPR 317
Query: 104 KSAGSINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTI-YC 162
K V+ AVGG + SVE F +T WK ++ P + + G+ V+ N + Y
Sbjct: 318 KPTRRGEVLFAVGGWCSGDAIASVERFDPQTNDWKMVA--PMSKRRCGVGVAVLNDLLYA 375
Query: 163 LDIVDIVYVAASMHKILHSLGSLKFDFDVS---------GIAMLDGFVYAVGGWDGSCRL 213
+ D S+ + + + ++ DV+ G+A+LDGF+YAVGG DG L
Sbjct: 376 VGGHDGQSYLNSIER--YDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCL 433
Query: 214 DSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGD-GIEQVQRYNPKV 272
+ VERYDP +N+WS + PM AV G LY GG+ DG + V+RY+P+
Sbjct: 434 NHVERYDPKENKWSKVAPMTTRRLGVAVAVLGGFLYAIGGS---DGQCPLNTVERYDPRQ 490
Query: 273 NQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEK 332
N+W ++PM R ++ IY +GG E ++ E Y+ NTW M +
Sbjct: 491 NKWVAVSPMSTRRKHLGCAVFNNYIYAVGGRDDCMELSS-AERYNPLTNTWSPIVAMTSR 549
Query: 333 RYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEI 373
R G+AV++G++Y +GG +G Y +IE YD + + W +
Sbjct: 550 RSGVGLAVVNGQLYAVGGFDG-SAYLKTIEVYDPETNQWRL 589
|
|
| UNIPROTKB|Q2M0J9 dbo "Kelch-like protein diablo" [Drosophila pseudoobscura pseudoobscura (taxid:46245)] | Back alignment and assigned GO terms |
|---|
Score = 448 (162.8 bits), Expect = 6.1e-52, Sum P(2) = 6.1e-52
Identities = 117/341 (34%), Positives = 179/341 (52%)
Query: 44 KVLETIRLPQLSPYFLHDCVEQCAIIKNNPQCAQLVEEAKLFHLLPDRRSAHITPRTKPR 103
+VL+ +RLP LSP FL V +++++ C LV+EAK + LLP R PRT+PR
Sbjct: 258 QVLQHVRLPLLSPKFLVGTVGSDLLVRSDEACRDLVDEAKNYLLLPQERPLMQGPRTRPR 317
Query: 104 KSAGSINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTI-YC 162
K V+ AVGG + SVE F +T WK ++ P + + G+ V+ N + Y
Sbjct: 318 KPTRRGEVLFAVGGWCSGDAIASVERFDPQTNDWKMVA--PMSKRRCGVGVAVLNDLLYA 375
Query: 163 LDIVDIVYVAASMHKILHSLGSLKFDFDVS---------GIAMLDGFVYAVGGWDGSCRL 213
+ D S+ + + + ++ DV+ G+A+LDGF+YAVGG DG L
Sbjct: 376 VGGHDGQSYLNSIER--YDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCL 433
Query: 214 DSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGD-GIEQVQRYNPKV 272
+ VERYDP +N+WS + PM AV G LY GG+ DG + V+RY+P+
Sbjct: 434 NHVERYDPKENKWSKVAPMTTRRLGVAVAVLGGFLYAIGGS---DGQCPLNTVERYDPRQ 490
Query: 273 NQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEK 332
N+W ++PM R ++ IY +GG E ++ E Y+ NTW M +
Sbjct: 491 NKWVAVSPMSTRRKHLGCAVFNNYIYAVGGRDDCMELSS-AERYNPLTNTWSPIVAMTSR 549
Query: 333 RYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEI 373
R G+AV++G++Y +GG +G Y +IE YD + + W +
Sbjct: 550 RSGVGLAVVNGQLYAVGGFDG-SAYLKTIEVYDPETNQWRL 589
|
|
| UNIPROTKB|E1B932 KLHL12 "Kelch-like protein 12" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 425 (154.7 bits), Expect = 6.1e-52, Sum P(2) = 6.1e-52
Identities = 109/356 (30%), Positives = 181/356 (50%)
Query: 45 VLETIRLPQLSPYFLHDCVEQCAIIKNNPQCAQLVEEAKLFHLLPDRRSAHITPRTKPRK 104
+L+ +R+P L+P ++ D ++ I+ + QC LV+EAK FHL P+ R+ PRT+
Sbjct: 218 LLQYVRMPLLTPRYITDVIDTEPFIRCSLQCRDLVDEAKKFHLRPELRTQMQGPRTRAHI 277
Query: 105 SAGSINVIIAVGG-EDDKVVLRSVEGFCVKTKVWKTLSCLP------FAISKHG--LVVS 155
A V++ VGG + + VE + KT+ W L + ++S H V+
Sbjct: 278 RANE--VLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIG 335
Query: 156 GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDS 215
G + L V+ + A + +S+ + ++G L +Y GG+DGS R S
Sbjct: 336 GYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTS 395
Query: 216 VERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGI-EQVQRYNPKVNQ 274
+ERYDP ++WS + M+ A +V G++Y GG DG I V++Y+P
Sbjct: 396 MERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGY---DGLNILNSVEKYDPHTGH 452
Query: 275 WQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRY 334
W ++ PM RSGA + L+ IYV+GG+ T + + VE Y+I ++W + M R
Sbjct: 453 WANVTPMATKRSGAGVALLNDHIYVVGGFDG-TAHLSSVEAYNIRTDSWTTVTSMTTPRC 511
Query: 335 RPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQ 390
G V+ G++Y + G +G + SIECYD DS+ +++ + + R G L+
Sbjct: 512 YVGATVLRGRLYAIAGYDG-NSSLSSIECYDPIIDSYGLVTSMGTQRCDAGVCALR 566
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 400 | |||
| PHA03098 | 534 | PHA03098, PHA03098, kelch-like protein; Provisiona | 1e-29 | |
| PHA03098 | 534 | PHA03098, PHA03098, kelch-like protein; Provisiona | 1e-21 | |
| pfam00651 | 101 | pfam00651, BTB, BTB/POZ domain | 4e-14 | |
| pfam01344 | 46 | pfam01344, Kelch_1, Kelch motif | 3e-11 | |
| smart00612 | 47 | smart00612, Kelch, Kelch domain | 5e-10 | |
| pfam01344 | 46 | pfam01344, Kelch_1, Kelch motif | 8e-10 | |
| smart00612 | 47 | smart00612, Kelch, Kelch domain | 6e-09 | |
| smart00225 | 97 | smart00225, BTB, Broad-Complex, Tramtrack and Bric | 6e-09 | |
| pfam01344 | 46 | pfam01344, Kelch_1, Kelch motif | 1e-08 | |
| PHA02713 | 557 | PHA02713, PHA02713, hypothetical protein; Provisio | 2e-08 | |
| PHA02790 | 480 | PHA02790, PHA02790, Kelch-like protein; Provisiona | 7e-08 | |
| PRK14131 | 376 | PRK14131, PRK14131, N-acetylneuraminic acid mutaro | 2e-07 | |
| TIGR03547 | 346 | TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | 6e-07 | |
| PLN02193 | 470 | PLN02193, PLN02193, nitrile-specifier protein | 2e-06 | |
| smart00612 | 47 | smart00612, Kelch, Kelch domain | 3e-06 | |
| PHA02713 | 557 | PHA02713, PHA02713, hypothetical protein; Provisio | 1e-05 | |
| PHA02713 | 557 | PHA02713, PHA02713, hypothetical protein; Provisio | 1e-05 | |
| pfam13964 | 50 | pfam13964, Kelch_6, Kelch motif | 1e-05 | |
| pfam13415 | 48 | pfam13415, Kelch_3, Galactose oxidase, central dom | 2e-05 | |
| pfam13964 | 50 | pfam13964, Kelch_6, Kelch motif | 4e-05 | |
| pfam13964 | 50 | pfam13964, Kelch_6, Kelch motif | 8e-05 | |
| TIGR03548 | 323 | TIGR03548, mutarot_permut, cyclically-permuted mut | 9e-05 | |
| pfam01344 | 46 | pfam01344, Kelch_1, Kelch motif | 1e-04 | |
| pfam13415 | 48 | pfam13415, Kelch_3, Galactose oxidase, central dom | 2e-04 | |
| PHA02713 | 557 | PHA02713, PHA02713, hypothetical protein; Provisio | 4e-04 | |
| COG3055 | 381 | COG3055, COG3055, Uncharacterized protein conserve | 6e-04 | |
| pfam07646 | 48 | pfam07646, Kelch_2, Kelch motif | 6e-04 | |
| pfam13964 | 50 | pfam13964, Kelch_6, Kelch motif | 8e-04 | |
| smart00612 | 47 | smart00612, Kelch, Kelch domain | 0.001 | |
| pfam13418 | 49 | pfam13418, Kelch_4, Galactose oxidase, central dom | 0.001 | |
| pfam07646 | 48 | pfam07646, Kelch_2, Kelch motif | 0.002 | |
| PRK14131 | 376 | PRK14131, PRK14131, N-acetylneuraminic acid mutaro | 0.003 | |
| PRK14131 | 376 | PRK14131, PRK14131, N-acetylneuraminic acid mutaro | 0.003 | |
| TIGR03547 | 346 | TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | 0.003 |
| >gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 1e-29
Identities = 75/352 (21%), Positives = 139/352 (39%), Gaps = 36/352 (10%)
Query: 44 KVLETIRLPQLSPYFLHDCVEQCAIIKNNPQCAQLVEEAKLFHLLPDRRSAHITPRTK-- 101
+L+ +R+ LS + IK + R I +
Sbjct: 192 LILKVLRITFLSEEGIKKLKRWKLRIKKKK------------IVFNKRCIKIIYSKKYNL 239
Query: 102 ----PRKSA-GSINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSG 156
PR S GSI I + + T+ + + +V++
Sbjct: 240 NKILPRSSTFGSIIYI----HITMSIFTYNYITNYSPLSEINTIIDIHYVYCFGSVVLN- 294
Query: 157 RNTIYCLDIVDI-VYVAASMH------KILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDG 209
N IY + ++ S+ K + + L + G+ + + +Y +GG
Sbjct: 295 -NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYN 353
Query: 210 SCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYN 269
S L++VE + P +++W P+ +P VV ++YV GG I ++ + ++ V+ ++
Sbjct: 354 SISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGG-ISKNDELLKTVECFS 412
Query: 270 PKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGW-HASTENT-NRVECYHIAENTWEYKS 327
N+W +P+ I G D IYV+GG + N VE Y+ N W S
Sbjct: 413 LNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELS 472
Query: 328 PMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPS 379
+ R + + + KIYV+GG++ ++ Y + IE YD ++W + P
Sbjct: 473 SLNFPRINASLCIFNNKIYVVGGDK-YEYYINEIEVYDDKTNTWTLFCKFPK 523
|
Length = 534 |
| >gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional | Back alignment and domain information |
|---|
Score = 96.8 bits (241), Expect = 1e-21
Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 2/147 (1%)
Query: 236 VTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDS 295
V V ++Y GG ++ + V Y+ K W + ++ PR + ++
Sbjct: 285 VYCFGSVVLNNVIYFIGGMN-KNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNN 343
Query: 296 CIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWD 355
IYV+GG + S + N VE + E+ W + P+ RY P + ++ IYV+GG D
Sbjct: 344 RIYVIGGIYNS-ISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKND 402
Query: 356 GYHDSIECYDVDNDSWEIMSHLPSARS 382
++EC+ ++ + W S LP +
Sbjct: 403 ELLKTVECFSLNTNKWSKGSPLPISHY 429
|
Length = 534 |
| >gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 4e-14
Identities = 28/55 (50%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 8 FNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL------ETIRLPQLSP 56
NE R+N E CDVTL V +F AH+ VLAA SPYFK L I L +SP
Sbjct: 1 LNELRENGELCDVTLVVGDKEFHAHKAVLAACSPYFKALFTGNKEVEITLEDVSP 55
|
The BTB (for BR-C, ttk and bab) or POZ (for Pox virus and Zinc finger) domain is present near the N-terminus of a fraction of zinc finger (pfam00096) proteins and in proteins that contain the pfam01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT. The POZ or BTB domain is also known as BR-C/Ttk or ZiN. Length = 101 |
| >gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 3e-11
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 193 GIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMK 233
G+ +L G +Y +GG+DG L SVE YDP N WS + M
Sbjct: 6 GVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKLPSMP 46
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46 |
| >gnl|CDD|128874 smart00612, Kelch, Kelch domain | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 5e-10
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 201 VYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEG 246
+Y VGG+DG RL SVE YDP N+W+ + M + V G
Sbjct: 2 IYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
|
Length = 47 |
| >gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 8e-10
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 284 PRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMK 330
PRSGA + L IYV+GG+ ++ + VE Y NTW M
Sbjct: 1 PRSGAGVVVLGGKIYVIGGY-DGGQSLSSVEVYDPETNTWSKLPSMP 46
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46 |
| >gnl|CDD|128874 smart00612, Kelch, Kelch domain | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 6e-09
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 296 CIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDG 343
IYV+GG+ + VE Y N W M R G+AVI+G
Sbjct: 1 KIYVVGGFD-GGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
|
Length = 47 |
| >gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 6e-09
Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 19 DVTLCVDGSKFPAHRVVLAASSPYFKVL----------ETIRLPQLSPYFLHDCVE--QC 66
DVTL V G KF AH+ VLAA SPYFK L I L +SP +
Sbjct: 1 DVTLVVGGKKFHAHKAVLAAHSPYFKALFSSDFKESDKSEIYLDDVSPEDFRALLNFLYT 60
Query: 67 AIIKNNPQCAQLV-EEAKLFHL 87
+ + + + E A +
Sbjct: 61 GKLDLPEENVEELLELADYLQI 82
|
Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. Length = 97 |
| >gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-08
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 332 KRYRPGIAVIDGKIYVLGGEEGWDG--YHDSIECYDVDNDSWEIMSHLP 378
R G+ V+ GKIYV+G G+DG S+E YD + ++W + +P
Sbjct: 1 PRSGAGVVVLGGKIYVIG---GYDGGQSLSSVEVYDPETNTWSKLPSMP 46
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46 |
| >gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 2e-08
Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 293 LDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEE 352
+D+ I + GG++ + + N+V +I PM + R R +AVID IY +GG+
Sbjct: 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQN 361
Query: 353 GWDGYHDSIECYDVDNDSWEIMSHLPSARSWLG-CV 387
G + +IECY + +D W+++ +P A S G CV
Sbjct: 362 GTN-VERTIECYTMGDDKWKMLPDMPIALSSYGMCV 396
|
Length = 557 |
| >gnl|CDD|165153 PHA02790, PHA02790, Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 7e-08
Identities = 51/211 (24%), Positives = 79/211 (37%), Gaps = 46/211 (21%)
Query: 201 VYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGD 260
VY +GGW + ++ + N W I PM + V LYV GG
Sbjct: 274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGL-----P 328
Query: 261 GIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNR-------- 312
V+R+ W ++ +L PR A+ ++++ IYV+GG H+ T+ T
Sbjct: 329 NPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGG-HSETDTTTEYLLPNHDQ 387
Query: 313 -----------------------------VECYHIAENTWEYKSPMKEKRYRPGIAVIDG 343
E Y + NTW R P + ++D
Sbjct: 388 WQFGPSTYYPHYKSCALVFGRRLFLVGRNAEFYCESSNTWTLIDDPIYPRDNPELIIVDN 447
Query: 344 KIYVLGG-EEGWDGYHDSIECYDVDNDSWEI 373
K+ ++GG G Y D+IE Y+ SW I
Sbjct: 448 KLLLIGGFYRG--SYIDTIEVYNNRTYSWNI 476
|
Length = 480 |
| >gnl|CDD|237617 PRK14131, PRK14131, N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 45/151 (29%)
Query: 195 AMLDGFVYAVGGW-----DGSCRL-DSVERYDPTKNEWSYIE---PMKLAVTSPAVVAHE 245
A +DG +Y GG +GS ++ D V +YDP N W ++ P+ LA AV H
Sbjct: 81 AFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHV-AVSLHN 139
Query: 246 GMLYVTGG--------------AILEDGDGIEQVQR------------------YNPKVN 273
G Y+TGG A +D +++ Y+P N
Sbjct: 140 GKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTN 199
Query: 274 QWQDLA--PMLIPRSGAAICALDSCIYVLGG 302
QW++ P L +G+A+ + ++++ G
Sbjct: 200 QWKNAGESPFL-GTAGSAVVIKGNKLWLING 229
|
Length = 376 |
| >gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 6e-07
Identities = 61/256 (23%), Positives = 92/256 (35%), Gaps = 78/256 (30%)
Query: 195 AMLDGFVYAVGG-----WDGSCR-LDSVERYDPTKNEWSYIEPMKLAVTSP-------AV 241
A +DG +Y GG +GS + D V RYDP KN W KL SP
Sbjct: 60 AAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSW-----QKLDTRSPVGLLGASGF 114
Query: 242 VAHEGMLYVTGG--------------AILEDGDGIEQVQR------------------YN 269
H G Y TGG A +D + +++ Y+
Sbjct: 115 SLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYD 174
Query: 270 PKVNQWQDLA--PMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKS 327
P NQW++L P L +G+AI + + ++ G T V+ Y E+
Sbjct: 175 PSTNQWRNLGENPFL-GTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNK 233
Query: 328 ----PMKEKRYRPGIA-----VIDGKIYVLGGEE---GWDGY-------HDSI------E 362
P + + G+A + +G + V GG + Y H+ + E
Sbjct: 234 LPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSE 293
Query: 363 CYDVDNDSWEIMSHLP 378
Y +DN W + LP
Sbjct: 294 VYALDNGKWSKVGKLP 309
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. Length = 346 |
| >gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 2e-06
Identities = 44/188 (23%), Positives = 68/188 (36%), Gaps = 55/188 (29%)
Query: 201 VYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGD 260
+Y GG D S + + +D T NEW + P++ T
Sbjct: 231 LYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPT----------------------- 267
Query: 261 GIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAE 320
PRS ++ A + +YV GG A T ++ Y+I +
Sbjct: 268 -----------------------PRSFHSMAADEENVYVFGGVSA-TARLKTLDSYNIVD 303
Query: 321 NTWEYKSPMKEK---RYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSW---EIM 374
W + S + R G+ V+ GK++V+ G G + D + YD D W E
Sbjct: 304 KKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCE--VDDVHYYDPVQDKWTQVETF 361
Query: 375 SHLPSARS 382
PS RS
Sbjct: 362 GVRPSERS 369
|
Length = 470 |
| >gnl|CDD|128874 smart00612, Kelch, Kelch domain | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 3e-06
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 344 KIYVLGGEEGWDG--YHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQ 390
KIYV+GG +DG S+E YD + + W + +P+ RS G +
Sbjct: 1 KIYVVGG---FDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVIN 46
|
Length = 47 |
| >gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 1e-05
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 20/119 (16%)
Query: 277 DLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNR-VECYHIAENTWEYKSPMKEKRYR 335
+L PM+ R ++ +D IY +GG + + N R +ECY + ++ W+ M
Sbjct: 334 ELPPMIKNRCRFSLAVIDDTIYAIGGQNGT--NVERTIECYTMGDDKWKMLPDMPIALSS 391
Query: 336 PGIAVIDGKIYVLGGEEGWDGY-----------------HDSIECYDVDNDSWEIMSHL 377
G+ V+D IY++GG Y + + YD N+ WE + +
Sbjct: 392 YGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF 450
|
Length = 557 |
| >gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 1e-05
Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 32/171 (18%)
Query: 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCL--DIVD 167
+ I A+GG++ V R++E + + WK L +P A+S +G+ V + IY +
Sbjct: 352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQ-YIYIIGGRTEH 410
Query: 168 IVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWS 227
I Y + +H + S+ + D S + V RYD N W
Sbjct: 411 IDYTS------VHHMNSIDMEEDT----------------HSS---NKVIRYDTVNNIWE 445
Query: 228 YIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQ-VQRYNPKV-NQWQ 276
+ P VV+H+ +YV ++D ++ + RYN N W+
Sbjct: 446 TLPNFWTGTIRPGVVSHKDDIYVV--CDIKDEKNVKTCIFRYNTNTYNGWE 494
|
Length = 557 |
| >gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 1e-05
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 333 RYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSAR 381
R + GKIYV GG + + YD + SWE + LP+ R
Sbjct: 2 RTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPLPTPR 50
|
Length = 50 |
| >gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 2e-05
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 342 DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCV 387
GKIYV GG + + YD+D ++WE + LP R+
Sbjct: 1 GGKIYVFGGLGDGGTRLNDLWVYDLDTNTWEKLGDLPGPRAGHAAT 46
|
Length = 48 |
| >gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 4e-05
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 237 TSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPR 285
T + V+ G +YV GG +V Y+P+ W+ L P+ PR
Sbjct: 3 TGHSAVSVGGKIYVFGGYS-NGSKASNKVLVYDPETGSWEKLPPLPTPR 50
|
Length = 50 |
| >gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 8e-05
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 284 PRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKR 333
PR+G + ++ IYV GG+ ++ +N+V Y +WE P+ R
Sbjct: 1 PRTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPLPTPR 50
|
Length = 50 |
| >gnl|CDD|211835 TIGR03548, mutarot_permut, cyclically-permuted mutarotase family protein | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 9e-05
Identities = 58/260 (22%), Positives = 93/260 (35%), Gaps = 38/260 (14%)
Query: 136 VWKTLSCLPFAISKHGLVVSGRNTIYCL----------DIVDIVYVAASMHKILHSLGSL 185
W LP+A + +G +S N IY + + I + I+ +L SL
Sbjct: 52 KWVKAGQLPYAAA-YGASISTENGIYYIGGSNSSESFSSVYRITLDESKEALIIETLPSL 110
Query: 186 KFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAV-VAH 244
F D DG +Y GG + ++ EW + A V V
Sbjct: 111 PFAMDNGSATYKDGKLYVGGGNANGKPSNKFYCFNLETQEWEELPDFPGAPRVQPVCVKL 170
Query: 245 EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLI---PRS---GAAICALDSCIY 298
+ LYV GG D +Y+PK W+ +A L P S A+I +S +
Sbjct: 171 QNELYVFGGG---DNIAYTDGYKYSPKTGTWEKVADPLSDGEPISLLGAASIAINESLLL 227
Query: 299 VLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYH 358
+GG+ N + I T + +S Y L + W ++
Sbjct: 228 CIGGF-----NYDVFNDAVIRLATMKDESLKSYA-----------AEYFLHPPD-WYRWN 270
Query: 359 DSIECYDVDNDSWEIMSHLP 378
D + YDV + W+ + + P
Sbjct: 271 DKVLIYDVRSGKWKSIGNSP 290
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. Length = 323 |
| >gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 1e-04
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 240 AVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPM 281
VV G +YV GG + G + V+ Y+P+ N W L M
Sbjct: 6 GVVVLGGKIYVIGG--YDGGQSLSSVEVYDPETNTWSKLPSM 45
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46 |
| >gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 2e-04
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 246 GMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL 293
G +YV GG + + G + + Y+ N W+ L + PR+G A +
Sbjct: 2 GKIYVFGG-LGDGGTRLNDLWVYDLDTNTWEKLGDLPGPRAGHAATVI 48
|
Length = 48 |
| >gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 4e-04
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 16/101 (15%)
Query: 194 IAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGG 253
+A++D +YA+GG +G+ ++E Y ++W + M +A++S + + +Y+ GG
Sbjct: 347 LAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGG 406
Query: 254 AIL----------------EDGDGIEQVQRYNPKVNQWQDL 278
ED +V RY+ N W+ L
Sbjct: 407 RTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL 447
|
Length = 557 |
| >gnl|CDD|225597 COG3055, COG3055, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 6e-04
Identities = 46/235 (19%), Positives = 76/235 (32%), Gaps = 72/235 (30%)
Query: 213 LDSVERYDPTKNEWSYIEPMKLAVTSP-------AVVAHEGMLYVTGGAILEDGDGI--- 262
+ RYDP+ N W KL SP + +Y GG +G
Sbjct: 112 FNDAYRYDPSTNSW-----HKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFED 166
Query: 263 --------EQVQR---------------------YNPKVNQWQDLA--PMLIPRSGAAIC 291
E V + Y+P NQW++L P +G+A+
Sbjct: 167 VGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFY-GNAGSAVV 225
Query: 292 ALDSCIYVLGGWHASTENTNRVECYHIAENTWEYK----SPMKEKRYRPGIA-----VID 342
+ + ++ G T V+ + ++ P + G+A +
Sbjct: 226 IKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSN 285
Query: 343 GKIYVLGG----------EEGWDGYHDSI------ECYDVDNDSWEIMSHLPSAR 381
G++ V GG + G H+ + E Y DN SW+I+ LP
Sbjct: 286 GEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDNGSWKIVGELPQGL 340
|
Length = 381 |
| >gnl|CDD|116261 pfam07646, Kelch_2, Kelch motif | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 6e-04
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 284 PRSGAAICALDSCIYVLGGWHAST-ENTNRVECYHIAENTWEYKSPMK 330
PR A + +YV+GG +++ + N W +
Sbjct: 1 PRYPHASVVVGGKLYVVGGSTGLGDLSSSDLWVLDPETNVWTELPALP 48
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 48 |
| >gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif | Back alignment and domain information |
|---|
Score = 36.7 bits (85), Expect = 8e-04
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 192 SGIAMLDGFVYAVGG-WDGSCRLDSVERYDPTKNEWSYIEPM 232
+ G +Y GG +GS + V YDP W + P+
Sbjct: 5 HSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPL 46
|
Length = 50 |
| >gnl|CDD|128874 smart00612, Kelch, Kelch domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.001
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVV 154
I VGG D L+SVE + +T W L +P S HG+ V
Sbjct: 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAV 44
|
Length = 47 |
| >gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 36.1 bits (84), Expect = 0.001
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 338 IAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPS 379
++ DG++Y+ GGE + +D+ ++W + LPS
Sbjct: 8 TSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWTRLPSLPS 49
|
Length = 49 |
| >gnl|CDD|116261 pfam07646, Kelch_2, Kelch motif | Back alignment and domain information |
|---|
Score = 35.8 bits (83), Expect = 0.002
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 333 RYRPGIAVIDGKIYVLGG-EEGWDGYHDSIECYDVDNDSWEIMSHLP 378
RY V+ GK+YV+GG D + D + + W + LP
Sbjct: 2 RYPHASVVVGGKLYVVGGSTGLGDLSSSDLWVLDPETNVWTELPALP 48
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 48 |
| >gnl|CDD|237617 PRK14131, PRK14131, N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 12/96 (12%)
Query: 273 NQWQDLAPML-IPRSGAAICALDSCIYVLGGWHASTENT-----NRVECYHIAENTWEYK 326
W +A PR A +D +YV GG + + V Y N+W+ K
Sbjct: 62 KGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQ-K 120
Query: 327 SPMKEKRYRPGIAVI---DGKIYVLGG--EEGWDGY 357
+ G + +GK Y+ GG + +DGY
Sbjct: 121 LDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGY 156
|
Length = 376 |
| >gnl|CDD|237617 PRK14131, PRK14131, N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 239 PAVVAHEGMLYVTGGAILEDGDGIEQVQ----RYNPKVNQWQDLAPMLIPRS--GAAICA 292
+G LYV GG + +G QV +Y+PK N WQ L P G +
Sbjct: 78 AVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKL-DTRSPVGLAGHVAVS 136
Query: 293 LD-SCIYVLGG 302
L Y+ GG
Sbjct: 137 LHNGKAYITGG 147
|
Length = 376 |
| >gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 239 PAVVAHEGMLYVTGGAILEDGDGIEQVQ----RYNPKVNQWQDLAPMLIPRS--GAAICA 292
A +G LYV GG + +G QV RY+PK N WQ L P GA+ +
Sbjct: 57 AVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRS-PVGLLGASGFS 115
Query: 293 LD-SCIYVLGGWHASTEN 309
L Y GG + + +
Sbjct: 116 LHNGQAYFTGGVNKNIFD 133
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. Length = 346 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 400 | |||
| KOG4441|consensus | 571 | 100.0 | ||
| PHA02713 | 557 | hypothetical protein; Provisional | 100.0 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 100.0 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 100.0 | |
| KOG4441|consensus | 571 | 100.0 | ||
| PHA02713 | 557 | hypothetical protein; Provisional | 100.0 | |
| PLN02193 | 470 | nitrile-specifier protein | 100.0 | |
| PLN02153 | 341 | epithiospecifier protein | 100.0 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 100.0 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 100.0 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 100.0 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 100.0 | |
| PLN02153 | 341 | epithiospecifier protein | 100.0 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 100.0 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 100.0 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 100.0 | |
| PLN02193 | 470 | nitrile-specifier protein | 100.0 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 100.0 | |
| KOG4693|consensus | 392 | 100.0 | ||
| KOG4693|consensus | 392 | 100.0 | ||
| KOG0379|consensus | 482 | 99.96 | ||
| KOG0379|consensus | 482 | 99.96 | ||
| KOG1230|consensus | 521 | 99.93 | ||
| KOG1230|consensus | 521 | 99.93 | ||
| KOG4152|consensus | 830 | 99.92 | ||
| KOG4152|consensus | 830 | 99.91 | ||
| COG3055 | 381 | Uncharacterized protein conserved in bacteria [Fun | 99.85 | |
| COG3055 | 381 | Uncharacterized protein conserved in bacteria [Fun | 99.76 | |
| KOG2437|consensus | 723 | 99.38 | ||
| PF13964 | 50 | Kelch_6: Kelch motif | 99.38 | |
| PF13964 | 50 | Kelch_6: Kelch motif | 99.35 | |
| PF01344 | 47 | Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is | 99.16 | |
| PF01344 | 47 | Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is | 99.15 | |
| PF13415 | 49 | Kelch_3: Galactose oxidase, central domain | 99.14 | |
| KOG2437|consensus | 723 | 99.13 | ||
| PF00651 | 111 | BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( | 99.12 | |
| PF07646 | 49 | Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is | 98.99 | |
| smart00612 | 47 | Kelch Kelch domain. | 98.99 | |
| PF13415 | 49 | Kelch_3: Galactose oxidase, central domain | 98.96 | |
| smart00612 | 47 | Kelch Kelch domain. | 98.94 | |
| PF13418 | 49 | Kelch_4: Galactose oxidase, central domain; PDB: 2 | 98.94 | |
| PF07646 | 49 | Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is | 98.93 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 98.88 | |
| PF13418 | 49 | Kelch_4: Galactose oxidase, central domain; PDB: 2 | 98.85 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 98.75 | |
| TIGR01640 | 230 | F_box_assoc_1 F-box protein interaction domain. Th | 98.71 | |
| KOG4350|consensus | 620 | 98.59 | ||
| smart00225 | 90 | BTB Broad-Complex, Tramtrack and Bric a brac. Doma | 98.59 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.56 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.56 | |
| PLN02772 | 398 | guanylate kinase | 98.49 | |
| PLN02772 | 398 | guanylate kinase | 98.48 | |
| PF13854 | 42 | Kelch_5: Kelch motif | 98.47 | |
| TIGR01640 | 230 | F_box_assoc_1 F-box protein interaction domain. Th | 98.44 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.38 | |
| PF13854 | 42 | Kelch_5: Kelch motif | 98.34 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.32 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.25 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.15 | |
| KOG2075|consensus | 521 | 97.8 | ||
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.76 | |
| PF07893 | 342 | DUF1668: Protein of unknown function (DUF1668); In | 97.71 | |
| PF07893 | 342 | DUF1668: Protein of unknown function (DUF1668); In | 97.69 | |
| PF03089 | 337 | RAG2: Recombination activating protein 2; InterPro | 97.64 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.56 | |
| PF03089 | 337 | RAG2: Recombination activating protein 2; InterPro | 97.52 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 97.51 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 97.42 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.35 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 97.34 | |
| KOG4591|consensus | 280 | 97.24 | ||
| smart00284 | 255 | OLF Olfactomedin-like domains. | 97.03 | |
| cd00094 | 194 | HX Hemopexin-like repeats.; Hemopexin is a heme-bi | 96.93 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 96.91 | |
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 96.9 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 96.87 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.85 | |
| KOG0310|consensus | 487 | 96.78 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 96.72 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 96.64 | |
| KOG2055|consensus | 514 | 96.61 | ||
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 96.51 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.5 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 96.48 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.42 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 96.39 | |
| KOG2048|consensus | 691 | 96.37 | ||
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 96.29 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 96.28 | |
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 96.26 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.16 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.14 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 96.13 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 96.09 | |
| KOG0783|consensus | 1267 | 96.07 | ||
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 95.99 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 95.99 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 95.95 | |
| KOG2055|consensus | 514 | 95.93 | ||
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 95.93 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 95.81 | |
| KOG0289|consensus | 506 | 95.61 | ||
| KOG0310|consensus | 487 | 95.55 | ||
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 95.52 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 95.45 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 95.31 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 95.3 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 95.28 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 95.27 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 95.25 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 95.24 | |
| smart00284 | 255 | OLF Olfactomedin-like domains. | 95.21 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 95.09 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 95.07 | |
| cd00094 | 194 | HX Hemopexin-like repeats.; Hemopexin is a heme-bi | 94.94 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 94.92 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 94.85 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 94.83 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 94.76 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 94.73 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 94.68 | |
| KOG0783|consensus | 1267 | 94.62 | ||
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 94.59 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 94.46 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 94.41 | |
| KOG3545|consensus | 249 | 94.17 | ||
| PF07707 | 103 | BACK: BTB And C-terminal Kelch; InterPro: IPR01170 | 93.77 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 93.56 | |
| PTZ00421 | 493 | coronin; Provisional | 93.39 | |
| PF08268 | 129 | FBA_3: F-box associated domain; InterPro: IPR01318 | 93.39 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 92.95 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 92.93 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 92.8 | |
| KOG2321|consensus | 703 | 92.78 | ||
| KOG2838|consensus | 401 | 92.47 | ||
| PF09910 | 339 | DUF2139: Uncharacterized protein conserved in arch | 92.39 | |
| KOG1036|consensus | 323 | 91.93 | ||
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 91.82 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 91.7 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 91.67 | |
| KOG0278|consensus | 334 | 91.43 | ||
| KOG0289|consensus | 506 | 91.39 | ||
| KOG0316|consensus | 307 | 91.34 | ||
| smart00875 | 101 | BACK BTB And C-terminal Kelch. The BACK domain is | 91.29 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 91.28 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 90.98 | |
| PF08268 | 129 | FBA_3: F-box associated domain; InterPro: IPR01318 | 90.94 | |
| PLN03215 | 373 | ascorbic acid mannose pathway regulator 1; Provisi | 90.7 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 90.51 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 90.08 | |
| PF09910 | 339 | DUF2139: Uncharacterized protein conserved in arch | 89.95 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 89.73 | |
| KOG0291|consensus | 893 | 89.48 | ||
| PTZ00421 | 493 | coronin; Provisional | 88.99 | |
| KOG0278|consensus | 334 | 88.65 | ||
| KOG1036|consensus | 323 | 87.44 | ||
| PLN03215 | 373 | ascorbic acid mannose pathway regulator 1; Provisi | 87.14 | |
| KOG4682|consensus | 488 | 87.06 | ||
| KOG0643|consensus | 327 | 86.28 | ||
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 86.21 | |
| PRK10115 | 686 | protease 2; Provisional | 85.97 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 85.51 | |
| PTZ00420 | 568 | coronin; Provisional | 85.0 | |
| KOG0296|consensus | 399 | 84.96 | ||
| KOG0649|consensus | 325 | 84.41 | ||
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 84.36 | |
| PF12217 | 367 | End_beta_propel: Catalytic beta propeller domain o | 84.09 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 84.05 | |
| KOG2321|consensus | 703 | 83.89 | ||
| PTZ00420 | 568 | coronin; Provisional | 83.26 | |
| KOG2048|consensus | 691 | 82.5 | ||
| KOG0315|consensus | 311 | 81.86 | ||
| KOG0640|consensus | 430 | 81.74 | ||
| COG4447 | 339 | Uncharacterized protein related to plant photosyst | 81.56 | |
| KOG0316|consensus | 307 | 81.03 | ||
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 81.0 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 80.76 |
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-74 Score=552.27 Aligned_cols=336 Identities=35% Similarity=0.656 Sum_probs=315.6
Q ss_pred ceeecCCCCHHHHHHHhhhcccccCchhHHHHHHHHHhcCCCcccccccCCCCcCcCCCCCCCcEEEEEeccCC-Ccccc
Q psy2979 47 ETIRLPQLSPYFLHDCVEQCAIIKNNPQCAQLVEEAKLFHLLPDRRSAHITPRTKPRKSAGSINVIIAVGGEDD-KVVLR 125 (400)
Q Consensus 47 ~~vrl~~l~~~~l~~~i~~~~l~~~~~~c~~~l~~a~~~~~~~~~~~~~~~~~~~~r~~~~~~~~i~~~gg~~~-~~~~~ 125 (400)
++|||+++++.+|.+.+..++++..++.|++++.+|.++|..+..+..++++++++|. ...+.++++||... ....+
T Consensus 224 ~~vr~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~~~~~~~~~~~~~t~~r~--~~~~~l~~vGG~~~~~~~~~ 301 (571)
T KOG4441|consen 224 EAVRLPLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKYHLLPQRRPVMQSPRTRPRR--SVSGKLVAVGGYNRQGQSLR 301 (571)
T ss_pred HhcCccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhhCcccCccccCCCcccCc--CCCCeEEEECCCCCCCcccc
Confidence 6899999999999999999999999999999999999999999988888999999996 23489999999985 67889
Q ss_pred eEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEE---e----ecCEEEEEECCCCCeEEccCCCCcceeeeEEEEC
Q psy2979 126 SVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCL---D----IVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLD 198 (400)
Q Consensus 126 ~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~---~----~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~ 198 (400)
.++.||+.++.|..+++||.+|..+++++++|. ||++ . ..+++++|||.+++|..+++|..+|..+++++++
T Consensus 302 ~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~-lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~ 380 (571)
T KOG4441|consen 302 SVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGK-LYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLD 380 (571)
T ss_pred eeEEecCCcCcEeecCCCCcccccccEEEECCE-EEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEEC
Confidence 999999999999999999999999999999999 9999 2 5578999999999999999999999999999999
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCC--cceEEEEeCCCCcee
Q psy2979 199 GFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDG--IEQVQRYNPKVNQWQ 276 (400)
Q Consensus 199 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~--~~~v~~yd~~~~~W~ 276 (400)
|.||++||.++...++++|+|||.+++|+.+++|+.+|+++++++++++||++||. ++.. ++++++|||.+++|+
T Consensus 381 g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~---~~~~~~l~sve~YDP~t~~W~ 457 (571)
T KOG4441|consen 381 GKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGG---DGSSNCLNSVECYDPETNTWT 457 (571)
T ss_pred CEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCc---CCCccccceEEEEcCCCCcee
Confidence 99999999999999999999999999999999999999999999999999999998 5544 899999999999999
Q ss_pred eccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCC
Q psy2979 277 DLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDG 356 (400)
Q Consensus 277 ~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~ 356 (400)
.+++|+.+|.++++++++++||++||.++... ..+|++|||++++|+.+++|+.+|..++++++++++|++||+ ++..
T Consensus 458 ~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~-~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~-~~~~ 535 (571)
T KOG4441|consen 458 LIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSA-LSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGF-DGNN 535 (571)
T ss_pred ecCCcccccccceEEEECCEEEEECCccCCCc-cceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecc-cCcc
Confidence 99999999999999999999999999998555 788999999999999999999999999999999999999998 8888
Q ss_pred CCCeEEEEECCCCcEEEecCCCCCCCceeeEEEc
Q psy2979 357 YHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQ 390 (400)
Q Consensus 357 ~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 390 (400)
..+.|++|||.+|+|+...++...|...+++++.
T Consensus 536 ~l~~ve~ydp~~d~W~~~~~~~~~~~~~~~~~~~ 569 (571)
T KOG4441|consen 536 NLNTVECYDPETDTWTEVTEPESGRGGAGVAVIP 569 (571)
T ss_pred ccceeEEcCCCCCceeeCCCccccccCcceEEec
Confidence 9999999999999999998877778777777764
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-64 Score=487.45 Aligned_cols=370 Identities=18% Similarity=0.261 Sum_probs=298.1
Q ss_pred hhHHHHHHHHHhcCceeceEEEEC-CeEEehhhHHHhhcCcccccc-----------ceeecCCCCHH---HHHHHhhhc
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVD-GSKFPAHRVVLAASSPYFKVL-----------ETIRLPQLSPY---FLHDCVEQC 66 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~-~~~~~~hr~vLaa~s~yf~~m-----------~~vrl~~l~~~---~l~~~i~~~ 66 (400)
..++++|++||+++.||||+|.|+ +++|||||+||||+|+||++| +.|+|++++++ .|++++|++
T Consensus 10 ~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~ 89 (557)
T PHA02713 10 RRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNR 89 (557)
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCC
Confidence 468999999999999999999997 899999999999999999998 24889999987 677899998
Q ss_pred ccccCchhHHHHHHHHHhcCCCcccccc----------------------------------------------------
Q psy2979 67 AIIKNNPQCAQLVEEAKLFHLLPDRRSA---------------------------------------------------- 94 (400)
Q Consensus 67 ~l~~~~~~c~~~l~~a~~~~~~~~~~~~---------------------------------------------------- 94 (400)
+| +.++.++++.+|..+|+....+.|
T Consensus 90 ~i--~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~L 167 (557)
T PHA02713 90 HI--SSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKKT 167 (557)
T ss_pred CC--CHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhhC
Confidence 74 344455555554443211110000
Q ss_pred --------cCCCC-c-------------------------------CcCCC-----------------------------
Q psy2979 95 --------HITPR-T-------------------------------KPRKS----------------------------- 105 (400)
Q Consensus 95 --------~~~~~-~-------------------------------~~r~~----------------------------- 105 (400)
+.+.. . ..|..
T Consensus 168 ~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d~~~r~~~~~ll~~VR~~~l~~~~~~~~~~~~~i~~~~~c~~~l~~a 247 (557)
T PHA02713 168 VFEILFDIISTNDNVYLYREGYKVTILLKWLEYNYITEEQLLCILSCIDIQNLDKKSRLLLYSNKTINMYPSCIQFLLDN 247 (557)
T ss_pred CHHHHHHHhccccccCCCcHHHHHHHHHHHHhcCHHHHHHHhhhHhhhhHhhcchhhhhhhcchHHHHhhHHHHHHHhhh
Confidence 00000 0 00000
Q ss_pred ------CCCCcEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEEe-------ecCEEEEE
Q psy2979 106 ------AGSINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCLD-------IVDIVYVA 172 (400)
Q Consensus 106 ------~~~~~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~-------~~~~~~~y 172 (400)
......+++.||.. ......+++||+.+++|..++++|.++..++++++++. ||++. ..+.+++|
T Consensus 248 ~~~~~~~~r~~~l~~~~g~~-~~~~~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~-IYviGG~~~~~~~~~~v~~Y 325 (557)
T PHA02713 248 KQNRNIIPRQLCLVCHDTKY-NVCNPCILVYNINTMEYSVISTIPNHIINYASAIVDNE-IIIAGGYNFNNPSLNKVYKI 325 (557)
T ss_pred hhhcccCCcceEEEEecCcc-ccCCCCEEEEeCCCCeEEECCCCCccccceEEEEECCE-EEEEcCCCCCCCccceEEEE
Confidence 00012344444421 22334689999999999999999999999999999999 99991 24679999
Q ss_pred ECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEc
Q psy2979 173 ASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTG 252 (400)
Q Consensus 173 d~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~G 252 (400)
||.+++|..+++|+.+|..+++++++++||++||.++....+++++|||.+++|+.+++||.+|..+++++++|+||++|
T Consensus 326 d~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviG 405 (557)
T PHA02713 326 NIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIG 405 (557)
T ss_pred ECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEe
Confidence 99999999999999999999999999999999999877677899999999999999999999999999999999999999
Q ss_pred CccccC---------------CCC-cceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEE
Q psy2979 253 GAILED---------------GDG-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECY 316 (400)
Q Consensus 253 G~~~~~---------------~~~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~y 316 (400)
|..... ... .+++++|||.+++|+.+++|+.+|..+++++++|+||++||.++.....+.+++|
T Consensus 406 G~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Y 485 (557)
T PHA02713 406 GRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRY 485 (557)
T ss_pred CCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEe
Confidence 973100 011 5789999999999999999999999999999999999999986543313578999
Q ss_pred ECCC-CeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCC
Q psy2979 317 HIAE-NTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPS 379 (400)
Q Consensus 317 d~~~-~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 379 (400)
||.+ ++|+.+++||.+|..+++++++|+||++||. ++ ...+++|||.+++|+.+++-..
T Consensus 486 dp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~-~~---~~~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 486 NTNTYNGWELITTTESRLSALHTILHDNTIMMLHCY-ES---YMLQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred cCCCCCCeeEccccCcccccceeEEECCEEEEEeee-cc---eeehhhcCcccccccchhhhcC
Confidence 9999 8999999999999999999999999999998 44 2479999999999999876543
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-54 Score=413.75 Aligned_cols=344 Identities=17% Similarity=0.243 Sum_probs=263.8
Q ss_pred HHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCccccccc---------eeec--CCCCHH---HHHHHhhhccccc
Q psy2979 5 LTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVLE---------TIRL--PQLSPY---FLHDCVEQCAIIK 70 (400)
Q Consensus 5 l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m~---------~vrl--~~l~~~---~l~~~i~~~~l~~ 70 (400)
+.++-+||.++.||||++.+ |++|||||+||||+||||++|+ .|++ .+++++ .|++++||++|.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~-~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~~v~~~~~~v~~~~l~~lldy~YTg~l~i 88 (480)
T PHA02790 10 CKNILALSMTKKFKTIIEAI-GGNIIVNSTILKKLSPYFRTHLRQKYTKNKDPVTRVCLDLDIHSLTSIVIYSYTGKVYI 88 (480)
T ss_pred hhhHHHHHhhhhhceEEEEc-CcEEeeehhhhhhcCHHHHHHhcCCccccccceEEEecCcCHHHHHHHHHhheeeeEEE
Confidence 45678999999999999887 5699999999999999999993 2444 378875 7889999999999
Q ss_pred CchhHHHHHHHHHhcCCCccccccc--CCCCcCcCCCCCCC--------------------------------cEE----
Q psy2979 71 NNPQCAQLVEEAKLFHLLPDRRSAH--ITPRTKPRKSAGSI--------------------------------NVI---- 112 (400)
Q Consensus 71 ~~~~c~~~l~~a~~~~~~~~~~~~~--~~~~~~~r~~~~~~--------------------------------~~i---- 112 (400)
+.++.++++++|..+|+.+..+.|. ......+.+|.++. +++
T Consensus 89 t~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~~ 168 (480)
T PHA02790 89 DSHNVVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLSM 168 (480)
T ss_pred ecccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCCH
Confidence 9999999999998876543332210 00000011111000 000
Q ss_pred -EEEeccC-------------------CCcc-----------cc----------e----------EE-------------
Q psy2979 113 -IAVGGED-------------------DKVV-----------LR----------S----------VE------------- 128 (400)
Q Consensus 113 -~~~gg~~-------------------~~~~-----------~~----------~----------~~------------- 128 (400)
-++..-+ .... ++ . ..
T Consensus 169 ~~lLssd~L~v~~Ee~V~eav~~Wl~~~~~~~~~l~~~vr~~ir~~~l~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~ 248 (480)
T PHA02790 169 KLILESDELNVPDEDYVVDFVIKWYMKRRNRLGNLLLLIKNVIRSNYLSPRGINNVKWILDCTKIFHCDKQPRKSYKYPF 248 (480)
T ss_pred HHhcccccCCCccHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCChhhCCHHHHHHHHHHHHHHHHhhccccccccccccc
Confidence 0000000 0000 00 0 00
Q ss_pred -EEEcCCCceEEccCCcccceeee-EEEECCeEEEEE------eecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCE
Q psy2979 129 -GFCVKTKVWKTLSCLPFAISKHG-LVVSGRNTIYCL------DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGF 200 (400)
Q Consensus 129 -~yd~~~~~w~~~~~~~~~~~~~~-~~~~~~~~iyv~------~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~ 200 (400)
.+.+...+|... ..++ .+.+++. ||++ ...+.+++|||.+++|..+++|+.+|..++++.++++
T Consensus 249 ~~~~~~~~~~~~~-------~~~~~~~~~~~~-lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~ 320 (480)
T PHA02790 249 IEYPMNMDQIIDI-------FHMCTSTHVGEV-VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNK 320 (480)
T ss_pred cccCCcccceeec-------cCCcceEEECCE-EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCE
Confidence 011111122211 1233 3457888 9999 2346799999999999999999999999999999999
Q ss_pred EEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccC
Q psy2979 201 VYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAP 280 (400)
Q Consensus 201 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~ 280 (400)
||++||.++. +++++|||.+++|+.+++||.+|..+++++++|+||++||. ++. .+.+++|||.+++|+.+++
T Consensus 321 iYviGG~~~~---~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~---~~~-~~~ve~ydp~~~~W~~~~~ 393 (480)
T PHA02790 321 LYVVGGLPNP---TSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGH---SET-DTTTEYLLPNHDQWQFGPS 393 (480)
T ss_pred EEEECCcCCC---CceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCc---CCC-CccEEEEeCCCCEEEeCCC
Confidence 9999997532 67999999999999999999999999999999999999998 443 3579999999999999999
Q ss_pred CCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCe
Q psy2979 281 MLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDS 360 (400)
Q Consensus 281 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~ 360 (400)
|+.+|..+++++++|+||++||. +++|||.+++|+.+++||.+|..+++++++|+||++||. +.....+.
T Consensus 394 m~~~r~~~~~~~~~~~IYv~GG~---------~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~-~~~~~~~~ 463 (480)
T PHA02790 394 TYYPHYKSCALVFGRRLFLVGRN---------AEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGF-YRGSYIDT 463 (480)
T ss_pred CCCccccceEEEECCEEEEECCc---------eEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCc-CCCcccce
Confidence 99999999999999999999983 688999999999999999999999999999999999998 54445688
Q ss_pred EEEEECCCCcEEEe
Q psy2979 361 IECYDVDNDSWEIM 374 (400)
Q Consensus 361 v~~yd~~~~~W~~~ 374 (400)
+++|||++++|+..
T Consensus 464 ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 464 IEVYNNRTYSWNIW 477 (480)
T ss_pred EEEEECCCCeEEec
Confidence 99999999999875
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-53 Score=413.27 Aligned_cols=265 Identities=24% Similarity=0.434 Sum_probs=227.1
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEE-------eecCEEEEEECCCCCeEEc
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCL-------DIVDIVYVAASMHKILHSL 182 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~-------~~~~~~~~yd~~~~~w~~~ 182 (400)
..+++.||.+ ........|++..++|..+++.|. +..++++++++. ||++ ...+.++.||+.+++|..+
T Consensus 251 ~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 326 (534)
T PHA03098 251 SIIYIHITMS--IFTYNYITNYSPLSEINTIIDIHY-VYCFGSVVLNNV-IYFIGGMNKNNLSVNSVVSYDTKTKSWNKV 326 (534)
T ss_pred cceEeecccc--hhhceeeecchhhhhcccccCccc-cccceEEEECCE-EEEECCCcCCCCeeccEEEEeCCCCeeeEC
Confidence 3455555544 234556678888889998876653 334688889999 9999 2345799999999999999
Q ss_pred cCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCC-
Q psy2979 183 GSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDG- 261 (400)
Q Consensus 183 ~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~- 261 (400)
++|+.+|..++++.++++||++||..+....+++++||+.+++|+.+++||.+|..+++++++++||++||.. ....
T Consensus 327 ~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~--~~~~~ 404 (534)
T PHA03098 327 PELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGIS--KNDEL 404 (534)
T ss_pred CCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcC--CCCcc
Confidence 9999999999999999999999999876678899999999999999999999999999999999999999972 2222
Q ss_pred cceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCC--CCCeEEEEECCCCeEEEccCCcCccCcceEE
Q psy2979 262 IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTE--NTNRVECYHIAENTWEYKSPMKEKRYRPGIA 339 (400)
Q Consensus 262 ~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~--~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~ 339 (400)
++.+++||+.+++|+.++++|.+|.+++++.++++||++||.+.... ..+.+++||+.+++|+.++++|.+|..++++
T Consensus 405 ~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~ 484 (534)
T PHA03098 405 LKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLC 484 (534)
T ss_pred cceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEE
Confidence 68999999999999999999999999999999999999999764321 1467999999999999999999999999999
Q ss_pred EECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCC
Q psy2979 340 VIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSAR 381 (400)
Q Consensus 340 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r 381 (400)
+++++||++||. ......+.+++||+.+++|+.++.+|.-.
T Consensus 485 ~~~~~iyv~GG~-~~~~~~~~v~~yd~~~~~W~~~~~~p~~~ 525 (534)
T PHA03098 485 IFNNKIYVVGGD-KYEYYINEIEVYDDKTNTWTLFCKFPKVI 525 (534)
T ss_pred EECCEEEEEcCC-cCCcccceeEEEeCCCCEEEecCCCcccc
Confidence 999999999998 55555789999999999999998877543
|
|
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-50 Score=387.01 Aligned_cols=391 Identities=32% Similarity=0.533 Sum_probs=315.4
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc----------ceeecCCCCHH---HHHHHhhhccc
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL----------ETIRLPQLSPY---FLHDCVEQCAI 68 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m----------~~vrl~~l~~~---~l~~~i~~~~l 68 (400)
+.+++.|+.+|+++.||||+|.+++++|+|||+||||+||||++| +.|+|.+++++ .|++++|++.+
T Consensus 21 ~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i 100 (571)
T KOG4441|consen 21 KFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGKL 100 (571)
T ss_pred HHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcceE
Confidence 568999999999999999999999999999999999999999999 57899999997 68899999999
Q ss_pred ccCchhHHHHHHHHHhcCCCcccccc--cCCCCcCcCCCCCCCcEEEEEec-----------------------------
Q psy2979 69 IKNNPQCAQLVEEAKLFHLLPDRRSA--HITPRTKPRKSAGSINVIIAVGG----------------------------- 117 (400)
Q Consensus 69 ~~~~~~c~~~l~~a~~~~~~~~~~~~--~~~~~~~~r~~~~~~~~i~~~gg----------------------------- 117 (400)
.++..+.++++++|..+|+....+.+ .......+.||.++..+....+-
T Consensus 101 ~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L~~ 180 (571)
T KOG4441|consen 101 EISEDNVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLLSL 180 (571)
T ss_pred EechHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCCCH
Confidence 99999999999999988765544321 00111122233221111000000
Q ss_pred --------cCCCcccceEE---------EEEcCC---------------------------------------------C
Q psy2979 118 --------EDDKVVLRSVE---------GFCVKT---------------------------------------------K 135 (400)
Q Consensus 118 --------~~~~~~~~~~~---------~yd~~~---------------------------------------------~ 135 (400)
.+.....++.. .+|+.. .
T Consensus 181 ~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d~~~R~~~~~~ll~~vr~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~ 260 (571)
T KOG4441|consen 181 EELIGLLSSDDLNVDSEEEVFEAAMRWVKHDFEEREEHLPALLEAVRLPLLPPQFLVEIVESEPLIKRDSACRDLLDEAK 260 (571)
T ss_pred HHHHhhccccCCCcCCHHHHHHHHHHHHhcCHhhHHHHHHHHHHhcCccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHH
Confidence 00000000000 000000 0
Q ss_pred ceEEccC----CcccceeeeEEEECCeEEEEE-------eecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEE
Q psy2979 136 VWKTLSC----LPFAISKHGLVVSGRNTIYCL-------DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAV 204 (400)
Q Consensus 136 ~w~~~~~----~~~~~~~~~~~~~~~~~iyv~-------~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~ 204 (400)
+|..++. ++.++..... ...+. ||++ ...+.+++|||.++.|..+++|+.+|..+++++++|+||++
T Consensus 261 ~~~~~~~~~~~~~~~~t~~r~-~~~~~-l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~ 338 (571)
T KOG4441|consen 261 KYHLLPQRRPVMQSPRTRPRR-SVSGK-LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVV 338 (571)
T ss_pred HHhhCcccCccccCCCcccCc-CCCCe-EEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEE
Confidence 1221211 2333332221 23344 6766 33578999999999999999999999999999999999999
Q ss_pred cccC-CCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCC-cceEEEEeCCCCceeeccCCC
Q psy2979 205 GGWD-GSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLAPML 282 (400)
Q Consensus 205 GG~~-~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~~~~ 282 (400)
||.+ +...++++++|||.+++|+.+++|+.+|..+++++++|.||++||. ++.. ++++++|||.+++|+.+++|+
T Consensus 339 GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~---dg~~~l~svE~YDp~~~~W~~va~m~ 415 (571)
T KOG4441|consen 339 GGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGF---DGEKSLNSVECYDPVTNKWTPVAPML 415 (571)
T ss_pred ccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEecc---ccccccccEEEecCCCCcccccCCCC
Confidence 9999 7888999999999999999999999999999999999999999999 8877 999999999999999999999
Q ss_pred CCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEE
Q psy2979 283 IPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIE 362 (400)
Q Consensus 283 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~ 362 (400)
.+|.++++++++++||++||.++.....+++++|||.+++|+.+++|+.+|.++++++++++||++||. ++......|+
T Consensus 416 ~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~-~~~~~~~~VE 494 (571)
T KOG4441|consen 416 TRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGF-DGTSALSSVE 494 (571)
T ss_pred cceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCc-cCCCccceEE
Confidence 999999999999999999998887723899999999999999999999999999999999999999999 5566678899
Q ss_pred EEECCCCcEEEecCCCCCCCceeeEEEccccccccc
Q psy2979 363 CYDVDNDSWEIMSHLPSARSWLGCVPLQIHKSQFVD 398 (400)
Q Consensus 363 ~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~ 398 (400)
+|||.+++|+.++.|+.+|..+++++++++.|+..|
T Consensus 495 ~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 495 RYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred EEcCCCCceeEcccCccccccccEEEECCEEEEEec
Confidence 999999999999999999999999999998887644
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-44 Score=345.93 Aligned_cols=229 Identities=20% Similarity=0.320 Sum_probs=206.2
Q ss_pred CEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccC-CCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeC
Q psy2979 167 DIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWD-GSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHE 245 (400)
Q Consensus 167 ~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~ 245 (400)
..+++|||.+++|..+++||.+|..+++++++++||++||.+ +....+++++|||.+++|..+++||.+|..+++++++
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~ 351 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID 351 (557)
T ss_pred CCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence 468999999999999999999999999999999999999986 3445788999999999999999999999999999999
Q ss_pred CEEEEEcCccccCCCC-cceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCC-----------------
Q psy2979 246 GMLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHAST----------------- 307 (400)
Q Consensus 246 ~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~----------------- 307 (400)
|+||++||. ++.. .+++++|||.+++|+.+++||.+|..+++++++|+||++||.++..
T Consensus 352 g~IYviGG~---~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 352 DTIYAIGGQ---NGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CEEEEECCc---CCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccc
Confidence 999999998 6655 7889999999999999999999999999999999999999976421
Q ss_pred CCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCC-CcEEEecCCCCCCCceee
Q psy2979 308 ENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDN-DSWEIMSHLPSARSWLGC 386 (400)
Q Consensus 308 ~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~-~~W~~~~~~~~~r~~~~~ 386 (400)
...+++++|||.+++|+.+++|+.+|..+++++++|+||++||.++.....+.+++|||++ ++|+.+++||.+|..+++
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~ 508 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHT 508 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccccee
Confidence 1157899999999999999999999999999999999999999832222335689999999 899999999999999999
Q ss_pred EEEccccccccc
Q psy2979 387 VPLQIHKSQFVD 398 (400)
Q Consensus 387 ~~~~~~~~~~~~ 398 (400)
++++++.|++.|
T Consensus 509 ~~~~~~iyv~Gg 520 (557)
T PHA02713 509 ILHDNTIMMLHC 520 (557)
T ss_pred EEECCEEEEEee
Confidence 999998888543
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-41 Score=317.59 Aligned_cols=284 Identities=21% Similarity=0.367 Sum_probs=231.8
Q ss_pred cEEEEEeccCCCcccceEEEE--EcCC----CceEEccC---CcccceeeeEEEECCeEEEEE--e------ecCEEEEE
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGF--CVKT----KVWKTLSC---LPFAISKHGLVVSGRNTIYCL--D------IVDIVYVA 172 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~y--d~~~----~~w~~~~~---~~~~~~~~~~~~~~~~~iyv~--~------~~~~~~~y 172 (400)
..|+.|+|.. ...+.++-.| ++.+ ++|.++++ +|.+|..|+++++++. ||++ . ..+.+++|
T Consensus 121 ~~ivgf~G~~-~~~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~-iyv~GG~~~~~~~~~~~v~~y 198 (470)
T PLN02193 121 GKIVGFHGRS-TDVLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNK-IYSFGGEFTPNQPIDKHLYVF 198 (470)
T ss_pred CeEEEEeccC-CCcEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCE-EEEECCcCCCCCCeeCcEEEE
Confidence 5677777765 2346666666 5544 78998875 5889999999999999 9999 1 23569999
Q ss_pred ECCCCCeEEccCC---CC-cceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCC---CCcccccEEEEeC
Q psy2979 173 ASMHKILHSLGSL---KF-DFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPM---KLAVTSPAVVAHE 245 (400)
Q Consensus 173 d~~~~~w~~~~~~---~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l---~~~~~~~~~~~~~ 245 (400)
|+.+++|..++++ |. +|..++++.++++||++||.+.....+++++||+.+++|+.++++ |.+|..|++++++
T Consensus 199 D~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~ 278 (470)
T PLN02193 199 DLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADE 278 (470)
T ss_pred ECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEEC
Confidence 9999999987653 33 356888899999999999998777788999999999999999888 8899999999999
Q ss_pred CEEEEEcCccccCCCC-cceEEEEeCCCCceeeccC---CCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCC
Q psy2979 246 GMLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLAP---MLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAEN 321 (400)
Q Consensus 246 ~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~~---~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~ 321 (400)
++|||+||. ++.. .+.+++||+.+++|+.+++ ++.+|..|++++++++||++||.++. . .+++++||+.++
T Consensus 279 ~~iYv~GG~---~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~-~-~~dv~~yD~~t~ 353 (470)
T PLN02193 279 ENVYVFGGV---SATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC-E-VDDVHYYDPVQD 353 (470)
T ss_pred CEEEEECCC---CCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC-c-cCceEEEECCCC
Confidence 999999998 6554 7889999999999999874 67889999999999999999997643 2 688999999999
Q ss_pred eEEEccCC---cCccCcceEEEECCEEEEEcCccC--------CCCCCCeEEEEECCCCcEEEecCC------CCCCCce
Q psy2979 322 TWEYKSPM---KEKRYRPGIAVIDGKIYVLGGEEG--------WDGYHDSIECYDVDNDSWEIMSHL------PSARSWL 384 (400)
Q Consensus 322 ~W~~~~~~---~~~~~~~~~~~~~~~lyv~GG~~~--------~~~~~~~v~~yd~~~~~W~~~~~~------~~~r~~~ 384 (400)
+|+.++++ |.+|..+++++++++|||+||... .....+++++||+.+++|+.++.+ |.+|..+
T Consensus 354 ~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~ 433 (470)
T PLN02193 354 KWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWT 433 (470)
T ss_pred EEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccc
Confidence 99999754 789999999999999999999721 112457899999999999998753 5677776
Q ss_pred ee--EEEcc-cccccccCC
Q psy2979 385 GC--VPLQI-HKSQFVDKS 400 (400)
Q Consensus 385 ~~--~~~~~-~~~~~~~~~ 400 (400)
++ +.+.+ +.++++||.
T Consensus 434 ~~~~~~~~~~~~~~~fGG~ 452 (470)
T PLN02193 434 ASTTGTIDGKKGLVMHGGK 452 (470)
T ss_pred cceeeEEcCCceEEEEcCC
Confidence 53 23444 346666663
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=308.97 Aligned_cols=266 Identities=20% Similarity=0.281 Sum_probs=214.2
Q ss_pred CCCceEEccC----CcccceeeeEEEECCeEEEEE--e------ecCEEEEEECCCCCeEEccCCC-Ccc---eeeeEEE
Q psy2979 133 KTKVWKTLSC----LPFAISKHGLVVSGRNTIYCL--D------IVDIVYVAASMHKILHSLGSLK-FDF---DVSGIAM 196 (400)
Q Consensus 133 ~~~~w~~~~~----~~~~~~~~~~~~~~~~~iyv~--~------~~~~~~~yd~~~~~w~~~~~~~-~~r---~~~~~~~ 196 (400)
....|.++.. +|.+|..|+++++++. ||++ . ..+.++.||+.+++|..++++. .|| ..++++.
T Consensus 5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~ 83 (341)
T PLN02153 5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDK-LYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVA 83 (341)
T ss_pred cCCeEEEecCCCCCCCCCCCcceEEEECCE-EEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEE
Confidence 5567998865 7899999999999999 9999 1 2357999999999999988764 344 3688899
Q ss_pred ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCC-----CCcccccEEEEeCCEEEEEcCccccC---CCC-cceEEE
Q psy2979 197 LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPM-----KLAVTSPAVVAHEGMLYVTGGAILED---GDG-IEQVQR 267 (400)
Q Consensus 197 ~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l-----~~~~~~~~~~~~~~~iyv~GG~~~~~---~~~-~~~v~~ 267 (400)
++++||++||.......+++++||+.+++|+.+++| |.+|..|++++.+++|||+||..... ... .+++++
T Consensus 84 ~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 84 VGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred ECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEE
Confidence 999999999988766778999999999999999887 78999999999999999999983100 011 468999
Q ss_pred EeCCCCceeeccCCC---CCceeeeEEEECCeEEEEcCcCCC-------CCCCCeEEEEECCCCeEEEccC---CcCccC
Q psy2979 268 YNPKVNQWQDLAPML---IPRSGAAICALDSCIYVLGGWHAS-------TENTNRVECYHIAENTWEYKSP---MKEKRY 334 (400)
Q Consensus 268 yd~~~~~W~~~~~~~---~~r~~~~~~~~~~~iyv~GG~~~~-------~~~~~~v~~yd~~~~~W~~~~~---~~~~~~ 334 (400)
||+.+++|+.++++. .+|..+++++++++||++||.... ....+++++||+.+++|+.++. +|.+|.
T Consensus 164 yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~ 243 (341)
T PLN02153 164 YNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARS 243 (341)
T ss_pred EECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcc
Confidence 999999999998764 789999999999999999986421 1115789999999999999874 688999
Q ss_pred cceEEEECCEEEEEcCccC--------CCCCCCeEEEEECCCCcEEEec-----CCCCCCCceeeEEE-cccccccccC
Q psy2979 335 RPGIAVIDGKIYVLGGEEG--------WDGYHDSIECYDVDNDSWEIMS-----HLPSARSWLGCVPL-QIHKSQFVDK 399 (400)
Q Consensus 335 ~~~~~~~~~~lyv~GG~~~--------~~~~~~~v~~yd~~~~~W~~~~-----~~~~~r~~~~~~~~-~~~~~~~~~~ 399 (400)
.+++++++++|||+||... .....+++++||+++++|+.+. ++|.+|..++++.+ ++..+++.||
T Consensus 244 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG 322 (341)
T PLN02153 244 VFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGG 322 (341)
T ss_pred eeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcC
Confidence 9999999999999999721 1224579999999999999985 45555554455444 4434555565
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=320.75 Aligned_cols=299 Identities=15% Similarity=0.238 Sum_probs=239.7
Q ss_pred hhHHHHHHHHHhc--Cceece----EEEECCeEEehhhHHHhhcCcccc--------ccc----eeecCCCCHHHHHHHh
Q psy2979 2 KMVLTGFNEARKN--NEFCDV----TLCVDGSKFPAHRVVLAASSPYFK--------VLE----TIRLPQLSPYFLHDCV 63 (400)
Q Consensus 2 ~~~l~~l~~~r~~--~~~~Dv----~l~~~~~~~~~hr~vLaa~s~yf~--------~m~----~vrl~~l~~~~l~~~i 63 (400)
++|+++|.++.++ ++|..+ .|..|+..+..+..|+.|+..|.+ +|+ .||++.|++.++.+
T Consensus 146 ~fi~~nF~~v~~~~~~ef~~L~~~~lLssd~L~v~~Ee~V~eav~~Wl~~~~~~~~~l~~~vr~~ir~~~l~~~~l~~-- 223 (480)
T PHA02790 146 DFIAKHFLELEDDIIDNFDYLSMKLILESDELNVPDEDYVVDFVIKWYMKRRNRLGNLLLLIKNVIRSNYLSPRGINN-- 223 (480)
T ss_pred HHHHHhHHHHhcccchhhhhCCHHHhcccccCCCccHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCChhhCCHHHHHH--
Confidence 5789999999986 678665 477788899999999999998865 233 36777777776643
Q ss_pred hhcccccCchhHHHHHHHHHhcCCCccccc---------ccCCCC-cC-cCCC--CCCCcEEEEEeccCCCcccceEEEE
Q psy2979 64 EQCAIIKNNPQCAQLVEEAKLFHLLPDRRS---------AHITPR-TK-PRKS--AGSINVIIAVGGEDDKVVLRSVEGF 130 (400)
Q Consensus 64 ~~~~l~~~~~~c~~~l~~a~~~~~~~~~~~---------~~~~~~-~~-~r~~--~~~~~~i~~~gg~~~~~~~~~~~~y 130 (400)
+..++.++..++..+..+. .+.... .. ...+ ....+.++++||.+.....++++.|
T Consensus 224 -----------~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyviGG~~~~~~~~~v~~Y 292 (480)
T PHA02790 224 -----------VKWILDCTKIFHCDKQPRKSYKYPFIEYPMNMDQIIDIFHMCTSTHVGEVVYLIGGWMNNEIHNNAIAV 292 (480)
T ss_pred -----------HHHHHHHHHHhhccccccccccccccccCCcccceeeccCCcceEEECCEEEEEcCCCCCCcCCeEEEE
Confidence 2233333333321110000 000000 00 0111 1135789999998766677889999
Q ss_pred EcCCCceEEccCCcccceeeeEEEECCeEEEEE---eecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEccc
Q psy2979 131 CVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCL---DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGW 207 (400)
Q Consensus 131 d~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~---~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~ 207 (400)
||.+++|..+++||.+|..++++++++. ||++ ...+.+++|||.+++|..+++||.+|..+++++++++||++||.
T Consensus 293 dp~~~~W~~~~~m~~~r~~~~~v~~~~~-iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~ 371 (480)
T PHA02790 293 NYISNNWIPIPPMNSPRLYASGVPANNK-LYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGH 371 (480)
T ss_pred ECCCCEEEECCCCCchhhcceEEEECCE-EEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCc
Confidence 9999999999999999999999999999 9999 23467999999999999999999999999999999999999998
Q ss_pred CCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCcee
Q psy2979 208 DGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSG 287 (400)
Q Consensus 208 ~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~ 287 (400)
++. .+++++|||.+++|+.+++|+.+|..+++++++|+||++||. +++|||.+++|+.+++|+.+|..
T Consensus 372 ~~~--~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~----------~e~ydp~~~~W~~~~~m~~~r~~ 439 (480)
T PHA02790 372 SET--DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN----------AEFYCESSNTWTLIDDPIYPRDN 439 (480)
T ss_pred CCC--CccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCc----------eEEecCCCCcEeEcCCCCCCccc
Confidence 643 367999999999999999999999999999999999999996 58899999999999999999999
Q ss_pred eeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEcc
Q psy2979 288 AAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKS 327 (400)
Q Consensus 288 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 327 (400)
+++++++|+||++||.++... .+++++|||.+++|+...
T Consensus 440 ~~~~v~~~~IYviGG~~~~~~-~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 440 PELIIVDNKLLLIGGFYRGSY-IDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred cEEEEECCEEEEECCcCCCcc-cceEEEEECCCCeEEecC
Confidence 999999999999999876554 689999999999998653
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-41 Score=308.29 Aligned_cols=255 Identities=22% Similarity=0.319 Sum_probs=208.7
Q ss_pred ccCCcccceeeeEEEECCeEEEEE--eecCEEEEEEC--CCCCeEEccCCC-CcceeeeEEEECCEEEEEcccCCC----
Q psy2979 140 LSCLPFAISKHGLVVSGRNTIYCL--DIVDIVYVAAS--MHKILHSLGSLK-FDFDVSGIAMLDGFVYAVGGWDGS---- 210 (400)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~iyv~--~~~~~~~~yd~--~~~~w~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~---- 210 (400)
+++||.++..++++++++. ||++ ...+.++.||+ .+++|..+++|| .+|..+++++++++|||+||....
T Consensus 1 ~~~lp~~~~~~~~~~~~~~-vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~ 79 (346)
T TIGR03547 1 LPDLPVGFKNGTGAIIGDK-VYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEG 79 (346)
T ss_pred CCCCCccccCceEEEECCE-EEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCC
Confidence 4678989998888899999 9999 33468899996 678999999998 589999999999999999998632
Q ss_pred --CCCCeEEEEeCCCCceEEcc-CCCCcccccEEE-EeCCEEEEEcCccccCCC--------------------------
Q psy2979 211 --CRLDSVERYDPTKNEWSYIE-PMKLAVTSPAVV-AHEGMLYVTGGAILEDGD-------------------------- 260 (400)
Q Consensus 211 --~~~~~v~~yd~~~~~W~~~~-~l~~~~~~~~~~-~~~~~iyv~GG~~~~~~~-------------------------- 260 (400)
..++++++||+.+++|+.++ ++|..+..++++ +++++||++||. ++.
T Consensus 80 ~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T TIGR03547 80 SPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGV---NKNIFDGYFADLSAADKDSEPKDKLIAAY 156 (346)
T ss_pred cceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCc---ChHHHHHHHhhHhhcCccchhhhhhHHHH
Confidence 14678999999999999997 567777777766 789999999997 321
Q ss_pred --------C-cceEEEEeCCCCceeeccCCCC-CceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEE--CCCCeEEEccC
Q psy2979 261 --------G-IEQVQRYNPKVNQWQDLAPMLI-PRSGAAICALDSCIYVLGGWHASTENTNRVECYH--IAENTWEYKSP 328 (400)
Q Consensus 261 --------~-~~~v~~yd~~~~~W~~~~~~~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd--~~~~~W~~~~~ 328 (400)
. .+++++|||.+++|+.+++||. +|..+++++++++||++||..........++.|| +.+++|+.+++
T Consensus 157 ~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~ 236 (346)
T TIGR03547 157 FSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPP 236 (346)
T ss_pred hCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCC
Confidence 0 2689999999999999999996 6889999999999999999764432134566555 57789999999
Q ss_pred CcCccC-------cceEEEECCEEEEEcCccCCC----------------CCCCeEEEEECCCCcEEEecCCCCCCCcee
Q psy2979 329 MKEKRY-------RPGIAVIDGKIYVLGGEEGWD----------------GYHDSIECYDVDNDSWEIMSHLPSARSWLG 385 (400)
Q Consensus 329 ~~~~~~-------~~~~~~~~~~lyv~GG~~~~~----------------~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~ 385 (400)
||.+|. .+.+++++++|||+||.+... .....+++||+++++|+.+++||.+|..++
T Consensus 237 m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~~~~ 316 (346)
T TIGR03547 237 LPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLAYGV 316 (346)
T ss_pred CCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCceeeE
Confidence 987652 444678899999999972110 012468999999999999999999999999
Q ss_pred eEEEccccccccc
Q psy2979 386 CVPLQIHKSQFVD 398 (400)
Q Consensus 386 ~~~~~~~~~~~~~ 398 (400)
+++++++.|++.|
T Consensus 317 ~~~~~~~iyv~GG 329 (346)
T TIGR03547 317 SVSWNNGVLLIGG 329 (346)
T ss_pred EEEcCCEEEEEec
Confidence 8889998887765
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=292.36 Aligned_cols=246 Identities=19% Similarity=0.277 Sum_probs=203.2
Q ss_pred cceeeeEEEECCeEEEEE---e-------------ecCEEEEEE-CCC-CCeEEccCCCCcceeeeEEEECCEEEEEccc
Q psy2979 146 AISKHGLVVSGRNTIYCL---D-------------IVDIVYVAA-SMH-KILHSLGSLKFDFDVSGIAMLDGFVYAVGGW 207 (400)
Q Consensus 146 ~~~~~~~~~~~~~~iyv~---~-------------~~~~~~~yd-~~~-~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~ 207 (400)
.+..+.++++++. ||++ . ..++++.|+ +.. .+|..+++||.+|..++++.++++||++||.
T Consensus 3 ~~~g~~~~~~~~~-l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~ 81 (323)
T TIGR03548 3 GVAGCYAGIIGDY-ILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGS 81 (323)
T ss_pred ceeeEeeeEECCE-EEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCC
Confidence 4567788899999 9999 1 113567775 332 3799999999999988889999999999999
Q ss_pred CCCCCCCeEEEEeCCCCce----EEccCCCCcccccEEEEeCCEEEEEcCccccCCCC-cceEEEEeCCCCceeeccCCC
Q psy2979 208 DGSCRLDSVERYDPTKNEW----SYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLAPML 282 (400)
Q Consensus 208 ~~~~~~~~v~~yd~~~~~W----~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~~~~ 282 (400)
++....+++++||+.+++| +.+++||.+|..|++++++++||++||. .... .+++++||+.+++|+.+++||
T Consensus 82 ~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~---~~~~~~~~v~~yd~~~~~W~~~~~~p 158 (323)
T TIGR03548 82 NSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGN---RNGKPSNKSYLFNLETQEWFELPDFP 158 (323)
T ss_pred CCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCc---CCCccCceEEEEcCCCCCeeECCCCC
Confidence 8777788999999999998 7889999999999999999999999997 4333 789999999999999999988
Q ss_pred -CCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCc---Ccc--Ccce-EEEECCEEEEEcCccCCC
Q psy2979 283 -IPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMK---EKR--YRPG-IAVIDGKIYVLGGEEGWD 355 (400)
Q Consensus 283 -~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~---~~~--~~~~-~~~~~~~lyv~GG~~~~~ 355 (400)
.+|..+++++++++||++||.+... ..++++|||.+++|+.+++++ .++ ..+. +++.+++|||+||. +..
T Consensus 159 ~~~r~~~~~~~~~~~iYv~GG~~~~~--~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~-~~~ 235 (323)
T TIGR03548 159 GEPRVQPVCVKLQNELYVFGGGSNIA--YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGF-NKD 235 (323)
T ss_pred CCCCCcceEEEECCEEEEEcCCCCcc--ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCc-CHH
Confidence 4888899999999999999986533 356899999999999998764 233 2333 34447999999998 321
Q ss_pred --------------------------------CCCCeEEEEECCCCcEEEecCCC-CCCCceeeEEEccccccccc
Q psy2979 356 --------------------------------GYHDSIECYDVDNDSWEIMSHLP-SARSWLGCVPLQIHKSQFVD 398 (400)
Q Consensus 356 --------------------------------~~~~~v~~yd~~~~~W~~~~~~~-~~r~~~~~~~~~~~~~~~~~ 398 (400)
...+++++|||.+++|+.++++| .+|..+++++++++.|++.|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG 311 (323)
T TIGR03548 236 VYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSING 311 (323)
T ss_pred HHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEECCEEEEEec
Confidence 11368999999999999999887 58999999999998776654
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-39 Score=296.96 Aligned_cols=262 Identities=20% Similarity=0.285 Sum_probs=209.7
Q ss_pred ceEEccCCcccceeeeEEEECCeEEEEE--eecCEEEEEECC--CCCeEEccCCC-CcceeeeEEEECCEEEEEcccCC-
Q psy2979 136 VWKTLSCLPFAISKHGLVVSGRNTIYCL--DIVDIVYVAASM--HKILHSLGSLK-FDFDVSGIAMLDGFVYAVGGWDG- 209 (400)
Q Consensus 136 ~w~~~~~~~~~~~~~~~~~~~~~~iyv~--~~~~~~~~yd~~--~~~w~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~- 209 (400)
.+..+++||.++..++++++++. ||++ ...+.++.||+. +++|..++++| .+|..++++.++++|||+||...
T Consensus 18 ~~~~l~~lP~~~~~~~~~~~~~~-iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~ 96 (376)
T PRK14131 18 NAEQLPDLPVPFKNGTGAIDNNT-VYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKT 96 (376)
T ss_pred ecccCCCCCcCccCCeEEEECCE-EEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCC
Confidence 46678999999888888899999 9998 334668999986 47899999997 58999999999999999999864
Q ss_pred C-----CCCCeEEEEeCCCCceEEccC-CCCcccccEEEE-eCCEEEEEcCcccc--CC---------------------
Q psy2979 210 S-----CRLDSVERYDPTKNEWSYIEP-MKLAVTSPAVVA-HEGMLYVTGGAILE--DG--------------------- 259 (400)
Q Consensus 210 ~-----~~~~~v~~yd~~~~~W~~~~~-l~~~~~~~~~~~-~~~~iyv~GG~~~~--~~--------------------- 259 (400)
. ..++++++||+.+++|+.+++ +|.++..|++++ .+++||++||.... ++
T Consensus 97 ~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~ 176 (376)
T PRK14131 97 NSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDA 176 (376)
T ss_pred CCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHH
Confidence 1 235789999999999999986 467777777776 89999999997210 00
Q ss_pred --------CC-cceEEEEeCCCCceeeccCCCC-CceeeeEEEECCeEEEEcCcCCCCCCCCeEE--EEECCCCeEEEcc
Q psy2979 260 --------DG-IEQVQRYNPKVNQWQDLAPMLI-PRSGAAICALDSCIYVLGGWHASTENTNRVE--CYHIAENTWEYKS 327 (400)
Q Consensus 260 --------~~-~~~v~~yd~~~~~W~~~~~~~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~--~yd~~~~~W~~~~ 327 (400)
.. .+.+++|||.+++|+.++++|. +|..++++.++++||++||..........++ .||+++++|+.++
T Consensus 177 ~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~ 256 (376)
T PRK14131 177 YFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLP 256 (376)
T ss_pred HhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecC
Confidence 00 3689999999999999999996 7888899999999999999754332133444 5688999999999
Q ss_pred CCcCccCc--------ceEEEECCEEEEEcCccCCCC----------------CCCeEEEEECCCCcEEEecCCCCCCCc
Q psy2979 328 PMKEKRYR--------PGIAVIDGKIYVLGGEEGWDG----------------YHDSIECYDVDNDSWEIMSHLPSARSW 383 (400)
Q Consensus 328 ~~~~~~~~--------~~~~~~~~~lyv~GG~~~~~~----------------~~~~v~~yd~~~~~W~~~~~~~~~r~~ 383 (400)
+||.+|.. +.+++++++|||+||.+.... ....+++||+++++|+.++.||.+|..
T Consensus 257 ~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~ 336 (376)
T PRK14131 257 DLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAY 336 (376)
T ss_pred CCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccc
Confidence 99877642 225678999999999731110 013578999999999999999999999
Q ss_pred eeeEEEccccccccc
Q psy2979 384 LGCVPLQIHKSQFVD 398 (400)
Q Consensus 384 ~~~~~~~~~~~~~~~ 398 (400)
+++++++++.|++.|
T Consensus 337 ~~av~~~~~iyv~GG 351 (376)
T PRK14131 337 GVSVSWNNGVLLIGG 351 (376)
T ss_pred eEEEEeCCEEEEEcC
Confidence 999999998887765
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=285.75 Aligned_cols=259 Identities=17% Similarity=0.235 Sum_probs=206.4
Q ss_pred CcEEEEEeccCC--CcccceEEEEEcCCCceEEccCCc-ccc---eeeeEEEECCeEEEEE------eecCEEEEEECCC
Q psy2979 109 INVIIAVGGEDD--KVVLRSVEGFCVKTKVWKTLSCLP-FAI---SKHGLVVSGRNTIYCL------DIVDIVYVAASMH 176 (400)
Q Consensus 109 ~~~i~~~gg~~~--~~~~~~~~~yd~~~~~w~~~~~~~-~~~---~~~~~~~~~~~~iyv~------~~~~~~~~yd~~~ 176 (400)
.+.|+++||... ....++++.||+.+++|..+++++ .++ ..|+++++++. ||++ ...+++++||+.+
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~v~~yd~~t 110 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTK-LYIFGGRDEKREFSDFYSYDTVK 110 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCE-EEEECCCCCCCccCcEEEEECCC
Confidence 578999999853 223478999999999999987653 333 36888899999 9999 3346899999999
Q ss_pred CCeEEccCC-----CCcceeeeEEEECCEEEEEcccCCCC------CCCeEEEEeCCCCceEEccCCC---CcccccEEE
Q psy2979 177 KILHSLGSL-----KFDFDVSGIAMLDGFVYAVGGWDGSC------RLDSVERYDPTKNEWSYIEPMK---LAVTSPAVV 242 (400)
Q Consensus 177 ~~w~~~~~~-----~~~r~~~~~~~~~~~iyv~GG~~~~~------~~~~v~~yd~~~~~W~~~~~l~---~~~~~~~~~ 242 (400)
++|+.+++| |.+|..|++++.+++|||+||.+... .++++++||+.+++|+.++++. .+|..|+++
T Consensus 111 ~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~ 190 (341)
T PLN02153 111 NEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFA 190 (341)
T ss_pred CEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEE
Confidence 999999887 78899999999999999999986321 3568999999999999998764 789999999
Q ss_pred EeCCEEEEEcCccc---cCCC--C-cceEEEEeCCCCceeeccC---CCCCceeeeEEEECCeEEEEcCcCC--------
Q psy2979 243 AHEGMLYVTGGAIL---EDGD--G-IEQVQRYNPKVNQWQDLAP---MLIPRSGAAICALDSCIYVLGGWHA-------- 305 (400)
Q Consensus 243 ~~~~~iyv~GG~~~---~~~~--~-~~~v~~yd~~~~~W~~~~~---~~~~r~~~~~~~~~~~iyv~GG~~~-------- 305 (400)
+++++||++||... ..+. . .+.+++||+.+++|+++++ +|.+|..+++++++++||++||...
T Consensus 191 ~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 270 (341)
T PLN02153 191 VVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLG 270 (341)
T ss_pred EECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccc
Confidence 99999999998621 0111 1 5789999999999999974 6889999999999999999999632
Q ss_pred CCCCCCeEEEEECCCCeEEEcc-----CCcCccCcceEEE-E-CCEEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 306 STENTNRVECYHIAENTWEYKS-----PMKEKRYRPGIAV-I-DGKIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 306 ~~~~~~~v~~yd~~~~~W~~~~-----~~~~~~~~~~~~~-~-~~~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
.....+++++||+.+++|+.++ ++|.++..++++. . +++|||+||........+++++|+..+
T Consensus 271 ~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~~~~~~~~~~~~~~ 340 (341)
T PLN02153 271 PGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPTNERTDDLYFYAVNS 340 (341)
T ss_pred cccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCCCCccccceEEEeccc
Confidence 1111568999999999999986 4555555444443 3 358999999944456779999998643
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-38 Score=284.67 Aligned_cols=240 Identities=21% Similarity=0.337 Sum_probs=197.5
Q ss_pred CCcEEEEEeccCCCc----------ccceEEEEE-cCCC-ceEEccCCcccceeeeEEEECCeEEEEE------eecCEE
Q psy2979 108 SINVIIAVGGEDDKV----------VLRSVEGFC-VKTK-VWKTLSCLPFAISKHGLVVSGRNTIYCL------DIVDIV 169 (400)
Q Consensus 108 ~~~~i~~~gg~~~~~----------~~~~~~~yd-~~~~-~w~~~~~~~~~~~~~~~~~~~~~~iyv~------~~~~~~ 169 (400)
+.+.|+++||.+... ..++++.|+ +..+ +|..+++||.+|..++++++++. ||++ ...+.+
T Consensus 12 ~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~-lyviGG~~~~~~~~~v 90 (323)
T TIGR03548 12 IGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENG-IYYIGGSNSSERFSSV 90 (323)
T ss_pred ECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCE-EEEEcCCCCCCCceeE
Confidence 358999999986432 224566665 3322 69999999999988888889999 9999 345789
Q ss_pred EEEECCCCCe----EEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCC-CcccccEEEEe
Q psy2979 170 YVAASMHKIL----HSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMK-LAVTSPAVVAH 244 (400)
Q Consensus 170 ~~yd~~~~~w----~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~-~~~~~~~~~~~ 244 (400)
++||+.+++| ..+++||.+|..+++++++++||++||.......+++++||+.+++|+.+++|| .+|..++++++
T Consensus 91 ~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~ 170 (323)
T TIGR03548 91 YRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKL 170 (323)
T ss_pred EEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEE
Confidence 9999999988 788999999999999999999999999865556789999999999999999998 47888888999
Q ss_pred CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCC---CCce--eeeE-EEECCeEEEEcCcCCCCC----------
Q psy2979 245 EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPML---IPRS--GAAI-CALDSCIYVLGGWHASTE---------- 308 (400)
Q Consensus 245 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~---~~r~--~~~~-~~~~~~iyv~GG~~~~~~---------- 308 (400)
+++|||+||. ++....++++||+.+++|+.+++|+ .|+. .++. +..+++||++||.+....
T Consensus 171 ~~~iYv~GG~---~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ 247 (323)
T TIGR03548 171 QNELYVFGGG---SNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATM 247 (323)
T ss_pred CCEEEEEcCC---CCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhc
Confidence 9999999998 5433456899999999999998764 3333 3333 444799999999864210
Q ss_pred ---------------------CCCeEEEEECCCCeEEEccCCc-CccCcceEEEECCEEEEEcCc
Q psy2979 309 ---------------------NTNRVECYHIAENTWEYKSPMK-EKRYRPGIAVIDGKIYVLGGE 351 (400)
Q Consensus 309 ---------------------~~~~v~~yd~~~~~W~~~~~~~-~~~~~~~~~~~~~~lyv~GG~ 351 (400)
..+++++||+.+++|+.++++| .+|..+++++++++||++||.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~ 312 (323)
T TIGR03548 248 KDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSINGE 312 (323)
T ss_pred cchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEECCEEEEEecc
Confidence 0367999999999999999887 689999999999999999997
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=287.12 Aligned_cols=249 Identities=17% Similarity=0.264 Sum_probs=201.7
Q ss_pred CcEEEEEeccCCCcccceEEEEEc--CCCceEEccCCc-ccceeeeEEEECCeEEEEE---e---------ecCEEEEEE
Q psy2979 109 INVIIAVGGEDDKVVLRSVEGFCV--KTKVWKTLSCLP-FAISKHGLVVSGRNTIYCL---D---------IVDIVYVAA 173 (400)
Q Consensus 109 ~~~i~~~gg~~~~~~~~~~~~yd~--~~~~w~~~~~~~-~~~~~~~~~~~~~~~iyv~---~---------~~~~~~~yd 173 (400)
.+.++++||... +..+.||+ .+++|.++++|| .+|..++++++++. ||++ . ..+.+++||
T Consensus 17 ~~~vyv~GG~~~----~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~-iYv~GG~~~~~~~~~~~~~~~v~~Yd 91 (346)
T TIGR03547 17 GDKVYVGLGSAG----TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGK-LYVFGGIGKANSEGSPQVFDDVYRYD 91 (346)
T ss_pred CCEEEEEccccC----CeeEEEECCCCCCCceECCCCCCCCcccceEEEECCE-EEEEeCCCCCCCCCcceecccEEEEE
Confidence 578999999742 56788985 667899999999 68999999999999 9999 1 246799999
Q ss_pred CCCCCeEEcc-CCCCcceeeeEE-EECCEEEEEcccCCCC----------------------------------CCCeEE
Q psy2979 174 SMHKILHSLG-SLKFDFDVSGIA-MLDGFVYAVGGWDGSC----------------------------------RLDSVE 217 (400)
Q Consensus 174 ~~~~~w~~~~-~~~~~r~~~~~~-~~~~~iyv~GG~~~~~----------------------------------~~~~v~ 217 (400)
|.+++|+.++ ++|.+|..++++ .++++||++||.++.. ..++++
T Consensus 92 ~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (346)
T TIGR03547 92 PKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVL 171 (346)
T ss_pred CCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEE
Confidence 9999999997 456677777666 6899999999986321 137899
Q ss_pred EEeCCCCceEEccCCCC-cccccEEEEeCCEEEEEcCccccCCCC--cceEEEE--eCCCCceeeccCCCCCc-------
Q psy2979 218 RYDPTKNEWSYIEPMKL-AVTSPAVVAHEGMLYVTGGAILEDGDG--IEQVQRY--NPKVNQWQDLAPMLIPR------- 285 (400)
Q Consensus 218 ~yd~~~~~W~~~~~l~~-~~~~~~~~~~~~~iyv~GG~~~~~~~~--~~~v~~y--d~~~~~W~~~~~~~~~r------- 285 (400)
+|||.+++|+.+++||. +|..+++++++++|||+||. .... ..+++.| |+.+++|+.+++||.+|
T Consensus 172 ~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~---~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~ 248 (346)
T TIGR03547 172 SYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGE---IKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGL 248 (346)
T ss_pred EEECCCCceeECccCCCCcCCCceEEEECCEEEEEeee---eCCCccchheEEEEecCCCceeeecCCCCCCCCCccccc
Confidence 99999999999999996 68889999999999999998 3322 3456555 45778999999998765
Q ss_pred eeeeEEEECCeEEEEcCcCCCCC----------------CCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEc
Q psy2979 286 SGAAICALDSCIYVLGGWHASTE----------------NTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLG 349 (400)
Q Consensus 286 ~~~~~~~~~~~iyv~GG~~~~~~----------------~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~G 349 (400)
..+.+++++++||++||.+.... ...++++||+++++|+.+++||.+|..+++++++++|||+|
T Consensus 249 ~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~G 328 (346)
T TIGR03547 249 AGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIG 328 (346)
T ss_pred cEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEe
Confidence 35557888999999999753110 02478999999999999999999999888888999999999
Q ss_pred CccCCCCCCCeEEEEE
Q psy2979 350 GEEGWDGYHDSIECYD 365 (400)
Q Consensus 350 G~~~~~~~~~~v~~yd 365 (400)
|.+......++|+.|.
T Consensus 329 G~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 329 GENSGGKAVTDVYLLS 344 (346)
T ss_pred ccCCCCCEeeeEEEEE
Confidence 9844445677787663
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=284.36 Aligned_cols=260 Identities=17% Similarity=0.245 Sum_probs=208.0
Q ss_pred CCcEEEEEeccCCCcccceEEEEEcC--CCceEEccCCc-ccceeeeEEEECCeEEEEE---ee---------cCEEEEE
Q psy2979 108 SINVIIAVGGEDDKVVLRSVEGFCVK--TKVWKTLSCLP-FAISKHGLVVSGRNTIYCL---DI---------VDIVYVA 172 (400)
Q Consensus 108 ~~~~i~~~gg~~~~~~~~~~~~yd~~--~~~w~~~~~~~-~~~~~~~~~~~~~~~iyv~---~~---------~~~~~~y 172 (400)
+.+.++++||... ...+.||+. +++|..++++| .+|..++++++++. ||++ .. .+.+++|
T Consensus 37 ~~~~iyv~gG~~~----~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~-IYV~GG~~~~~~~~~~~~~~~v~~Y 111 (376)
T PRK14131 37 DNNTVYVGLGSAG----TSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGK-LYVFGGIGKTNSEGSPQVFDDVYKY 111 (376)
T ss_pred ECCEEEEEeCCCC----CeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCE-EEEEcCCCCCCCCCceeEcccEEEE
Confidence 4589999999642 357888876 47899999987 58888999999999 9999 11 3579999
Q ss_pred ECCCCCeEEccC-CCCcceeeeEEE-ECCEEEEEcccCCC----------------------------------CCCCeE
Q psy2979 173 ASMHKILHSLGS-LKFDFDVSGIAM-LDGFVYAVGGWDGS----------------------------------CRLDSV 216 (400)
Q Consensus 173 d~~~~~w~~~~~-~~~~r~~~~~~~-~~~~iyv~GG~~~~----------------------------------~~~~~v 216 (400)
|+.+++|..+++ +|.++..+++++ .+++||++||.... ...+++
T Consensus 112 D~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v 191 (376)
T PRK14131 112 DPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEV 191 (376)
T ss_pred eCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceE
Confidence 999999999986 466677777766 79999999997531 024689
Q ss_pred EEEeCCCCceEEccCCCC-cccccEEEEeCCEEEEEcCccccCCCCcceE--EEEeCCCCceeeccCCCCCcee------
Q psy2979 217 ERYDPTKNEWSYIEPMKL-AVTSPAVVAHEGMLYVTGGAILEDGDGIEQV--QRYNPKVNQWQDLAPMLIPRSG------ 287 (400)
Q Consensus 217 ~~yd~~~~~W~~~~~l~~-~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v--~~yd~~~~~W~~~~~~~~~r~~------ 287 (400)
++||+.+++|+.++++|. ++..++++.++++||++||.... +.....+ +.||+.+++|+.+++||.+|..
T Consensus 192 ~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~-~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~ 270 (376)
T PRK14131 192 LSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKP-GLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGV 270 (376)
T ss_pred EEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECC-CcCChhheEEEecCCCcceeecCCCCCCCcCCcCCcc
Confidence 999999999999999996 78888899999999999997311 1113333 4568899999999999887642
Q ss_pred --eeEEEECCeEEEEcCcCCCCC----------------CCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEc
Q psy2979 288 --AAICALDSCIYVLGGWHASTE----------------NTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLG 349 (400)
Q Consensus 288 --~~~~~~~~~iyv~GG~~~~~~----------------~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~G 349 (400)
+.+++++++||++||.+.... ....+++||+.+++|+.+++||.+|..+++++++++|||+|
T Consensus 271 ~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~G 350 (376)
T PRK14131 271 AGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIG 350 (376)
T ss_pred ceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccceEEEEeCCEEEEEc
Confidence 335678999999999753210 01357899999999999999999999999999999999999
Q ss_pred CccCCCCCCCeEEEEECCCCcEEE
Q psy2979 350 GEEGWDGYHDSIECYDVDNDSWEI 373 (400)
Q Consensus 350 G~~~~~~~~~~v~~yd~~~~~W~~ 373 (400)
|........++|++|++++++|+.
T Consensus 351 G~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 351 GETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred CCCCCCcEeeeEEEEEEcCCEEEE
Confidence 983334567899999999988875
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=288.65 Aligned_cols=257 Identities=19% Similarity=0.301 Sum_probs=212.1
Q ss_pred CCcEEEEEeccCC--CcccceEEEEEcCCCceEEccC---Ccc-cceeeeEEEECCeEEEEE------eecCEEEEEECC
Q psy2979 108 SINVIIAVGGEDD--KVVLRSVEGFCVKTKVWKTLSC---LPF-AISKHGLVVSGRNTIYCL------DIVDIVYVAASM 175 (400)
Q Consensus 108 ~~~~i~~~gg~~~--~~~~~~~~~yd~~~~~w~~~~~---~~~-~~~~~~~~~~~~~~iyv~------~~~~~~~~yd~~ 175 (400)
+.+.|+++||... ....+++++||+.+++|..++. +|. .|..|+++++++. ||++ ...+++++||+.
T Consensus 174 ~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~-lYvfGG~~~~~~~ndv~~yD~~ 252 (470)
T PLN02193 174 VGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGST-LYVFGGRDASRQYNGFYSFDTT 252 (470)
T ss_pred ECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCE-EEEECCCCCCCCCccEEEEECC
Confidence 3578999999752 2234679999999999998764 343 3567888999999 9999 345789999999
Q ss_pred CCCeEEccCC---CCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccC---CCCcccccEEEEeCCEEE
Q psy2979 176 HKILHSLGSL---KFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEP---MKLAVTSPAVVAHEGMLY 249 (400)
Q Consensus 176 ~~~w~~~~~~---~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~---l~~~~~~~~~~~~~~~iy 249 (400)
+++|..++++ |.+|..|+++..+++||++||.+.....+++++||+.+++|+.+++ +|.+|..|++++++++||
T Consensus 253 t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiy 332 (470)
T PLN02193 253 TNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVW 332 (470)
T ss_pred CCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEE
Confidence 9999999887 7899999999999999999999877778899999999999999874 678899999999999999
Q ss_pred EEcCccccCCCCcceEEEEeCCCCceeeccCC---CCCceeeeEEEECCeEEEEcCcCCC--------CCCCCeEEEEEC
Q psy2979 250 VTGGAILEDGDGIEQVQRYNPKVNQWQDLAPM---LIPRSGAAICALDSCIYVLGGWHAS--------TENTNRVECYHI 318 (400)
Q Consensus 250 v~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~~~iyv~GG~~~~--------~~~~~~v~~yd~ 318 (400)
++||. ++...+++++||+.+++|+.++++ |.+|..|++++++++||++||.... ....+++++||+
T Consensus 333 viGG~---~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~ 409 (470)
T PLN02193 333 VVYGF---NGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDT 409 (470)
T ss_pred EEECC---CCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEc
Confidence 99998 554467899999999999999765 8899999999999999999997531 111468999999
Q ss_pred CCCeEEEccCC------cCccCcceEE--EEC--CEEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 319 AENTWEYKSPM------KEKRYRPGIA--VID--GKIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 319 ~~~~W~~~~~~------~~~~~~~~~~--~~~--~~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
.+++|+.++.+ |.+|..++++ .+. +.|+++||..+.+...+++|+|++.+
T Consensus 410 ~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~~~~~ 469 (470)
T PLN02193 410 ETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFYGIDS 469 (470)
T ss_pred CcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCccccccceEEEecCC
Confidence 99999998743 5666655432 233 45999999954567789999998764
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=295.09 Aligned_cols=372 Identities=20% Similarity=0.338 Sum_probs=270.7
Q ss_pred cCceeceEEEE--CCeEEehhhHHHhhcCcccccc-------ceeecCCCCHH---HHHHHhhhcccccCchhHHHHHHH
Q psy2979 14 NNEFCDVTLCV--DGSKFPAHRVVLAASSPYFKVL-------ETIRLPQLSPY---FLHDCVEQCAIIKNNPQCAQLVEE 81 (400)
Q Consensus 14 ~~~~~Dv~l~~--~~~~~~~hr~vLaa~s~yf~~m-------~~vrl~~l~~~---~l~~~i~~~~l~~~~~~c~~~l~~ 81 (400)
++.||||+|.+ +|+.|+|||.|||++|+||++| ..|+|+. +++ .|++++|++++..+.+++.+++.+
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~~~~ll~~ 84 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFKENEINLNI-DYDSFNEVIKYIYTGKINITSNNVKDILSI 84 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCCCceEEecC-CHHHHHHHHHHhcCCceEEcHHHHHHHHHH
Confidence 78999999998 9999999999999999999998 4588888 887 677899999998888899999999
Q ss_pred HHhcCCCcccccccC--CCCcCcCCCCCC--------------------------------------CcEEEEEeccCCC
Q psy2979 82 AKLFHLLPDRRSAHI--TPRTKPRKSAGS--------------------------------------INVIIAVGGEDDK 121 (400)
Q Consensus 82 a~~~~~~~~~~~~~~--~~~~~~r~~~~~--------------------------------------~~~i~~~gg~~~~ 121 (400)
|..+++......+.. .....+.+|.++ +.+..++.. +..
T Consensus 85 A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~~l~~ll~~-~~L 163 (534)
T PHA03098 85 ANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKNELIKILSD-DKL 163 (534)
T ss_pred HHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHHHhcC-CCc
Confidence 988765443321100 000000000000 000000000 000
Q ss_pred cccceEEEEEcCCCceE------------------EccCC---------------------------------------c
Q psy2979 122 VVLRSVEGFCVKTKVWK------------------TLSCL---------------------------------------P 144 (400)
Q Consensus 122 ~~~~~~~~yd~~~~~w~------------------~~~~~---------------------------------------~ 144 (400)
...++..+|+.. -+|. +++.+ .
T Consensus 164 ~v~~E~~v~~av-~~W~~~~~~~r~~~~~~ll~~vR~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (534)
T PHA03098 164 NVSSEDVVLEII-IKWLTSKKNNKYKDICLILKVLRITFLSEEGIKKLKRWKLRIKKKKIVFNKRCIKIIYSKKYNLNKI 242 (534)
T ss_pred CcCCHHHHHHHH-HHHHhcChhhhHhHHHHHHhhccccccCHHHHHHHHHHHhhcCCcceeccccchHHHHHHHhcccCC
Confidence 000000000000 0000 00000 0
Q ss_pred ccceeeeEEEECCeEEEEE----eecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCC-CCCeEEEE
Q psy2979 145 FAISKHGLVVSGRNTIYCL----DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSC-RLDSVERY 219 (400)
Q Consensus 145 ~~~~~~~~~~~~~~~iyv~----~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~y 219 (400)
.++.. ..+.. +++. .....+..|++.+++|..+++++. +..++++++++.||++||..+.. ..+++++|
T Consensus 243 ~~~~~----~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~y 316 (534)
T PHA03098 243 LPRSS----TFGSI-IYIHITMSIFTYNYITNYSPLSEINTIIDIHY-VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSY 316 (534)
T ss_pred CcCcc----CCCcc-eEeecccchhhceeeecchhhhhcccccCccc-cccceEEEECCEEEEECCCcCCCCeeccEEEE
Confidence 00000 00111 2221 112345678888899998877664 34468888999999999987543 45789999
Q ss_pred eCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCC-cceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEE
Q psy2979 220 DPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIY 298 (400)
Q Consensus 220 d~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iy 298 (400)
|+.+++|..+++||.+|..+++++++++||++||. ++.. .+++++||+.+++|+.+++||.+|..++++.++++||
T Consensus 317 d~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~---~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iY 393 (534)
T PHA03098 317 DTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGI---YNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIY 393 (534)
T ss_pred eCCCCeeeECCCCCcccccceEEEECCEEEEEeCC---CCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEE
Confidence 99999999999999999999999999999999998 5444 7889999999999999999999999999999999999
Q ss_pred EEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCC---CCCeEEEEECCCCcEEEec
Q psy2979 299 VLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDG---YHDSIECYDVDNDSWEIMS 375 (400)
Q Consensus 299 v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~---~~~~v~~yd~~~~~W~~~~ 375 (400)
++||........+++++|||.+++|+.++++|.+|..+++++++++||++||. .... ..+.+++|||++++|+.++
T Consensus 394 v~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~-~~~~~~~~~~~v~~yd~~~~~W~~~~ 472 (534)
T PHA03098 394 VIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGI-SYIDNIKVYNIVESYNPVTNKWTELS 472 (534)
T ss_pred EECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCc-cCCCCCcccceEEEecCCCCceeeCC
Confidence 99997544332689999999999999999999999999999999999999997 3322 2467999999999999999
Q ss_pred CCCCCCCceeeEEEccccccccc
Q psy2979 376 HLPSARSWLGCVPLQIHKSQFVD 398 (400)
Q Consensus 376 ~~~~~r~~~~~~~~~~~~~~~~~ 398 (400)
.+|.+|..+++++++++.|++.|
T Consensus 473 ~~~~~r~~~~~~~~~~~iyv~GG 495 (534)
T PHA03098 473 SLNFPRINASLCIFNNKIYVVGG 495 (534)
T ss_pred CCCcccccceEEEECCEEEEEcC
Confidence 99999999999999887776543
|
|
| >KOG4693|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=236.04 Aligned_cols=260 Identities=17% Similarity=0.257 Sum_probs=215.2
Q ss_pred ceEEccCCcccceeeeEEEECCeEEEEE-----------eecCEEEEEECCCCCeEEccC-------------CCCccee
Q psy2979 136 VWKTLSCLPFAISKHGLVVSGRNTIYCL-----------DIVDIVYVAASMHKILHSLGS-------------LKFDFDV 191 (400)
Q Consensus 136 ~w~~~~~~~~~~~~~~~~~~~~~~iyv~-----------~~~~~~~~yd~~~~~w~~~~~-------------~~~~r~~ 191 (400)
.|+..-.--..|-.|+++.++.. ||.+ ...-++..+|..+-+|+++++ .|-.|++
T Consensus 3 ~WTVHLeGGPrRVNHAavaVG~r-iYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYG 81 (392)
T KOG4693|consen 3 TWTVHLEGGPRRVNHAAVAVGSR-IYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYG 81 (392)
T ss_pred eEEEEecCCcccccceeeeecce-EEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcC
Confidence 46543333346778999999999 9999 333468889999999999876 1335999
Q ss_pred eeEEEECCEEEEEcccCCC-CCCCeEEEEeCCCCceEEcc---CCCCcccccEEEEeCCEEEEEcCccccCCCC--cceE
Q psy2979 192 SGIAMLDGFVYAVGGWDGS-CRLDSVERYDPTKNEWSYIE---PMKLAVTSPAVVAHEGMLYVTGGAILEDGDG--IEQV 265 (400)
Q Consensus 192 ~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~---~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~--~~~v 265 (400)
|+++..++++|+.||.+.. ..-+.++.|||.+++|.... -+|.+|.+|++++.++.+||+||.. +... ++++
T Consensus 82 HtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye--~~a~~FS~d~ 159 (392)
T KOG4693|consen 82 HTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYE--EDAQRFSQDT 159 (392)
T ss_pred ceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChH--HHHHhhhccc
Confidence 9999999999999999874 44567899999999998763 3789999999999999999999983 2222 8899
Q ss_pred EEEeCCCCceeecc---CCCCCceeeeEEEECCeEEEEcCcCCCCCC--------CCeEEEEECCCCeEEEccC---CcC
Q psy2979 266 QRYNPKVNQWQDLA---PMLIPRSGAAICALDSCIYVLGGWHASTEN--------TNRVECYHIAENTWEYKSP---MKE 331 (400)
Q Consensus 266 ~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~--------~~~v~~yd~~~~~W~~~~~---~~~ 331 (400)
..+|..|.+|+.+. ..|.-|-.|++.++++.+||+||....... .+++..+|..|+.|...++ .|.
T Consensus 160 h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~ 239 (392)
T KOG4693|consen 160 HVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPG 239 (392)
T ss_pred eeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCC
Confidence 99999999999996 345557889999999999999997543321 5688999999999999874 578
Q ss_pred ccCcceEEEECCEEEEEcCccCCC--CCCCeEEEEECCCCcEEEec---CCCCCCCceeeEEEcccccccccC
Q psy2979 332 KRYRPGIAVIDGKIYVLGGEEGWD--GYHDSIECYDVDNDSWEIMS---HLPSARSWLGCVPLQIHKSQFVDK 399 (400)
Q Consensus 332 ~~~~~~~~~~~~~lyv~GG~~~~~--~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~~~~~~~~ 399 (400)
+|..|++.+++++||+|||+ .+. .-.+++|+|||.+..|+.+. .-|.+|..+++++.+++.++|.|-
T Consensus 240 GRRSHS~fvYng~~Y~FGGY-ng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGT 311 (392)
T KOG4693|consen 240 GRRSHSTFVYNGKMYMFGGY-NGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGT 311 (392)
T ss_pred cccccceEEEcceEEEeccc-chhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCC
Confidence 99999999999999999998 442 34689999999999999984 579999999999999999888764
|
|
| >KOG4693|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-31 Score=218.23 Aligned_cols=244 Identities=16% Similarity=0.269 Sum_probs=203.2
Q ss_pred CCCcEEEEEeccCCC-----cccceEEEEEcCCCceEEccC-------------CcccceeeeEEEECCeEEEEE-----
Q psy2979 107 GSINVIIAVGGEDDK-----VVLRSVEGFCVKTKVWKTLSC-------------LPFAISKHGLVVSGRNTIYCL----- 163 (400)
Q Consensus 107 ~~~~~i~~~gg~~~~-----~~~~~~~~yd~~~~~w~~~~~-------------~~~~~~~~~~~~~~~~~iyv~----- 163 (400)
.+..+|+-|||+.++ ...-+++++|..+-+|..+++ .|-.|.+|+++..+++ +|+-
T Consensus 21 aVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~-~yvWGGRND 99 (392)
T KOG4693|consen 21 AVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDK-AYVWGGRND 99 (392)
T ss_pred eecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcce-EEEEcCccC
Confidence 345899999997633 223478899999999998764 2445889999999999 9998
Q ss_pred --eecCEEEEEECCCCCeEEcc---CCCCcceeeeEEEECCEEEEEcccCC--CCCCCeEEEEeCCCCceEEcc---CCC
Q psy2979 164 --DIVDIVYVAASMHKILHSLG---SLKFDFDVSGIAMLDGFVYAVGGWDG--SCRLDSVERYDPTKNEWSYIE---PMK 233 (400)
Q Consensus 164 --~~~~~~~~yd~~~~~w~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~v~~yd~~~~~W~~~~---~l~ 233 (400)
..-+.+++|||.+++|.+.. -+|.+|.+|+++++++.+|++||+.. +...+++..+|..|-+|+.+. ..|
T Consensus 100 ~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~Pp 179 (392)
T KOG4693|consen 100 DEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPP 179 (392)
T ss_pred cccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCc
Confidence 34456899999999998643 46889999999999999999999864 356788999999999999985 345
Q ss_pred CcccccEEEEeCCEEEEEcCccccCCC------C-cceEEEEeCCCCceeeccC---CCCCceeeeEEEECCeEEEEcCc
Q psy2979 234 LAVTSPAVVAHEGMLYVTGGAILEDGD------G-IEQVQRYNPKVNQWQDLAP---MLIPRSGAAICALDSCIYVLGGW 303 (400)
Q Consensus 234 ~~~~~~~~~~~~~~iyv~GG~~~~~~~------~-~~~v~~yd~~~~~W~~~~~---~~~~r~~~~~~~~~~~iyv~GG~ 303 (400)
.-|..|+++++++.+||+||.....+. . .+.+..+|..|..|.+.++ .|..|..|++.+++++||++||+
T Consensus 180 rwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGY 259 (392)
T KOG4693|consen 180 RWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGY 259 (392)
T ss_pred hhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEeccc
Confidence 667889999999999999998521111 1 5678889999999999863 56889999999999999999999
Q ss_pred CCCCCC-CCeEEEEECCCCeEEEcc---CCcCccCcceEEEECCEEEEEcCc
Q psy2979 304 HASTEN-TNRVECYHIAENTWEYKS---PMKEKRYRPGIAVIDGKIYVLGGE 351 (400)
Q Consensus 304 ~~~~~~-~~~v~~yd~~~~~W~~~~---~~~~~~~~~~~~~~~~~lyv~GG~ 351 (400)
++.-.. .+++++|||.+..|+.+. ..|.+|..+++++.++++|+|||.
T Consensus 260 ng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGT 311 (392)
T KOG4693|consen 260 NGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGT 311 (392)
T ss_pred chhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCC
Confidence 875321 689999999999999986 578999999999999999999997
|
|
| >KOG0379|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-28 Score=229.03 Aligned_cols=248 Identities=18% Similarity=0.291 Sum_probs=213.1
Q ss_pred CCcccceeeeEEEECCeEEEEE------eecC--EEEEEECCCCCeEEccC---CCCcceeeeEEEECCEEEEEcccCC-
Q psy2979 142 CLPFAISKHGLVVSGRNTIYCL------DIVD--IVYVAASMHKILHSLGS---LKFDFDVSGIAMLDGFVYAVGGWDG- 209 (400)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~iyv~------~~~~--~~~~yd~~~~~w~~~~~---~~~~r~~~~~~~~~~~iyv~GG~~~- 209 (400)
..|.+|..|+++..++. +||+ .... +++.+|..+..|..... .|.+|.+++++.++++||++||.+.
T Consensus 56 ~~p~~R~~hs~~~~~~~-~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~ 134 (482)
T KOG0379|consen 56 VGPIPRAGHSAVLIGNK-LYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKK 134 (482)
T ss_pred CCcchhhccceeEECCE-EEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCC
Confidence 45788999999999999 9999 2233 59999999999987553 5688999999999999999999984
Q ss_pred CCCCCeEEEEeCCCCceEEcc---CCCCcccccEEEEeCCEEEEEcCccccCCCC--cceEEEEeCCCCceeecc---CC
Q psy2979 210 SCRLDSVERYDPTKNEWSYIE---PMKLAVTSPAVVAHEGMLYVTGGAILEDGDG--IEQVQRYNPKVNQWQDLA---PM 281 (400)
Q Consensus 210 ~~~~~~v~~yd~~~~~W~~~~---~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~--~~~v~~yd~~~~~W~~~~---~~ 281 (400)
....++++.||+.+++|..+. ..|.+|.+|+++++++++||+||. +... .+++++||+.+.+|.++. +.
T Consensus 135 ~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~---~~~~~~~ndl~i~d~~~~~W~~~~~~g~~ 211 (482)
T KOG0379|consen 135 YRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGI---GGTGDSLNDLHIYDLETSTWSELDTQGEA 211 (482)
T ss_pred CCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCc---cCcccceeeeeeeccccccceecccCCCC
Confidence 556789999999999999885 368999999999999999999999 5444 899999999999999985 67
Q ss_pred CCCceeeeEEEECCeEEEEcCcC-CCCCCCCeEEEEECCCCeEEEcc---CCcCccCcceEEEECCEEEEEcCccCCCC-
Q psy2979 282 LIPRSGAAICALDSCIYVLGGWH-ASTENTNRVECYHIAENTWEYKS---PMKEKRYRPGIAVIDGKIYVLGGEEGWDG- 356 (400)
Q Consensus 282 ~~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~~v~~yd~~~~~W~~~~---~~~~~~~~~~~~~~~~~lyv~GG~~~~~~- 356 (400)
|.||.+|++++++++++++||.+ +... .++++.+|..+.+|..+. ..|.+|.+|..++.+.+++++||......
T Consensus 212 P~pR~gH~~~~~~~~~~v~gG~~~~~~~-l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~ 290 (482)
T KOG0379|consen 212 PSPRYGHAMVVVGNKLLVFGGGDDGDVY-LNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQE 290 (482)
T ss_pred CCCCCCceEEEECCeEEEEeccccCCce-ecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCcccccc
Confidence 88999999999999999999988 4444 899999999999999765 57899999999999999999999833223
Q ss_pred CCCeEEEEECCCCcEEEecC----CCCCCCceeeEEEccccc
Q psy2979 357 YHDSIECYDVDNDSWEIMSH----LPSARSWLGCVPLQIHKS 394 (400)
Q Consensus 357 ~~~~v~~yd~~~~~W~~~~~----~~~~r~~~~~~~~~~~~~ 394 (400)
...++|.||.+++.|..+.. .|.+|..+.++.+.....
T Consensus 291 ~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (482)
T KOG0379|consen 291 PLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAELIDELGK 332 (482)
T ss_pred cccccccccccccceeeeeccccccccccccccceeeccCCc
Confidence 57899999999999999954 367888888888765443
|
|
| >KOG0379|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-27 Score=223.32 Aligned_cols=213 Identities=20% Similarity=0.343 Sum_probs=185.1
Q ss_pred CCCCcceeeeEEEECCEEEEEcccCCCCCCC--eEEEEeCCCCceEEcc---CCCCcccccEEEEeCCEEEEEcCccccC
Q psy2979 184 SLKFDFDVSGIAMLDGFVYAVGGWDGSCRLD--SVERYDPTKNEWSYIE---PMKLAVTSPAVVAHEGMLYVTGGAILED 258 (400)
Q Consensus 184 ~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~--~v~~yd~~~~~W~~~~---~l~~~~~~~~~~~~~~~iyv~GG~~~~~ 258 (400)
..|.+|..|+++.+++++||+||........ +++.+|..+..|.... ..|.+|++|.++.++++||++||. +
T Consensus 56 ~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~---~ 132 (482)
T KOG0379|consen 56 VGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGT---D 132 (482)
T ss_pred CCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccc---c
Confidence 3578899999999999999999987655444 4999999999998764 467899999999999999999999 5
Q ss_pred C-CC-cceEEEEeCCCCceeecc---CCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEcc---CCc
Q psy2979 259 G-DG-IEQVQRYNPKVNQWQDLA---PMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKS---PMK 330 (400)
Q Consensus 259 ~-~~-~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~---~~~ 330 (400)
. .. .++++.||+.+.+|..+. .+|.+|.+|+++++++++||+||.+......+++++||+++.+|.++. +.|
T Consensus 133 ~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P 212 (482)
T KOG0379|consen 133 KKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAP 212 (482)
T ss_pred CCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCC
Confidence 3 22 789999999999999886 568899999999999999999998877633899999999999999975 678
Q ss_pred CccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEec---CCCCCCCceeeEEEcccccccccC
Q psy2979 331 EKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMS---HLPSARSWLGCVPLQIHKSQFVDK 399 (400)
Q Consensus 331 ~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~~~~~~~~ 399 (400)
.+|.+|++++.+++++++||.+.+....+++|++|..+.+|+.+. .+|.+|++|..+..+++.+++-|+
T Consensus 213 ~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~ 284 (482)
T KOG0379|consen 213 SPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGG 284 (482)
T ss_pred CCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCC
Confidence 899999999999999999998436778999999999999999774 589999999999776665555544
|
|
| >KOG1230|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.9e-25 Score=191.23 Aligned_cols=232 Identities=17% Similarity=0.251 Sum_probs=186.6
Q ss_pred CCcccceeeeEEEE--CCeEEEEE----------eecCEEEEEECCCCCeEEccC--CCCcceeeeEEEE-CCEEEEEcc
Q psy2979 142 CLPFAISKHGLVVS--GRNTIYCL----------DIVDIVYVAASMHKILHSLGS--LKFDFDVSGIAML-DGFVYAVGG 206 (400)
Q Consensus 142 ~~~~~~~~~~~~~~--~~~~iyv~----------~~~~~~~~yd~~~~~w~~~~~--~~~~r~~~~~~~~-~~~iyv~GG 206 (400)
+.|++|+..++.+. .+. |+++ ...+.++.||..+++|..+.+ .|.||+.|.++++ .|.+|++||
T Consensus 62 ~~PspRsn~sl~~nPekeE-LilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGG 140 (521)
T KOG1230|consen 62 PPPSPRSNPSLFANPEKEE-LILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGG 140 (521)
T ss_pred CCCCCCCCcceeeccCcce-eEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEecc
Confidence 45677877666554 334 5555 445789999999999998654 5788999988887 489999999
Q ss_pred cCCC------CCCCeEEEEeCCCCceEEcc--CCCCcccccEEEEeCCEEEEEcCccccCCCC--cceEEEEeCCCCcee
Q psy2979 207 WDGS------CRLDSVERYDPTKNEWSYIE--PMKLAVTSPAVVAHEGMLYVTGGAILEDGDG--IEQVQRYNPKVNQWQ 276 (400)
Q Consensus 207 ~~~~------~~~~~v~~yd~~~~~W~~~~--~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~--~~~v~~yd~~~~~W~ 276 (400)
.-.. -...++|.||..+++|+++. .-|.+|++|-+++...+|+++||..-.++.. .+.+++||..+-+|+
T Consensus 141 EfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~ 220 (521)
T KOG1230|consen 141 EFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWS 220 (521)
T ss_pred ccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeee
Confidence 7532 24578999999999999984 5789999999999999999999985323333 899999999999999
Q ss_pred eccC---CCCCceeeeEEEE-CCeEEEEcCcCCCC--------CCCCeEEEEECCC-----CeEEEccC---CcCccCcc
Q psy2979 277 DLAP---MLIPRSGAAICAL-DSCIYVLGGWHAST--------ENTNRVECYHIAE-----NTWEYKSP---MKEKRYRP 336 (400)
Q Consensus 277 ~~~~---~~~~r~~~~~~~~-~~~iyv~GG~~~~~--------~~~~~v~~yd~~~-----~~W~~~~~---~~~~~~~~ 336 (400)
++.+ -|.||+++++.+. .|.||+.||+.... ...++++..+|++ -.|+.+.+ -|.+|.++
T Consensus 221 Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgf 300 (521)
T KOG1230|consen 221 KLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGF 300 (521)
T ss_pred eccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCce
Confidence 9964 4789999999999 99999999975321 1167899999988 56888864 57899999
Q ss_pred eEEEE-CCEEEEEcCccC--------CCCCCCeEEEEECCCCcEEEe
Q psy2979 337 GIAVI-DGKIYVLGGEEG--------WDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 337 ~~~~~-~~~lyv~GG~~~--------~~~~~~~v~~yd~~~~~W~~~ 374 (400)
++++. +++-+.|||..+ .....++++.||...++|.+.
T Consensus 301 sv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 301 SVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred eEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHh
Confidence 98887 679999999833 123568999999999999976
|
|
| >KOG1230|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=189.19 Aligned_cols=217 Identities=21% Similarity=0.310 Sum_probs=179.4
Q ss_pred cCCCCcceeeeEEEE--CCEEEEEcccCCC----CCCCeEEEEeCCCCceEEc--cCCCCcccccEEEEeC-CEEEEEcC
Q psy2979 183 GSLKFDFDVSGIAML--DGFVYAVGGWDGS----CRLDSVERYDPTKNEWSYI--EPMKLAVTSPAVVAHE-GMLYVTGG 253 (400)
Q Consensus 183 ~~~~~~r~~~~~~~~--~~~iyv~GG~~~~----~~~~~v~~yd~~~~~W~~~--~~l~~~~~~~~~~~~~-~~iyv~GG 253 (400)
.+.|.||.++++.+- .+.|+++||.--+ ...+++++||..+++|..+ |+-|.+|+.|.++++. |.+|++||
T Consensus 61 ~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGG 140 (521)
T KOG1230|consen 61 VPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGG 140 (521)
T ss_pred CCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEecc
Confidence 456889999988775 5689999996422 2357899999999999997 5678999999888875 89999999
Q ss_pred ccc-cCCCC---cceEEEEeCCCCceeecc--CCCCCceeeeEEEECCeEEEEcCcCCCCCC---CCeEEEEECCCCeEE
Q psy2979 254 AIL-EDGDG---IEQVQRYNPKVNQWQDLA--PMLIPRSGAAICALDSCIYVLGGWHASTEN---TNRVECYHIAENTWE 324 (400)
Q Consensus 254 ~~~-~~~~~---~~~v~~yd~~~~~W~~~~--~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~---~~~v~~yd~~~~~W~ 324 (400)
... +++.. ...+|.||..+++|+++. .-|.+|++|.+++...+|+++||+...... .++|++||..+-+|+
T Consensus 141 EfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~ 220 (521)
T KOG1230|consen 141 EFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWS 220 (521)
T ss_pred ccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeee
Confidence 853 22222 678999999999999995 678999999999999999999997554321 689999999999999
Q ss_pred EccC---CcCccCcceEEEE-CCEEEEEcCcc--------CCCCCCCeEEEEECCCC-----cEEEecC---CCCCCCce
Q psy2979 325 YKSP---MKEKRYRPGIAVI-DGKIYVLGGEE--------GWDGYHDSIECYDVDND-----SWEIMSH---LPSARSWL 384 (400)
Q Consensus 325 ~~~~---~~~~~~~~~~~~~-~~~lyv~GG~~--------~~~~~~~~v~~yd~~~~-----~W~~~~~---~~~~r~~~ 384 (400)
.+.+ -|.+|+++.+.+. +|.|||.||+. +.+....++|..+|+.+ .|..+.+ -|.||.++
T Consensus 221 Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgf 300 (521)
T KOG1230|consen 221 KLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGF 300 (521)
T ss_pred eccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCce
Confidence 9864 4789999999998 99999999982 11235678999999883 5777744 58899999
Q ss_pred eeEEEcccccccccC
Q psy2979 385 GCVPLQIHKSQFVDK 399 (400)
Q Consensus 385 ~~~~~~~~~~~~~~~ 399 (400)
++|+..+.+.+++||
T Consensus 301 sv~va~n~kal~FGG 315 (521)
T KOG1230|consen 301 SVAVAKNHKALFFGG 315 (521)
T ss_pred eEEEecCCceEEecc
Confidence 999999999999988
|
|
| >KOG4152|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=187.91 Aligned_cols=241 Identities=17% Similarity=0.306 Sum_probs=192.8
Q ss_pred CCCCcEEEEEeccCCCcccceEEEEEcCCCceEEc---cCCcccceeeeEEEECCeEEEEE-------eecCEEEEEECC
Q psy2979 106 AGSINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTL---SCLPFAISKHGLVVSGRNTIYCL-------DIVDIVYVAASM 175 (400)
Q Consensus 106 ~~~~~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~---~~~~~~~~~~~~~~~~~~~iyv~-------~~~~~~~~yd~~ 175 (400)
.-+.++|++|||-+ +...+++++||..+++|..- .++|.+...|+.+..+++ ||+| ..+++++.....
T Consensus 39 VaikELiviFGGGN-EGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtr-ilvFGGMvEYGkYsNdLYELQas 116 (830)
T KOG4152|consen 39 VAIKELIVIFGGGN-EGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTR-ILVFGGMVEYGKYSNDLYELQAS 116 (830)
T ss_pred eeeeeeEEEecCCc-ccchhhhhhhccccceeecchhcCCCCCchhhcceEecCce-EEEEccEeeeccccchHHHhhhh
Confidence 33678999999965 56778999999999999842 478888888999988888 9999 444554433333
Q ss_pred CCCeEEcc-------CCCCcceeeeEEEECCEEEEEcccCCC---------CCCCeEEEEeCCCC----ceEEc---cCC
Q psy2979 176 HKILHSLG-------SLKFDFDVSGIAMLDGFVYAVGGWDGS---------CRLDSVERYDPTKN----EWSYI---EPM 232 (400)
Q Consensus 176 ~~~w~~~~-------~~~~~r~~~~~~~~~~~iyv~GG~~~~---------~~~~~v~~yd~~~~----~W~~~---~~l 232 (400)
.=.|+++. ++|.||.+|+....+++-|+|||..++ .++++++..++.-+ -|... ..+
T Consensus 117 RWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~ 196 (830)
T KOG4152|consen 117 RWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVL 196 (830)
T ss_pred hhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCC
Confidence 33455543 367899999999999999999998532 35677887777744 48664 368
Q ss_pred CCcccccEEEEe------CCEEEEEcCccccCCCCcceEEEEeCCCCceeecc---CCCCCceeeeEEEECCeEEEEcCc
Q psy2979 233 KLAVTSPAVVAH------EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLA---PMLIPRSGAAICALDSCIYVLGGW 303 (400)
Q Consensus 233 ~~~~~~~~~~~~------~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~ 303 (400)
|.+|..|+++.+ ..++||+||. .|..+.++|..|..+.+|++.. -.|.||+.|+++.+++++|++||+
T Consensus 197 P~pRESHTAViY~eKDs~~skmvvyGGM---~G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGW 273 (830)
T KOG4152|consen 197 PPPRESHTAVIYTEKDSKKSKMVVYGGM---SGCRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGW 273 (830)
T ss_pred CCCcccceeEEEEeccCCcceEEEEccc---ccccccceeEEecceeecccccccCCCCCCcccccceeecceeEEecce
Confidence 999999999887 3589999998 7766889999999999999875 457889999999999999999996
Q ss_pred CCC--------------CCCCCeEEEEECCCCeEEEcc-------CCcCccCcceEEEECCEEEEEcCcc
Q psy2979 304 HAS--------------TENTNRVECYHIAENTWEYKS-------PMKEKRYRPGIAVIDGKIYVLGGEE 352 (400)
Q Consensus 304 ~~~--------------~~~~~~v~~yd~~~~~W~~~~-------~~~~~~~~~~~~~~~~~lyv~GG~~ 352 (400)
-.- .. .+++.+++..+..|+.+- ..|.+|.+|++++++.++|+-.|.|
T Consensus 274 VPl~~~~~~~~~hekEWkC-Tssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRD 342 (830)
T KOG4152|consen 274 VPLVMDDVKVATHEKEWKC-TSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRD 342 (830)
T ss_pred eeeeccccccccccceeee-ccceeeeeecchheeeeeeccccccccccccccceeEEeccEEEEEeccc
Confidence 321 11 578889999999998863 3688999999999999999999983
|
|
| >KOG4152|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-23 Score=185.48 Aligned_cols=259 Identities=17% Similarity=0.251 Sum_probs=201.9
Q ss_pred CceEEc----cCCcccceeeeEEEECCeEEEEE-----eecCEEEEEECCCCCeEE---ccCCCCcceeeeEEEECCEEE
Q psy2979 135 KVWKTL----SCLPFAISKHGLVVSGRNTIYCL-----DIVDIVYVAASMHKILHS---LGSLKFDFDVSGIAMLDGFVY 202 (400)
Q Consensus 135 ~~w~~~----~~~~~~~~~~~~~~~~~~~iyv~-----~~~~~~~~yd~~~~~w~~---~~~~~~~r~~~~~~~~~~~iy 202 (400)
-+|++. .+.|.+|.+|-++++... |.+| ...+++..||..+++|.. ..+.|.+-..|+.+..+.+||
T Consensus 17 ~rWrrV~~~tGPvPrpRHGHRAVaikEL-iviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtril 95 (830)
T KOG4152|consen 17 VRWRRVQQSTGPVPRPRHGHRAVAIKEL-IVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRIL 95 (830)
T ss_pred cceEEEecccCCCCCccccchheeeeee-EEEecCCcccchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEE
Confidence 368766 356788899999999888 8888 556778999999999974 345777788889998999999
Q ss_pred EEcccCCCC-CCCeEEEEeCCCCce--EEcc-------CCCCcccccEEEEeCCEEEEEcCccccCC--CC-----cceE
Q psy2979 203 AVGGWDGSC-RLDSVERYDPTKNEW--SYIE-------PMKLAVTSPAVVAHEGMLYVTGGAILEDG--DG-----IEQV 265 (400)
Q Consensus 203 v~GG~~~~~-~~~~v~~yd~~~~~W--~~~~-------~l~~~~~~~~~~~~~~~iyv~GG~~~~~~--~~-----~~~v 265 (400)
+|||..+.+ +.++ .|.++..+| ..+. +.|-+|-+|+...++++-|+|||...+.. .. ++++
T Consensus 96 vFGGMvEYGkYsNd--LYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDl 173 (830)
T KOG4152|consen 96 VFGGMVEYGKYSND--LYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDL 173 (830)
T ss_pred EEccEeeeccccch--HHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcce
Confidence 999986542 3333 456666554 4442 36679999999999999999999853111 11 7788
Q ss_pred EEEeCCCC----ceeec---cCCCCCceeeeEEEE------CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEcc---CC
Q psy2979 266 QRYNPKVN----QWQDL---APMLIPRSGAAICAL------DSCIYVLGGWHASTENTNRVECYHIAENTWEYKS---PM 329 (400)
Q Consensus 266 ~~yd~~~~----~W~~~---~~~~~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~---~~ 329 (400)
+..+..-. .|... ..+|.+|..|+++.+ ..++|++||.++-. +.++|..|.++-.|.+.. ..
T Consensus 174 Y~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~R--LgDLW~Ldl~Tl~W~kp~~~G~~ 251 (830)
T KOG4152|consen 174 YILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCR--LGDLWTLDLDTLTWNKPSLSGVA 251 (830)
T ss_pred EEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccccc--ccceeEEecceeecccccccCCC
Confidence 88877633 38765 378999999999988 34899999986644 789999999999999864 46
Q ss_pred cCccCcceEEEECCEEEEEcCcc-----CCC--------CCCCeEEEEECCCCcEEEec-------CCCCCCCceeeEEE
Q psy2979 330 KEKRYRPGIAVIDGKIYVLGGEE-----GWD--------GYHDSIECYDVDNDSWEIMS-------HLPSARSWLGCVPL 389 (400)
Q Consensus 330 ~~~~~~~~~~~~~~~lyv~GG~~-----~~~--------~~~~~v~~yd~~~~~W~~~~-------~~~~~r~~~~~~~~ 389 (400)
|.+|..|+++.+++|+|||||+- +.. .-.+++-++++.+..|..+- ..|.+|.+|+++.+
T Consensus 252 PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAi 331 (830)
T KOG4152|consen 252 PLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAI 331 (830)
T ss_pred CCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEe
Confidence 78999999999999999999971 110 12456778999999999772 37889999999999
Q ss_pred ccccccccc
Q psy2979 390 QIHKSQFVD 398 (400)
Q Consensus 390 ~~~~~~~~~ 398 (400)
+.+.|+.-|
T Consensus 332 gtRlYiWSG 340 (830)
T KOG4152|consen 332 GTRLYIWSG 340 (830)
T ss_pred ccEEEEEec
Confidence 999998654
|
|
| >COG3055 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=155.97 Aligned_cols=257 Identities=20% Similarity=0.325 Sum_probs=192.0
Q ss_pred EccCCcccceeeeEEEECCeEEEEE--eecCEEEEEECCC--CCeEEccCCC-CcceeeeEEEECCEEEEEcccCCC---
Q psy2979 139 TLSCLPFAISKHGLVVSGRNTIYCL--DIVDIVYVAASMH--KILHSLGSLK-FDFDVSGIAMLDGFVYAVGGWDGS--- 210 (400)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~iyv~--~~~~~~~~yd~~~--~~w~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~--- 210 (400)
++|++|.+-..-+-+..++. +||. +.....+..|+.. ..|++++..| .+|.....++++++||++||....
T Consensus 29 ~lPdlPvg~KnG~Ga~ig~~-~YVGLGs~G~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~ 107 (381)
T COG3055 29 QLPDLPVGFKNGAGALIGDT-VYVGLGSAGTAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSS 107 (381)
T ss_pred cCCCCCccccccccceecce-EEEEeccCCccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCC
Confidence 46788877666677777887 9998 5566777777764 5799999987 578888899999999999998532
Q ss_pred --CCCCeEEEEeCCCCceEEccC-CCCcccccEEEEeCC-EEEEEcCccc--cCCC------------------------
Q psy2979 211 --CRLDSVERYDPTKNEWSYIEP-MKLAVTSPAVVAHEG-MLYVTGGAIL--EDGD------------------------ 260 (400)
Q Consensus 211 --~~~~~v~~yd~~~~~W~~~~~-l~~~~~~~~~~~~~~-~iyv~GG~~~--~~~~------------------------ 260 (400)
...+++++|||.+++|+.+.. .|.....+.++.+++ +||++||... .++.
T Consensus 108 ~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~ 187 (381)
T COG3055 108 SPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDK 187 (381)
T ss_pred CceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCC
Confidence 346789999999999999864 677788889999888 9999999731 0100
Q ss_pred -----C-cceEEEEeCCCCceeeccCCC-CCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCC--CeEEEccCCcC
Q psy2979 261 -----G-IEQVQRYNPKVNQWQDLAPML-IPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAE--NTWEYKSPMKE 331 (400)
Q Consensus 261 -----~-~~~v~~yd~~~~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~--~~W~~~~~~~~ 331 (400)
. ...+..|||++++|+.+...| .++++++.+.-++++.++-|.-...-.+..+.+++... -+|..++++|.
T Consensus 188 ~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~ 267 (381)
T COG3055 188 KAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPA 267 (381)
T ss_pred CHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCC
Confidence 1 467899999999999998776 56677666666888999988765554366777777764 47999998886
Q ss_pred ccCcc-------eEEEECCEEEEEcCccC--------------C----CCCCCeEEEEECCCCcEEEecCCCCCCCceee
Q psy2979 332 KRYRP-------GIAVIDGKIYVLGGEEG--------------W----DGYHDSIECYDVDNDSWEIMSHLPSARSWLGC 386 (400)
Q Consensus 332 ~~~~~-------~~~~~~~~lyv~GG~~~--------------~----~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~ 386 (400)
+.... -.-..++.+.+.||..- + ....++|+.+| .+.|+.++.||.++....+
T Consensus 268 ~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l~YG~s 345 (381)
T COG3055 268 PIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQGLAYGVS 345 (381)
T ss_pred CCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCCccceEE
Confidence 54322 12234788888888620 0 12467899999 8999999999997776666
Q ss_pred EEEcccccccccC
Q psy2979 387 VPLQIHKSQFVDK 399 (400)
Q Consensus 387 ~~~~~~~~~~~~~ 399 (400)
...++ .++++||
T Consensus 346 ~~~nn-~vl~IGG 357 (381)
T COG3055 346 LSYNN-KVLLIGG 357 (381)
T ss_pred EecCC-cEEEEcc
Confidence 66555 5555555
|
|
| >COG3055 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.5e-17 Score=139.16 Aligned_cols=236 Identities=19% Similarity=0.258 Sum_probs=172.7
Q ss_pred EEEEEcCC--CceEEccCCc-ccceeeeEEEECCeEEEEE-----------eecCEEEEEECCCCCeEEccCC-CCccee
Q psy2979 127 VEGFCVKT--KVWKTLSCLP-FAISKHGLVVSGRNTIYCL-----------DIVDIVYVAASMHKILHSLGSL-KFDFDV 191 (400)
Q Consensus 127 ~~~yd~~~--~~w~~~~~~~-~~~~~~~~~~~~~~~iyv~-----------~~~~~~~~yd~~~~~w~~~~~~-~~~r~~ 191 (400)
.+..|++. ..|+++...| .+|.....++++++ ||++ ...++++.|||..++|.++... |.....
T Consensus 60 fy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~k-LyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G 138 (381)
T COG3055 60 FYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGK-LYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVG 138 (381)
T ss_pred ceehhhhcCCCCceEcccCCCcccccchheeeCCe-EEEeeccccCCCCCceEeeeeEEecCCCChhheecccccccccc
Confidence 44445443 4699999988 67888888899999 9999 4557899999999999998864 556677
Q ss_pred eeEEEECC-EEEEEcccCC----------------------------------CCCCCeEEEEeCCCCceEEccCCC-Cc
Q psy2979 192 SGIAMLDG-FVYAVGGWDG----------------------------------SCRLDSVERYDPTKNEWSYIEPMK-LA 235 (400)
Q Consensus 192 ~~~~~~~~-~iyv~GG~~~----------------------------------~~~~~~v~~yd~~~~~W~~~~~l~-~~ 235 (400)
++.+.+++ +||++||.+. ......+..|||.+++|+.+...| .+
T Consensus 139 ~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~ 218 (381)
T COG3055 139 ASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYG 218 (381)
T ss_pred ceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccC
Confidence 78888887 9999999751 012456889999999999998777 45
Q ss_pred ccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCC--CCceeeccCCCCCce-------eeeEEEECCeEEEEcCcCCC
Q psy2979 236 VTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPK--VNQWQDLAPMLIPRS-------GAAICALDSCIYVLGGWHAS 306 (400)
Q Consensus 236 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~--~~~W~~~~~~~~~r~-------~~~~~~~~~~iyv~GG~~~~ 306 (400)
+++.+.+.-++++.++-|... ++-.+..+.+++.. ..+|..++++|.+.. ++-....++.+.+.||.+-.
T Consensus 219 ~aGsa~~~~~n~~~lInGEiK-pGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~ 297 (381)
T COG3055 219 NAGSAVVIKGNKLTLINGEIK-PGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFP 297 (381)
T ss_pred ccCcceeecCCeEEEEcceec-CCccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCCh
Confidence 566555555777988988732 11115566777665 456999988775543 22233447888898885421
Q ss_pred CCC------------------CCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEEC
Q psy2979 307 TEN------------------TNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDV 366 (400)
Q Consensus 307 ~~~------------------~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~ 366 (400)
+.. .+.|+.+| ++.|+.+..+|.++.+...+..+++||++||++.+...+..|+....
T Consensus 298 Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l~YG~s~~~nn~vl~IGGE~~~Gka~~~v~~l~~ 373 (381)
T COG3055 298 GALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQGLAYGVSLSYNNKVLLIGGETSGGKATTRVYSLSW 373 (381)
T ss_pred hHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCCccceEEEecCCcEEEEccccCCCeeeeeEEEEEE
Confidence 100 46788888 99999999999988877788889999999999555555566665433
|
|
| >KOG2437|consensus | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.4e-13 Score=121.17 Aligned_cols=181 Identities=20% Similarity=0.289 Sum_probs=137.3
Q ss_pred CCcceeeeEEEECC--EEEEEcccCCCCCCCeEEEEeCCCCceEEcc---CCCCcccccEEEEeCC--EEEEEcCccccC
Q psy2979 186 KFDFDVSGIAMLDG--FVYAVGGWDGSCRLDSVERYDPTKNEWSYIE---PMKLAVTSPAVVAHEG--MLYVTGGAILED 258 (400)
Q Consensus 186 ~~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~---~l~~~~~~~~~~~~~~--~iyv~GG~~~~~ 258 (400)
|..|.+|-++...+ .||+.||+++...+.+.|.|+...++|+.+. ..|..|.+|.++..-. ++|+.|-.....
T Consensus 258 p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS 337 (723)
T KOG2437|consen 258 PGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSS 337 (723)
T ss_pred ccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccccc
Confidence 45688898888755 9999999999999999999999999999874 4789999999988655 999999764211
Q ss_pred CC---C-cceEEEEeCCCCceeecc------CCCCCceeeeEEEECCe--EEEEcCcCC--CCCCCCeEEEEECCCCeEE
Q psy2979 259 GD---G-IEQVQRYNPKVNQWQDLA------PMLIPRSGAAICALDSC--IYVLGGWHA--STENTNRVECYHIAENTWE 324 (400)
Q Consensus 259 ~~---~-~~~v~~yd~~~~~W~~~~------~~~~~r~~~~~~~~~~~--iyv~GG~~~--~~~~~~~v~~yd~~~~~W~ 324 (400)
.. . ..++|+||..++.|.-+. .-|...+.|++++.+++ ||++||..- ......-++.||.....|.
T Consensus 338 ~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~ 417 (723)
T KOG2437|consen 338 VRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWK 417 (723)
T ss_pred cccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHH
Confidence 11 1 568999999999999874 34566788999999877 999999643 2222567999999999999
Q ss_pred EccCCc----------CccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECC
Q psy2979 325 YKSPMK----------EKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVD 367 (400)
Q Consensus 325 ~~~~~~----------~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~ 367 (400)
.+..-. ..|.+|.+-.+ ++++|++||. ......+-..+||+.
T Consensus 418 ~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq-~s~~El~L~f~y~I~ 471 (723)
T KOG2437|consen 418 LLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQ-RSKTELNLFFSYDID 471 (723)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCc-ccceEEeehhcceec
Confidence 876321 24555665555 6789999997 554444445566543
|
|
| >PF13964 Kelch_6: Kelch motif | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-12 Score=83.02 Aligned_cols=49 Identities=37% Similarity=0.792 Sum_probs=45.0
Q ss_pred ccCcceEEEECCEEEEEcCccCC-CCCCCeEEEEECCCCcEEEecCCCCCC
Q psy2979 332 KRYRPGIAVIDGKIYVLGGEEGW-DGYHDSIECYDVDNDSWEIMSHLPSAR 381 (400)
Q Consensus 332 ~~~~~~~~~~~~~lyv~GG~~~~-~~~~~~v~~yd~~~~~W~~~~~~~~~r 381 (400)
+|..+++++++++|||+||. .. ....+++++||+++++|+.+++||.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~-~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGY-DNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCC-CCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 57889999999999999999 54 677899999999999999999999987
|
|
| >PF13964 Kelch_6: Kelch motif | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.7e-12 Score=82.02 Aligned_cols=49 Identities=31% Similarity=0.579 Sum_probs=45.8
Q ss_pred cceeeeEEEECCEEEEEcccCC-CCCCCeEEEEeCCCCceEEccCCCCcc
Q psy2979 188 DFDVSGIAMLDGFVYAVGGWDG-SCRLDSVERYDPTKNEWSYIEPMKLAV 236 (400)
Q Consensus 188 ~r~~~~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~l~~~~ 236 (400)
||..++++.++++|||+||..+ ....+++++||+.+++|+.+++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 6889999999999999999987 678899999999999999999999886
|
|
| >PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.7e-11 Score=75.75 Aligned_cols=46 Identities=33% Similarity=0.660 Sum_probs=42.5
Q ss_pred cceeeeEEEECCEEEEEcccCC-CCCCCeEEEEeCCCCceEEccCCC
Q psy2979 188 DFDVSGIAMLDGFVYAVGGWDG-SCRLDSVERYDPTKNEWSYIEPMK 233 (400)
Q Consensus 188 ~r~~~~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~l~ 233 (400)
||..+++++++++||++||.++ ....+++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 6899999999999999999988 678899999999999999999886
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A .... |
| >PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.5e-11 Score=74.97 Aligned_cols=47 Identities=34% Similarity=0.698 Sum_probs=41.7
Q ss_pred ccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCC
Q psy2979 332 KRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLP 378 (400)
Q Consensus 332 ~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~ 378 (400)
+|..+++++++++|||+||.+......+++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 57889999999999999999443678899999999999999999886
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A .... |
| >PF13415 Kelch_3: Galactose oxidase, central domain | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-10 Score=73.94 Aligned_cols=48 Identities=25% Similarity=0.522 Sum_probs=43.1
Q ss_pred CCEEEEEcCcc-CCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEE
Q psy2979 342 DGKIYVLGGEE-GWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPL 389 (400)
Q Consensus 342 ~~~lyv~GG~~-~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 389 (400)
+++|||+||.+ ......+++|+||+.+++|++++++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 58999999993 2566789999999999999999999999999999975
|
|
| >KOG2437|consensus | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.7e-11 Score=108.29 Aligned_cols=175 Identities=22% Similarity=0.269 Sum_probs=131.3
Q ss_pred CCCceEEccC----------CCCcccccEEEEeCC--EEEEEcCccccCCCC-cceEEEEeCCCCceeecc---CCCCCc
Q psy2979 222 TKNEWSYIEP----------MKLAVTSPAVVAHEG--MLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLA---PMLIPR 285 (400)
Q Consensus 222 ~~~~W~~~~~----------l~~~~~~~~~~~~~~--~iyv~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~---~~~~~r 285 (400)
-+-.|+++++ -|..|.+|.++...+ .||+.||. +|-. +.+.|.|+...++|+.+. ..|..|
T Consensus 237 y~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGW---dG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~R 313 (723)
T KOG2437|consen 237 YKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGW---DGTQDLADFWAYSVKENQWTCINRDTEGPGAR 313 (723)
T ss_pred ccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCc---ccchhHHHHHhhcCCcceeEEeecCCCCCcch
Confidence 3557887753 346789999988765 99999999 8887 889999999999999885 478889
Q ss_pred eeeeEEEECC--eEEEEcCcCCCCC-----CCCeEEEEECCCCeEEEcc------CCcCccCcceEEEECCE--EEEEcC
Q psy2979 286 SGAAICALDS--CIYVLGGWHASTE-----NTNRVECYHIAENTWEYKS------PMKEKRYRPGIAVIDGK--IYVLGG 350 (400)
Q Consensus 286 ~~~~~~~~~~--~iyv~GG~~~~~~-----~~~~v~~yd~~~~~W~~~~------~~~~~~~~~~~~~~~~~--lyv~GG 350 (400)
..|.++.... ++|++|-+-+... ...++|+||..++.|..+. .-|...+.|++++.+++ |||+||
T Consensus 314 sCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGG 393 (723)
T KOG2437|consen 314 SCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGG 393 (723)
T ss_pred hhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecC
Confidence 9999998744 9999996533221 1568999999999999875 24566788999999877 999999
Q ss_pred cc--CCCCCCCeEEEEECCCCcEEEecCC----------CCCCCceeeEEEcccccccccC
Q psy2979 351 EE--GWDGYHDSIECYDVDNDSWEIMSHL----------PSARSWLGCVPLQIHKSQFVDK 399 (400)
Q Consensus 351 ~~--~~~~~~~~v~~yd~~~~~W~~~~~~----------~~~r~~~~~~~~~~~~~~~~~~ 399 (400)
.. ........++.||.....|+.+..- ...|.+|++-...+....+++|
T Consensus 394 r~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fg 454 (723)
T KOG2437|consen 394 RILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFG 454 (723)
T ss_pred eeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEecc
Confidence 72 1223456799999999999987531 2245566655554444444444
|
|
| >PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.2e-10 Score=88.66 Aligned_cols=82 Identities=35% Similarity=0.538 Sum_probs=69.1
Q ss_pred HHHHHhcCceeceEEEEC-CeEEehhhHHHhhcCcccccc-----------ceeecCCCCHH---HHHHHhhhcccccC-
Q psy2979 8 FNEARKNNEFCDVTLCVD-GSKFPAHRVVLAASSPYFKVL-----------ETIRLPQLSPY---FLHDCVEQCAIIKN- 71 (400)
Q Consensus 8 l~~~r~~~~~~Dv~l~~~-~~~~~~hr~vLaa~s~yf~~m-----------~~vrl~~l~~~---~l~~~i~~~~l~~~- 71 (400)
|+++++++.++|++|.++ ++.|++||.+|++.|+||+.| ..|.++.++++ .+++++|++++...
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~ 80 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINS 80 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCCH
Confidence 789999999999999999 799999999999999999877 25778999998 57788899988776
Q ss_pred chhHHHHHHHHHhcCCCc
Q psy2979 72 NPQCAQLVEEAKLFHLLP 89 (400)
Q Consensus 72 ~~~c~~~l~~a~~~~~~~ 89 (400)
.....+++..|..+++..
T Consensus 81 ~~~~~~ll~lA~~~~~~~ 98 (111)
T PF00651_consen 81 DENVEELLELADKLQIPE 98 (111)
T ss_dssp TTTHHHHHHHHHHTTBHH
T ss_pred HHHHHHHHHHHHHhCcHH
Confidence 888999999998887544
|
The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A .... |
| >PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-09 Score=68.76 Aligned_cols=47 Identities=30% Similarity=0.630 Sum_probs=41.2
Q ss_pred ccCcceEEEECCEEEEEcCc--cCCCCCCCeEEEEECCCCcEEEecCCC
Q psy2979 332 KRYRPGIAVIDGKIYVLGGE--EGWDGYHDSIECYDVDNDSWEIMSHLP 378 (400)
Q Consensus 332 ~~~~~~~~~~~~~lyv~GG~--~~~~~~~~~v~~yd~~~~~W~~~~~~~ 378 (400)
+|..|++++++++|||+||. +......+++++||+++++|+.++.||
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 57889999999999999998 344557899999999999999998775
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding |
| >smart00612 Kelch Kelch domain | Back alignment and domain information |
|---|
Probab=98.99 E-value=7e-10 Score=69.94 Aligned_cols=47 Identities=32% Similarity=0.555 Sum_probs=42.1
Q ss_pred EEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEcc
Q psy2979 344 KIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQI 391 (400)
Q Consensus 344 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 391 (400)
+||++||. ......+++++|||.+++|+.+++||.+|..++++++++
T Consensus 1 ~iyv~GG~-~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGF-DGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCC-CCCceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 58999998 555567899999999999999999999999999998864
|
|
| >PF13415 Kelch_3: Galactose oxidase, central domain | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.8e-09 Score=68.45 Aligned_cols=47 Identities=26% Similarity=0.492 Sum_probs=42.8
Q ss_pred CCEEEEEcccC--CCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe
Q psy2979 198 DGFVYAVGGWD--GSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH 244 (400)
Q Consensus 198 ~~~iyv~GG~~--~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~ 244 (400)
+++|||+||.+ +....++++.||+.+++|++++++|.+|..|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 57999999998 567789999999999999999999999999999863
|
|
| >smart00612 Kelch Kelch domain | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.6e-09 Score=68.28 Aligned_cols=47 Identities=40% Similarity=0.744 Sum_probs=42.5
Q ss_pred EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCC
Q psy2979 200 FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEG 246 (400)
Q Consensus 200 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~ 246 (400)
+||++||..+....+++++||+.+++|+.+++||.+|..++++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 48999998876678899999999999999999999999999988764
|
|
| >PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-09 Score=69.54 Aligned_cols=48 Identities=27% Similarity=0.632 Sum_probs=30.9
Q ss_pred ccCcceEEEE-CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCC
Q psy2979 332 KRYRPGIAVI-DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPS 379 (400)
Q Consensus 332 ~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 379 (400)
+|..|+++.+ +++|||+||.+......+++|+||+++++|+++++||.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCCC
Confidence 5889999998 59999999993333578999999999999999988873
|
|
| >PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.3e-09 Score=67.17 Aligned_cols=46 Identities=28% Similarity=0.584 Sum_probs=41.2
Q ss_pred cceeeeEEEECCEEEEEccc---CCCCCCCeEEEEeCCCCceEEccCCC
Q psy2979 188 DFDVSGIAMLDGFVYAVGGW---DGSCRLDSVERYDPTKNEWSYIEPMK 233 (400)
Q Consensus 188 ~r~~~~~~~~~~~iyv~GG~---~~~~~~~~v~~yd~~~~~W~~~~~l~ 233 (400)
||..|++++++++|||+||. ......++++.||+.+++|+.++++|
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 58899999999999999999 44567889999999999999998875
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.6e-07 Score=80.27 Aligned_cols=148 Identities=14% Similarity=0.176 Sum_probs=99.3
Q ss_pred EEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCC----CceEEcc-CCCCcccccEEE
Q psy2979 168 IVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTK----NEWSYIE-PMKLAVTSPAVV 242 (400)
Q Consensus 168 ~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~----~~W~~~~-~l~~~~~~~~~~ 242 (400)
.-..||+.+++++.+......-+...+..-+|++.+.||... ....+..|+|.+ ..|.+.+ .|..+|.+.++.
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~--G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~ 124 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDND--GNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTAT 124 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCc--cccceEEEecCCCCCCCCceECcccccCCCccccce
Confidence 346799999999887654333344344445899999999864 335677788765 6798876 589999999988
Q ss_pred Ee-CCEEEEEcCccccCCCCcceEEEEeCCC-----CceeeccC----CCCCceeeeEEEECCeEEEEcCcCCCCCCCCe
Q psy2979 243 AH-EGMLYVTGGAILEDGDGIEQVQRYNPKV-----NQWQDLAP----MLIPRSGAAICALDSCIYVLGGWHASTENTNR 312 (400)
Q Consensus 243 ~~-~~~iyv~GG~~~~~~~~~~~v~~yd~~~-----~~W~~~~~----~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 312 (400)
.+ ||+++|+||. .. ...+.+.+.. ..|..+.. .+..-+-+....-+|+||+++. ..
T Consensus 125 ~L~DG~vlIvGG~---~~---~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an--------~~ 190 (243)
T PF07250_consen 125 TLPDGRVLIVGGS---NN---PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFAN--------RG 190 (243)
T ss_pred ECCCCCEEEEeCc---CC---CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEc--------CC
Confidence 76 8999999998 32 1233333311 11222221 1222222333444999999995 46
Q ss_pred EEEEECCCCeE-EEccCCcC
Q psy2979 313 VECYHIAENTW-EYKSPMKE 331 (400)
Q Consensus 313 v~~yd~~~~~W-~~~~~~~~ 331 (400)
...||+.++++ ..++.+|.
T Consensus 191 s~i~d~~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 191 SIIYDYKTNTVVRTLPDLPG 210 (243)
T ss_pred cEEEeCCCCeEEeeCCCCCC
Confidence 77889999987 78888884
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.5e-09 Score=67.21 Aligned_cols=48 Identities=33% Similarity=0.598 Sum_probs=31.1
Q ss_pred CceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcC
Q psy2979 284 PRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKE 331 (400)
Q Consensus 284 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 331 (400)
||.+|+++.+ +++||++||.+......+++++||+++++|++++++|.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCCC
Confidence 6889999998 68999999988764338999999999999999988873
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=98.75 E-value=5e-07 Score=77.22 Aligned_cols=149 Identities=20% Similarity=0.340 Sum_probs=99.5
Q ss_pred eEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCC----Cceeecc-CCCCCceeee
Q psy2979 215 SVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKV----NQWQDLA-PMLIPRSGAA 289 (400)
Q Consensus 215 ~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~----~~W~~~~-~~~~~r~~~~ 289 (400)
.-..||+.+++++.+.-....-+...+..-||.+.++||.. ++ .+.+..|+|.+ ..|.+.+ .|..+|-..+
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~--~G--~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT 122 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDN--DG--NKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPT 122 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCC--cc--ccceEEEecCCCCCCCCceECcccccCCCcccc
Confidence 34579999999988754322222223334589999999984 33 45677888876 5698886 5899999999
Q ss_pred EEEE-CCeEEEEcCcCCCCCCCCeEEEEECCC--C---eEEEccC----CcCccCcceEEEECCEEEEEcCccCCCCCCC
Q psy2979 290 ICAL-DSCIYVLGGWHASTENTNRVECYHIAE--N---TWEYKSP----MKEKRYRPGIAVIDGKIYVLGGEEGWDGYHD 359 (400)
Q Consensus 290 ~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~--~---~W~~~~~----~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~ 359 (400)
+..+ +|+++|+||... .+.+.+.+.. . .|..+.. .+...+-+....-+|+|++++..
T Consensus 123 ~~~L~DG~vlIvGG~~~-----~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~-------- 189 (243)
T PF07250_consen 123 ATTLPDGRVLIVGGSNN-----PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR-------- 189 (243)
T ss_pred ceECCCCCEEEEeCcCC-----CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC--------
Confidence 9888 889999999852 2233333321 1 2322322 12222333333449999999976
Q ss_pred eEEEEECCCCcE-EEecCCCCC
Q psy2979 360 SIECYDVDNDSW-EIMSHLPSA 380 (400)
Q Consensus 360 ~v~~yd~~~~~W-~~~~~~~~~ 380 (400)
.-.+||+.++++ +.++.+|..
T Consensus 190 ~s~i~d~~~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 190 GSIIYDYKTNTVVRTLPDLPGG 211 (243)
T ss_pred CcEEEeCCCCeEEeeCCCCCCC
Confidence 346899999987 788988873
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >TIGR01640 F_box_assoc_1 F-box protein interaction domain | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-05 Score=69.98 Aligned_cols=193 Identities=12% Similarity=0.051 Sum_probs=117.2
Q ss_pred CEEEEEECCCCCeEEccCCCCcce---e--eeEEEE---CC-EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCc-c
Q psy2979 167 DIVYVAASMHKILHSLGSLKFDFD---V--SGIAML---DG-FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLA-V 236 (400)
Q Consensus 167 ~~~~~yd~~~~~w~~~~~~~~~r~---~--~~~~~~---~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~-~ 236 (400)
..+..+||.|++|..+|+++.++. . .+.+.- +. +|..+...........+++|+..+++|+.+...+.. .
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~~~~~ 93 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPPHHP 93 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCCCCcc
Confidence 678899999999999987654211 1 111110 11 455444322222345789999999999998743321 1
Q ss_pred cccEEEEeCCEEEEEcCccccCCCC-cceEEEEeCCCCceee-ccCCCCCc----eeeeEEEECCeEEEEcCcCCCCCCC
Q psy2979 237 TSPAVVAHEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQWQD-LAPMLIPR----SGAAICALDSCIYVLGGWHASTENT 310 (400)
Q Consensus 237 ~~~~~~~~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~W~~-~~~~~~~r----~~~~~~~~~~~iyv~GG~~~~~~~~ 310 (400)
.....+.++|.+|-+... .... ...+..||..+++|.. + ++|..+ ....++.++|++.++...... . .
T Consensus 94 ~~~~~v~~~G~lyw~~~~---~~~~~~~~IvsFDl~~E~f~~~i-~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~-~-~ 167 (230)
T TIGR01640 94 LKSRGVCINGVLYYLAYT---LKTNPDYFIVSFDVSSERFKEFI-PLPCGNSDSVDYLSLINYKGKLAVLKQKKDT-N-N 167 (230)
T ss_pred ccCCeEEECCEEEEEEEE---CCCCCcEEEEEEEcccceEeeee-ecCccccccccceEEEEECCEEEEEEecCCC-C-c
Confidence 222366789999988754 2211 2379999999999995 5 334332 245677889999888754321 1 2
Q ss_pred CeEEEEE-CCCCeEEEccCCc---CccC----cceEEEECCEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 311 NRVECYH-IAENTWEYKSPMK---EKRY----RPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 311 ~~v~~yd-~~~~~W~~~~~~~---~~~~----~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
-++|..+ ...+.|++.-..+ .+.. .+..+.-+|+|++.... . ....+..||+++|
T Consensus 168 ~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~-~---~~~~~~~y~~~~~ 230 (230)
T TIGR01640 168 FDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED-E---NPFYIFYYNVGEN 230 (230)
T ss_pred EEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC-C---CceEEEEEeccCC
Confidence 4677774 4456798754332 1111 12344558888887653 1 1124889999875
|
This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. |
| >KOG4350|consensus | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.9e-08 Score=85.71 Aligned_cols=69 Identities=33% Similarity=0.516 Sum_probs=55.8
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc----------ceeecCCCCHH---HHHHHhhhccc
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL----------ETIRLPQLSPY---FLHDCVEQCAI 68 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m----------~~vrl~~l~~~---~l~~~i~~~~l 68 (400)
..+-+.|.++--+++..||+++|++.+|||||.+|||.|.||||| ..|-|+.-..+ .|+.+||++.+
T Consensus 29 ~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~ 108 (620)
T KOG4350|consen 29 NNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKI 108 (620)
T ss_pred cchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcce
Confidence 345678899999999999999999999999999999999999998 34555544444 57778888776
Q ss_pred cc
Q psy2979 69 IK 70 (400)
Q Consensus 69 ~~ 70 (400)
..
T Consensus 109 ~l 110 (620)
T KOG4350|consen 109 DL 110 (620)
T ss_pred ec
Confidence 44
|
|
| >smart00225 BTB Broad-Complex, Tramtrack and Bric a brac | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.5e-08 Score=70.14 Aligned_cols=71 Identities=39% Similarity=0.536 Sum_probs=60.9
Q ss_pred ceEEEECCeEEehhhHHHhhcCcccccc----------ceeecCCCCHH---HHHHHhhhcccccCchhHHHHHHHHHhc
Q psy2979 19 DVTLCVDGSKFPAHRVVLAASSPYFKVL----------ETIRLPQLSPY---FLHDCVEQCAIIKNNPQCAQLVEEAKLF 85 (400)
Q Consensus 19 Dv~l~~~~~~~~~hr~vLaa~s~yf~~m----------~~vrl~~l~~~---~l~~~i~~~~l~~~~~~c~~~l~~a~~~ 85 (400)
|++|.++++.|.+||.+|++.|+||+.| ..+.++..+++ .+++++|++++......+.+++..|..+
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~ 80 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLELADYL 80 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHH
Confidence 7899999999999999999999999876 35778888887 5778899999888877888999999887
Q ss_pred CCCc
Q psy2979 86 HLLP 89 (400)
Q Consensus 86 ~~~~ 89 (400)
.+..
T Consensus 81 ~~~~ 84 (90)
T smart00225 81 QIPG 84 (90)
T ss_pred CcHH
Confidence 6543
|
Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00033 Score=65.99 Aligned_cols=230 Identities=12% Similarity=0.052 Sum_probs=135.3
Q ss_pred ceEEEEEcCCCc--eEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCC--eEEccCCCC--cceeeeEEEEC
Q psy2979 125 RSVEGFCVKTKV--WKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKI--LHSLGSLKF--DFDVSGIAMLD 198 (400)
Q Consensus 125 ~~~~~yd~~~~~--w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~--w~~~~~~~~--~r~~~~~~~~~ 198 (400)
..+..+|..+++ |+.-. +.. ...+.++.++. +|+......++.+|+.+++ |+.-...+. .+...+-+..+
T Consensus 130 g~l~ald~~tG~~~W~~~~--~~~-~~ssP~v~~~~-v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~ 205 (394)
T PRK11138 130 GQVYALNAEDGEVAWQTKV--AGE-ALSRPVVSDGL-VLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAF 205 (394)
T ss_pred CEEEEEECCCCCCcccccC--CCc-eecCCEEECCE-EEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEEC
Confidence 468899998875 86432 211 12233445666 8877666789999998876 876443221 12222334456
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCC--ceEEccCCCCc--------ccccEEEEeCCEEEEEcCccccCCCCcceEEEE
Q psy2979 199 GFVYAVGGWDGSCRLDSVERYDPTKN--EWSYIEPMKLA--------VTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRY 268 (400)
Q Consensus 199 ~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~l~~~--------~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~y 268 (400)
+.+|+..+ + ..+..+|+.++ .|+.-...|.. ....+-++.++.+|+.+.. ..++++
T Consensus 206 ~~v~~~~~-~-----g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~--------g~l~al 271 (394)
T PRK11138 206 GGAIVGGD-N-----GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYN--------GNLVAL 271 (394)
T ss_pred CEEEEEcC-C-----CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcC--------CeEEEE
Confidence 77777543 2 35778888876 48653222211 0112334668999986543 368999
Q ss_pred eCCCCc--eeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCe--EEEccCCcCccCcceEEEECCE
Q psy2979 269 NPKVNQ--WQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENT--WEYKSPMKEKRYRPGIAVIDGK 344 (400)
Q Consensus 269 d~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~ 344 (400)
|+.+.+ |+.- .... ...+..++.||+... ...+.++|+.+++ |+.-. ...+...+.++.+++
T Consensus 272 d~~tG~~~W~~~--~~~~---~~~~~~~~~vy~~~~-------~g~l~ald~~tG~~~W~~~~--~~~~~~~sp~v~~g~ 337 (394)
T PRK11138 272 DLRSGQIVWKRE--YGSV---NDFAVDGGRIYLVDQ-------NDRVYALDTRGGVELWSQSD--LLHRLLTAPVLYNGY 337 (394)
T ss_pred ECCCCCEEEeec--CCCc---cCcEEECCEEEEEcC-------CCeEEEEECCCCcEEEcccc--cCCCcccCCEEECCE
Confidence 998765 8753 2211 134566899999764 4579999998764 86421 112233344567999
Q ss_pred EEEEcCccCCCCCCCeEEEEECCCCc--EEEecCCCCCCCceeeEEEcccccc
Q psy2979 345 IYVLGGEEGWDGYHDSIECYDVDNDS--WEIMSHLPSARSWLGCVPLQIHKSQ 395 (400)
Q Consensus 345 lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~~~~ 395 (400)
||+.... ..++++|+.+++ |+. .++......+-++.++++|+
T Consensus 338 l~v~~~~-------G~l~~ld~~tG~~~~~~--~~~~~~~~s~P~~~~~~l~v 381 (394)
T PRK11138 338 LVVGDSE-------GYLHWINREDGRFVAQQ--KVDSSGFLSEPVVADDKLLI 381 (394)
T ss_pred EEEEeCC-------CEEEEEECCCCCEEEEE--EcCCCcceeCCEEECCEEEE
Confidence 9886432 368899998875 544 22222234444555665443
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00036 Score=65.78 Aligned_cols=221 Identities=16% Similarity=0.216 Sum_probs=132.1
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCc--eEEccCCc--------ccceeeeEEEECCeEEEEEeecCEEEEEECCCCC-
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKV--WKTLSCLP--------FAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKI- 178 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~--w~~~~~~~--------~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~- 178 (400)
+.+++.... ..+.++|..+++ |..-..-. ......+.++.++. +|+......++.+|..+++
T Consensus 70 ~~vy~~~~~------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-v~v~~~~g~l~ald~~tG~~ 142 (394)
T PRK11138 70 NKVYAADRA------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGK-VYIGSEKGQVYALNAEDGEV 142 (394)
T ss_pred CEEEEECCC------CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCE-EEEEcCCCEEEEEECCCCCC
Confidence 555654332 368899988775 87422110 01122234556777 8887666789999998765
Q ss_pred -eEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCc--eEEccCCCC--cccccEEEEeCCEEEEEcC
Q psy2979 179 -LHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNE--WSYIEPMKL--AVTSPAVVAHEGMLYVTGG 253 (400)
Q Consensus 179 -w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~l~~--~~~~~~~~~~~~~iyv~GG 253 (400)
|+.-.+ .+ ...+-++.++.+|+..+ ...+..+|+.+++ |+.-...|. .+...+-++.++.+|+..+
T Consensus 143 ~W~~~~~--~~-~~ssP~v~~~~v~v~~~------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~ 213 (394)
T PRK11138 143 AWQTKVA--GE-ALSRPVVSDGLVLVHTS------NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGD 213 (394)
T ss_pred cccccCC--Cc-eecCCEEECCEEEEECC------CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcC
Confidence 865332 11 12223445788887543 2368999998875 876543221 1122233455777777544
Q ss_pred ccccCCCCcceEEEEeCCCCc--eeeccCCCCC--------ceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCe-
Q psy2979 254 AILEDGDGIEQVQRYNPKVNQ--WQDLAPMLIP--------RSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENT- 322 (400)
Q Consensus 254 ~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~- 322 (400)
. ..+..+|+.+.+ |+.-...+.. ....+-+..++.+|+.+. ...+.++|+.+++
T Consensus 214 ~--------g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~-------~g~l~ald~~tG~~ 278 (394)
T PRK11138 214 N--------GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY-------NGNLVALDLRSGQI 278 (394)
T ss_pred C--------CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc-------CCeEEEEECCCCCE
Confidence 3 368888887664 8743221111 011334456889998663 3579999998875
Q ss_pred -EEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCc--EEE
Q psy2979 323 -WEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS--WEI 373 (400)
Q Consensus 323 -W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~ 373 (400)
|+.-. .. ....++.+++||+.... ..++++|+++++ |+.
T Consensus 279 ~W~~~~--~~---~~~~~~~~~~vy~~~~~-------g~l~ald~~tG~~~W~~ 320 (394)
T PRK11138 279 VWKREY--GS---VNDFAVDGGRIYLVDQN-------DRVYALDTRGGVELWSQ 320 (394)
T ss_pred EEeecC--CC---ccCcEEECCEEEEEcCC-------CeEEEEECCCCcEEEcc
Confidence 87531 11 11345678999997643 468999998874 764
|
|
| >PLN02772 guanylate kinase | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.2e-06 Score=79.64 Aligned_cols=83 Identities=20% Similarity=0.251 Sum_probs=68.6
Q ss_pred CCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEcc---CCcCccCcceEEEE-CCEEEEEcCccCCCCCC
Q psy2979 283 IPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKS---PMKEKRYRPGIAVI-DGKIYVLGGEEGWDGYH 358 (400)
Q Consensus 283 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~ 358 (400)
.++..++++++++++|++||.+......+.+++||+.+++|.... ..|.+|.+|+++++ +++|+|+++- .. ..
T Consensus 23 ~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~-~~--~~ 99 (398)
T PLN02772 23 KPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKG-SA--PD 99 (398)
T ss_pred CCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCC-CC--Cc
Confidence 478889999999999999998776523789999999999998754 78899999999999 6899999864 22 23
Q ss_pred CeEEEEECCC
Q psy2979 359 DSIECYDVDN 368 (400)
Q Consensus 359 ~~v~~yd~~~ 368 (400)
+++|.....|
T Consensus 100 ~~~w~l~~~t 109 (398)
T PLN02772 100 DSIWFLEVDT 109 (398)
T ss_pred cceEEEEcCC
Confidence 7788877665
|
|
| >PLN02772 guanylate kinase | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.2e-06 Score=79.52 Aligned_cols=82 Identities=18% Similarity=0.182 Sum_probs=67.2
Q ss_pred CcccccEEEEeCCEEEEEcCccccCCCC--cceEEEEeCCCCceeecc---CCCCCceeeeEEEE-CCeEEEEcCcCCCC
Q psy2979 234 LAVTSPAVVAHEGMLYVTGGAILEDGDG--IEQVQRYNPKVNQWQDLA---PMLIPRSGAAICAL-DSCIYVLGGWHAST 307 (400)
Q Consensus 234 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~--~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~-~~~iyv~GG~~~~~ 307 (400)
.++..++++.+++++||+||. +... .+.+++||+.+.+|.... +.|.+|.+|+++++ +++|+|+++.....
T Consensus 23 ~~~~~~tav~igdk~yv~GG~---~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~ 99 (398)
T PLN02772 23 KPKNRETSVTIGDKTYVIGGN---HEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD 99 (398)
T ss_pred CCCCcceeEEECCEEEEEccc---CCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc
Confidence 477889999999999999998 4442 789999999999999775 77899999999999 68999999765443
Q ss_pred CCCCeEEEEECCCC
Q psy2979 308 ENTNRVECYHIAEN 321 (400)
Q Consensus 308 ~~~~~v~~yd~~~~ 321 (400)
.++|.....|.
T Consensus 100 ---~~~w~l~~~t~ 110 (398)
T PLN02772 100 ---DSIWFLEVDTP 110 (398)
T ss_pred ---cceEEEEcCCH
Confidence 46777766543
|
|
| >PF13854 Kelch_5: Kelch motif | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.3e-07 Score=55.17 Aligned_cols=41 Identities=24% Similarity=0.531 Sum_probs=35.1
Q ss_pred CcCccCcceEEEECCEEEEEcCccC-CCCCCCeEEEEECCCC
Q psy2979 329 MKEKRYRPGIAVIDGKIYVLGGEEG-WDGYHDSIECYDVDND 369 (400)
Q Consensus 329 ~~~~~~~~~~~~~~~~lyv~GG~~~-~~~~~~~v~~yd~~~~ 369 (400)
+|.+|..|++++++++|||+||... .....+++|+||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 4789999999999999999999931 4667899999998763
|
|
| >TIGR01640 F_box_assoc_1 F-box protein interaction domain | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.6e-05 Score=66.03 Aligned_cols=177 Identities=8% Similarity=0.095 Sum_probs=105.1
Q ss_pred CeEEEEeCCCCceEEccCCCCccccc----EEEEeCC-----EEEEEcCccccCCCC-cceEEEEeCCCCceeeccCCCC
Q psy2979 214 DSVERYDPTKNEWSYIEPMKLAVTSP----AVVAHEG-----MLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLAPMLI 283 (400)
Q Consensus 214 ~~v~~yd~~~~~W~~~~~l~~~~~~~----~~~~~~~-----~iyv~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~~~~~ 283 (400)
..+.++||.|++|..+|+.+.++... .....+. +|..+... .+.. ...++.|+..++.|+.+.+.+.
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~---~~~~~~~~~~Vys~~~~~Wr~~~~~~~ 90 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDR---SGNRNQSEHQVYTLGSNSWRTIECSPP 90 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEee---cCCCCCccEEEEEeCCCCccccccCCC
Confidence 46889999999999998654321111 1112221 44444322 1111 3578999999999999874332
Q ss_pred C-ceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEE-ccCCcCcc----CcceEEEECCEEEEEcCccCCCCC
Q psy2979 284 P-RSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEY-KSPMKEKR----YRPGIAVIDGKIYVLGGEEGWDGY 357 (400)
Q Consensus 284 ~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~~----~~~~~~~~~~~lyv~GG~~~~~~~ 357 (400)
. ......+.++|.+|-+........ ...+..||..+.+|.. ++ +|... .....+.++|+|.++... ... .
T Consensus 91 ~~~~~~~~v~~~G~lyw~~~~~~~~~-~~~IvsFDl~~E~f~~~i~-~P~~~~~~~~~~~L~~~~G~L~~v~~~-~~~-~ 166 (230)
T TIGR01640 91 HHPLKSRGVCINGVLYYLAYTLKTNP-DYFIVSFDVSSERFKEFIP-LPCGNSDSVDYLSLINYKGKLAVLKQK-KDT-N 166 (230)
T ss_pred CccccCCeEEECCEEEEEEEECCCCC-cEEEEEEEcccceEeeeee-cCccccccccceEEEEECCEEEEEEec-CCC-C
Confidence 1 112226677999998875432221 2379999999999995 54 34322 234577789999988754 211 1
Q ss_pred CCeEEEEE-CCCCcEEEecCCCC---CCC---ceeeEEEcccccccc
Q psy2979 358 HDSIECYD-VDNDSWEIMSHLPS---ARS---WLGCVPLQIHKSQFV 397 (400)
Q Consensus 358 ~~~v~~yd-~~~~~W~~~~~~~~---~r~---~~~~~~~~~~~~~~~ 397 (400)
.-+||+.+ -....|++.-.++. +.. .....+++++.+++.
T Consensus 167 ~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~ 213 (230)
T TIGR01640 167 NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLC 213 (230)
T ss_pred cEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEE
Confidence 25788875 44567998754432 211 123455566666554
|
This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0021 Score=60.19 Aligned_cols=229 Identities=13% Similarity=0.058 Sum_probs=130.2
Q ss_pred ceEEEEEcCCCc--eEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCC--eEEccCCCC--cceeeeEEEEC
Q psy2979 125 RSVEGFCVKTKV--WKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKI--LHSLGSLKF--DFDVSGIAMLD 198 (400)
Q Consensus 125 ~~~~~yd~~~~~--w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~--w~~~~~~~~--~r~~~~~~~~~ 198 (400)
..+..+|+.+++ |..-. +.. ...+.++.++. +|+......++.+|+.+++ |+.....+. .+...+.+..+
T Consensus 115 g~l~ald~~tG~~~W~~~~--~~~-~~~~p~v~~~~-v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~ 190 (377)
T TIGR03300 115 GEVIALDAEDGKELWRAKL--SSE-VLSPPLVANGL-VVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIAD 190 (377)
T ss_pred CEEEEEECCCCcEeeeecc--Cce-eecCCEEECCE-EEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEEC
Confidence 478899988775 76432 211 11223344666 7776666779999998765 765433221 12223334456
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCC--ceEEccCCCCcc--------cccEEEEeCCEEEEEcCccccCCCCcceEEEE
Q psy2979 199 GFVYAVGGWDGSCRLDSVERYDPTKN--EWSYIEPMKLAV--------TSPAVVAHEGMLYVTGGAILEDGDGIEQVQRY 268 (400)
Q Consensus 199 ~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~l~~~~--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~y 268 (400)
+.+|+ |..+ ..+..+|+.++ .|+.-...+... ...+.+..++.+|+.+.. ..+++|
T Consensus 191 ~~v~~-~~~~-----g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~--------g~l~a~ 256 (377)
T TIGR03300 191 GGVLV-GFAG-----GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ--------GRVAAL 256 (377)
T ss_pred CEEEE-ECCC-----CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC--------CEEEEE
Confidence 66654 3322 35888998876 476432222111 122334568888886543 368999
Q ss_pred eCCCCc--eeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCC--eEEEccCCcCccCcceEEEECCE
Q psy2979 269 NPKVNQ--WQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAEN--TWEYKSPMKEKRYRPGIAVIDGK 344 (400)
Q Consensus 269 d~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~ 344 (400)
|+.+.+ |+.-. + .....+..++.||+... ...+.++|..++ .|+.-. +. .+...+.+..+++
T Consensus 257 d~~tG~~~W~~~~--~---~~~~p~~~~~~vyv~~~-------~G~l~~~d~~tG~~~W~~~~-~~-~~~~ssp~i~g~~ 322 (377)
T TIGR03300 257 DLRSGRVLWKRDA--S---SYQGPAVDDNRLYVTDA-------DGVVVALDRRSGSELWKNDE-LK-YRQLTAPAVVGGY 322 (377)
T ss_pred ECCCCcEEEeecc--C---CccCceEeCCEEEEECC-------CCeEEEEECCCCcEEEcccc-cc-CCccccCEEECCE
Confidence 987654 76531 1 12234456889998753 457999999776 486521 11 1122233446888
Q ss_pred EEEEcCccCCCCCCCeEEEEECCCCc--EEEecCCCCCCCceeeEEEccccc
Q psy2979 345 IYVLGGEEGWDGYHDSIECYDVDNDS--WEIMSHLPSARSWLGCVPLQIHKS 394 (400)
Q Consensus 345 lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~~~ 394 (400)
||+.... ..++++|+.+++ |+. +++......+-++.+++.|
T Consensus 323 l~~~~~~-------G~l~~~d~~tG~~~~~~--~~~~~~~~~sp~~~~~~l~ 365 (377)
T TIGR03300 323 LVVGDFE-------GYLHWLSREDGSFVARL--KTDGSGIASPPVVVGDGLL 365 (377)
T ss_pred EEEEeCC-------CEEEEEECCCCCEEEEE--EcCCCccccCCEEECCEEE
Confidence 8875422 468999998774 432 2233234455566666544
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF13854 Kelch_5: Kelch motif | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.3e-06 Score=53.09 Aligned_cols=40 Identities=13% Similarity=0.174 Sum_probs=35.0
Q ss_pred CCCcceeeeEEEECCEEEEEcccCC--CCCCCeEEEEeCCCC
Q psy2979 185 LKFDFDVSGIAMLDGFVYAVGGWDG--SCRLDSVERYDPTKN 224 (400)
Q Consensus 185 ~~~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~v~~yd~~~~ 224 (400)
+|.+|..|+++.++++||++||.+. ....+++++||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 4789999999999999999999984 567889999998763
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.0017 Score=56.43 Aligned_cols=210 Identities=18% Similarity=0.219 Sum_probs=125.9
Q ss_pred ceEEEEEcCCCc--eEEccCCcccc-eeee-EEEECCeEEEEEeecCEEEEEECCCCC--eEEccCCCCcceeeeEEEEC
Q psy2979 125 RSVEGFCVKTKV--WKTLSCLPFAI-SKHG-LVVSGRNTIYCLDIVDIVYVAASMHKI--LHSLGSLKFDFDVSGIAMLD 198 (400)
Q Consensus 125 ~~~~~yd~~~~~--w~~~~~~~~~~-~~~~-~~~~~~~~iyv~~~~~~~~~yd~~~~~--w~~~~~~~~~r~~~~~~~~~ 198 (400)
..+.++|+.+++ |.. .+.... .... .+..++. +|+......++++|+.+++ |+.-. +.+-.. .....+
T Consensus 3 g~l~~~d~~tG~~~W~~--~~~~~~~~~~~~~~~~~~~-v~~~~~~~~l~~~d~~tG~~~W~~~~--~~~~~~-~~~~~~ 76 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSY--DLGPGIGGPVATAVPDGGR-VYVASGDGNLYALDAKTGKVLWRFDL--PGPISG-APVVDG 76 (238)
T ss_dssp SEEEEEETTTTEEEEEE--ECSSSCSSEEETEEEETTE-EEEEETTSEEEEEETTTSEEEEEEEC--SSCGGS-GEEEET
T ss_pred CEEEEEECCCCCEEEEE--ECCCCCCCccceEEEeCCE-EEEEcCCCEEEEEECCCCCEEEEeec--cccccc-eeeecc
Confidence 356788988875 775 222111 1221 3335666 8888888899999998876 65433 222111 136678
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCC--ceE-EccCCCC--cccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCC
Q psy2979 199 GFVYAVGGWDGSCRLDSVERYDPTKN--EWS-YIEPMKL--AVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVN 273 (400)
Q Consensus 199 ~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~-~~~~l~~--~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 273 (400)
+.+|+..+ ...+..+|..++ .|+ .....+. .......+..++.+|+.... ..+..+|+.+.
T Consensus 77 ~~v~v~~~------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~l~~~d~~tG 142 (238)
T PF13360_consen 77 GRVYVGTS------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSS--------GKLVALDPKTG 142 (238)
T ss_dssp TEEEEEET------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETC--------SEEEEEETTTT
T ss_pred cccccccc------eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEecc--------CcEEEEecCCC
Confidence 89988763 137999998877 588 4433222 22334455557777776532 37999999877
Q ss_pred c--eeeccCCCCCc--------eeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCe--EEEccCCcCccCcceEEEE
Q psy2979 274 Q--WQDLAPMLIPR--------SGAAICALDSCIYVLGGWHASTENTNRVECYHIAENT--WEYKSPMKEKRYRPGIAVI 341 (400)
Q Consensus 274 ~--W~~~~~~~~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~ 341 (400)
+ |+.-...+... .....+..++.+|+..+. ..+..+|..+++ |+.. ... ........
T Consensus 143 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-------g~~~~~d~~tg~~~w~~~--~~~--~~~~~~~~ 211 (238)
T PF13360_consen 143 KLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGD-------GRVVAVDLATGEKLWSKP--ISG--IYSLPSVD 211 (238)
T ss_dssp EEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCT-------SSEEEEETTTTEEEEEEC--SS---ECECEECC
T ss_pred cEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCC-------CeEEEEECCCCCEEEEec--CCC--ccCCceee
Confidence 6 77644443211 123334446788888764 235666999997 8443 111 11113444
Q ss_pred CCEEEEEcCccCCCCCCCeEEEEECCCCc--EE
Q psy2979 342 DGKIYVLGGEEGWDGYHDSIECYDVDNDS--WE 372 (400)
Q Consensus 342 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~ 372 (400)
++.||+.. . ...++++|+++++ |+
T Consensus 212 ~~~l~~~~-~------~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 212 GGTLYVTS-S------DGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp CTEEEEEE-T------TTEEEEEETTTTEEEEE
T ss_pred CCEEEEEe-C------CCEEEEEECCCCCEEeE
Confidence 78888876 3 2579999999985 64
|
... |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0044 Score=58.03 Aligned_cols=209 Identities=16% Similarity=0.213 Sum_probs=122.3
Q ss_pred ceEEEEEcCCCc--eEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCC--eEEccCCCCcceeeeEEEECCE
Q psy2979 125 RSVEGFCVKTKV--WKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKI--LHSLGSLKFDFDVSGIAMLDGF 200 (400)
Q Consensus 125 ~~~~~yd~~~~~--w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~--w~~~~~~~~~r~~~~~~~~~~~ 200 (400)
..+.++|+.+++ |..-. +.. ...+.++.++. +|+......++.+|+.+++ |+.... .. ...+.+..++.
T Consensus 75 g~v~a~d~~tG~~~W~~~~--~~~-~~~~p~v~~~~-v~v~~~~g~l~ald~~tG~~~W~~~~~--~~-~~~~p~v~~~~ 147 (377)
T TIGR03300 75 GTVVALDAETGKRLWRVDL--DER-LSGGVGADGGL-VFVGTEKGEVIALDAEDGKELWRAKLS--SE-VLSPPLVANGL 147 (377)
T ss_pred CeEEEEEccCCcEeeeecC--CCC-cccceEEcCCE-EEEEcCCCEEEEEECCCCcEeeeeccC--ce-eecCCEEECCE
Confidence 368899988876 76422 211 11233444566 8877666789999997765 764322 11 12223345778
Q ss_pred EEEEcccCCCCCCCeEEEEeCCCC--ceEEccCCCC--cccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCc--
Q psy2979 201 VYAVGGWDGSCRLDSVERYDPTKN--EWSYIEPMKL--AVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ-- 274 (400)
Q Consensus 201 iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~l~~--~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~-- 274 (400)
+|+..+ ...+..+|+.++ .|+.-..-+. .+...+.+..++.+|+ |.. + ..+..+|+.+.+
T Consensus 148 v~v~~~------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~-~~~---~----g~v~ald~~tG~~~ 213 (377)
T TIGR03300 148 VVVRTN------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV-GFA---G----GKLVALDLQTGQPL 213 (377)
T ss_pred EEEECC------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE-ECC---C----CEEEEEEccCCCEe
Confidence 877543 245889999876 4765432221 1222334556776654 333 2 368899987654
Q ss_pred eeeccCCCCCc--------eeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCe--EEEccCCcCccCcceEEEECCE
Q psy2979 275 WQDLAPMLIPR--------SGAAICALDSCIYVLGGWHASTENTNRVECYHIAENT--WEYKSPMKEKRYRPGIAVIDGK 344 (400)
Q Consensus 275 W~~~~~~~~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~ 344 (400)
|+.-...+... .....+..++.+|+.+. ...+.+||+++++ |..-. + .....++.+++
T Consensus 214 W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~-------~g~l~a~d~~tG~~~W~~~~--~---~~~~p~~~~~~ 281 (377)
T TIGR03300 214 WEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY-------QGRVAALDLRSGRVLWKRDA--S---SYQGPAVDDNR 281 (377)
T ss_pred eeeccccCCCCCchhhhhccCCccEEECCEEEEEEc-------CCEEEEEECCCCcEEEeecc--C---CccCceEeCCE
Confidence 86432222111 12233455888888653 3579999998764 76531 1 12234456899
Q ss_pred EEEEcCccCCCCCCCeEEEEECCCC--cEEE
Q psy2979 345 IYVLGGEEGWDGYHDSIECYDVDND--SWEI 373 (400)
Q Consensus 345 lyv~GG~~~~~~~~~~v~~yd~~~~--~W~~ 373 (400)
||+.... ..++++|+.++ .|+.
T Consensus 282 vyv~~~~-------G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 282 LYVTDAD-------GVVVALDRRSGSELWKN 305 (377)
T ss_pred EEEECCC-------CeEEEEECCCCcEEEcc
Confidence 9987542 46899999876 4765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00078 Score=59.01 Aligned_cols=202 Identities=18% Similarity=0.259 Sum_probs=114.1
Q ss_pred CCeEEEEE-eecCEEEEEECCCCCeEEccCCCCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCC
Q psy2979 156 GRNTIYCL-DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPM 232 (400)
Q Consensus 156 ~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l 232 (400)
++. +|++ .....++.+|+.+++-....... ..+++.. ++.+|+... .....+|+.+++++.+...
T Consensus 11 ~g~-l~~~D~~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~~~-------~~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 11 DGR-LYWVDIPGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVADS-------GGIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp TTE-EEEEETTTTEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEEEET-------TCEEEEETTTTEEEEEEEE
T ss_pred CCE-EEEEEcCCCEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEEEEc-------CceEEEecCCCcEEEEeec
Confidence 345 7777 34678999999988765433322 2333333 678888754 3356779999999888665
Q ss_pred C-----CcccccEEEEeCCEEEEEcCccccCCCC-c--ceEEEEeCCCCceeecc-CCCCCceeeeEEEE-CC-eEEEEc
Q psy2979 233 K-----LAVTSPAVVAHEGMLYVTGGAILEDGDG-I--EQVQRYNPKVNQWQDLA-PMLIPRSGAAICAL-DS-CIYVLG 301 (400)
Q Consensus 233 ~-----~~~~~~~~~~~~~~iyv~GG~~~~~~~~-~--~~v~~yd~~~~~W~~~~-~~~~~r~~~~~~~~-~~-~iyv~G 301 (400)
+ ..+.+-.++.-+|.+|+..-.. .... . ..++++++. .+.+.+. .+..| .+++.. ++ .+|+..
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~--~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p---NGi~~s~dg~~lyv~d 152 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGG--GGASGIDPGSVYRIDPD-GKVTVVADGLGFP---NGIAFSPDGKTLYVAD 152 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECC--BCTTCGGSEEEEEEETT-SEEEEEEEEESSE---EEEEEETTSSEEEEEE
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCC--CccccccccceEEECCC-CeEEEEecCcccc---cceEECCcchheeecc
Confidence 3 2333333444578899874331 1111 2 579999998 6655553 22222 233333 44 577765
Q ss_pred CcCCCCCCCCeEEEEECCCC--eEEE---ccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEe
Q psy2979 302 GWHASTENTNRVECYHIAEN--TWEY---KSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 302 G~~~~~~~~~~v~~yd~~~~--~W~~---~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 374 (400)
-. ...+++|++... .+.. +..++.....+-..++ +|+||+..-. ...|++|||....-..+
T Consensus 153 s~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~------~~~I~~~~p~G~~~~~i 220 (246)
T PF08450_consen 153 SF------NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG------GGRIVVFDPDGKLLREI 220 (246)
T ss_dssp TT------TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET------TTEEEEEETTSCEEEEE
T ss_pred cc------cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC------CCEEEEECCCccEEEEE
Confidence 43 568999998633 2332 2223322222333333 6899997321 24799999996655555
Q ss_pred cCCCCCCCceeeEEEc
Q psy2979 375 SHLPSARSWLGCVPLQ 390 (400)
Q Consensus 375 ~~~~~~r~~~~~~~~~ 390 (400)
. +|.+ ....+..+
T Consensus 221 ~-~p~~--~~t~~~fg 233 (246)
T PF08450_consen 221 E-LPVP--RPTNCAFG 233 (246)
T ss_dssp E--SSS--SEEEEEEE
T ss_pred c-CCCC--CEEEEEEE
Confidence 3 5533 44455553
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG2075|consensus | Back alignment and domain information |
|---|
Probab=97.80 E-value=3.3e-05 Score=70.39 Aligned_cols=83 Identities=23% Similarity=0.298 Sum_probs=72.9
Q ss_pred hHHHHHHHHHhcCceeceEEEECC-----eEEehhhHHHhhcCcccccc----------ceeecCCCCHH---HHHHHhh
Q psy2979 3 MVLTGFNEARKNNEFCDVTLCVDG-----SKFPAHRVVLAASSPYFKVL----------ETIRLPQLSPY---FLHDCVE 64 (400)
Q Consensus 3 ~~l~~l~~~r~~~~~~Dv~l~~~~-----~~~~~hr~vLaa~s~yf~~m----------~~vrl~~l~~~---~l~~~i~ 64 (400)
.+.++.-.+..++..+|+...|++ +.|||||-|||..|.=|.+| ..|++|.+.+. .++.++|
T Consensus 100 t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~flY 179 (521)
T KOG2075|consen 100 TMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAFLRFLY 179 (521)
T ss_pred hHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhHHHHHHHh
Confidence 467778888899999999998873 68999999999999999998 47999999998 6778999
Q ss_pred hcccccCchhHHHHHHHHHhc
Q psy2979 65 QCAIIKNNPQCAQLVEEAKLF 85 (400)
Q Consensus 65 ~~~l~~~~~~c~~~l~~a~~~ 85 (400)
+++.....++|..++..|.+|
T Consensus 180 sdev~~~~dtvi~tl~~AkKY 200 (521)
T KOG2075|consen 180 SDEVKLAADTVITTLYAAKKY 200 (521)
T ss_pred cchhhhhHHHHHHHHHHHHHh
Confidence 999988888998888888776
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.022 Score=49.37 Aligned_cols=174 Identities=16% Similarity=0.237 Sum_probs=103.0
Q ss_pred CEEEEEECCCCC--eEEccCCCCcceeee--EEEECCEEEEEcccCCCCCCCeEEEEeCCCCc--eEEccCCCCcccccE
Q psy2979 167 DIVYVAASMHKI--LHSLGSLKFDFDVSG--IAMLDGFVYAVGGWDGSCRLDSVERYDPTKNE--WSYIEPMKLAVTSPA 240 (400)
Q Consensus 167 ~~~~~yd~~~~~--w~~~~~~~~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~l~~~~~~~~ 240 (400)
..+..+|+.+++ |+.-. ..+..... .+..++.+|+..+ ...+.++|+.+++ |+.-. +.+....
T Consensus 3 g~l~~~d~~tG~~~W~~~~--~~~~~~~~~~~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~--~~~~~~~- 71 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDL--GPGIGGPVATAVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDL--PGPISGA- 71 (238)
T ss_dssp SEEEEEETTTTEEEEEEEC--SSSCSSEEETEEEETTEEEEEET------TSEEEEEETTTSEEEEEEEC--SSCGGSG-
T ss_pred CEEEEEECCCCCEEEEEEC--CCCCCCccceEEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeec--cccccce-
Confidence 346677776654 65522 11122222 3346889998743 3579999998875 65543 3332222
Q ss_pred EEEeCCEEEEEcCccccCCCCcceEEEEeCCCCc--ee-eccCCCC-C-ceeeeEEEECCeEEEEcCcCCCCCCCCeEEE
Q psy2979 241 VVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ--WQ-DLAPMLI-P-RSGAAICALDSCIYVLGGWHASTENTNRVEC 315 (400)
Q Consensus 241 ~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~--W~-~~~~~~~-~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 315 (400)
....++.+|+..+. +.++++|..+.+ |+ .....+. + .........++.+|+... ...+..
T Consensus 72 ~~~~~~~v~v~~~~--------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~l~~ 136 (238)
T PF13360_consen 72 PVVDGGRVYVGTSD--------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-------SGKLVA 136 (238)
T ss_dssp EEEETTEEEEEETT--------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-------CSEEEE
T ss_pred eeecccccccccce--------eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec-------cCcEEE
Confidence 47789999988643 379999976665 98 4433222 2 233334444677766653 458999
Q ss_pred EECCCCe--EEEccCCcCccC--------cceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCc--EEE
Q psy2979 316 YHIAENT--WEYKSPMKEKRY--------RPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS--WEI 373 (400)
Q Consensus 316 yd~~~~~--W~~~~~~~~~~~--------~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~ 373 (400)
+|+.+++ |+.-...+.... ....+..++.+|+..+. . .+..+|..+++ |+.
T Consensus 137 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g------~~~~~d~~tg~~~w~~ 199 (238)
T PF13360_consen 137 LDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGD-G------RVVAVDLATGEKLWSK 199 (238)
T ss_dssp EETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCT-S------SEEEEETTTTEEEEEE
T ss_pred EecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCC-C------eEEEEECCCCCEEEEe
Confidence 9999885 776444432211 12233336899998865 2 25666999987 844
|
... |
| >PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0019 Score=59.23 Aligned_cols=122 Identities=14% Similarity=0.216 Sum_probs=85.0
Q ss_pred eCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCC----CeEEEE--E
Q psy2979 244 HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENT----NRVECY--H 317 (400)
Q Consensus 244 ~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~----~~v~~y--d 317 (400)
.+++|+.++.. .....||+.+..-...|.++.+.....++.++++||++.......... ..++.+ +
T Consensus 75 ~gskIv~~d~~--------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~ 146 (342)
T PF07893_consen 75 HGSKIVAVDQS--------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYR 146 (342)
T ss_pred cCCeEEEEcCC--------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccc
Confidence 58899988665 248999999999998888888777778888899999998764432200 144444 4
Q ss_pred C--------CCCeEEEccCCcCccC-------cceEEEE-CCEEEE-EcCccCCCCCCCeEEEEECCCCcEEEecC--CC
Q psy2979 318 I--------AENTWEYKSPMKEKRY-------RPGIAVI-DGKIYV-LGGEEGWDGYHDSIECYDVDNDSWEIMSH--LP 378 (400)
Q Consensus 318 ~--------~~~~W~~~~~~~~~~~-------~~~~~~~-~~~lyv-~GG~~~~~~~~~~v~~yd~~~~~W~~~~~--~~ 378 (400)
+ ..-.|+.+++.|.... -.+-+++ +..|+| +-|. . ...+.||.++.+|+.+++ ||
T Consensus 147 ~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~-~-----~GTysfDt~~~~W~~~GdW~LP 220 (342)
T PF07893_consen 147 PPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGR-R-----WGTYSFDTESHEWRKHGDWMLP 220 (342)
T ss_pred cccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCC-c-----eEEEEEEcCCcceeeccceecC
Confidence 2 2236889888775443 2334455 667888 4332 1 347999999999999975 55
Q ss_pred C
Q psy2979 379 S 379 (400)
Q Consensus 379 ~ 379 (400)
.
T Consensus 221 F 221 (342)
T PF07893_consen 221 F 221 (342)
T ss_pred c
Confidence 4
|
|
| >PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0027 Score=58.22 Aligned_cols=121 Identities=12% Similarity=0.155 Sum_probs=83.0
Q ss_pred EEEECCeEEEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCC-----eEEEE--eC---
Q psy2979 152 LVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLD-----SVERY--DP--- 221 (400)
Q Consensus 152 ~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~-----~v~~y--d~--- 221 (400)
+++.+++ |+.+.....+..||..+..-...|.|..+.....++.++++||++.......... .+|.+ ++
T Consensus 72 ~al~gsk-Iv~~d~~~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~ 150 (342)
T PF07893_consen 72 FALHGSK-IVAVDQSGRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPD 150 (342)
T ss_pred EEecCCe-EEEEcCCCCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccc
Confidence 3445777 8888666779999999999988888887777777777899999998764322111 44444 42
Q ss_pred -----CCCceEEccCCCCcccc-------cEEEEe-CCEEEE-EcCccccCCCCcceEEEEeCCCCceeeccC
Q psy2979 222 -----TKNEWSYIEPMKLAVTS-------PAVVAH-EGMLYV-TGGAILEDGDGIEQVQRYNPKVNQWQDLAP 280 (400)
Q Consensus 222 -----~~~~W~~~~~l~~~~~~-------~~~~~~-~~~iyv-~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~ 280 (400)
..=.|+.+|+.|..... .+-+++ +..|+| +.|. ....+.||..+.+|+++.+
T Consensus 151 ~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~-------~~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 151 DPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGR-------RWGTYSFDTESHEWRKHGD 216 (342)
T ss_pred cccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCC-------ceEEEEEEcCCcceeeccc
Confidence 12268888876643332 233455 778888 3332 1258999999999999984
|
|
| >PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0066 Score=52.13 Aligned_cols=164 Identities=14% Similarity=0.122 Sum_probs=92.3
Q ss_pred ccCCCCcceeeeEEEE--CC--EEEEEcccCCC--------------CCCCeEEEEeCCCCceEE--ccCCCCcccccEE
Q psy2979 182 LGSLKFDFDVSGIAML--DG--FVYAVGGWDGS--------------CRLDSVERYDPTKNEWSY--IEPMKLAVTSPAV 241 (400)
Q Consensus 182 ~~~~~~~r~~~~~~~~--~~--~iyv~GG~~~~--------------~~~~~v~~yd~~~~~W~~--~~~l~~~~~~~~~ 241 (400)
...+|.+|++|++.++ .| ...++||..-. .....|+..|+.-+..+. +|.+....+.|.+
T Consensus 81 vGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvs 160 (337)
T PF03089_consen 81 VGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVS 160 (337)
T ss_pred cCCCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEE
Confidence 4678999999998887 22 46788997521 234567788888876643 5778888999999
Q ss_pred EEeCCEEEEEcCccccCCCCcceEEEEeCC---CCceeeccCCCCCceeeeEEE--E-CCeEEEEcCcCCCCCC---C--
Q psy2979 242 VAHEGMLYVTGGAILEDGDGIEQVQRYNPK---VNQWQDLAPMLIPRSGAAICA--L-DSCIYVLGGWHASTEN---T-- 310 (400)
Q Consensus 242 ~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~---~~~W~~~~~~~~~r~~~~~~~--~-~~~iyv~GG~~~~~~~---~-- 310 (400)
..-++.+|++||...........+++.... ..-+-...-++...+..++.+ . .+...|+||+...... .
T Consensus 161 lar~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~vsC~vl~~glSisSAIvt~~~~~e~iIlGGY~sdsQKRm~C~~ 240 (337)
T PF03089_consen 161 LARNDCVYILGGHSLESDSRPPRLYRLKVDLLLGSPAVSCTVLQGGLSISSAIVTQTGPHEYIILGGYQSDSQKRMECNT 240 (337)
T ss_pred EecCceEEEEccEEccCCCCCCcEEEEEEeecCCCceeEEEECCCCceEeeeeEeecCCCceEEEecccccceeeeeeeE
Confidence 999999999999854222113334443211 111111112233333222222 2 4577888997544321 0
Q ss_pred -----CeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEE
Q psy2979 311 -----NRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYV 347 (400)
Q Consensus 311 -----~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv 347 (400)
+.+..-..+.-.|+ ++....|.+++...-+|.+++
T Consensus 241 V~Ldd~~I~ie~~E~P~Wt--~dI~hSrtWFGgs~G~G~~Li 280 (337)
T PF03089_consen 241 VSLDDDGIHIEEREPPEWT--GDIKHSRTWFGGSMGKGSALI 280 (337)
T ss_pred EEEeCCceEeccCCCCCCC--CCcCcCccccccccCCceEEE
Confidence 11111112222343 133455667776666666544
|
V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0018 Score=55.85 Aligned_cols=160 Identities=17% Similarity=0.193 Sum_probs=104.9
Q ss_pred eeeeEEE-ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEE
Q psy2979 190 DVSGIAM-LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRY 268 (400)
Q Consensus 190 ~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~y 268 (400)
.-.++.. -++.+|..-|..+. +.+.+||+.+++-....++|....+-+++.++++||.+-=. ......|
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~---S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk-------~~~~f~y 115 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQ---SSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWK-------EGTGFVY 115 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTE---EEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESS-------SSEEEEE
T ss_pred cCccEEecCCCEEEEeCCCCCc---EEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEec-------CCeEEEE
Confidence 3345555 57899998887653 67889999999887778899888888999999999998544 3478999
Q ss_pred eCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCc------ceEEEEC
Q psy2979 269 NPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYR------PGIAVID 342 (400)
Q Consensus 269 d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~------~~~~~~~ 342 (400)
|+.+ .+.+...+.+..+.+++.-+..+++..| ++.++..||.+-+=. ....+...+ --+-.++
T Consensus 116 d~~t--l~~~~~~~y~~EGWGLt~dg~~Li~SDG-------S~~L~~~dP~~f~~~--~~i~V~~~g~pv~~LNELE~i~ 184 (264)
T PF05096_consen 116 DPNT--LKKIGTFPYPGEGWGLTSDGKRLIMSDG-------SSRLYFLDPETFKEV--RTIQVTDNGRPVSNLNELEYIN 184 (264)
T ss_dssp ETTT--TEEEEEEE-SSS--EEEECSSCEEEE-S-------SSEEEEE-TTT-SEE--EEEE-EETTEE---EEEEEEET
T ss_pred cccc--ceEEEEEecCCcceEEEcCCCEEEEECC-------ccceEEECCcccceE--EEEEEEECCEECCCcEeEEEEc
Confidence 9865 5666666666788899988889999988 678999999865322 111111111 1133346
Q ss_pred CEEEEEcCccCCCCCCCeEEEEECCCCc---EEEecC
Q psy2979 343 GKIYVLGGEEGWDGYHDSIECYDVDNDS---WEIMSH 376 (400)
Q Consensus 343 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~---W~~~~~ 376 (400)
|+||.=-= ..+.|.+.||+++. |-.+..
T Consensus 185 G~IyANVW------~td~I~~Idp~tG~V~~~iDls~ 215 (264)
T PF05096_consen 185 GKIYANVW------QTDRIVRIDPETGKVVGWIDLSG 215 (264)
T ss_dssp TEEEEEET------TSSEEEEEETTT-BEEEEEE-HH
T ss_pred CEEEEEeC------CCCeEEEEeCCCCeEEEEEEhhH
Confidence 77665332 35789999999985 555543
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0098 Score=51.10 Aligned_cols=150 Identities=13% Similarity=0.090 Sum_probs=85.3
Q ss_pred EEEEcCccccCCCC-cceEEEEeCC--C-Cc-----e---eeccCCCCCceeeeEEEE----CCeEEEEcCcCCC---CC
Q psy2979 248 LYVTGGAILEDGDG-IEQVQRYNPK--V-NQ-----W---QDLAPMLIPRSGAAICAL----DSCIYVLGGWHAS---TE 308 (400)
Q Consensus 248 iyv~GG~~~~~~~~-~~~v~~yd~~--~-~~-----W---~~~~~~~~~r~~~~~~~~----~~~iyv~GG~~~~---~~ 308 (400)
-.|-||.+ .... +.+++..... . |+ . .-+.+.|.+|++|++-++ +....++||..-. ..
T Consensus 41 YlIHGGrT--PNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qR 118 (337)
T PF03089_consen 41 YLIHGGRT--PNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQR 118 (337)
T ss_pred EEecCCcC--CCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCcccc
Confidence 34557774 2222 5566655332 2 22 1 223588999999998777 3367888985321 11
Q ss_pred C----------CCeEEEEECCCCeEEE--ccCCcCccCcceEEEECCEEEEEcCccCC-CCCCCeEEEEECC---CCcEE
Q psy2979 309 N----------TNRVECYHIAENTWEY--KSPMKEKRYRPGIAVIDGKIYVLGGEEGW-DGYHDSIECYDVD---NDSWE 372 (400)
Q Consensus 309 ~----------~~~v~~yd~~~~~W~~--~~~~~~~~~~~~~~~~~~~lyv~GG~~~~-~~~~~~v~~yd~~---~~~W~ 372 (400)
+ ...|+.+|++-+.++. ++.+..+...|.+.+-++.+|++||..-. +.....+++...+ ..-+-
T Consensus 119 TTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~v 198 (337)
T PF03089_consen 119 TTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLLLGSPAV 198 (337)
T ss_pred chhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEeecCCCcee
Confidence 0 3467788887776654 55666777888888889999999998211 1222344443221 11122
Q ss_pred EecCCCCCCCc--eeeEEEcccccccccC
Q psy2979 373 IMSHLPSARSW--LGCVPLQIHKSQFVDK 399 (400)
Q Consensus 373 ~~~~~~~~r~~--~~~~~~~~~~~~~~~~ 399 (400)
....++.+..- +-++-++...++++||
T Consensus 199 sC~vl~~glSisSAIvt~~~~~e~iIlGG 227 (337)
T PF03089_consen 199 SCTVLQGGLSISSAIVTQTGPHEYIILGG 227 (337)
T ss_pred EEEECCCCceEeeeeEeecCCCceEEEec
Confidence 22223443332 2334446667777776
|
V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.051 Score=46.77 Aligned_cols=235 Identities=14% Similarity=0.125 Sum_probs=136.1
Q ss_pred cceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCC-CCcceeeeEEEE--CC
Q psy2979 124 LRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSL-KFDFDVSGIAML--DG 199 (400)
Q Consensus 124 ~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~-~~~r~~~~~~~~--~~ 199 (400)
...+-..||.+++-.+.+ ++..-.-|++++- ++. .++.+....+.++|+++...++.+-. ..+-.+.-..++ .+
T Consensus 82 ~gaiGhLdP~tGev~~yp-Lg~Ga~Phgiv~gpdg~-~Witd~~~aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G 159 (353)
T COG4257 82 TGAIGHLDPATGEVETYP-LGSGASPHGIVVGPDGS-AWITDTGLAIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWG 159 (353)
T ss_pred cccceecCCCCCceEEEe-cCCCCCCceEEECCCCC-eeEecCcceeEEecCcccceEEeecccccCCCcccceeeCCCc
Confidence 345667889998876644 4555555666665 445 78876666899999988877765532 223333444445 45
Q ss_pred EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCccccc-EEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeec
Q psy2979 200 FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSP-AVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDL 278 (400)
Q Consensus 200 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~-~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~ 278 (400)
.++..|-.... -+.||.++.-+..+. |..-.-+ -++.-+|.+|+..=. -+.+-+.||.+..=+.+
T Consensus 160 ~lWFt~q~G~y------GrLdPa~~~i~vfpa-PqG~gpyGi~atpdGsvwyasla-------gnaiaridp~~~~aev~ 225 (353)
T COG4257 160 NLWFTGQIGAY------GRLDPARNVISVFPA-PQGGGPYGICATPDGSVWYASLA-------GNAIARIDPFAGHAEVV 225 (353)
T ss_pred cEEEeeccccc------eecCcccCceeeecc-CCCCCCcceEECCCCcEEEEecc-------ccceEEcccccCCccee
Confidence 77776542211 156777665444332 2222223 344568888887322 13578888887755555
Q ss_pred cCCCCC-ceeeeEEE--ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCcc-CcceEEEE-CCEEEEEcCccC
Q psy2979 279 APMLIP-RSGAAICA--LDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKR-YRPGIAVI-DGKIYVLGGEEG 353 (400)
Q Consensus 279 ~~~~~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~-~~~~~~~~-~~~lyv~GG~~~ 353 (400)
+. |.+ .....-+- --+++++.-=. ...+.+|||.+.+|.+-+ +|... ...++-+- .|++++---
T Consensus 226 p~-P~~~~~gsRriwsdpig~~wittwg------~g~l~rfdPs~~sW~eyp-LPgs~arpys~rVD~~grVW~sea--- 294 (353)
T COG4257 226 PQ-PNALKAGSRRIWSDPIGRAWITTWG------TGSLHRFDPSVTSWIEYP-LPGSKARPYSMRVDRHGRVWLSEA--- 294 (353)
T ss_pred cC-CCcccccccccccCccCcEEEeccC------CceeeEeCcccccceeee-CCCCCCCcceeeeccCCcEEeecc---
Confidence 43 322 22111111 24566665211 568999999999999864 33222 22222222 466666321
Q ss_pred CCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEcc
Q psy2979 354 WDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQI 391 (400)
Q Consensus 354 ~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 391 (400)
..+.+.+|||++.+.+.+ |.+|-..+...+++
T Consensus 295 ---~agai~rfdpeta~ftv~---p~pr~n~gn~ql~g 326 (353)
T COG4257 295 ---DAGAIGRFDPETARFTVL---PIPRPNSGNIQLDG 326 (353)
T ss_pred ---ccCceeecCcccceEEEe---cCCCCCCCceeccC
Confidence 245789999999988875 55555555555543
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.085 Score=47.16 Aligned_cols=249 Identities=13% Similarity=0.066 Sum_probs=114.2
Q ss_pred EEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEE-eecCEEEEEECCCCCeEE-ccCCCCc
Q psy2979 112 IIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCL-DIVDIVYVAASMHKILHS-LGSLKFD 188 (400)
Q Consensus 112 i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~-~~~~~~~~yd~~~~~w~~-~~~~~~~ 188 (400)
+++.++.+ ..+..+|+.+++-...-.... . ..+++.. ++..+|+. ...+.+..||..+++... ++....+
T Consensus 3 ~~~s~~~d-----~~v~~~d~~t~~~~~~~~~~~-~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 75 (300)
T TIGR03866 3 AYVSNEKD-----NTISVIDTATLEVTRTFPVGQ-R-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDP 75 (300)
T ss_pred EEEEecCC-----CEEEEEECCCCceEEEEECCC-C-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCc
Confidence 45555443 478888887765432211111 1 1223332 33325555 345678899988876543 2221122
Q ss_pred ceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEE-EeCCEEEEEcCccccCCCCcceE
Q psy2979 189 FDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVV-AHEGMLYVTGGAILEDGDGIEQV 265 (400)
Q Consensus 189 r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~v 265 (400)
+ .++.. ++.+|+.++.+ ..+..||+.+.+- +..++......+++ .-++.+++++.. ++ +.+
T Consensus 76 ~---~~~~~~~g~~l~~~~~~~-----~~l~~~d~~~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~---~~---~~~ 139 (300)
T TIGR03866 76 E---LFALHPNGKILYIANEDD-----NLVTVIDIETRKV--LAEIPVGVEPEGMAVSPDGKIVVNTSE---TT---NMA 139 (300)
T ss_pred c---EEEECCCCCEEEEEcCCC-----CeEEEEECCCCeE--EeEeeCCCCcceEEECCCCCEEEEEec---CC---CeE
Confidence 1 12222 34577665432 3688899887642 22222111112232 236666666554 22 245
Q ss_pred EEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEE-cc----CCcCccCcceEEE
Q psy2979 266 QRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEY-KS----PMKEKRYRPGIAV 340 (400)
Q Consensus 266 ~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~----~~~~~~~~~~~~~ 340 (400)
..||..+..-........ +..+....-+++.+++++.. ...+..||..+.+... +. ..+........+.
T Consensus 140 ~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~-----~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 213 (300)
T TIGR03866 140 HFIDTKTYEIVDNVLVDQ-RPRFAEFTADGKELWVSSEI-----GGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIK 213 (300)
T ss_pred EEEeCCCCeEEEEEEcCC-CccEEEECCCCCEEEEEcCC-----CCEEEEEEcCcceeeeeeeecccccccccCCccceE
Confidence 667876554322111111 11122223355544444321 3578899998765422 11 1111111111222
Q ss_pred E--CC-EEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEcccccccc
Q psy2979 341 I--DG-KIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQIHKSQFV 397 (400)
Q Consensus 341 ~--~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~ 397 (400)
+ ++ .+|+..+. .+.+.+||..+ |+.+..........+++...+..++++
T Consensus 214 ~s~dg~~~~~~~~~------~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~g~~l~~ 265 (300)
T TIGR03866 214 LTKDGKTAFVALGP------ANRVAVVDAKT--YEVLDYLLVGQRVWQLAFTPDEKYLLT 265 (300)
T ss_pred ECCCCCEEEEEcCC------CCeEEEEECCC--CcEEEEEEeCCCcceEEECCCCCEEEE
Confidence 2 34 45665443 24688999865 344333222333334444444444443
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.089 Score=45.96 Aligned_cols=198 Identities=15% Similarity=0.184 Sum_probs=109.0
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEE--CCeEEEEEeecCEEEEEECCCCCeEEccCCC-----CcceeeeEEEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVS--GRNTIYCLDIVDIVYVAASMHKILHSLGSLK-----FDFDVSGIAML 197 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~--~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~-----~~r~~~~~~~~ 197 (400)
..++.+++.+++-..+. ++. ..+++.. ++. +|+... .....+|+.+++++.+...+ ..+.+-.++.-
T Consensus 22 ~~i~~~~~~~~~~~~~~-~~~---~~G~~~~~~~g~-l~v~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~ 95 (246)
T PF08450_consen 22 GRIYRVDPDTGEVEVID-LPG---PNGMAFDRPDGR-LYVADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP 95 (246)
T ss_dssp TEEEEEETTTTEEEEEE-SSS---EEEEEEECTTSE-EEEEET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T
T ss_pred CEEEEEECCCCeEEEEe-cCC---CceEEEEccCCE-EEEEEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC
Confidence 57889999887655432 222 3344554 455 777643 44566699999998877653 22333344444
Q ss_pred CCEEEEEcccCC-CCCC--CeEEEEeCCCCceEEcc-CCCCcccccEEEE-e-CCEEEEEcCccccCCCCcceEEEEeCC
Q psy2979 198 DGFVYAVGGWDG-SCRL--DSVERYDPTKNEWSYIE-PMKLAVTSPAVVA-H-EGMLYVTGGAILEDGDGIEQVQRYNPK 271 (400)
Q Consensus 198 ~~~iyv~GG~~~-~~~~--~~v~~yd~~~~~W~~~~-~l~~~~~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~v~~yd~~ 271 (400)
++.+|+..-... .... ..++++++. ++.+.+. .+..+ .+.+. - ++.+|+.-.. ...+++|+..
T Consensus 96 ~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p---NGi~~s~dg~~lyv~ds~-------~~~i~~~~~~ 164 (246)
T PF08450_consen 96 DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFP---NGIAFSPDGKTLYVADSF-------NGRIWRFDLD 164 (246)
T ss_dssp TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSE---EEEEEETTSSEEEEEETT-------TTEEEEEEEE
T ss_pred CCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccc---cceEECCcchheeecccc-------cceeEEEecc
Confidence 788888532211 1111 569999999 6655543 22211 23333 2 3468886544 3579999886
Q ss_pred CCc--eee---ccCCCCCc-eeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE---
Q psy2979 272 VNQ--WQD---LAPMLIPR-SGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--- 341 (400)
Q Consensus 272 ~~~--W~~---~~~~~~~r-~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--- 341 (400)
... +.. +..++... .--++++- +|.||+..-. ...|.+|||....-..+. +|.. ..+.+++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~------~~~I~~~~p~G~~~~~i~-~p~~--~~t~~~fgg~ 235 (246)
T PF08450_consen 165 ADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG------GGRIVVFDPDGKLLREIE-LPVP--RPTNCAFGGP 235 (246)
T ss_dssp TTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET------TTEEEEEETTSCEEEEEE--SSS--SEEEEEEEST
T ss_pred ccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC------CCEEEEECCCccEEEEEc-CCCC--CEEEEEEECC
Confidence 433 332 22333322 12233333 7899998422 468999999955554443 4432 4555555
Q ss_pred -CCEEEEE
Q psy2979 342 -DGKIYVL 348 (400)
Q Consensus 342 -~~~lyv~ 348 (400)
.+.|||.
T Consensus 236 ~~~~L~vT 243 (246)
T PF08450_consen 236 DGKTLYVT 243 (246)
T ss_dssp TSSEEEEE
T ss_pred CCCEEEEE
Confidence 2567775
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0044 Score=54.72 Aligned_cols=109 Identities=14% Similarity=0.214 Sum_probs=70.0
Q ss_pred cceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCC-----cCccCc
Q psy2979 262 IEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPM-----KEKRYR 335 (400)
Q Consensus 262 ~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~-----~~~~~~ 335 (400)
...+..||+.+.+|..+..-... .-..+.-. ++++|+.|-..-.......+..||..+++|+.++.- |.+...
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEE
Confidence 67899999999999998654222 22333333 678887775544431267899999999999988762 333221
Q ss_pred ceEEEE-CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecC
Q psy2979 336 PGIAVI-DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSH 376 (400)
Q Consensus 336 ~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 376 (400)
.....- ..++++.|.. ......+..|| ..+|..+..
T Consensus 94 ~~~~~~d~~~~~~aG~~---~~g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRS---ANGSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred EEeeccCCceEEEecee---cCCCceEEEEc--CCceEeccc
Confidence 112212 3467777764 22345677786 678999865
|
|
| >KOG4591|consensus | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00043 Score=55.74 Aligned_cols=86 Identities=23% Similarity=0.254 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHhcCceeceEEEEC---CeEEehhhHHHhhcCcccccc-------ceeecCCCCHH---HHHHHhhhccc
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVD---GSKFPAHRVVLAASSPYFKVL-------ETIRLPQLSPY---FLHDCVEQCAI 68 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~---~~~~~~hr~vLaa~s~yf~~m-------~~vrl~~l~~~---~l~~~i~~~~l 68 (400)
+.+|.--.++.+.+.|.|+++.+. ++.+|+||-||||.|++...- +..-+...+++ ..+..|||+++
T Consensus 51 SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~WkfaN~~dekse~~~~dDad~Ea~~t~iRWIYTDEi 130 (280)
T KOG4591|consen 51 SRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWKFANGGDEKSEELDLDDADFEAFHTAIRWIYTDEI 130 (280)
T ss_pred HHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhhhccCCCcchhhhcccccCHHHHHHhheeeecccc
Confidence 356677788999999999999997 688999999999999976432 23345556665 45567888877
Q ss_pred ccCc--hhHHHHHHHHHhcCC
Q psy2979 69 IKNN--PQCAQLVEEAKLFHL 87 (400)
Q Consensus 69 ~~~~--~~c~~~l~~a~~~~~ 87 (400)
-... ....++.+.|.+||+
T Consensus 131 dfk~dD~~L~el~e~An~FqL 151 (280)
T KOG4591|consen 131 DFKEDDEFLLELCELANRFQL 151 (280)
T ss_pred ccccchHHHHHHHHHHHHHHH
Confidence 4433 333456666666653
|
|
| >smart00284 OLF Olfactomedin-like domains | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.17 Score=43.85 Aligned_cols=185 Identities=13% Similarity=0.045 Sum_probs=105.8
Q ss_pred CCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEe----CCCCceEEccCCCCcccccEEEEeCCEEEE
Q psy2979 175 MHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYD----PTKNEWSYIEPMKLAVTSPAVVAHEGMLYV 250 (400)
Q Consensus 175 ~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd----~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv 250 (400)
.-+.|.+-+..+.+. ++++|++.+.. ...+.+..|. ...+++...-.||.+-.+.+.++.+|.+|.
T Consensus 19 ~~GaWmkD~~~~~~~--------~~~~wv~~~~~--~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY 88 (255)
T smart00284 19 KSGAWMKDPLWNTTK--------KSLYWYMPLNT--RVLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYF 88 (255)
T ss_pred ccceeecCCCCCCCC--------CceEEEEcccc--CCCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEE
Confidence 346676655443322 36888886643 1124455553 334444444457877888889999999998
Q ss_pred EcCccccCCCCcceEEEEeCCCCceeeccCCCCCc----e--------eeeEEEECCeEEEEcCcCCCCCCCCeEEEEEC
Q psy2979 251 TGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPR----S--------GAAICALDSCIYVLGGWHASTENTNRVECYHI 318 (400)
Q Consensus 251 ~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r----~--------~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~ 318 (400)
--.. +..+.+||..+.+-.....+|.+. . ..-.++-++-|+++=....... .-.+.+.||
T Consensus 89 ~~~~-------s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g-~ivvSkLnp 160 (255)
T smart00284 89 NKFN-------SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAG-KIVISKLNP 160 (255)
T ss_pred EecC-------CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCC-CEEEEeeCc
Confidence 6554 468999999999876554454321 1 1233444566666633322222 335567888
Q ss_pred CCCeEEEccCCcCcc-CcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCC
Q psy2979 319 AENTWEYKSPMKEKR-YRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSA 380 (400)
Q Consensus 319 ~~~~W~~~~~~~~~~-~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~ 380 (400)
.+-.-++.=..+.++ ....+.++-|.||++-.. ......-.+.||..+++=. ...+|.+
T Consensus 161 ~tL~ve~tW~T~~~k~sa~naFmvCGvLY~~~s~--~~~~~~I~yayDt~t~~~~-~~~i~f~ 220 (255)
T smart00284 161 ATLTIENTWITTYNKRSASNAFMICGILYVTRSL--GSKGEKVFYAYDTNTGKEG-HLDIPFE 220 (255)
T ss_pred ccceEEEEEEcCCCcccccccEEEeeEEEEEccC--CCCCcEEEEEEECCCCccc-eeeeeec
Confidence 655422211223333 333466778999999632 1122344678999987633 3444443
|
|
| >cd00094 HX Hemopexin-like repeats | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.14 Score=42.87 Aligned_cols=145 Identities=16% Similarity=0.132 Sum_probs=79.0
Q ss_pred eEEEECCEEEEEcccCCCCCCCeEEEEeCCCCc--eEEc----cCCCCcccccEEEEe-CCEEEEEcCccccCCCCcceE
Q psy2979 193 GIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNE--WSYI----EPMKLAVTSPAVVAH-EGMLYVTGGAILEDGDGIEQV 265 (400)
Q Consensus 193 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~----~~l~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~v 265 (400)
++...++.+|++-| ..+++++..... -..+ +.+|.. -..+.... ++++|++-|. ..
T Consensus 11 A~~~~~g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~w~~~p~~-IDAa~~~~~~~~~yfFkg~---------~y 73 (194)
T cd00094 11 AVTTLRGELYFFKG-------RYFWRLSPGKPPGSPFLISSFWPSLPSP-VDAAFERPDTGKIYFFKGD---------KY 73 (194)
T ss_pred eEEEeCCEEEEEeC-------CEEEEEeCCCCCCCCeEhhhhCCCCCCC-ccEEEEECCCCEEEEECCC---------EE
Confidence 34445689999977 457777764211 1111 223321 22222222 3899999876 68
Q ss_pred EEEeCCCCceee---cc--CCCC-CceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEc-----cC-Cc-
Q psy2979 266 QRYNPKVNQWQD---LA--PMLI-PRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEYK-----SP-MK- 330 (400)
Q Consensus 266 ~~yd~~~~~W~~---~~--~~~~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~-----~~-~~- 330 (400)
|+||..+..+.. +. .++. +..--++... ++++|++.|. ..++||..+++...- .. .+
T Consensus 74 w~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~--------~y~ry~~~~~~v~~~yP~~i~~~w~g 145 (194)
T cd00094 74 WVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD--------KYWRYDEKTQKMDPGYPKLIETDFPG 145 (194)
T ss_pred EEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC--------EEEEEeCCCccccCCCCcchhhcCCC
Confidence 999876422211 11 1111 1111223333 6899999874 789998766553211 10 11
Q ss_pred CccCcceEEEE-CCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 331 EKRYRPGIAVI-DGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 331 ~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
.+...-++... ++++|++-|. ..++||..+.+
T Consensus 146 ~p~~idaa~~~~~~~~yfF~g~--------~y~~~d~~~~~ 178 (194)
T cd00094 146 VPDKVDAAFRWLDGYYYFFKGD--------QYWRFDPRSKE 178 (194)
T ss_pred cCCCcceeEEeCCCcEEEEECC--------EEEEEeCccce
Confidence 11112223333 4899999886 78999998775
|
; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.33 Score=44.55 Aligned_cols=233 Identities=14% Similarity=0.144 Sum_probs=118.8
Q ss_pred CceEEcc-CCccc-ceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCC-CCcceeeeEEEE-CCEEEEEcccCCC
Q psy2979 135 KVWKTLS-CLPFA-ISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSL-KFDFDVSGIAML-DGFVYAVGGWDGS 210 (400)
Q Consensus 135 ~~w~~~~-~~~~~-~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~-~~~r~~~~~~~~-~~~iyv~GG~~~~ 210 (400)
..|.+.. .+|.. ....++...++. .|++.....++.=+-.-.+|+.+... ..+...+.+..+ ++.+|+.|..
T Consensus 76 ~tW~~~~~~~~~~~~~l~~v~~~~~~-~~~~G~~g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~--- 151 (334)
T PRK13684 76 ETWEERSLDLPEENFRLISISFKGDE-GWIVGQPSLLLHTTDGGKNWTRIPLSEKLPGSPYLITALGPGTAEMATNV--- 151 (334)
T ss_pred CCceECccCCcccccceeeeEEcCCc-EEEeCCCceEEEECCCCCCCeEccCCcCCCCCceEEEEECCCcceeeecc---
Confidence 4688764 23222 122334444555 66654334444443345689988632 122222333333 3445655432
Q ss_pred CCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEE-eCCCCceeeccCCCCCceeee
Q psy2979 211 CRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRY-NPKVNQWQDLAPMLIPRSGAA 289 (400)
Q Consensus 211 ~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~y-d~~~~~W~~~~~~~~~r~~~~ 289 (400)
..+++=+-.-++|+.+..-.. -.-+.+....+..|++.|. .+ .++.- |....+|+.+.. +..+...+
T Consensus 152 ---G~i~~S~DgG~tW~~~~~~~~-g~~~~i~~~~~g~~v~~g~---~G----~i~~s~~~gg~tW~~~~~-~~~~~l~~ 219 (334)
T PRK13684 152 ---GAIYRTTDGGKNWEALVEDAA-GVVRNLRRSPDGKYVAVSS---RG----NFYSTWEPGQTAWTPHQR-NSSRRLQS 219 (334)
T ss_pred ---ceEEEECCCCCCceeCcCCCc-ceEEEEEECCCCeEEEEeC---Cc----eEEEEcCCCCCeEEEeeC-CCccccee
Confidence 235554555679998754332 2233444444444444443 22 34443 455568998853 44444455
Q ss_pred EEEE-CCeEEEEcCcCCCCCCCCeEEEEE-C-CCCeEEEccCCcCc--cC-cceEEEE-CCEEEEEcCccCCCCCCCeEE
Q psy2979 290 ICAL-DSCIYVLGGWHASTENTNRVECYH-I-AENTWEYKSPMKEK--RY-RPGIAVI-DGKIYVLGGEEGWDGYHDSIE 362 (400)
Q Consensus 290 ~~~~-~~~iyv~GG~~~~~~~~~~v~~yd-~-~~~~W~~~~~~~~~--~~-~~~~~~~-~~~lyv~GG~~~~~~~~~~v~ 362 (400)
++.. ++.++++|.. -...+. . .-..|+.+.. |.. .. .+++... ++.++++|.. ..++
T Consensus 220 i~~~~~g~~~~vg~~--------G~~~~~s~d~G~sW~~~~~-~~~~~~~~l~~v~~~~~~~~~~~G~~-------G~v~ 283 (334)
T PRK13684 220 MGFQPDGNLWMLARG--------GQIRFNDPDDLESWSKPII-PEITNGYGYLDLAYRTPGEIWAGGGN-------GTLL 283 (334)
T ss_pred eeEcCCCCEEEEecC--------CEEEEccCCCCCccccccC-CccccccceeeEEEcCCCCEEEEcCC-------CeEE
Confidence 5444 6788888742 223342 2 3347987542 211 11 2223222 6788888764 2344
Q ss_pred EEECCCCcEEEecC-CCCCCCceeeEEEcccccccccC
Q psy2979 363 CYDVDNDSWEIMSH-LPSARSWLGCVPLQIHKSQFVDK 399 (400)
Q Consensus 363 ~yd~~~~~W~~~~~-~~~~r~~~~~~~~~~~~~~~~~~ 399 (400)
.-.....+|+.++. -..+.....++..++...+.+|.
T Consensus 284 ~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 284 VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECC
Confidence 43444568999753 22334566777777766666654
|
|
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.11 Score=45.19 Aligned_cols=165 Identities=13% Similarity=0.142 Sum_probs=101.7
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeC-----CCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCC
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDP-----TKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKV 272 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~-----~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~ 272 (400)
.+++|++.|..+. .+..|.. ..++....-.||.+-.+.+.++.||.+|---.. ++.+.+||..+
T Consensus 30 ~~~iy~~~~~~~~----~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~~-------s~~IvkydL~t 98 (250)
T PF02191_consen 30 SEKIYVTSGFSGN----TVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKYN-------SRNIVKYDLTT 98 (250)
T ss_pred CCCEEEECccCCC----EEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEecC-------CceEEEEECcC
Confidence 4689999887654 4555532 333444444577777788888999999876544 57899999998
Q ss_pred CceeeccCCCCCce------------eeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCC----eEEEccCCcCccCcc
Q psy2979 273 NQWQDLAPMLIPRS------------GAAICALDSCIYVLGGWHASTENTNRVECYHIAEN----TWEYKSPMKEKRYRP 336 (400)
Q Consensus 273 ~~W~~~~~~~~~r~------------~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~----~W~~~~~~~~~~~~~ 336 (400)
..-..-..+|.+.. ..-.++-++.|+++-....... .-.+-+.||.+- .|.. ..+. +...
T Consensus 99 ~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g-~ivvskld~~tL~v~~tw~T--~~~k-~~~~ 174 (250)
T PF02191_consen 99 RSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG-NIVVSKLDPETLSVEQTWNT--SYPK-RSAG 174 (250)
T ss_pred CcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC-cEEEEeeCcccCceEEEEEe--ccCc-hhhc
Confidence 87553333332221 2334455677787765544433 346777788654 4653 2332 2333
Q ss_pred eEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCC
Q psy2979 337 GIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSA 380 (400)
Q Consensus 337 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~ 380 (400)
.+.++.|.||++... .... ..-.+.||..+++=+. ..++.+
T Consensus 175 naFmvCGvLY~~~s~-~~~~-~~I~yafDt~t~~~~~-~~i~f~ 215 (250)
T PF02191_consen 175 NAFMVCGVLYATDSY-DTRD-TEIFYAFDTYTGKEED-VSIPFP 215 (250)
T ss_pred ceeeEeeEEEEEEEC-CCCC-cEEEEEEECCCCceec-eeeeec
Confidence 466778999999876 3222 3455789999887554 334443
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.35 Score=44.27 Aligned_cols=248 Identities=12% Similarity=0.094 Sum_probs=112.3
Q ss_pred ceEEEEEcCC-CceEEccCCcccceeeeEEEE-CCeEEEEE-eecCEEEEEECC-CCCeEEccCCCCcceeeeEEEE-CC
Q psy2979 125 RSVEGFCVKT-KVWKTLSCLPFAISKHGLVVS-GRNTIYCL-DIVDIVYVAASM-HKILHSLGSLKFDFDVSGIAML-DG 199 (400)
Q Consensus 125 ~~~~~yd~~~-~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~-~~~~~~~~yd~~-~~~w~~~~~~~~~r~~~~~~~~-~~ 199 (400)
..+..||..+ +++..+..++.....+.++.. +++.+|+. .....+..|+.. .+++......+.+..-..++.. ++
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g 91 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQG 91 (330)
T ss_pred CCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCC
Confidence 4567777653 466655444433223334333 33337776 334667667765 4556554433322121222222 34
Q ss_pred -EEEEEcccCCCCCCCeEEEEeCCCCc--eEEccCCCCcccccEEEEe--CCEEEEEcCccccCCCCcceEEEEeCCCCc
Q psy2979 200 -FVYAVGGWDGSCRLDSVERYDPTKNE--WSYIEPMKLAVTSPAVVAH--EGMLYVTGGAILEDGDGIEQVQRYNPKVNQ 274 (400)
Q Consensus 200 -~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~l~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 274 (400)
.+|+..-. ...+..||..++. ...+..++.....|.++.. ++.+|+..-. .+.+..||..++.
T Consensus 92 ~~l~v~~~~-----~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~-------~~~v~v~d~~~~g 159 (330)
T PRK11028 92 RFLFSASYN-----ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK-------EDRIRLFTLSDDG 159 (330)
T ss_pred CEEEEEEcC-----CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC-------CCEEEEEEECCCC
Confidence 56765321 2457777775331 1122222222223444333 3467766543 3578999886532
Q ss_pred -eeecc----CCCCCceeeeEEEE-C-CeEEEEcCcCCCCCCCCeEEEEECC--CCeEEE---ccCCcC----ccCcceE
Q psy2979 275 -WQDLA----PMLIPRSGAAICAL-D-SCIYVLGGWHASTENTNRVECYHIA--ENTWEY---KSPMKE----KRYRPGI 338 (400)
Q Consensus 275 -W~~~~----~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~v~~yd~~--~~~W~~---~~~~~~----~~~~~~~ 338 (400)
..... ..+....-..++.. + ..+|+.... .+++..|+.. +++.+. +..+|. ++.. ..
T Consensus 160 ~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~------~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~ 232 (330)
T PRK11028 160 HLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL------NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWA-AD 232 (330)
T ss_pred cccccCCCceecCCCCCCceEEECCCCCEEEEEecC------CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccc-ee
Confidence 21100 11111111123333 3 367776543 4566666664 445433 333332 2221 11
Q ss_pred EEE--C-CEEEEEcCccCCCCCCCeEEEEEC--CCCcEEEecCCCCCCCceeeEEEcccccccc
Q psy2979 339 AVI--D-GKIYVLGGEEGWDGYHDSIECYDV--DNDSWEIMSHLPSARSWLGCVPLQIHKSQFV 397 (400)
Q Consensus 339 ~~~--~-~~lyv~GG~~~~~~~~~~v~~yd~--~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~ 397 (400)
..+ + ..+|+.... .+.|.+|+. .+..++.+...+....-..+++-.+..++++
T Consensus 233 i~~~pdg~~lyv~~~~------~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~v 290 (330)
T PRK11028 233 IHITPDGRHLYACDRT------ASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIA 290 (330)
T ss_pred EEECCCCCEEEEecCC------CCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEE
Confidence 222 3 457776332 245666655 4445665554433222223444445555544
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.04 Score=47.73 Aligned_cols=110 Identities=14% Similarity=0.134 Sum_probs=80.9
Q ss_pred EEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEEC
Q psy2979 240 AVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHI 318 (400)
Q Consensus 240 ~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~ 318 (400)
+... .+|.+|..-|. -| .+.+.+||+.+.+-....++|...++=+++.++++||.+-=. ......||+
T Consensus 49 GL~~~~~g~LyESTG~---yG--~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk------~~~~f~yd~ 117 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGL---YG--QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWK------EGTGFVYDP 117 (264)
T ss_dssp EEEEEETTEEEEEECS---TT--EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESS------SSEEEEEET
T ss_pred cEEecCCCEEEEeCCC---CC--cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEec------CCeEEEEcc
Confidence 4455 67899988776 44 468999999999988778899988999999999999999744 568999999
Q ss_pred CCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 319 AENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 319 ~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
.+ .+.+...+.+..+-+++.-+..+++.-|. +.++..||++-
T Consensus 118 ~t--l~~~~~~~y~~EGWGLt~dg~~Li~SDGS-------~~L~~~dP~~f 159 (264)
T PF05096_consen 118 NT--LKKIGTFPYPGEGWGLTSDGKRLIMSDGS-------SRLYFLDPETF 159 (264)
T ss_dssp TT--TEEEEEEE-SSS--EEEECSSCEEEE-SS-------SEEEEE-TTT-
T ss_pred cc--ceEEEEEecCCcceEEEcCCCEEEEECCc-------cceEEECCccc
Confidence 76 45556666667888898778888888775 67888998864
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.24 Score=45.85 Aligned_cols=215 Identities=13% Similarity=0.148 Sum_probs=113.3
Q ss_pred CCeEEEEE-eecCEEEEEECCCCC-eEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceE-EccCC
Q psy2979 156 GRNTIYCL-DIVDIVYVAASMHKI-LHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWS-YIEPM 232 (400)
Q Consensus 156 ~~~~iyv~-~~~~~~~~yd~~~~~-w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~-~~~~l 232 (400)
+|. ++.. +....+..||..+.. ...+..-..|-..--....++.+++.|+-+. .+..+|..+..=+ .+..-
T Consensus 79 DG~-LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~-----v~k~~d~s~a~v~~~l~~h 152 (487)
T KOG0310|consen 79 DGR-LLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDK-----VVKYWDLSTAYVQAELSGH 152 (487)
T ss_pred CCe-EEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCc-----eEEEEEcCCcEEEEEecCC
Confidence 566 7777 667788899944311 1111111112111122335788888887542 2445566555421 11111
Q ss_pred CCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCC
Q psy2979 233 KLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTN 311 (400)
Q Consensus 233 ~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~ 311 (400)
......-+....++.|.+.||+ |+ .|-.||..+.+ ..+..+.....--.+..+ +|.+++..| -+
T Consensus 153 tDYVR~g~~~~~~~hivvtGsY---Dg----~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasAg-------Gn 217 (487)
T KOG0310|consen 153 TDYVRCGDISPANDHIVVTGSY---DG----KVRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASAG-------GN 217 (487)
T ss_pred cceeEeeccccCCCeEEEecCC---Cc----eEEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEcC-------CC
Confidence 1122222334468899999999 77 68889988774 333333322111223333 434444433 24
Q ss_pred eEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEE
Q psy2979 312 RVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPL 389 (400)
Q Consensus 312 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 389 (400)
.|-.+|..++.= .+..+......-++..+ ++.=.+.||. + ..|-+|| +..|+.+-.+..|---.++++-
T Consensus 218 ~vkVWDl~~G~q-ll~~~~~H~KtVTcL~l~s~~~rLlS~sL-D-----~~VKVfd--~t~~Kvv~s~~~~~pvLsiavs 288 (487)
T KOG0310|consen 218 SVKVWDLTTGGQ-LLTSMFNHNKTVTCLRLASDSTRLLSGSL-D-----RHVKVFD--TTNYKVVHSWKYPGPVLSIAVS 288 (487)
T ss_pred eEEEEEecCCce-ehhhhhcccceEEEEEeecCCceEeeccc-c-----cceEEEE--ccceEEEEeeecccceeeEEec
Confidence 788888775431 12222211111122222 4566677777 3 3578999 5678888776655555666666
Q ss_pred cccccccccCC
Q psy2979 390 QIHKSQFVDKS 400 (400)
Q Consensus 390 ~~~~~~~~~~~ 400 (400)
++...+++|++
T Consensus 289 ~dd~t~viGms 299 (487)
T KOG0310|consen 289 PDDQTVVIGMS 299 (487)
T ss_pred CCCceEEEecc
Confidence 77777777654
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.35 Score=42.11 Aligned_cols=180 Identities=10% Similarity=0.100 Sum_probs=81.6
Q ss_pred EEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccc
Q psy2979 160 IYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTS 238 (400)
Q Consensus 160 iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~ 238 (400)
+++......+..||..+++....-. .....-.++... ++.+++.|+.+ ..+..||+.+.+-...-. .....-
T Consensus 66 l~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~-~~~~~i 138 (289)
T cd00200 66 LASGSSDKTIRLWDLETGECVRTLT-GHTSYVSSVAFSPDGRILSSSSRD-----KTIKVWDVETGKCLTTLR-GHTDWV 138 (289)
T ss_pred EEEEcCCCeEEEEEcCcccceEEEe-ccCCcEEEEEEcCCCCEEEEecCC-----CeEEEEECCCcEEEEEec-cCCCcE
Confidence 4444556678888887643211111 011111122222 34666666533 458888987554322211 111111
Q ss_pred cEEEEe-CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCc-eeeeEEEE-CCeEEEEcCcCCCCCCCCeEEE
Q psy2979 239 PAVVAH-EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPR-SGAAICAL-DSCIYVLGGWHASTENTNRVEC 315 (400)
Q Consensus 239 ~~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r-~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~ 315 (400)
.++... ++.+++.|+. + ..+..||..+.+- +..+.... ...++... ++..+++++. ...+..
T Consensus 139 ~~~~~~~~~~~l~~~~~---~----~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~------~~~i~i 203 (289)
T cd00200 139 NSVAFSPDGTFVASSSQ---D----GTIKLWDLRTGKC--VATLTGHTGEVNSVAFSPDGEKLLSSSS------DGTIKL 203 (289)
T ss_pred EEEEEcCcCCEEEEEcC---C----CcEEEEEcccccc--ceeEecCccccceEEECCCcCEEEEecC------CCcEEE
Confidence 122222 2455555553 2 3688888864331 11111111 11222222 4435555554 346888
Q ss_pred EECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 316 YHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 316 yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
||..+.+.... +............ ++++++.++. ...+..||..+.
T Consensus 204 ~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~------~~~i~i~~~~~~ 251 (289)
T cd00200 204 WDLSTGKCLGT--LRGHENGVNSVAFSPDGYLLASGSE------DGTIRVWDLRTG 251 (289)
T ss_pred EECCCCceecc--hhhcCCceEEEEEcCCCcEEEEEcC------CCcEEEEEcCCc
Confidence 99876543222 2111111122222 3566666653 246888988764
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.54 Score=43.15 Aligned_cols=210 Identities=13% Similarity=0.159 Sum_probs=105.8
Q ss_pred CceEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccC-CCCcc-eeeeEEEECCEEEEEcccCCCCC
Q psy2979 135 KVWKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGS-LKFDF-DVSGIAMLDGFVYAVGGWDGSCR 212 (400)
Q Consensus 135 ~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~-~~~~r-~~~~~~~~~~~iyv~GG~~~~~~ 212 (400)
..|.+.. +|.......+...+....|++.....++.=.-.-.+|+.... ++... ...++...++..|++|..
T Consensus 35 ~~W~~~~-~~~~~~l~~v~F~d~~~g~avG~~G~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~~~~~~G~~----- 108 (334)
T PRK13684 35 SPWQVID-LPTEANLLDIAFTDPNHGWLVGSNRTLLETNDGGETWEERSLDLPEENFRLISISFKGDEGWIVGQP----- 108 (334)
T ss_pred CCcEEEe-cCCCCceEEEEEeCCCcEEEEECCCEEEEEcCCCCCceECccCCcccccceeeeEEcCCcEEEeCCC-----
Confidence 3576654 343444455565554435655444444443334568998653 32222 222333335556766531
Q ss_pred CCeEEEEeCCCCceEEccCC-CCcccccEEEEe-CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeE
Q psy2979 213 LDSVERYDPTKNEWSYIEPM-KLAVTSPAVVAH-EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAI 290 (400)
Q Consensus 213 ~~~v~~yd~~~~~W~~~~~l-~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~ 290 (400)
..+++=+-.-.+|+.+... ..+........+ ++.+|+.|.. ..+++=+-...+|+.+.... .-..+.+
T Consensus 109 -g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~--------G~i~~S~DgG~tW~~~~~~~-~g~~~~i 178 (334)
T PRK13684 109 -SLLLHTTDGGKNWTRIPLSEKLPGSPYLITALGPGTAEMATNV--------GAIYRTTDGGKNWEALVEDA-AGVVRNL 178 (334)
T ss_pred -ceEEEECCCCCCCeEccCCcCCCCCceEEEEECCCcceeeecc--------ceEEEECCCCCCceeCcCCC-cceEEEE
Confidence 1233323334589988521 111122223333 3456666544 25677666788999886433 2244455
Q ss_pred EEECCeEEEEcCcCCCCCCCCeEEEE-ECCCCeEEEccCCcCccCcceEEEE-CCEEEEEcCccCCCCCCCeEEEEE--C
Q psy2979 291 CALDSCIYVLGGWHASTENTNRVECY-HIAENTWEYKSPMKEKRYRPGIAVI-DGKIYVLGGEEGWDGYHDSIECYD--V 366 (400)
Q Consensus 291 ~~~~~~iyv~GG~~~~~~~~~~v~~y-d~~~~~W~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd--~ 366 (400)
....+..+++.|. ...++.- |....+|+.+.. +..+...++... +++++++|.. . ...+. -
T Consensus 179 ~~~~~g~~v~~g~------~G~i~~s~~~gg~tW~~~~~-~~~~~l~~i~~~~~g~~~~vg~~-G-------~~~~~s~d 243 (334)
T PRK13684 179 RRSPDGKYVAVSS------RGNFYSTWEPGQTAWTPHQR-NSSRRLQSMGFQPDGNLWMLARG-G-------QIRFNDPD 243 (334)
T ss_pred EECCCCeEEEEeC------CceEEEEcCCCCCeEEEeeC-CCcccceeeeEcCCCCEEEEecC-C-------EEEEccCC
Confidence 5554444444443 2334433 445567998854 333344444333 6788888753 1 23342 2
Q ss_pred CCCcEEEec
Q psy2979 367 DNDSWEIMS 375 (400)
Q Consensus 367 ~~~~W~~~~ 375 (400)
...+|+.+.
T Consensus 244 ~G~sW~~~~ 252 (334)
T PRK13684 244 DLESWSKPI 252 (334)
T ss_pred CCCcccccc
Confidence 334899753
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.066 Score=49.17 Aligned_cols=147 Identities=14% Similarity=0.163 Sum_probs=87.9
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCccccc--EEEEeCCE-EEEEcCccccCCCCcceEEEEeCCCCc
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSP--AVVAHEGM-LYVTGGAILEDGDGIEQVQRYNPKVNQ 274 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~--~~~~~~~~-iyv~GG~~~~~~~~~~~v~~yd~~~~~ 274 (400)
...+.+++|.++. -.++..|-.+|. .+.++....+-- +...-+|. ..+++|. ..-++.||..+.+
T Consensus 224 ~~plllvaG~d~~---lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r-------rky~ysyDle~ak 291 (514)
T KOG2055|consen 224 TAPLLLVAGLDGT---LRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR-------RKYLYSYDLETAK 291 (514)
T ss_pred CCceEEEecCCCc---EEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEeccc-------ceEEEEeeccccc
Confidence 3467788887643 234444555554 444433211111 11222454 7777787 4678999999999
Q ss_pred eeeccCCC---CCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCc
Q psy2979 275 WQDLAPML---IPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGE 351 (400)
Q Consensus 275 W~~~~~~~---~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~ 351 (400)
-+++.++. .+-...-.+..++.+.++-|. ...+......|+.|..--.++..........-+.+|++.||.
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~------~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~ 365 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN------NGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGT 365 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEccc------CceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCC
Confidence 99887654 112222234445666666666 456778888888886544444333333333335668888886
Q ss_pred cCCCCCCCeEEEEECCCC
Q psy2979 352 EGWDGYHDSIECYDVDND 369 (400)
Q Consensus 352 ~~~~~~~~~v~~yd~~~~ 369 (400)
.+||++|...+
T Consensus 366 -------GeV~v~nl~~~ 376 (514)
T KOG2055|consen 366 -------GEVYVWNLRQN 376 (514)
T ss_pred -------ceEEEEecCCc
Confidence 47999999887
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.069 Score=47.25 Aligned_cols=109 Identities=18% Similarity=0.262 Sum_probs=67.5
Q ss_pred CCeEEEEeCCCCceEEccCCCCcccccEEEEe-CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccC-----CCCCce
Q psy2979 213 LDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH-EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAP-----MLIPRS 286 (400)
Q Consensus 213 ~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~-----~~~~r~ 286 (400)
-..+-.||+.+.+|..+..=-.... ..+.-. ++++|+.|-.+..+. ....+-.||..+.+|+.++. +|.+..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V-~~l~~~~~~~Llv~G~ft~~~~-~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTV-TDLQWASNNQLLVGGNFTLNGT-NSSNLATYDFKNQTWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEE-EEEEEecCCEEEEEEeeEECCC-CceeEEEEecCCCeeeecCCcccccCCCcEE
Confidence 4567889999999998754211111 122223 678887775532221 25678999999999998875 344433
Q ss_pred eeeEEEEC-CeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccC
Q psy2979 287 GAAICALD-SCIYVLGGWHASTENTNRVECYHIAENTWEYKSP 328 (400)
Q Consensus 287 ~~~~~~~~-~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 328 (400)
.......+ +.+++.|.. . .. ..-+..|| ..+|..+..
T Consensus 93 a~~~~~~d~~~~~~aG~~-~-~g-~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRS-A-NG-STFLMKYD--GSSWSSIGS 130 (281)
T ss_pred EEEeeccCCceEEEecee-c-CC-CceEEEEc--CCceEeccc
Confidence 33333333 367777765 2 22 45677885 778998875
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.59 Score=41.95 Aligned_cols=238 Identities=16% Similarity=0.173 Sum_probs=106.0
Q ss_pred CCCceEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCC-CCc-c-eeeeEEEECCEEEEEcccCC
Q psy2979 133 KTKVWKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSL-KFD-F-DVSGIAMLDGFVYAVGGWDG 209 (400)
Q Consensus 133 ~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~-~~~-r-~~~~~~~~~~~iyv~GG~~~ 209 (400)
....|..+. +|.......+...+...-|++.....++.=+---.+|+....- ..+ . ...++...++..|++|..
T Consensus 4 ~~~~W~~v~-l~t~~~l~dV~F~d~~~G~~VG~~g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~-- 80 (302)
T PF14870_consen 4 SGNSWQQVS-LPTDKPLLDVAFVDPNHGWAVGAYGTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP-- 80 (302)
T ss_dssp SS--EEEEE--S-SS-EEEEEESSSS-EEEEETTTEEEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEET--
T ss_pred cCCCcEEee-cCCCCceEEEEEecCCEEEEEecCCEEEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCC--
Confidence 345688765 4444455566666555467775555555544445679987642 222 2 223344457788988642
Q ss_pred CCCCCeEEEEeCCCCceEEcc-CCCCcccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCcee
Q psy2979 210 SCRLDSVERYDPTKNEWSYIE-PMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSG 287 (400)
Q Consensus 210 ~~~~~~v~~yd~~~~~W~~~~-~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~ 287 (400)
..+.+-.-.-.+|+.++ +.+.+-..+.... -++.+.++|.. ..+++=.-...+|+.+..-... ..
T Consensus 81 ----g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~--------G~iy~T~DgG~tW~~~~~~~~g-s~ 147 (302)
T PF14870_consen 81 ----GLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR--------GAIYRTTDGGKTWQAVVSETSG-SI 147 (302)
T ss_dssp ----TEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT----------EEEESSTTSSEEEEE-S-----E
T ss_pred ----ceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC--------CcEEEeCCCCCCeeEcccCCcc-ee
Confidence 22444444567899985 1122222233333 45667776654 3577777778899987543322 22
Q ss_pred eeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEE-
Q psy2979 288 AAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYD- 365 (400)
Q Consensus 288 ~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd- 365 (400)
..+... ++++++++.. -+-....|+....|+........|...-...-++.|+++. . ++ .+..=+
T Consensus 148 ~~~~r~~dG~~vavs~~------G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~-Gg-----~~~~s~~ 214 (302)
T PF14870_consen 148 NDITRSSDGRYVAVSSR------GNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-R-GG-----QIQFSDD 214 (302)
T ss_dssp EEEEE-TTS-EEEEETT------SSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-T-TT-----EEEEEE-
T ss_pred EeEEECCCCcEEEEECc------ccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-C-Cc-----EEEEccC
Confidence 223333 6676666643 1234467888888988765433332222223367787764 1 11 233333
Q ss_pred -CCCCcEEEecCCCCCCCc---eeeEEEcccccccccCC
Q psy2979 366 -VDNDSWEIMSHLPSARSW---LGCVPLQIHKSQFVDKS 400 (400)
Q Consensus 366 -~~~~~W~~~~~~~~~r~~---~~~~~~~~~~~~~~~~~ 400 (400)
-..++|.+. ..|....+ ..++.-+++.++.+||+
T Consensus 215 ~~~~~~w~~~-~~~~~~~~~~~ld~a~~~~~~~wa~gg~ 252 (302)
T PF14870_consen 215 PDDGETWSEP-IIPIKTNGYGILDLAYRPPNEIWAVGGS 252 (302)
T ss_dssp TTEEEEE----B-TTSS--S-EEEEEESSSS-EEEEEST
T ss_pred CCCccccccc-cCCcccCceeeEEEEecCCCCEEEEeCC
Confidence 234567772 23332222 44555566666666664
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.88 Score=43.71 Aligned_cols=190 Identities=11% Similarity=0.052 Sum_probs=97.7
Q ss_pred cCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeC
Q psy2979 166 VDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHE 245 (400)
Q Consensus 166 ~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~ 245 (400)
...++.+|+.+++-..+...+..........-++.|++....++ ...++.+|..+++.+.+..-.......+...-+
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g---~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG 317 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDG---QPEIYVVDIATKALTRITRHRAIDTEPSWHPDG 317 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCC---CeEEEEEECCCCCeEECccCCCCccceEECCCC
Confidence 34688999988876666554322111111112345655543322 256899999999887775432211111111223
Q ss_pred CEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECC-eEEEEcCcCCCCCCCCeEEEEECCCCeEE
Q psy2979 246 GMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDS-CIYVLGGWHASTENTNRVECYHIAENTWE 324 (400)
Q Consensus 246 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 324 (400)
..|++.... ++ ...++.+|..+.+++.+..-. .........-++ .|+..+ .... ...++.+|+.++...
T Consensus 318 ~~I~f~s~~---~g--~~~Iy~~dl~~g~~~~Lt~~g-~~~~~~~~SpDG~~l~~~~-~~~g---~~~I~~~dl~~g~~~ 387 (448)
T PRK04792 318 KSLIFTSER---GG--KPQIYRVNLASGKVSRLTFEG-EQNLGGSITPDGRSMIMVN-RTNG---KFNIARQDLETGAMQ 387 (448)
T ss_pred CEEEEEECC---CC--CceEEEEECCCCCEEEEecCC-CCCcCeeECCCCCEEEEEE-ecCC---ceEEEEEECCCCCeE
Confidence 455554332 22 357999999988888774211 111112223344 444443 2221 347899999998887
Q ss_pred EccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEe
Q psy2979 325 YKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 374 (400)
.+..-... ..+. ..-+|+..++... .+ ....++.+|.. +.+...
T Consensus 388 ~lt~~~~d-~~ps-~spdG~~I~~~~~-~~--g~~~l~~~~~~-G~~~~~ 431 (448)
T PRK04792 388 VLTSTRLD-ESPS-VAPNGTMVIYSTT-YQ--GKQVLAAVSID-GRFKAR 431 (448)
T ss_pred EccCCCCC-CCce-ECCCCCEEEEEEe-cC--CceEEEEEECC-CCceEE
Confidence 76543211 1222 2234543333322 11 12467888874 445443
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.28 Score=44.20 Aligned_cols=227 Identities=12% Similarity=0.073 Sum_probs=105.2
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEE----------eecCEEEEEECCCCCeEEccCCCC-cce---
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCL----------DIVDIVYVAASMHKILHSLGSLKF-DFD--- 190 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~----------~~~~~~~~yd~~~~~w~~~~~~~~-~r~--- 190 (400)
..+.++|..+++. +..++..-..+.+..-+++.+|+. ....-+..||..+-+-..--.+|. +|.
T Consensus 17 ~rv~viD~d~~k~--lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKL--LGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEE--EEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcE--EEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 5788889888774 344444444454444556557876 455668999999875433222332 232
Q ss_pred ----eeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCcc------c-cCC
Q psy2979 191 ----VSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAI------L-EDG 259 (400)
Q Consensus 191 ----~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~------~-~~~ 259 (400)
.+++..-+..+||.- -.+..+|.+.|...++.-..-+.| -+.+.--.-++.++.+.|.. . .+|
T Consensus 95 ~~~~~~~ls~dgk~~~V~N----~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~G 168 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQN----FTPATSVTVVDLAAKKVVGEIDTP--GCWLIYPSGNRGFSMLCGDGSLLTVTLDADG 168 (342)
T ss_dssp --GGGEEE-TTSSEEEEEE----ESSSEEEEEEETTTTEEEEEEEGT--SEEEEEEEETTEEEEEETTSCEEEEEETSTS
T ss_pred ccccceEEccCCcEEEEEc----cCCCCeEEEEECCCCceeeeecCC--CEEEEEecCCCceEEEecCCceEEEEECCCC
Confidence 222222244666652 245678999999998764432222 11111111222333332210 0 133
Q ss_pred CC-cceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCC-----CeEEEccCCcCcc
Q psy2979 260 DG-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAE-----NTWEYKSPMKEKR 333 (400)
Q Consensus 260 ~~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~-----~~W~~~~~~~~~~ 333 (400)
.. ...-..|++..+-...-+.........-...++|.+|-+.=.... ..-...+...+ ..|..-
T Consensus 169 k~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~---~~~~~~~~~~t~~e~~~~WrPG------- 238 (342)
T PF06433_consen 169 KEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS---AKFGKPWSLLTDAEKADGWRPG------- 238 (342)
T ss_dssp SEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS---EEEEEEEESS-HHHHHTTEEE--------
T ss_pred CEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc---ccccCcccccCccccccCcCCc-------
Confidence 32 233346666655433322221111122335667777774321111 11111222211 234322
Q ss_pred CcceEEEE---CCEEEEEc---CccCCCCCCCeEEEEECCCCc
Q psy2979 334 YRPGIAVI---DGKIYVLG---GEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 334 ~~~~~~~~---~~~lyv~G---G~~~~~~~~~~v~~yd~~~~~ 370 (400)
+....++ .++|||+= +..........||+||+++.+
T Consensus 239 -G~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k 280 (342)
T PF06433_consen 239 -GWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK 280 (342)
T ss_dssp -SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE
T ss_pred -ceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCe
Confidence 1222233 68999872 221222345789999999984
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.77 Score=42.15 Aligned_cols=112 Identities=7% Similarity=-0.123 Sum_probs=65.7
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEE-e---------ecCEEEEEECCCCCe
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCL-D---------IVDIVYVAASMHKIL 179 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~-~---------~~~~~~~yd~~~~~w 179 (400)
..+|+.......- .+.+.++|..+.+-. ..++.....+.+..-+++.+|+. . ....+..||+.+.+-
T Consensus 13 ~~v~V~d~~~~~~-~~~v~ViD~~~~~v~--g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~ 89 (352)
T TIGR02658 13 RRVYVLDPGHFAA-TTQVYTIDGEAGRVL--GMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP 89 (352)
T ss_pred CEEEEECCccccc-CceEEEEECCCCEEE--EEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE
Confidence 3566664432112 278889998885533 34444333344444566558888 3 567899999998875
Q ss_pred EE-ccCCCCcce-------eeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEE
Q psy2979 180 HS-LGSLKFDFD-------VSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSY 228 (400)
Q Consensus 180 ~~-~~~~~~~r~-------~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 228 (400)
.. ++..+.||. .+++..-+..+||.- ....+++.+.|..+++-..
T Consensus 90 ~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n----~~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 90 IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQ----FSPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred EeEEccCCCchhhccCccceEEECCCCCEEEEec----CCCCCEEEEEECCCCcEEE
Confidence 53 333334441 222222244677752 1235789999999887544
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=96.37 E-value=1.1 Score=43.55 Aligned_cols=248 Identities=14% Similarity=0.101 Sum_probs=129.2
Q ss_pred ccceEEEEEcCCCceEEcc--CCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCCeE-EccCCCCcceeeeEEEECC
Q psy2979 123 VLRSVEGFCVKTKVWKTLS--CLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILH-SLGSLKFDFDVSGIAMLDG 199 (400)
Q Consensus 123 ~~~~~~~yd~~~~~w~~~~--~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~-~~~~~~~~r~~~~~~~~~~ 199 (400)
....+|.|++.. .|...+ ..|..|+--+.+-.++.++|.......+-.+|+.+.+=. .+.+...+-+..++. -.+
T Consensus 45 t~g~IEiwN~~~-~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~-p~~ 122 (691)
T KOG2048|consen 45 TDGNIEIWNLSN-NWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAIN-PEN 122 (691)
T ss_pred cCCcEEEEccCC-CceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeC-Ccc
Confidence 446899999987 676443 345666666777774444888866666666776654311 111111111211111 123
Q ss_pred EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEE-EEcCccccCCCCcceEEEEeCCCCceeec
Q psy2979 200 FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLY-VTGGAILEDGDGIEQVQRYNPKVNQWQDL 278 (400)
Q Consensus 200 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iy-v~GG~~~~~~~~~~~v~~yd~~~~~W~~~ 278 (400)
.+..+|..++ .+..++...+.-+.-..++..-...-....+.... ++||.. |+ -+-++|..+.+=-.+
T Consensus 123 ~~l~IgcddG-----vl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~--Dg----~Iriwd~~~~~t~~~ 191 (691)
T KOG2048|consen 123 TILAIGCDDG-----VLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI--DG----VIRIWDVKSGQTLHI 191 (691)
T ss_pred ceEEeecCCc-----eEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc--Cc----eEEEEEcCCCceEEE
Confidence 4444443332 23334444444444344444333333344455555 677762 33 367778776654443
Q ss_pred cCCCC-------CceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCcc-CcceEEEE-CCEEEEEc
Q psy2979 279 APMLI-------PRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKR-YRPGIAVI-DGKIYVLG 349 (400)
Q Consensus 279 ~~~~~-------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~-~~~~~~~~-~~~lyv~G 349 (400)
-.|.. +..-.++..+.+...+.|.. ..+|-.+|+...+-.+ +..... ...++++- ++.-++.+
T Consensus 192 ~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS------~G~V~FWd~~~gTLiq--S~~~h~adVl~Lav~~~~d~vfsa 263 (691)
T KOG2048|consen 192 ITMQLDRLSKREPTIVWSVLFLRDSTIASGDS------AGTVTFWDSIFGTLIQ--SHSCHDADVLALAVADNEDRVFSA 263 (691)
T ss_pred eeecccccccCCceEEEEEEEeecCcEEEecC------CceEEEEcccCcchhh--hhhhhhcceeEEEEcCCCCeEEEc
Confidence 22221 22234555667777777765 5688888887765322 111111 11223333 32344555
Q ss_pred CccCCCCCCCeEEEEECCCC--cEEEecC-CCCCCCceeeEEEcccccccccC
Q psy2979 350 GEEGWDGYHDSIECYDVDND--SWEIMSH-LPSARSWLGCVPLQIHKSQFVDK 399 (400)
Q Consensus 350 G~~~~~~~~~~v~~yd~~~~--~W~~~~~-~~~~r~~~~~~~~~~~~~~~~~~ 399 (400)
|. + ..+..|...++ +|..... .-.++.--+++++++ .++-||
T Consensus 264 Gv-d-----~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG 308 (691)
T KOG2048|consen 264 GV-D-----PKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGG 308 (691)
T ss_pred cC-C-----CceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecc
Confidence 65 2 45677766554 5887743 445677778888887 455555
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=1.1 Score=42.95 Aligned_cols=146 Identities=8% Similarity=0.025 Sum_probs=81.4
Q ss_pred CeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE
Q psy2979 214 DSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL 293 (400)
Q Consensus 214 ~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 293 (400)
..++.+|+.+++-+.+...+.........--+..|++.... ++ ...++.+|..+.+.+.+..-.... ......-
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~---~g--~~~Iy~~dl~tg~~~~lt~~~~~~-~~p~wSp 315 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSK---DG--QPEIYVVDIATKALTRITRHRAID-TEPSWHP 315 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeC---CC--CeEEEEEECCCCCeEECccCCCCc-cceEECC
Confidence 56899999988877766554322222222224456655333 33 347999999998888775432111 1112223
Q ss_pred CC-eEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcce-EEEECC-EEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 294 DS-CIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPG-IAVIDG-KIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 294 ~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~-~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
++ .|++.....+ ...++.+|..+++++.+... ...... ...-+| .|++.+.. . ....++.+|+.+++
T Consensus 316 DG~~I~f~s~~~g----~~~Iy~~dl~~g~~~~Lt~~--g~~~~~~~~SpDG~~l~~~~~~-~---g~~~I~~~dl~~g~ 385 (448)
T PRK04792 316 DGKSLIFTSERGG----KPQIYRVNLASGKVSRLTFE--GEQNLGGSITPDGRSMIMVNRT-N---GKFNIARQDLETGA 385 (448)
T ss_pred CCCEEEEEECCCC----CceEEEEECCCCCEEEEecC--CCCCcCeeECCCCCEEEEEEec-C---CceEEEEEECCCCC
Confidence 44 4544432211 35799999999988877421 111111 222244 45554322 1 23578999999988
Q ss_pred EEEec
Q psy2979 371 WEIMS 375 (400)
Q Consensus 371 W~~~~ 375 (400)
.+.+.
T Consensus 386 ~~~lt 390 (448)
T PRK04792 386 MQVLT 390 (448)
T ss_pred eEEcc
Confidence 77664
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.76 Score=40.91 Aligned_cols=175 Identities=16% Similarity=0.112 Sum_probs=82.7
Q ss_pred cCEEEEEECCCCCeEEccCC-CCcceeeeEEEE-C-CEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEE
Q psy2979 166 VDIVYVAASMHKILHSLGSL-KFDFDVSGIAML-D-GFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVV 242 (400)
Q Consensus 166 ~~~~~~yd~~~~~w~~~~~~-~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~ 242 (400)
...+..+|+.+++-...-.. ..++ +++.. + +.+|+.++.+ ..+..||..+++....-+.... ...++
T Consensus 10 d~~v~~~d~~t~~~~~~~~~~~~~~---~l~~~~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~~~--~~~~~ 79 (300)
T TIGR03866 10 DNTISVIDTATLEVTRTFPVGQRPR---GITLSKDGKLLYVCASDS-----DTIQVIDLATGEVIGTLPSGPD--PELFA 79 (300)
T ss_pred CCEEEEEECCCCceEEEEECCCCCC---ceEECCCCCEEEEEECCC-----CeEEEEECCCCcEEEeccCCCC--ccEEE
Confidence 35677788776653322111 1122 12222 3 3577776533 4688899988766432111111 11222
Q ss_pred E-e-CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEE-EECCeEEEEcCcCCCCCCCCeEEEEECC
Q psy2979 243 A-H-EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAIC-ALDSCIYVLGGWHASTENTNRVECYHIA 319 (400)
Q Consensus 243 ~-~-~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~v~~yd~~ 319 (400)
. - ++.+|+.++. + ..+..||..+.+- +..++......+++ .-++.+++++..+ ...+..||..
T Consensus 80 ~~~~g~~l~~~~~~---~----~~l~~~d~~~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~-----~~~~~~~d~~ 145 (300)
T TIGR03866 80 LHPNGKILYIANED---D----NLVTVIDIETRKV--LAEIPVGVEPEGMAVSPDGKIVVNTSET-----TNMAHFIDTK 145 (300)
T ss_pred ECCCCCEEEEEcCC---C----CeEEEEECCCCeE--EeEeeCCCCcceEEECCCCCEEEEEecC-----CCeEEEEeCC
Confidence 2 2 3457776654 2 3688999877542 22122111112222 2366776666432 2346667877
Q ss_pred CCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 320 ENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 320 ~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
+.+-........ +.......-+++.+++++. . ...+..||.++.+
T Consensus 146 ~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~-~----~~~v~i~d~~~~~ 190 (300)
T TIGR03866 146 TYEIVDNVLVDQ-RPRFAEFTADGKELWVSSE-I----GGTVSVIDVATRK 190 (300)
T ss_pred CCeEEEEEEcCC-CccEEEECCCCCEEEEEcC-C----CCEEEEEEcCcce
Confidence 654322111111 1111122225554434432 1 2368889988764
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.7 Score=40.27 Aligned_cols=181 Identities=15% Similarity=0.159 Sum_probs=109.1
Q ss_pred cEEEEEeccCCCcccceEEEEE----c-CCCceEEccCCcccceeeeEEEECCeEEEEE-eecCEEEEEECCCCCeEEcc
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFC----V-KTKVWKTLSCLPFAISKHGLVVSGRNTIYCL-DIVDIVYVAASMHKILHSLG 183 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd----~-~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~-~~~~~~~~yd~~~~~w~~~~ 183 (400)
+.++++.+.... .+..|. . ..++..+.-.||.+-.+.+.++.+|. +|.- ..++.+..||..+++-....
T Consensus 31 ~~iy~~~~~~~~----~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngs-lYY~~~~s~~IvkydL~t~~v~~~~ 105 (250)
T PF02191_consen 31 EKIYVTSGFSGN----TVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGS-LYYNKYNSRNIVKYDLTTRSVVARR 105 (250)
T ss_pred CCEEEECccCCC----EEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCc-EEEEecCCceEEEEECcCCcEEEEE
Confidence 678888776532 444443 2 23333333456777777888889999 8776 66788999999998765333
Q ss_pred CCCCcc------------eeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCC----CceEEccCCCCcccccEEEEeCCE
Q psy2979 184 SLKFDF------------DVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTK----NEWSYIEPMKLAVTSPAVVAHEGM 247 (400)
Q Consensus 184 ~~~~~r------------~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~----~~W~~~~~l~~~~~~~~~~~~~~~ 247 (400)
.+|.+. ...-.++-++-|+|+-........-.+-+.||.+ .+|.. ..+.+....+ ..+=|.
T Consensus 106 ~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T--~~~k~~~~na-FmvCGv 182 (250)
T PF02191_consen 106 ELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNT--SYPKRSAGNA-FMVCGV 182 (250)
T ss_pred ECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEe--ccCchhhcce-eeEeeE
Confidence 333221 2234555577788886655443334456667764 46764 3454444443 334468
Q ss_pred EEEEcCccccCCCCcceEEEEeCCCCceeecc-CCCCCceeeeEEEE---CCeEEEEc
Q psy2979 248 LYVTGGAILEDGDGIEQVQRYNPKVNQWQDLA-PMLIPRSGAAICAL---DSCIYVLG 301 (400)
Q Consensus 248 iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~r~~~~~~~~---~~~iyv~G 301 (400)
+|++... +.....-.+.||..+++=..+. +++.+-...++..+ +.+||+..
T Consensus 183 LY~~~s~---~~~~~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 183 LYATDSY---DTRDTEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred EEEEEEC---CCCCcEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEEE
Confidence 9998765 3222345678999988766543 34444445555555 56788775
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.19 Score=45.87 Aligned_cols=119 Identities=15% Similarity=0.162 Sum_probs=81.6
Q ss_pred ceEEEEeCCCC-----ceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCe-EEEccCCcCccCcc
Q psy2979 263 EQVQRYNPKVN-----QWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENT-WEYKSPMKEKRYRP 336 (400)
Q Consensus 263 ~~v~~yd~~~~-----~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~~~~~ 336 (400)
..+..|+.... ++..+.....+-.-.+++.+++++.+..| +.+..|+...++ +...+.+..+-...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g--------~~l~v~~l~~~~~l~~~~~~~~~~~i~ 133 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG--------NKLYVYDLDNSKTLLKKAFYDSPFYIT 133 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET--------TEEEEEEEETTSSEEEEEEE-BSSSEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec--------CEEEEEEccCcccchhhheecceEEEE
Confidence 66888888774 56666544444446677788999766665 478888888888 88888776666666
Q ss_pred eEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEE-ccccc
Q psy2979 337 GIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPL-QIHKS 394 (400)
Q Consensus 337 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~~~ 394 (400)
.+.+.++.|++.--. . .-.++.|+.+..+-..++.-..++.-.++..+ ++..+
T Consensus 134 sl~~~~~~I~vgD~~-~----sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~ 187 (321)
T PF03178_consen 134 SLSVFKNYILVGDAM-K----SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTI 187 (321)
T ss_dssp EEEEETTEEEEEESS-S----SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEE
T ss_pred EEeccccEEEEEEcc-c----CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEE
Confidence 777888877654332 1 23566789877778888877778888888888 55433
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.4 Score=43.76 Aligned_cols=122 Identities=16% Similarity=0.136 Sum_probs=80.7
Q ss_pred CEEEEEECCCC-----CeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCc-eEEccCCCCcccccE
Q psy2979 167 DIVYVAASMHK-----ILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNE-WSYIEPMKLAVTSPA 240 (400)
Q Consensus 167 ~~~~~yd~~~~-----~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~l~~~~~~~~ 240 (400)
..+..|+.... +++.+.....+-.-.+++.+++++.+..| +.+..|+...++ +...+.+..+....+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g-------~~l~v~~l~~~~~l~~~~~~~~~~~i~s 134 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG-------NKLYVYDLDNSKTLLKKAFYDSPFYITS 134 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET-------TEEEEEEEETTSSEEEEEEE-BSSSEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec-------CEEEEEEccCcccchhhheecceEEEEE
Confidence 56777887774 55555554444456677778999777766 568888888888 888887776666667
Q ss_pred EEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCeEEEEc
Q psy2979 241 VVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSCIYVLG 301 (400)
Q Consensus 241 ~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~G 301 (400)
+.+.++.|++..-. . .-.+..|+....+-..++.-..++...++..+ ++..++++
T Consensus 135 l~~~~~~I~vgD~~---~---sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~ 190 (321)
T PF03178_consen 135 LSVFKNYILVGDAM---K---SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVG 190 (321)
T ss_dssp EEEETTEEEEEESS---S---SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEE
T ss_pred EeccccEEEEEEcc---c---CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEE
Confidence 77888877765333 2 23566788877778888765667776666666 65544444
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.98 Score=41.70 Aligned_cols=208 Identities=17% Similarity=0.175 Sum_probs=103.5
Q ss_pred EEEEECCCCCeEEccCCCCcceeeeEEE--ECCEEEEEcccCCCCCCCeEEEE--eCCCCceEEccCCCCcccccEEEEe
Q psy2979 169 VYVAASMHKILHSLGSLKFDFDVSGIAM--LDGFVYAVGGWDGSCRLDSVERY--DPTKNEWSYIEPMKLAVTSPAVVAH 244 (400)
Q Consensus 169 ~~~yd~~~~~w~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~y--d~~~~~W~~~~~l~~~~~~~~~~~~ 244 (400)
++.||..++++..+......-.-.-++. -++.||+..... .....+..| +..+++.+.+...+..-...+...+
T Consensus 17 ~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~--~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~ 94 (345)
T PF10282_consen 17 VFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGS--GDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAV 94 (345)
T ss_dssp EEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTS--STTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEE
T ss_pred EEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccc--cCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEE
Confidence 3566778888877664321111111222 256899886543 122345444 5555788887665532223232332
Q ss_pred ---CCEEEEEcCccccCCCCcceEEEEeCCCC-ceeec---------cCC---CCCceeeeEEEE-C-CeEEEEcCcCCC
Q psy2979 245 ---EGMLYVTGGAILEDGDGIEQVQRYNPKVN-QWQDL---------APM---LIPRSGAAICAL-D-SCIYVLGGWHAS 306 (400)
Q Consensus 245 ---~~~iyv~GG~~~~~~~~~~~v~~yd~~~~-~W~~~---------~~~---~~~r~~~~~~~~-~-~~iyv~GG~~~~ 306 (400)
+..+|+..-. ..++..|+...+ .-... .+- ....+-|.+... + ..+|+..-.
T Consensus 95 ~~~g~~l~vany~-------~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG--- 164 (345)
T PF10282_consen 95 DPDGRFLYVANYG-------GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG--- 164 (345)
T ss_dssp CTTSSEEEEEETT-------TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT---
T ss_pred ecCCCEEEEEEcc-------CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC---
Confidence 4566765322 125666666553 11111 011 122334555555 3 467766422
Q ss_pred CCCCCeEEEEECCCCe--EEEccCCcCc-cCcceEEEE---CCEEEEEcCccCCCCCCCeEEEE--ECCCCcEEEec---
Q psy2979 307 TENTNRVECYHIAENT--WEYKSPMKEK-RYRPGIAVI---DGKIYVLGGEEGWDGYHDSIECY--DVDNDSWEIMS--- 375 (400)
Q Consensus 307 ~~~~~~v~~yd~~~~~--W~~~~~~~~~-~~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~y--d~~~~~W~~~~--- 375 (400)
.+.++.|+...+. .........+ -.++--.++ +..+|++... .+.|.+| +..++.++.+.
T Consensus 165 ---~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~------s~~v~v~~~~~~~g~~~~~~~~~ 235 (345)
T PF10282_consen 165 ---ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNEL------SNTVSVFDYDPSDGSLTEIQTIS 235 (345)
T ss_dssp ---TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETT------TTEEEEEEEETTTTEEEEEEEEE
T ss_pred ---CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCC------CCcEEEEeecccCCceeEEEEee
Confidence 5688888887665 5553322211 122222233 4579998765 3445554 44477776653
Q ss_pred CCCCC---C-CceeeEEEcccccccc
Q psy2979 376 HLPSA---R-SWLGCVPLQIHKSQFV 397 (400)
Q Consensus 376 ~~~~~---r-~~~~~~~~~~~~~~~~ 397 (400)
.+|.. . ..+.+++-.+..++++
T Consensus 236 ~~~~~~~~~~~~~~i~ispdg~~lyv 261 (345)
T PF10282_consen 236 TLPEGFTGENAPAEIAISPDGRFLYV 261 (345)
T ss_dssp SCETTSCSSSSEEEEEE-TTSSEEEE
T ss_pred eccccccccCCceeEEEecCCCEEEE
Confidence 44332 1 3455666667777766
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.85 Score=39.63 Aligned_cols=143 Identities=10% Similarity=0.160 Sum_probs=66.8
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcc-cccEEEEe-CCEEEEEcCccccCCCCcceEEEEeCCCCce
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAV-TSPAVVAH-EGMLYVTGGAILEDGDGIEQVQRYNPKVNQW 275 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~-~~~~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W 275 (400)
++..+++++.+ ..+..||..+++.... +.... .-.++... ++.+++.|+. + ..+..||..+.+-
T Consensus 62 ~~~~l~~~~~~-----~~i~i~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~---~----~~i~~~~~~~~~~ 127 (289)
T cd00200 62 DGTYLASGSSD-----KTIRLWDLETGECVRT--LTGHTSYVSSVAFSPDGRILSSSSR---D----KTIKVWDVETGKC 127 (289)
T ss_pred CCCEEEEEcCC-----CeEEEEEcCcccceEE--EeccCCcEEEEEEcCCCCEEEEecC---C----CeEEEEECCCcEE
Confidence 34455556543 4588888877532211 11111 11122222 3467777764 3 3788999875432
Q ss_pred e-eccCCCCCceeeeEEEEC-CeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCc
Q psy2979 276 Q-DLAPMLIPRSGAAICALD-SCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGE 351 (400)
Q Consensus 276 ~-~~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~ 351 (400)
. .+.. ......++.... +.+++.|.. ...+..||..+.+-.. .+...........+ +++.+++++.
T Consensus 128 ~~~~~~--~~~~i~~~~~~~~~~~l~~~~~------~~~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~ 197 (289)
T cd00200 128 LTTLRG--HTDWVNSVAFSPDGTFVASSSQ------DGTIKLWDLRTGKCVA--TLTGHTGEVNSVAFSPDGEKLLSSSS 197 (289)
T ss_pred EEEecc--CCCcEEEEEEcCcCCEEEEEcC------CCcEEEEEccccccce--eEecCccccceEEECCCcCEEEEecC
Confidence 2 2221 111122222333 455555542 3468888886543211 11111111122222 4445555554
Q ss_pred cCCCCCCCeEEEEECCCCc
Q psy2979 352 EGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 352 ~~~~~~~~~v~~yd~~~~~ 370 (400)
...+.+||..+.+
T Consensus 198 ------~~~i~i~d~~~~~ 210 (289)
T cd00200 198 ------DGTIKLWDLSTGK 210 (289)
T ss_pred ------CCcEEEEECCCCc
Confidence 2468889987643
|
|
| >KOG0783|consensus | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.0056 Score=60.02 Aligned_cols=64 Identities=30% Similarity=0.486 Sum_probs=51.1
Q ss_pred HHHHHHHHhcC----ceeceEEEECCeEEehhhHHHhhcCcccccc----------------------ceeecCCCCHH-
Q psy2979 5 LTGFNEARKNN----EFCDVTLCVDGSKFPAHRVVLAASSPYFKVL----------------------ETIRLPQLSPY- 57 (400)
Q Consensus 5 l~~l~~~r~~~----~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m----------------------~~vrl~~l~~~- 57 (400)
-..|..|-.+. .|-||++.||++.|+|||-+|++.|++||-+ .++|+..+++.
T Consensus 542 e~sf~kLl~e~~~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~m 621 (1267)
T KOG0783|consen 542 EGSFPKLLSEENYKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLM 621 (1267)
T ss_pred hhhhHHHhhccccccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHH
Confidence 34455555444 4568999999999999999999999999855 57888888886
Q ss_pred --HHHHHhhhccc
Q psy2979 58 --FLHDCVEQCAI 68 (400)
Q Consensus 58 --~l~~~i~~~~l 68 (400)
+|+.+||++.+
T Consensus 622 fe~lL~~iYtdt~ 634 (1267)
T KOG0783|consen 622 FEILLHYIYTDTL 634 (1267)
T ss_pred HHHHHHHHhcccc
Confidence 88999998743
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=1.5 Score=41.79 Aligned_cols=185 Identities=10% Similarity=0.024 Sum_probs=97.2
Q ss_pred cCEEEEEECCCCCeEEccCCCCcceeeeEEEEC-CEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe
Q psy2979 166 VDIVYVAASMHKILHSLGSLKFDFDVSGIAMLD-GFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH 244 (400)
Q Consensus 166 ~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~ 244 (400)
...++.+|+.+++-+.+...+..-.... ..-+ ++|++....++ ...++.+|..+++.+.+..-+..........-
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g~~~~~~-~SpDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spD 297 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEGLNGAPA-WSPDGSKLAFVLSKDG---NPEIYVMDLASRQLSRVTNHPAIDTEPFWGKD 297 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCCCcCCeE-ECCCCCEEEEEEccCC---CceEEEEECCCCCeEEcccCCCCcCCeEECCC
Confidence 3578999998887776654332111111 1123 35554332222 25789999999988877543321111221122
Q ss_pred CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECC-eEEEEcCcCCCCCCCCeEEEEECCCCeE
Q psy2979 245 EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDS-CIYVLGGWHASTENTNRVECYHIAENTW 323 (400)
Q Consensus 245 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W 323 (400)
+..|+..... ++ ...++.+|..+.+++.+.... .........-++ .|+...... . ...++.+|+.++..
T Consensus 298 g~~i~f~s~~---~g--~~~iy~~d~~~g~~~~lt~~~-~~~~~~~~Spdg~~i~~~~~~~-~---~~~l~~~dl~tg~~ 367 (430)
T PRK00178 298 GRTLYFTSDR---GG--KPQIYKVNVNGGRAERVTFVG-NYNARPRLSADGKTLVMVHRQD-G---NFHVAAQDLQRGSV 367 (430)
T ss_pred CCEEEEEECC---CC--CceEEEEECCCCCEEEeecCC-CCccceEECCCCCEEEEEEccC-C---ceEEEEEECCCCCE
Confidence 3456655332 22 347899999888887764221 111111222244 454444221 1 34699999999988
Q ss_pred EEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 324 EYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
+.+...... ..+ ...-+|+.+++... .. ....++..+...+
T Consensus 368 ~~lt~~~~~-~~p-~~spdg~~i~~~~~-~~--g~~~l~~~~~~g~ 408 (430)
T PRK00178 368 RILTDTSLD-ESP-SVAPNGTMLIYATR-QQ--GRGVLMLVSINGR 408 (430)
T ss_pred EEccCCCCC-CCc-eECCCCCEEEEEEe-cC--CceEEEEEECCCC
Confidence 877643211 122 22336665555433 11 1346778887554
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=1.5 Score=41.77 Aligned_cols=146 Identities=9% Similarity=0.049 Sum_probs=81.3
Q ss_pred CeEEEEeCCCCceEEccCCCCcccccEEEEeC-CEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEE
Q psy2979 214 DSVERYDPTKNEWSYIEPMKLAVTSPAVVAHE-GMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICA 292 (400)
Q Consensus 214 ~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~ 292 (400)
..++.+|+.+++-+.+...+...... ...-+ ++|++.... ++ ...++.+|..+...+.+..-+..-.. ....
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~~~-~~SpDG~~la~~~~~---~g--~~~Iy~~d~~~~~~~~lt~~~~~~~~-~~~s 295 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNGAP-AWSPDGSKLAFVLSK---DG--NPEIYVMDLASRQLSRVTNHPAIDTE-PFWG 295 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcCCe-EECCCCCEEEEEEcc---CC--CceEEEEECCCCCeEEcccCCCCcCC-eEEC
Confidence 57999999998877776544221111 12224 455544322 22 24799999999888877543221111 1222
Q ss_pred ECC-eEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcce-EEEE-CCEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 293 LDS-CIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPG-IAVI-DGKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 293 ~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~-~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
-++ .|+...... . ...++.+|..+++++.+.... ..... ...- ++.|+..... .+ ...++.+|+.++
T Consensus 296 pDg~~i~f~s~~~---g-~~~iy~~d~~~g~~~~lt~~~--~~~~~~~~Spdg~~i~~~~~~-~~---~~~l~~~dl~tg 365 (430)
T PRK00178 296 KDGRTLYFTSDRG---G-KPQIYKVNVNGGRAERVTFVG--NYNARPRLSADGKTLVMVHRQ-DG---NFHVAAQDLQRG 365 (430)
T ss_pred CCCCEEEEEECCC---C-CceEEEEECCCCCEEEeecCC--CCccceEECCCCCEEEEEEcc-CC---ceEEEEEECCCC
Confidence 244 555543221 1 357999999888887764221 11111 1112 4455555432 21 346999999998
Q ss_pred cEEEecC
Q psy2979 370 SWEIMSH 376 (400)
Q Consensus 370 ~W~~~~~ 376 (400)
.++.+..
T Consensus 366 ~~~~lt~ 372 (430)
T PRK00178 366 SVRILTD 372 (430)
T ss_pred CEEEccC
Confidence 8887754
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=1.6 Score=41.71 Aligned_cols=146 Identities=11% Similarity=0.005 Sum_probs=78.7
Q ss_pred CeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE
Q psy2979 214 DSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL 293 (400)
Q Consensus 214 ~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 293 (400)
..++.+|+.+++...+...+.........--+.+|++.... ++ ...++.+|..+.....+...+... ......-
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~---~g--~~~Iy~~d~~~~~~~~Lt~~~~~~-~~~~~sp 299 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQ---GG--NTDIYTMDLRSGTTTRLTDSPAID-TSPSYSP 299 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEec---CC--CceEEEEECCCCceEEccCCCCcc-CceeEcC
Confidence 67999999999888776655433332222223455544333 33 347999999888777765433211 1122223
Q ss_pred CCe-EEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEEC-CEEEEEcCccCCCCCCCeEEEEECCCCcE
Q psy2979 294 DSC-IYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVID-GKIYVLGGEEGWDGYHDSIECYDVDNDSW 371 (400)
Q Consensus 294 ~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~~~~W 371 (400)
+++ |+...... . ...++.+|..++..+.+..... ........-+ +.|++.... .+ ...++.+|+.++..
T Consensus 300 DG~~i~f~s~~~---g-~~~Iy~~d~~g~~~~~lt~~~~-~~~~~~~SpdG~~ia~~~~~-~~---~~~i~~~d~~~~~~ 370 (435)
T PRK05137 300 DGSQIVFESDRS---G-SPQLYVMNADGSNPRRISFGGG-RYSTPVWSPRGDLIAFTKQG-GG---QFSIGVMKPDGSGE 370 (435)
T ss_pred CCCEEEEEECCC---C-CCeEEEEECCCCCeEEeecCCC-cccCeEECCCCCEEEEEEcC-CC---ceEEEEEECCCCce
Confidence 444 44332211 1 3579999988877776653221 1111111224 445444322 11 24788899877666
Q ss_pred EEe
Q psy2979 372 EIM 374 (400)
Q Consensus 372 ~~~ 374 (400)
+.+
T Consensus 371 ~~l 373 (435)
T PRK05137 371 RIL 373 (435)
T ss_pred Eec
Confidence 555
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.92 Score=42.00 Aligned_cols=107 Identities=16% Similarity=0.211 Sum_probs=68.1
Q ss_pred CCE-EEEEcccCCCCCCCeEEEEeCCCCceEEccCCC---CcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCC
Q psy2979 198 DGF-VYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMK---LAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVN 273 (400)
Q Consensus 198 ~~~-iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~---~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 273 (400)
+|. ..+.+|.. .-++.||+.+.+-+++.++- ..-...--+..++.+.++.|. .| .+......|+
T Consensus 268 ~G~~~i~~s~rr-----ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~---~G----~I~lLhakT~ 335 (514)
T KOG2055|consen 268 NGHSVIFTSGRR-----KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN---NG----HIHLLHAKTK 335 (514)
T ss_pred CCceEEEecccc-----eEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEccc---Cc----eEEeehhhhh
Confidence 444 56666643 45789999999988886643 112222234456667777777 43 5777788888
Q ss_pred ceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeE
Q psy2979 274 QWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTW 323 (400)
Q Consensus 274 ~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 323 (400)
.|----.++......+...-+..|+++|| ...||.+|..++..
T Consensus 336 eli~s~KieG~v~~~~fsSdsk~l~~~~~-------~GeV~v~nl~~~~~ 378 (514)
T KOG2055|consen 336 ELITSFKIEGVVSDFTFSSDSKELLASGG-------TGEVYVWNLRQNSC 378 (514)
T ss_pred hhhheeeeccEEeeEEEecCCcEEEEEcC-------CceEEEEecCCcce
Confidence 77544344444444444444567888887 46899999998853
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=1.7 Score=41.65 Aligned_cols=232 Identities=10% Similarity=-0.029 Sum_probs=114.3
Q ss_pred cceEEEEEcCCCceEEccCCcccceeeeEEE-ECCeEEEEE---eecCEEEEEECCCCCeEEccCCCCcceeeeEEEECC
Q psy2979 124 LRSVEGFCVKTKVWKTLSCLPFAISKHGLVV-SGRNTIYCL---DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDG 199 (400)
Q Consensus 124 ~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~-~~~~~iyv~---~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~ 199 (400)
..+++..|.....-..+..-..+. ..... -++..|+.+ .....++.+|+.+++...+...+..-..... .-++
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~v--~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~-SPDG 257 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSLV--LTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRF-SPDG 257 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCCe--EeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEE-CCCC
Confidence 557778876554433333211111 11111 234324333 2236799999998887776654432221111 1244
Q ss_pred -EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCC-EEEEEcCccccCCCCcceEEEEeCCCCceee
Q psy2979 200 -FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEG-MLYVTGGAILEDGDGIEQVQRYNPKVNQWQD 277 (400)
Q Consensus 200 -~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~ 277 (400)
+|++....++ ...++.+|..+++...+..-+..... ....-++ .|+..... ++ ...++.+|..+...+.
T Consensus 258 ~~la~~~~~~g---~~~Iy~~d~~~~~~~~Lt~~~~~~~~-~~~spDG~~i~f~s~~---~g--~~~Iy~~d~~g~~~~~ 328 (435)
T PRK05137 258 RKVVMSLSQGG---NTDIYTMDLRSGTTTRLTDSPAIDTS-PSYSPDGSQIVFESDR---SG--SPQLYVMNADGSNPRR 328 (435)
T ss_pred CEEEEEEecCC---CceEEEEECCCCceEEccCCCCccCc-eeEcCCCCEEEEEECC---CC--CCeEEEEECCCCCeEE
Confidence 5544433222 35688899998887776543322111 1222344 45443322 22 3478999988777776
Q ss_pred ccCCCCCceeeeEEEECC-eEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCE-EEEEcCccCCC
Q psy2979 278 LAPMLIPRSGAAICALDS-CIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGK-IYVLGGEEGWD 355 (400)
Q Consensus 278 ~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-lyv~GG~~~~~ 355 (400)
+.... .........-+| .|++.. .... ...++.+|+.++....+..-. .-..+ ...-+|+ |+..... .+.
T Consensus 329 lt~~~-~~~~~~~~SpdG~~ia~~~-~~~~---~~~i~~~d~~~~~~~~lt~~~-~~~~p-~~spDG~~i~~~~~~-~~~ 400 (435)
T PRK05137 329 ISFGG-GRYSTPVWSPRGDLIAFTK-QGGG---QFSIGVMKPDGSGERILTSGF-LVEGP-TWAPNGRVIMFFRQT-PGS 400 (435)
T ss_pred eecCC-CcccCeEECCCCCEEEEEE-cCCC---ceEEEEEECCCCceEeccCCC-CCCCC-eECCCCCEEEEEEcc-CCC
Confidence 64321 111111222344 444433 2111 347889998777665554321 11111 1222555 4444322 211
Q ss_pred CCCCeEEEEECCCCcEEEec
Q psy2979 356 GYHDSIECYDVDNDSWEIMS 375 (400)
Q Consensus 356 ~~~~~v~~yd~~~~~W~~~~ 375 (400)
.....++.+|..+..-+.++
T Consensus 401 ~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 401 GGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred CCcceEEEEECCCCceEEcc
Confidence 11257999999887666554
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=95.81 E-value=1.6 Score=40.67 Aligned_cols=201 Identities=17% Similarity=0.180 Sum_probs=106.9
Q ss_pred EEECCeEEEEEeecCEEEEEECCCCC--eEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCC--ceEE
Q psy2979 153 VVSGRNTIYCLDIVDIVYVAASMHKI--LHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKN--EWSY 228 (400)
Q Consensus 153 ~~~~~~~iyv~~~~~~~~~yd~~~~~--w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~ 228 (400)
+..++. +|+......++.+|+.+.+ |.................-+++||+-.. ++ .+++||..++ .|+.
T Consensus 65 ~~~dg~-v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~-~g-----~~y~ld~~~G~~~W~~ 137 (370)
T COG1520 65 ADGDGT-VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSW-DG-----KLYALDASTGTLVWSR 137 (370)
T ss_pred EeeCCe-EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecc-cc-----eEEEEECCCCcEEEEE
Confidence 555667 8887555689999999887 8653332001111112222778777433 32 6889998654 5876
Q ss_pred ccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCc--eeeccCC-CCCceeeeEEEECCeEEEEcCcCC
Q psy2979 229 IEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ--WQDLAPM-LIPRSGAAICALDSCIYVLGGWHA 305 (400)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~~~~~-~~~r~~~~~~~~~~~iyv~GG~~~ 305 (400)
-.+-. .+..-..++.++.+|+... ...++++|..+.+ |+.-.+. ...+.....+..++.+|+-...
T Consensus 138 ~~~~~-~~~~~~~v~~~~~v~~~s~--------~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~-- 206 (370)
T COG1520 138 NVGGS-PYYASPPVVGDGTVYVGTD--------DGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDG-- 206 (370)
T ss_pred ecCCC-eEEecCcEEcCcEEEEecC--------CCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCC--
Confidence 54332 3333344556777776631 1368888887544 8744332 2222222333556666665422
Q ss_pred CCCCCCeEEEEECCCC--eEEEccCCcCccCcc--eEEEECCEEEEEcCccCCCCCCCeEEEEECCCC--cEEEec
Q psy2979 306 STENTNRVECYHIAEN--TWEYKSPMKEKRYRP--GIAVIDGKIYVLGGEEGWDGYHDSIECYDVDND--SWEIMS 375 (400)
Q Consensus 306 ~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~--~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~ 375 (400)
. ...++.+|++++ .|+.-...+..+..- ......+.||+-|+. ........+.++|..+. .|+.-.
T Consensus 207 --~-~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~-~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 207 --Y-DGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGV-YAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred --C-cceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcE-EEEecCCeEEEEEcCCCceEEEEec
Confidence 1 126999999766 488533333222211 122334555555442 11111234777777665 366543
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.99 Score=41.50 Aligned_cols=139 Identities=13% Similarity=0.183 Sum_probs=79.4
Q ss_pred ccccEEEEe-CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCe
Q psy2979 236 VTSPAVVAH-EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNR 312 (400)
Q Consensus 236 ~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 312 (400)
....+++.+ +|.|+..|-. ++ .+-.||.+... .++.+|..-.--....+ ||...+.+-. ..+
T Consensus 348 v~~ts~~fHpDgLifgtgt~---d~----~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~ad------d~~ 412 (506)
T KOG0289|consen 348 VEYTSAAFHPDGLIFGTGTP---DG----VVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAAD------DGS 412 (506)
T ss_pred ceeEEeeEcCCceEEeccCC---Cc----eEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEec------CCe
Confidence 334444444 7888887766 54 68889987776 66666642222233333 4444444432 345
Q ss_pred EEEEECCCCeEEEccCCcCccC-cceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEE
Q psy2979 313 VECYHIAENTWEYKSPMKEKRY-RPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPL 389 (400)
Q Consensus 313 v~~yd~~~~~W~~~~~~~~~~~-~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 389 (400)
|..+|..+.+ ..+..+.+-. ......+ .|+..+++|. .-.|+.|+-.+.+|+++..++..-.-...+-.
T Consensus 413 V~lwDLRKl~--n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~------~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~F 484 (506)
T KOG0289|consen 413 VKLWDLRKLK--NFKTIQLDEKKEVNSLSFDQSGTYLGIAGS------DLQVYICKKKTKSWTEIKELADHSGLSTGVRF 484 (506)
T ss_pred EEEEEehhhc--ccceeeccccccceeEEEcCCCCeEEeecc------eeEEEEEecccccceeeehhhhcccccceeee
Confidence 8899987665 3333332221 1222223 4677777776 35788889999999999887765433334444
Q ss_pred cccccccc
Q psy2979 390 QIHKSQFV 397 (400)
Q Consensus 390 ~~~~~~~~ 397 (400)
++..-.++
T Consensus 485 g~~aq~l~ 492 (506)
T KOG0289|consen 485 GEHAQYLA 492 (506)
T ss_pred cccceEEe
Confidence 44333333
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=95.55 E-value=1.3 Score=41.18 Aligned_cols=174 Identities=16% Similarity=0.191 Sum_probs=86.6
Q ss_pred eecCEEEEEECCCCCeEEccCCCC-cceeeeE-EEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCC---Ccccc
Q psy2979 164 DIVDIVYVAASMHKILHSLGSLKF-DFDVSGI-AMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMK---LAVTS 238 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~~~-~r~~~~~-~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~---~~~~~ 238 (400)
..+..+..|+..+..-.+ .... .+.-+++ ..-+|++...|+.+| .|..||..+.. .+-.+. .+...
T Consensus 45 t~S~rvqly~~~~~~~~k--~~srFk~~v~s~~fR~DG~LlaaGD~sG-----~V~vfD~k~r~--iLR~~~ah~apv~~ 115 (487)
T KOG0310|consen 45 TSSVRVQLYSSVTRSVRK--TFSRFKDVVYSVDFRSDGRLLAAGDESG-----HVKVFDMKSRV--ILRQLYAHQAPVHV 115 (487)
T ss_pred ecccEEEEEecchhhhhh--hHHhhccceeEEEeecCCeEEEccCCcC-----cEEEeccccHH--HHHHHhhccCceeE
Confidence 445567777765543111 0111 1122222 223799999998765 48889954421 111111 11111
Q ss_pred cEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCcee-eccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEE
Q psy2979 239 PAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQ-DLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYH 317 (400)
Q Consensus 239 ~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd 317 (400)
--....++.+++.|+. +. .+..+|..+..-+ ++..-........+...+++|++.||+ ...|-.||
T Consensus 116 ~~f~~~d~t~l~s~sD---d~----v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsY------Dg~vrl~D 182 (487)
T KOG0310|consen 116 TKFSPQDNTMLVSGSD---DK----VVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSY------DGKVRLWD 182 (487)
T ss_pred EEecccCCeEEEecCC---Cc----eEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCC------CceEEEEE
Confidence 1223468899999886 32 3444555544421 111111222223344457899999999 45788888
Q ss_pred CCCC-eEEEccCCcCccCcceEEEE-C-CEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 318 IAEN-TWEYKSPMKEKRYRPGIAVI-D-GKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 318 ~~~~-~W~~~~~~~~~~~~~~~~~~-~-~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
.... .|.. .+..+..--.++.+ + ..|-..||. +|-++|..++
T Consensus 183 tR~~~~~v~--elnhg~pVe~vl~lpsgs~iasAgGn--------~vkVWDl~~G 227 (487)
T KOG0310|consen 183 TRSLTSRVV--ELNHGCPVESVLALPSGSLIASAGGN--------SVKVWDLTTG 227 (487)
T ss_pred eccCCceeE--EecCCCceeeEEEcCCCCEEEEcCCC--------eEEEEEecCC
Confidence 8776 4433 22221111123333 3 344445553 5666676543
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=95.52 E-value=2.3 Score=40.31 Aligned_cols=146 Identities=12% Similarity=0.045 Sum_probs=81.0
Q ss_pred CeEEEEeCCCCceEEccCCCCcccccEEEEeCC-EEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEE
Q psy2979 214 DSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEG-MLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICA 292 (400)
Q Consensus 214 ~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~ 292 (400)
..++.+|..+++...+...+....... ..-++ .|++.... ++ ...++.+|..+...+.+......... ....
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~~~-~spDg~~l~~~~~~---~~--~~~i~~~d~~~~~~~~l~~~~~~~~~-~~~s 286 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGAPA-FSPDGSKLAVSLSK---DG--NPDIYVMDLDGKQLTRLTNGPGIDTE-PSWS 286 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccceE-ECCCCCEEEEEECC---CC--CccEEEEECCCCCEEECCCCCCCCCC-EEEC
Confidence 578999999887766655443322222 22244 56655433 22 24789999988887777543221111 1112
Q ss_pred ECC-eEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceE-EEECCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 293 LDS-CIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGI-AVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 293 ~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
-++ +|++.....+ ...++.+|..++++..+.... ...... ..-+++.+++... .. ....++.+|+.++.
T Consensus 287 ~dg~~l~~~s~~~g----~~~iy~~d~~~~~~~~l~~~~--~~~~~~~~spdg~~i~~~~~-~~--~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 287 PDGKSIAFTSDRGG----SPQIYMMDADGGEVRRLTFRG--GYNASPSWSPDGDLIAFVHR-EG--GGFNIAVMDLDGGG 357 (417)
T ss_pred CCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCC--CCccCeEECCCCCEEEEEEc-cC--CceEEEEEeCCCCC
Confidence 244 4544432211 347999999888887665322 111122 2225555555443 21 23579999999887
Q ss_pred EEEec
Q psy2979 371 WEIMS 375 (400)
Q Consensus 371 W~~~~ 375 (400)
++.+.
T Consensus 358 ~~~l~ 362 (417)
T TIGR02800 358 ERVLT 362 (417)
T ss_pred eEEcc
Confidence 77665
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=2.5 Score=40.39 Aligned_cols=147 Identities=14% Similarity=0.108 Sum_probs=80.4
Q ss_pred CCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEE
Q psy2979 213 LDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICA 292 (400)
Q Consensus 213 ~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~ 292 (400)
...++.+|..+++-..+...+.........--+.+|++.... ++ ...++.+|..+...+.+..-..... .....
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~---~g--~~~Iy~~d~~~g~~~~lt~~~~~~~-~~~~s 300 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSR---DG--NPEIYVMDLGSRQLTRLTNHFGIDT-EPTWA 300 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeC---CC--CceEEEEECCCCCeEECccCCCCcc-ceEEC
Confidence 356899999998887776654322222222223456554332 22 2479999998887766643221111 11222
Q ss_pred ECCe-EEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEE-EE-CCEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 293 LDSC-IYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIA-VI-DGKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 293 ~~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~-~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
-+++ |+......+ ...++.+|..+++++.+.... ....... .- +++|++..+. + ....++.+|+.++
T Consensus 301 pDG~~l~f~sd~~g----~~~iy~~dl~~g~~~~lt~~g--~~~~~~~~SpDG~~Ia~~~~~-~---~~~~I~v~d~~~g 370 (433)
T PRK04922 301 PDGKSIYFTSDRGG----RPQIYRVAASGGSAERLTFQG--NYNARASVSPDGKKIAMVHGS-G---GQYRIAVMDLSTG 370 (433)
T ss_pred CCCCEEEEEECCCC----CceEEEEECCCCCeEEeecCC--CCccCEEECCCCCEEEEEECC-C---CceeEEEEECCCC
Confidence 2454 444432211 347899998888877764221 1221111 22 4456555432 2 1247999999988
Q ss_pred cEEEec
Q psy2979 370 SWEIMS 375 (400)
Q Consensus 370 ~W~~~~ 375 (400)
+.+.+.
T Consensus 371 ~~~~Lt 376 (433)
T PRK04922 371 SVRTLT 376 (433)
T ss_pred CeEECC
Confidence 887664
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.75 Score=45.08 Aligned_cols=119 Identities=17% Similarity=0.273 Sum_probs=71.0
Q ss_pred EEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCc--eeeccCCCCCc--------eeeeEEEECCeEEEEcCcCCCCCC
Q psy2979 240 AVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ--WQDLAPMLIPR--------SGAAICALDSCIYVLGGWHASTEN 309 (400)
Q Consensus 240 ~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r--------~~~~~~~~~~~iyv~GG~~~~~~~ 309 (400)
+-++.++.||+.... ..++++|..+.+ |+.-...+... ...+.+..+++||+...
T Consensus 64 tPvv~~g~vyv~s~~--------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~------- 128 (527)
T TIGR03075 64 QPLVVDGVMYVTTSY--------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL------- 128 (527)
T ss_pred CCEEECCEEEEECCC--------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-------
Confidence 345678999986543 258888887654 87654322111 12234566888887543
Q ss_pred CCeEEEEECCCCe--EEEcc-CCcCc-cCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCc--EEEe
Q psy2979 310 TNRVECYHIAENT--WEYKS-PMKEK-RYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS--WEIM 374 (400)
Q Consensus 310 ~~~v~~yd~~~~~--W~~~~-~~~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~ 374 (400)
...+.++|..+++ |+.-. ..... ....+-++.+++||+.... ........|..||.++++ |+.-
T Consensus 129 dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~-~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 129 DARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISG-GEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecc-cccCCCcEEEEEECCCCceeEecc
Confidence 4579999998875 87532 22111 1222345568888775332 222234679999999874 7754
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=95.30 E-value=2.4 Score=39.16 Aligned_cols=258 Identities=16% Similarity=0.131 Sum_probs=125.6
Q ss_pred EEeccCCC-cccceEEEEEcCCCceEEccCCcccceeeeEEE-ECCeEEEEEe----ecCEEEEEECC--CCCeEEccCC
Q psy2979 114 AVGGEDDK-VVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVV-SGRNTIYCLD----IVDIVYVAASM--HKILHSLGSL 185 (400)
Q Consensus 114 ~~gg~~~~-~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~-~~~~~iyv~~----~~~~~~~yd~~--~~~w~~~~~~ 185 (400)
++|++... ..--....||..++++..+......-...-++. -++..||+.. ....+..|... +++.+.+...
T Consensus 3 ~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~ 82 (345)
T PF10282_consen 3 YVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSV 82 (345)
T ss_dssp EEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEE
T ss_pred EEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeee
Confidence 45555431 112234456678888876654332222122333 2344388883 34466555544 4677777665
Q ss_pred CC-cceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCC-ceEEcc---------CC---CCcccccEEEEe--CCE
Q psy2979 186 KF-DFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKN-EWSYIE---------PM---KLAVTSPAVVAH--EGM 247 (400)
Q Consensus 186 ~~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~---------~l---~~~~~~~~~~~~--~~~ 247 (400)
+. ...-+.++.- +..+|+.--. ..++..|++..+ +-.... +- ...-.-|.+... ++.
T Consensus 83 ~~~g~~p~~i~~~~~g~~l~vany~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~ 157 (345)
T PF10282_consen 83 PSGGSSPCHIAVDPDGRFLYVANYG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRF 157 (345)
T ss_dssp EESSSCEEEEEECTTSSEEEEEETT-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSE
T ss_pred ccCCCCcEEEEEecCCCEEEEEEcc-----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCE
Confidence 53 2322333332 4567775221 245777777653 222211 11 122223343333 356
Q ss_pred EEEEcCccccCCCCcceEEEEeCCCCc--eeeccC--CC---CCceeeeEEEEC-CeEEEEcCcCCCCCCCCeEEEEECC
Q psy2979 248 LYVTGGAILEDGDGIEQVQRYNPKVNQ--WQDLAP--ML---IPRSGAAICALD-SCIYVLGGWHASTENTNRVECYHIA 319 (400)
Q Consensus 248 iyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~~~~--~~---~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~v~~yd~~ 319 (400)
+|+..-. .+.++.|+..... ...... ++ .|| |.+..-+ ..+|++.-. .++|..|+..
T Consensus 158 v~v~dlG-------~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR--h~~f~pdg~~~Yv~~e~------s~~v~v~~~~ 222 (345)
T PF10282_consen 158 VYVPDLG-------ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR--HLAFSPDGKYAYVVNEL------SNTVSVFDYD 222 (345)
T ss_dssp EEEEETT-------TTEEEEEEE-TTS-TEEEEEEEECSTTSSEE--EEEE-TTSSEEEEEETT------TTEEEEEEEE
T ss_pred EEEEecC-------CCEEEEEEEeCCCceEEEeeccccccCCCCc--EEEEcCCcCEEEEecCC------CCcEEEEeec
Confidence 7776432 4578888876665 544322 22 333 2233333 478898765 4555555544
Q ss_pred --CCeEEEcc---CCcCcc---CcceEEEE---CCEEEEEcCccCCCCCCCeEEEEEC--CCCcEEEecCCCC-CCCcee
Q psy2979 320 --ENTWEYKS---PMKEKR---YRPGIAVI---DGKIYVLGGEEGWDGYHDSIECYDV--DNDSWEIMSHLPS-ARSWLG 385 (400)
Q Consensus 320 --~~~W~~~~---~~~~~~---~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~--~~~~W~~~~~~~~-~r~~~~ 385 (400)
++.++.+. .+|... ...+...+ +..||+.-.. .+.|.+|+. ++++.+.+...+. +..=..
T Consensus 223 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~------~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~ 296 (345)
T PF10282_consen 223 PSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG------SNSISVFDLDPATGTLTLVQTVPTGGKFPRH 296 (345)
T ss_dssp TTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT------TTEEEEEEECTTTTTEEEEEEEEESSSSEEE
T ss_pred ccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc------CCEEEEEEEecCCCceEEEEEEeCCCCCccE
Confidence 77766654 444321 12333334 4568886532 467777776 5566766655443 222233
Q ss_pred eEEEcccccccc
Q psy2979 386 CVPLQIHKSQFV 397 (400)
Q Consensus 386 ~~~~~~~~~~~~ 397 (400)
+++-.+..++++
T Consensus 297 ~~~s~~g~~l~V 308 (345)
T PF10282_consen 297 FAFSPDGRYLYV 308 (345)
T ss_dssp EEE-TTSSEEEE
T ss_pred EEEeCCCCEEEE
Confidence 444444444444
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=95.28 E-value=1.2 Score=43.81 Aligned_cols=116 Identities=15% Similarity=0.218 Sum_probs=69.1
Q ss_pred EEECCEEEEEcccCCCCCCCeEEEEeCCCC--ceEEccCCCCcc--------cccEEEEeCCEEEEEcCccccCCCCcce
Q psy2979 195 AMLDGFVYAVGGWDGSCRLDSVERYDPTKN--EWSYIEPMKLAV--------TSPAVVAHEGMLYVTGGAILEDGDGIEQ 264 (400)
Q Consensus 195 ~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~l~~~~--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 264 (400)
++.++.||+.... ..+..+|..++ .|+.-...+... ...+.++.+++||+.... ..
T Consensus 66 vv~~g~vyv~s~~------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d--------g~ 131 (527)
T TIGR03075 66 LVVDGVMYVTTSY------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD--------AR 131 (527)
T ss_pred EEECCEEEEECCC------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCC--------CE
Confidence 4568999986442 35888898876 487654433211 122346678888875332 36
Q ss_pred EEEEeCCCCc--eeecc-CCCCC-ceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCe--EEE
Q psy2979 265 VQRYNPKVNQ--WQDLA-PMLIP-RSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENT--WEY 325 (400)
Q Consensus 265 v~~yd~~~~~--W~~~~-~~~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~ 325 (400)
+.++|..+.+ |+.-. ..... ....+-++.++.||+-........ ...+..||.++++ |+.
T Consensus 132 l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~-~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 132 LVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGV-RGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred EEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCC-CcEEEEEECCCCceeEec
Confidence 8999998776 86542 22111 122334556888777533222222 4579999998885 764
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.27 E-value=2.9 Score=39.99 Aligned_cols=184 Identities=15% Similarity=0.105 Sum_probs=96.5
Q ss_pred cCEEEEEECCCCCeEEccCCCCcceeeeEEEECC-EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe
Q psy2979 166 VDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDG-FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH 244 (400)
Q Consensus 166 ~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~ 244 (400)
...++.+|..+++-..+...+...... ...-++ +|++....++ ...++.+|+.+++...+..-.......+ ..-
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~~~~~-~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g~~~~lt~~~~~~~~~~-~sp 301 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGINGAP-SFSPDGRRLALTLSRDG---NPEIYVMDLGSRQLTRLTNHFGIDTEPT-WAP 301 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCCccCc-eECCCCCEEEEEEeCCC---CceEEEEECCCCCeEECccCCCCccceE-ECC
Confidence 356888999888777666543211111 111234 5654432222 2578999999888766644322111112 222
Q ss_pred CC-EEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeee-EEEECC-eEEEEcCcCCCCCCCCeEEEEECCCC
Q psy2979 245 EG-MLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAA-ICALDS-CIYVLGGWHASTENTNRVECYHIAEN 321 (400)
Q Consensus 245 ~~-~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~-~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~ 321 (400)
++ .|+..... .+ ...++.+|..+.+++.+..-. ..... ...-++ .|++..+. . . ...++.+|+.++
T Consensus 302 DG~~l~f~sd~---~g--~~~iy~~dl~~g~~~~lt~~g--~~~~~~~~SpDG~~Ia~~~~~-~--~-~~~I~v~d~~~g 370 (433)
T PRK04922 302 DGKSIYFTSDR---GG--RPQIYRVAASGGSAERLTFQG--NYNARASVSPDGKKIAMVHGS-G--G-QYRIAVMDLSTG 370 (433)
T ss_pred CCCEEEEEECC---CC--CceEEEEECCCCCeEEeecCC--CCccCEEECCCCCEEEEEECC-C--C-ceeEEEEECCCC
Confidence 44 45544333 22 247899998888877764211 11111 222244 55554432 1 1 347999999988
Q ss_pred eEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 322 TWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 322 ~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
+...+..-+.. ..+ ...-+|+.+++... . .....++.+|.....
T Consensus 371 ~~~~Lt~~~~~-~~p-~~spdG~~i~~~s~-~--~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 371 SVRTLTPGSLD-ESP-SFAPNGSMVLYATR-E--GGRGVLAAVSTDGRV 414 (433)
T ss_pred CeEECCCCCCC-CCc-eECCCCCEEEEEEe-c--CCceEEEEEECCCCc
Confidence 88876543211 111 22335665454433 2 123578889886543
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=95.25 E-value=1.5 Score=40.37 Aligned_cols=243 Identities=12% Similarity=0.011 Sum_probs=110.5
Q ss_pred ccceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEEE--CCE
Q psy2979 123 VLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML--DGF 200 (400)
Q Consensus 123 ~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~--~~~ 200 (400)
....++..|+.+++-.+|+..+.....-+.+..++..+|.+.....++..|..+.+=+.+-..|..-...+..++ ++.
T Consensus 58 g~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t 137 (386)
T PF14583_consen 58 GNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCT 137 (386)
T ss_dssp SS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSS
T ss_pred CCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCcc
Confidence 456789999999999999877643332233444444365556667889999988876665555554443333333 233
Q ss_pred EEEEcccC------------------CCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE-eCCEE--EEEcCccccCC
Q psy2979 201 VYAVGGWD------------------GSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA-HEGML--YVTGGAILEDG 259 (400)
Q Consensus 201 iyv~GG~~------------------~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~~~~i--yv~GG~~~~~~ 259 (400)
.+ +|=.. .....+.+...|+.+++.+.+-.-.. --+|--.. .+..+ |+--|-- +.
T Consensus 138 ~~-~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~-wlgH~~fsP~dp~li~fCHEGpw--~~ 213 (386)
T PF14583_consen 138 KL-VGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTD-WLGHVQFSPTDPTLIMFCHEGPW--DL 213 (386)
T ss_dssp EE-EEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS--EEEEEEETTEEEEEEEEE-S-T--TT
T ss_pred EE-EEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCc-cccCcccCCCCCCEEEEeccCCc--ce
Confidence 32 22110 01334556777888887665522111 01111111 12233 3333320 11
Q ss_pred CCcceEEEEeCCCCceeecc-CCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceE
Q psy2979 260 DGIEQVQRYNPKVNQWQDLA-PMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGI 338 (400)
Q Consensus 260 ~~~~~v~~yd~~~~~W~~~~-~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~ 338 (400)
- -..+|..|........+. .++....+|---..+|..+.+-+...... ..-+..||+.+..=+.+..+| ...|-.
T Consensus 214 V-d~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~-~~~i~~~d~~t~~~~~~~~~p--~~~H~~ 289 (386)
T PF14583_consen 214 V-DQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQ-DFWIAGYDPDTGERRRLMEMP--WCSHFM 289 (386)
T ss_dssp S-S-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT---EEEEEE-TTT--EEEEEEE---SEEEEE
T ss_pred e-ceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCC-ceEEEeeCCCCCCceEEEeCC--ceeeeE
Confidence 0 237888888766666554 34444455655666665444433322222 456888999988644454444 456667
Q ss_pred EEECCEEEEEcCccCCCC----------CCCeEEEEECCCCcEEE
Q psy2979 339 AVIDGKIYVLGGEEGWDG----------YHDSIECYDVDNDSWEI 373 (400)
Q Consensus 339 ~~~~~~lyv~GG~~~~~~----------~~~~v~~yd~~~~~W~~ 373 (400)
...+|++++--|.+.... ...-++.++++++.-..
T Consensus 290 ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~ 334 (386)
T PF14583_consen 290 SSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRK 334 (386)
T ss_dssp E-TTSSEEEEEE-------------------EEEEEETTTTEEEE
T ss_pred EcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceee
Confidence 777899888655421111 11246667887765443
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.24 E-value=2 Score=38.83 Aligned_cols=228 Identities=17% Similarity=0.136 Sum_probs=105.9
Q ss_pred CcccceEEEEEcCCCceEEccCCcc-cce-----eeeEEE-ECCeEEEEE--eecCEEEEEECCCCCeEEccCCC-----
Q psy2979 121 KVVLRSVEGFCVKTKVWKTLSCLPF-AIS-----KHGLVV-SGRNTIYCL--DIVDIVYVAASMHKILHSLGSLK----- 186 (400)
Q Consensus 121 ~~~~~~~~~yd~~~~~w~~~~~~~~-~~~-----~~~~~~-~~~~~iyv~--~~~~~~~~yd~~~~~w~~~~~~~----- 186 (400)
+....-++.||..+-.-..=-.+|. +|. .+..+. -+++.+|+. ....++-..|...++....-+.|
T Consensus 63 G~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~i 142 (342)
T PF06433_consen 63 GERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLI 142 (342)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEE
T ss_pred ccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEE
Confidence 4455678899999875321112222 132 122333 366657777 55667888899888765433322
Q ss_pred --CcceeeeEEEECCEEEEEc-ccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEE--cCccccCCCC
Q psy2979 187 --FDFDVSGIAMLDGFVYAVG-GWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVT--GGAILEDGDG 261 (400)
Q Consensus 187 --~~r~~~~~~~~~~~iyv~G-G~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~--GG~~~~~~~~ 261 (400)
.+-..|++.+-+|.+..+. +.++.........|++..+-.-.-+.....-.......++|++|-+ +|..
T Consensus 143 yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~------ 216 (342)
T PF06433_consen 143 YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS------ 216 (342)
T ss_dssp EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS------
T ss_pred EecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc------
Confidence 1112233333344443331 1122222333456777665221111111111122335678888874 3321
Q ss_pred cceEEEEeCCC-----CceeeccCCCCCceeee-EEEE--CCeEEEEcC--cCC-CCCCCCeEEEEECCCCeEEEccCCc
Q psy2979 262 IEQVQRYNPKV-----NQWQDLAPMLIPRSGAA-ICAL--DSCIYVLGG--WHA-STENTNRVECYHIAENTWEYKSPMK 330 (400)
Q Consensus 262 ~~~v~~yd~~~-----~~W~~~~~~~~~r~~~~-~~~~--~~~iyv~GG--~~~-~~~~~~~v~~yd~~~~~W~~~~~~~ 330 (400)
..-...+...+ ..|..-. .. ++.. .++||+.-- ..+ .......||.||+++++=..--+++
T Consensus 217 ~~~~~~~~~~t~~e~~~~WrPGG--------~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~ 288 (342)
T PF06433_consen 217 AKFGKPWSLLTDAEKADGWRPGG--------WQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE 288 (342)
T ss_dssp EEEEEEEESS-HHHHHTTEEE-S--------SS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE
T ss_pred ccccCcccccCccccccCcCCcc--------eeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC
Confidence 11122232222 3455432 22 2222 678888742 111 1111568999999999743222222
Q ss_pred CccCcceEEEE-CC--EEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 331 EKRYRPGIAVI-DG--KIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 331 ~~~~~~~~~~~-~~--~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
.+ .-++.+- ++ .||.+-+. ...+.+||..+++
T Consensus 289 ~~--~~Si~Vsqd~~P~L~~~~~~------~~~l~v~D~~tGk 323 (342)
T PF06433_consen 289 HP--IDSIAVSQDDKPLLYALSAG------DGTLDVYDAATGK 323 (342)
T ss_dssp EE--ESEEEEESSSS-EEEEEETT------TTEEEEEETTT--
T ss_pred Cc--cceEEEccCCCcEEEEEcCC------CCeEEEEeCcCCc
Confidence 22 2133333 33 46655332 2579999999984
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >smart00284 OLF Olfactomedin-like domains | Back alignment and domain information |
|---|
Probab=95.21 E-value=1.9 Score=37.49 Aligned_cols=183 Identities=17% Similarity=0.139 Sum_probs=105.2
Q ss_pred cEEEEEeccCCCcccceEEEEE----cCCCceEEccCCcccceeeeEEEECCeEEEEE-eecCEEEEEECCCCCeEEccC
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFC----VKTKVWKTLSCLPFAISKHGLVVSGRNTIYCL-DIVDIVYVAASMHKILHSLGS 184 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd----~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~ 184 (400)
+.+++..+.. ...+.+..|. ...+++.+.-.||.+..+.+.++.+|. +|.- ..+..+..||..+++-.....
T Consensus 35 ~~~wv~~~~~--~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngs-lYY~~~~s~~iiKydL~t~~v~~~~~ 111 (255)
T smart00284 35 SLYWYMPLNT--RVLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGS-LYFNKFNSHDICRFDLTTETYQKEPL 111 (255)
T ss_pred ceEEEEcccc--CCCcEEEEecCHHHHhccCCceEEECCCccccccEEEECce-EEEEecCCccEEEEECCCCcEEEEEe
Confidence 6788876542 1223444443 333444333356777888889999999 8887 455789999999988754444
Q ss_pred CCCc----c--------eeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCC----CceEEccCCCCcccccEEEEeCCEE
Q psy2979 185 LKFD----F--------DVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTK----NEWSYIEPMKLAVTSPAVVAHEGML 248 (400)
Q Consensus 185 ~~~~----r--------~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~----~~W~~~~~l~~~~~~~~~~~~~~~i 248 (400)
+|.+ + ...-+++-++-|+|+=........--+.+.||.+ ++|.. +.+....+.+. .+=|.+
T Consensus 112 Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T--~~~k~sa~naF-mvCGvL 188 (255)
T smart00284 112 LNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWIT--TYNKRSASNAF-MICGIL 188 (255)
T ss_pred cCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEc--CCCcccccccE-EEeeEE
Confidence 4432 1 1223455566777774443332223345667764 35654 34444433333 334588
Q ss_pred EEEcCccccCCCCcceEEEEeCCCCceeecc-CCCCCceeeeEEEE---CCeEEEEc
Q psy2979 249 YVTGGAILEDGDGIEQVQRYNPKVNQWQDLA-PMLIPRSGAAICAL---DSCIYVLG 301 (400)
Q Consensus 249 yv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~r~~~~~~~~---~~~iyv~G 301 (400)
|++-.. ......-.+.||+.+++=..+. +++.+...+++..+ +.+||+..
T Consensus 189 Y~~~s~---~~~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~wd 242 (255)
T smart00284 189 YVTRSL---GSKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLYAWN 242 (255)
T ss_pred EEEccC---CCCCcEEEEEEECCCCccceeeeeeccccccceeceeCCCCCeEEEEe
Confidence 988532 1111345788999887644332 34444445555555 56777765
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.09 E-value=2.1 Score=37.30 Aligned_cols=194 Identities=12% Similarity=0.085 Sum_probs=102.5
Q ss_pred eEEEEEcCCCceEEccCC-cccceeeeEEEE--CCeEEEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEE
Q psy2979 126 SVEGFCVKTKVWKTLSCL-PFAISKHGLVVS--GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVY 202 (400)
Q Consensus 126 ~~~~yd~~~~~w~~~~~~-~~~~~~~~~~~~--~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iy 202 (400)
.+..+|+++...++.+-. ..+-..--.++. .+. +++......-=..||.++.-+..+.+.-+--+-.++.-++.+|
T Consensus 125 aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~-lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvw 203 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGN-LWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVW 203 (353)
T ss_pred eeEEecCcccceEEeecccccCCCcccceeeCCCcc-EEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEE
Confidence 677888888776655411 111111112222 223 4444222222256777776555554432223333444588888
Q ss_pred EEcccCCCCCCCeEEEEeCCCCceEEccCCCCccccc---EEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeecc
Q psy2979 203 AVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSP---AVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLA 279 (400)
Q Consensus 203 v~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~---~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~ 279 (400)
+..=. -+-+-+.||.+..=+.++. |.....- .-+.--+.+.+.--. ..++.+|||.+.+|.+-+
T Consensus 204 yasla-----gnaiaridp~~~~aev~p~-P~~~~~gsRriwsdpig~~wittwg-------~g~l~rfdPs~~sW~eyp 270 (353)
T COG4257 204 YASLA-----GNAIARIDPFAGHAEVVPQ-PNALKAGSRRIWSDPIGRAWITTWG-------TGSLHRFDPSVTSWIEYP 270 (353)
T ss_pred EEecc-----ccceEEcccccCCcceecC-CCcccccccccccCccCcEEEeccC-------CceeeEeCcccccceeee
Confidence 76211 1446677887774444432 3221111 111123556665211 347999999999999874
Q ss_pred -CCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEEC
Q psy2979 280 -PMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVID 342 (400)
Q Consensus 280 -~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~ 342 (400)
|-..+|-...-+--.+++++.--. .+.+.+|||++.+.+.++ .+|-..+...++
T Consensus 271 LPgs~arpys~rVD~~grVW~sea~------agai~rfdpeta~ftv~p---~pr~n~gn~ql~ 325 (353)
T COG4257 271 LPGSKARPYSMRVDRHGRVWLSEAD------AGAIGRFDPETARFTVLP---IPRPNSGNIQLD 325 (353)
T ss_pred CCCCCCCcceeeeccCCcEEeeccc------cCceeecCcccceEEEec---CCCCCCCceecc
Confidence 222444443334446677774322 678999999999988764 344444444443
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=95.07 E-value=6 Score=42.47 Aligned_cols=196 Identities=12% Similarity=0.145 Sum_probs=108.6
Q ss_pred eeEEEE--CCeEEEEEee-cCEEEEEECCCCCeEEccCC-------CC--------cceeeeEEEE--CCEEEEEcccCC
Q psy2979 150 HGLVVS--GRNTIYCLDI-VDIVYVAASMHKILHSLGSL-------KF--------DFDVSGIAML--DGFVYAVGGWDG 209 (400)
Q Consensus 150 ~~~~~~--~~~~iyv~~~-~~~~~~yd~~~~~w~~~~~~-------~~--------~r~~~~~~~~--~~~iyv~GG~~~ 209 (400)
+++++. ++. ||+.+. .+.+..+|+.++.-..+..- .. -..-..++.- ++.+||....
T Consensus 627 ~GIavd~~gn~-LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-- 703 (1057)
T PLN02919 627 QGLAYNAKKNL-LYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-- 703 (1057)
T ss_pred cEEEEeCCCCE-EEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC--
Confidence 566665 345 888844 45688899877665544210 00 0011123332 5788887432
Q ss_pred CCCCCeEEEEeCCCCceEEccCC----------C--Cc-ccccEEEEe--CCEEEEEcCccccCCCCcceEEEEeCCCCc
Q psy2979 210 SCRLDSVERYDPTKNEWSYIEPM----------K--LA-VTSPAVVAH--EGMLYVTGGAILEDGDGIEQVQRYNPKVNQ 274 (400)
Q Consensus 210 ~~~~~~v~~yd~~~~~W~~~~~l----------~--~~-~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 274 (400)
...+++||+.++.......- + .. ..-.+++.. ++.|||.... .+.+.+||+.+..
T Consensus 704 ---~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-------n~~Irv~D~~tg~ 773 (1057)
T PLN02919 704 ---QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-------SSSIRALDLKTGG 773 (1057)
T ss_pred ---CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC-------CCeEEEEECCCCc
Confidence 25688888877755433210 0 00 011123332 3459998665 3589999988765
Q ss_pred eeecc---C-CCC--------------C--ceeeeEEE-ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcC--
Q psy2979 275 WQDLA---P-MLI--------------P--RSGAAICA-LDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKE-- 331 (400)
Q Consensus 275 W~~~~---~-~~~--------------~--r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-- 331 (400)
.+.+. + .+. . ..-.+++. -+|.+|+.... ...|.+||+.++....+.....
T Consensus 774 ~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~------N~rIrviD~~tg~v~tiaG~G~~G 847 (1057)
T PLN02919 774 SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY------NHKIKKLDPATKRVTTLAGTGKAG 847 (1057)
T ss_pred EEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC------CCEEEEEECCCCeEEEEeccCCcC
Confidence 33221 0 000 0 00122222 36789998765 5689999999988776543211
Q ss_pred ---------ccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 332 ---------KRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 332 ---------~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
....+..+++ +|++||.-.. .+.|.++|+.+++
T Consensus 848 ~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~------Nn~Irvid~~~~~ 891 (1057)
T PLN02919 848 FKDGKALKAQLSEPAGLALGENGRLFVADTN------NSLIRYLDLNKGE 891 (1057)
T ss_pred CCCCcccccccCCceEEEEeCCCCEEEEECC------CCEEEEEECCCCc
Confidence 1112333333 6889998654 3578899998875
|
|
| >cd00094 HX Hemopexin-like repeats | Back alignment and domain information |
|---|
Probab=94.94 E-value=1.9 Score=36.07 Aligned_cols=145 Identities=17% Similarity=0.146 Sum_probs=76.5
Q ss_pred eEEEECCeEEEEEeecCEEEEEECCCCC--eEEc----cCCCCcceeeeEEEEC-CEEEEEcccCCCCCCCeEEEEeCCC
Q psy2979 151 GLVVSGRNTIYCLDIVDIVYVAASMHKI--LHSL----GSLKFDFDVSGIAMLD-GFVYAVGGWDGSCRLDSVERYDPTK 223 (400)
Q Consensus 151 ~~~~~~~~~iyv~~~~~~~~~yd~~~~~--w~~~----~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~~ 223 (400)
++....+. +|++.. +.+|.++..... -..+ +.+|. .-..+....+ +++|++-| +..++|+..+
T Consensus 11 A~~~~~g~-~y~FkG-~~~w~~~~~~~~~~p~~I~~~w~~~p~-~IDAa~~~~~~~~~yfFkg-------~~yw~~~~~~ 80 (194)
T cd00094 11 AVTTLRGE-LYFFKG-RYFWRLSPGKPPGSPFLISSFWPSLPS-PVDAAFERPDTGKIYFFKG-------DKYWVYTGKN 80 (194)
T ss_pred eEEEeCCE-EEEEeC-CEEEEEeCCCCCCCCeEhhhhCCCCCC-CccEEEEECCCCEEEEECC-------CEEEEEcCcc
Confidence 34444566 888743 467777764211 1111 11221 1222222223 89999977 5678887664
Q ss_pred CceEE---cc--CCCC--cccccEEEEe-CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccC-------CCCCceee
Q psy2979 224 NEWSY---IE--PMKL--AVTSPAVVAH-EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAP-------MLIPRSGA 288 (400)
Q Consensus 224 ~~W~~---~~--~l~~--~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~-------~~~~r~~~ 288 (400)
..+.. +. .++. ..-..+...- ++++|++.|. ..++||..+++...--| +..+...-
T Consensus 81 ~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~---------~y~ry~~~~~~v~~~yP~~i~~~w~g~p~~id 151 (194)
T cd00094 81 LEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD---------KYWRYDEKTQKMDPGYPKLIETDFPGVPDKVD 151 (194)
T ss_pred cccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC---------EEEEEeCCCccccCCCCcchhhcCCCcCCCcc
Confidence 22211 11 1221 1112222222 6899999887 68999876665421100 01122222
Q ss_pred eEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCe
Q psy2979 289 AICAL-DSCIYVLGGWHASTENTNRVECYHIAENT 322 (400)
Q Consensus 289 ~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 322 (400)
++... ++++|++-|. .+++||..+++
T Consensus 152 aa~~~~~~~~yfF~g~--------~y~~~d~~~~~ 178 (194)
T cd00094 152 AAFRWLDGYYYFFKGD--------QYWRFDPRSKE 178 (194)
T ss_pred eeEEeCCCcEEEEECC--------EEEEEeCccce
Confidence 33334 4899999874 89999998776
|
; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=94.92 E-value=4 Score=39.73 Aligned_cols=249 Identities=10% Similarity=0.077 Sum_probs=123.6
Q ss_pred ceEEEEEcCCCc--eEEccCCcc-c--ceeeeEEEECCeEEEEEe---------ecCEEEEEECCCCC--eEEccCCC--
Q psy2979 125 RSVEGFCVKTKV--WKTLSCLPF-A--ISKHGLVVSGRNTIYCLD---------IVDIVYVAASMHKI--LHSLGSLK-- 186 (400)
Q Consensus 125 ~~~~~yd~~~~~--w~~~~~~~~-~--~~~~~~~~~~~~~iyv~~---------~~~~~~~yd~~~~~--w~~~~~~~-- 186 (400)
..+..+|..+++ |+.-...+. . ....+.++.++. +|+.. ....++.+|..+++ |+.-...+
T Consensus 120 g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~-v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~ 198 (488)
T cd00216 120 GRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKL-VIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDP 198 (488)
T ss_pred CeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCE-EEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCc
Confidence 478889998875 775322111 0 012233445555 66542 13568899998765 76432111
Q ss_pred --Ccce--------------eeeEEE--ECCEEEEEcccC------------CCCCCCeEEEEeCCCC--ceEEccCCCC
Q psy2979 187 --FDFD--------------VSGIAM--LDGFVYAVGGWD------------GSCRLDSVERYDPTKN--EWSYIEPMKL 234 (400)
Q Consensus 187 --~~r~--------------~~~~~~--~~~~iyv~GG~~------------~~~~~~~v~~yd~~~~--~W~~~~~l~~ 234 (400)
.+.. ..+.+. .++.+|+-.|.. .......+..+|..++ .|+.-...+.
T Consensus 199 ~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~ 278 (488)
T cd00216 199 NAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHD 278 (488)
T ss_pred CCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCC
Confidence 1100 011122 246777764421 0112347899999887 5875322110
Q ss_pred c---cc--ccEEEE---eCCE---EEEEcCccccCCCCcceEEEEeCCCCc--eeeccCCCCCceeeeEEEECCeEEEEc
Q psy2979 235 A---VT--SPAVVA---HEGM---LYVTGGAILEDGDGIEQVQRYNPKVNQ--WQDLAPMLIPRSGAAICALDSCIYVLG 301 (400)
Q Consensus 235 ~---~~--~~~~~~---~~~~---iyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~G 301 (400)
. +. ...+.. .++. +.++|.. + ..++.+|..+.+ |+.-.. ...++.-.+.+|+-.
T Consensus 279 ~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~---~----G~l~ald~~tG~~~W~~~~~------~~~~~~~~~~vyv~~ 345 (488)
T cd00216 279 LWDYDGPNQPSLADIKPKDGKPVPAIVHAPK---N----GFFYVLDRTTGKLISARPEV------EQPMAYDPGLVYLGA 345 (488)
T ss_pred CcccccCCCCeEEeccccCCCeeEEEEEECC---C----ceEEEEECCCCcEeeEeEee------ccccccCCceEEEcc
Confidence 0 11 111111 2332 3334444 2 368999988776 875321 011112226666643
Q ss_pred CcCC------------CCCCCCeEEEEECCCCe--EEEccCC-c------CccCcceEEEECCEEEEEcCccCCCCCCCe
Q psy2979 302 GWHA------------STENTNRVECYHIAENT--WEYKSPM-K------EKRYRPGIAVIDGKIYVLGGEEGWDGYHDS 360 (400)
Q Consensus 302 G~~~------------~~~~~~~v~~yd~~~~~--W~~~~~~-~------~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~ 360 (400)
.... ... ...+..+|..+++ |+.-... . .+......++.++.||+.. . + ..
T Consensus 346 ~~~~~~~~~~~~~~~~~~~-~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~-~-d-----G~ 417 (488)
T cd00216 346 FHIPLGLPPQKKKRCKKPG-KGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGA-A-D-----GY 417 (488)
T ss_pred ccccccCcccccCCCCCCC-ceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEEC-C-C-----Ce
Confidence 2110 111 3578899988774 8764320 0 1112223445566666644 3 2 46
Q ss_pred EEEEECCCCc--EEEecCCCCCCCceeeE-EEcccccccc
Q psy2979 361 IECYDVDNDS--WEIMSHLPSARSWLGCV-PLQIHKSQFV 397 (400)
Q Consensus 361 v~~yd~~~~~--W~~~~~~~~~r~~~~~~-~~~~~~~~~~ 397 (400)
++.+|.++++ |+. +++.+....-++ ..++++|+..
T Consensus 418 l~ald~~tG~~lW~~--~~~~~~~a~P~~~~~~g~~yv~~ 455 (488)
T cd00216 418 FRAFDATTGKELWKF--RTPSGIQATPMTYEVNGKQYVGV 455 (488)
T ss_pred EEEEECCCCceeeEE--ECCCCceEcCEEEEeCCEEEEEE
Confidence 8999998875 774 344444333332 4466666543
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=94.85 E-value=2.8 Score=37.65 Aligned_cols=235 Identities=14% Similarity=0.197 Sum_probs=103.9
Q ss_pred CceEEccC-Cccc--ceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccC-CCCcceeeeEEEE-CCEEEEEcccCC
Q psy2979 135 KVWKTLSC-LPFA--ISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGS-LKFDFDVSGIAML-DGFVYAVGGWDG 209 (400)
Q Consensus 135 ~~w~~~~~-~~~~--~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~-~~~~r~~~~~~~~-~~~iyv~GG~~~ 209 (400)
..|..... .+.+ ....++...++. .|++....-++.-.-.-.+|++++- .+.|-..+.+..+ ++.++++|..
T Consensus 47 ~tW~~~~~~~~~~~~~~l~~I~f~~~~-g~ivG~~g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~-- 123 (302)
T PF14870_consen 47 KTWQPVSLDLDNPFDYHLNSISFDGNE-GWIVGEPGLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR-- 123 (302)
T ss_dssp SS-EE-----S-----EEEEEEEETTE-EEEEEETTEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--
T ss_pred ccccccccCCCccceeeEEEEEecCCc-eEEEcCCceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC--
Confidence 36887642 2222 223445556776 8887554555555556678999862 2334344444444 5567766542
Q ss_pred CCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeee
Q psy2979 210 SCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAA 289 (400)
Q Consensus 210 ~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~ 289 (400)
..+++=.-.-.+|+.+..-...-..-....-++.+++++.. | +-....|+....|+........|-...
T Consensus 124 ----G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~----G---~~~~s~~~G~~~w~~~~r~~~~riq~~ 192 (302)
T PF14870_consen 124 ----GAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSR----G---NFYSSWDPGQTTWQPHNRNSSRRIQSM 192 (302)
T ss_dssp ------EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETT----S---SEEEEE-TT-SS-EEEE--SSS-EEEE
T ss_pred ----CcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECc----c---cEEEEecCCCccceEEccCccceehhc
Confidence 34565555566899875422221111222346676666544 2 234567898888998864434443333
Q ss_pred EEEECCeEEEEcCcCCCCCCCCeEEEEE--CCCCeEEEccCCcCccCcceE--EEE--CCEEEEEcCccCCCCCCCeEEE
Q psy2979 290 ICALDSCIYVLGGWHASTENTNRVECYH--IAENTWEYKSPMKEKRYRPGI--AVI--DGKIYVLGGEEGWDGYHDSIEC 363 (400)
Q Consensus 290 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd--~~~~~W~~~~~~~~~~~~~~~--~~~--~~~lyv~GG~~~~~~~~~~v~~ 363 (400)
...-++.+++++ . -..+..=+ -....|++-. .|.....++. .++ ++.+++.||. ..+++
T Consensus 193 gf~~~~~lw~~~-~------Gg~~~~s~~~~~~~~w~~~~-~~~~~~~~~~ld~a~~~~~~~wa~gg~-------G~l~~ 257 (302)
T PF14870_consen 193 GFSPDGNLWMLA-R------GGQIQFSDDPDDGETWSEPI-IPIKTNGYGILDLAYRPPNEIWAVGGS-------GTLLV 257 (302)
T ss_dssp EE-TTS-EEEEE-T------TTEEEEEE-TTEEEEE---B--TTSS--S-EEEEEESSSS-EEEEEST-------T-EEE
T ss_pred eecCCCCEEEEe-C------CcEEEEccCCCCcccccccc-CCcccCceeeEEEEecCCCCEEEEeCC-------ccEEE
Confidence 334467887775 2 12333333 2344677622 3333333332 233 6889999986 23444
Q ss_pred EECCCCcEEEecC-CCCCCCceeeEEEccccccccc
Q psy2979 364 YDVDNDSWEIMSH-LPSARSWLGCVPLQIHKSQFVD 398 (400)
Q Consensus 364 yd~~~~~W~~~~~-~~~~r~~~~~~~~~~~~~~~~~ 398 (400)
=.-..++|++.+. -+.+-....++.+++.+-+.+|
T Consensus 258 S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG 293 (302)
T PF14870_consen 258 STDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG 293 (302)
T ss_dssp ESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-
T ss_pred eCCCCccceECccccCCCCceEEEEEcCCCceEEEC
Confidence 4445568999864 3344445666666654444443
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=3.8 Score=39.10 Aligned_cols=148 Identities=10% Similarity=0.022 Sum_probs=79.7
Q ss_pred CeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE
Q psy2979 214 DSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL 293 (400)
Q Consensus 214 ~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 293 (400)
..++.+|+.+++-+.+...+.........--+.+|++.... ++ ...++.+|..+.+.+.+..-.... ......-
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~---~g--~~~I~~~d~~tg~~~~lt~~~~~~-~~~~wSP 296 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSK---TG--SLNLYVMDLASGQIRQVTDGRSNN-TEPTWFP 296 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcC---CC--CcEEEEEECCCCCEEEccCCCCCc-CceEECC
Confidence 56888999888777766554332222222223456655332 22 236999999888877765433211 1112222
Q ss_pred CCe-EEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCE-EEEEcCccCCCCCCCeEEEEECCCCcE
Q psy2979 294 DSC-IYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGK-IYVLGGEEGWDGYHDSIECYDVDNDSW 371 (400)
Q Consensus 294 ~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-lyv~GG~~~~~~~~~~v~~yd~~~~~W 371 (400)
+++ |+...... . ...++.+|+.++.-..+...... .......-+|+ |+..+.. .+ ...++.+|+.++.+
T Consensus 297 DG~~I~f~s~~~---g-~~~Iy~~d~~~g~~~~lt~~~~~-~~~~~~SpDG~~Ia~~~~~-~g---~~~I~~~dl~~g~~ 367 (429)
T PRK03629 297 DSQNLAYTSDQA---G-RPQVYKVNINGGAPQRITWEGSQ-NQDADVSSDGKFMVMVSSN-GG---QQHIAKQDLATGGV 367 (429)
T ss_pred CCCEEEEEeCCC---C-CceEEEEECCCCCeEEeecCCCC-ccCEEECCCCCEEEEEEcc-CC---CceEEEEECCCCCe
Confidence 454 44333221 1 34789999988776665422111 11111222444 4444432 22 34789999999988
Q ss_pred EEecC
Q psy2979 372 EIMSH 376 (400)
Q Consensus 372 ~~~~~ 376 (400)
+.+..
T Consensus 368 ~~Lt~ 372 (429)
T PRK03629 368 QVLTD 372 (429)
T ss_pred EEeCC
Confidence 87753
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=3.2 Score=37.89 Aligned_cols=240 Identities=10% Similarity=0.068 Sum_probs=110.6
Q ss_pred ceEEEEEcC-CCceEEccCCcccceeeeEEEE-CCeEEEEE-eecCEEEEEECCCCC-e-EEccCCCCcceeeeEEEE-C
Q psy2979 125 RSVEGFCVK-TKVWKTLSCLPFAISKHGLVVS-GRNTIYCL-DIVDIVYVAASMHKI-L-HSLGSLKFDFDVSGIAML-D 198 (400)
Q Consensus 125 ~~~~~yd~~-~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~-~~~~~~~~yd~~~~~-w-~~~~~~~~~r~~~~~~~~-~ 198 (400)
..+..|+.. .+++......+.+...+.++.. +++.+|+. ...+.+..|+..++. . ......+....-+.++.. +
T Consensus 57 ~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~ 136 (330)
T PRK11028 57 FRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPD 136 (330)
T ss_pred CcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCC
Confidence 456667665 3456544433322222233333 44437766 335667778775321 1 112212221122333222 3
Q ss_pred -CEEEEEcccCCCCCCCeEEEEeCCCC-ceEEcc----CCCCcccccEEEEe--CCEEEEEcCccccCCCCcceEEEEeC
Q psy2979 199 -GFVYAVGGWDGSCRLDSVERYDPTKN-EWSYIE----PMKLAVTSPAVVAH--EGMLYVTGGAILEDGDGIEQVQRYNP 270 (400)
Q Consensus 199 -~~iyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~----~l~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~ 270 (400)
+.+|+..- ..+.+..||..++ ...... ..+....-+.++.. +..+|+.... .+++..||.
T Consensus 137 g~~l~v~~~-----~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-------~~~v~v~~~ 204 (330)
T PRK11028 137 NRTLWVPCL-----KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-------NSSVDVWQL 204 (330)
T ss_pred CCEEEEeeC-----CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC-------CCEEEEEEE
Confidence 46666532 2356888988763 222110 11211111223322 3467887543 246666665
Q ss_pred C--CCceee---ccCCC----CCceeeeEEEE-CC-eEEEEcCcCCCCCCCCeEEEEEC--CCCeEEEccCCcCccCcce
Q psy2979 271 K--VNQWQD---LAPML----IPRSGAAICAL-DS-CIYVLGGWHASTENTNRVECYHI--AENTWEYKSPMKEKRYRPG 337 (400)
Q Consensus 271 ~--~~~W~~---~~~~~----~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~--~~~~W~~~~~~~~~~~~~~ 337 (400)
. +.+.+. +..+| .++....+... ++ .+|+.... .+.+..|+. .+..++.+...+.......
T Consensus 205 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~------~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~ 278 (330)
T PRK11028 205 KDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT------ASLISVFSVSEDGSVLSFEGHQPTETQPRG 278 (330)
T ss_pred eCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC------CCeEEEEEEeCCCCeEEEeEEEeccccCCc
Confidence 4 344433 33232 23332222222 34 57775322 345555554 4455655554443211112
Q ss_pred EEEE--CCEEEEEcCccCCCCCCCeEEEE--ECCCCcEEEecCCCCCCCceeeEE
Q psy2979 338 IAVI--DGKIYVLGGEEGWDGYHDSIECY--DVDNDSWEIMSHLPSARSWLGCVP 388 (400)
Q Consensus 338 ~~~~--~~~lyv~GG~~~~~~~~~~v~~y--d~~~~~W~~~~~~~~~r~~~~~~~ 388 (400)
+..- +..||+.... .+.|.+| |..++.++.+...+.+..-.++.+
T Consensus 279 ~~~~~dg~~l~va~~~------~~~v~v~~~~~~~g~l~~~~~~~~g~~P~~~~~ 327 (330)
T PRK11028 279 FNIDHSGKYLIAAGQK------SHHISVYEIDGETGLLTELGRYAVGQGPMWVSV 327 (330)
T ss_pred eEECCCCCEEEEEEcc------CCcEEEEEEcCCCCcEEEccccccCCCceEEEE
Confidence 2221 4567776543 2345555 667788888877666555455544
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=94.73 E-value=7.3 Score=41.84 Aligned_cols=195 Identities=13% Similarity=0.138 Sum_probs=105.8
Q ss_pred CCeEEEEE-eecCEEEEEECCCCCeEEccCCC----------Cc--ceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEe
Q psy2979 156 GRNTIYCL-DIVDIVYVAASMHKILHSLGSLK----------FD--FDVSGIAML--DGFVYAVGGWDGSCRLDSVERYD 220 (400)
Q Consensus 156 ~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~----------~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd 220 (400)
++. +|+. ...+.+..+|+....-..+.... .. ..-++++.. ++.|||.-..+ ..+.++|
T Consensus 579 ~g~-lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n-----~~Ir~id 652 (1057)
T PLN02919 579 NNR-LFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN-----HALREID 652 (1057)
T ss_pred CCe-EEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC-----ceEEEEe
Confidence 566 9988 55567899998754332333210 01 112344443 45788874322 4578888
Q ss_pred CCCCceEEccCC-------CC-------cccc-cEEEEe--CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCC--
Q psy2979 221 PTKNEWSYIEPM-------KL-------AVTS-PAVVAH--EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPM-- 281 (400)
Q Consensus 221 ~~~~~W~~~~~l-------~~-------~~~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~-- 281 (400)
+.++.=+.+..- .. .... +.++.. ++.+||.... .+.++.||+.+........-
T Consensus 653 ~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-------~~~I~v~d~~~g~v~~~~G~G~ 725 (1057)
T PLN02919 653 FVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-------QHQIWEYNISDGVTRVFSGDGY 725 (1057)
T ss_pred cCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-------CCeEEEEECCCCeEEEEecCCc
Confidence 877654443210 00 0111 233332 6889998654 35789999877655433210
Q ss_pred --------C---CCceeeeEEEE-C-CeEEEEcCcCCCCCCCCeEEEEECCCCeEEEcc--C--CcC-------------
Q psy2979 282 --------L---IPRSGAAICAL-D-SCIYVLGGWHASTENTNRVECYHIAENTWEYKS--P--MKE------------- 331 (400)
Q Consensus 282 --------~---~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~--~--~~~------------- 331 (400)
. ....-.+++.. + +.||+.... .+.+.+||+.++....+. . .+.
T Consensus 726 ~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~ 799 (1057)
T PLN02919 726 ERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGS 799 (1057)
T ss_pred cccCCCCccccccccCccEEEEeCCCCEEEEEECC------CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchh
Confidence 0 00111223333 3 459998765 568999999876533221 0 000
Q ss_pred --ccCcc-eEEE-ECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEec
Q psy2979 332 --KRYRP-GIAV-IDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMS 375 (400)
Q Consensus 332 --~~~~~-~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 375 (400)
....+ +++. -+|.|||.... .+.|.+||+.++....+.
T Consensus 800 ~~~l~~P~Gvavd~dG~LYVADs~------N~rIrviD~~tg~v~tia 841 (1057)
T PLN02919 800 EVLLQHPLGVLCAKDGQIYVADSY------NHKIKKLDPATKRVTTLA 841 (1057)
T ss_pred hhhccCCceeeEeCCCcEEEEECC------CCEEEEEECCCCeEEEEe
Confidence 00111 2222 26789998654 357999999988777654
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=94.68 E-value=4 Score=38.63 Aligned_cols=183 Identities=10% Similarity=0.020 Sum_probs=94.0
Q ss_pred CEEEEEECCCCCeEEccCCCCcceeeeEEEECC-EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeC
Q psy2979 167 DIVYVAASMHKILHSLGSLKFDFDVSGIAMLDG-FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHE 245 (400)
Q Consensus 167 ~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~ 245 (400)
..++.+|..+++...+..........+. .-++ .|++.....+ ...++.+|+.+++.+.+...+....... ..-+
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~~~~-spDg~~l~~~~~~~~---~~~i~~~d~~~~~~~~l~~~~~~~~~~~-~s~d 288 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGAPAF-SPDGSKLAVSLSKDG---NPDIYVMDLDGKQLTRLTNGPGIDTEPS-WSPD 288 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccceEE-CCCCCEEEEEECCCC---CccEEEEECCCCCEEECCCCCCCCCCEE-ECCC
Confidence 5788899888776655543322222111 1243 5655433222 2568899999888777654332111111 1224
Q ss_pred C-EEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEE
Q psy2979 246 G-MLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWE 324 (400)
Q Consensus 246 ~-~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 324 (400)
+ .|++.... .+ ...++.+|..+..++.+..-... .......-+++.+++...... ...++.+|+.++.+.
T Consensus 289 g~~l~~~s~~---~g--~~~iy~~d~~~~~~~~l~~~~~~-~~~~~~spdg~~i~~~~~~~~---~~~i~~~d~~~~~~~ 359 (417)
T TIGR02800 289 GKSIAFTSDR---GG--SPQIYMMDADGGEVRRLTFRGGY-NASPSWSPDGDLIAFVHREGG---GFNIAVMDLDGGGER 359 (417)
T ss_pred CCEEEEEECC---CC--CceEEEEECCCCCEEEeecCCCC-ccCeEECCCCCEEEEEEccCC---ceEEEEEeCCCCCeE
Confidence 4 45554333 22 24799999988888766432211 111122335665555544321 357999999988777
Q ss_pred EccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 325 YKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
.+...... ..+ ....+++..++... .+. ...+++++...
T Consensus 360 ~l~~~~~~-~~p-~~spdg~~l~~~~~-~~~--~~~l~~~~~~g 398 (417)
T TIGR02800 360 VLTDTGLD-ESP-SFAPNGRMILYATT-RGG--RGVLGLVSTDG 398 (417)
T ss_pred EccCCCCC-CCc-eECCCCCEEEEEEe-CCC--cEEEEEEECCC
Confidence 76542211 111 22335544444333 211 24566666544
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG0783|consensus | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.015 Score=57.24 Aligned_cols=46 Identities=24% Similarity=0.346 Sum_probs=33.4
Q ss_pred eceEEEECCeEEehhhHHHhhcCcccccc--------ceeecCCCC--HH---HHHHHhh
Q psy2979 18 CDVTLCVDGSKFPAHRVVLAASSPYFKVL--------ETIRLPQLS--PY---FLHDCVE 64 (400)
Q Consensus 18 ~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m--------~~vrl~~l~--~~---~l~~~i~ 64 (400)
|||++. ||++|+||+.+|.|.++||..| ..|...+++ .+ .+++++|
T Consensus 713 ~~i~~K-DGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylY 771 (1267)
T KOG0783|consen 713 TVIKLK-DGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLY 771 (1267)
T ss_pred EEEEec-CCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHH
Confidence 444444 8899999999999999999988 344444444 44 4566777
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=94.59 E-value=3.9 Score=38.11 Aligned_cols=225 Identities=15% Similarity=0.144 Sum_probs=116.2
Q ss_pred eEEEEEcCCCc--eEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCC--CeEEccCCCCcceeeeEEEECCEE
Q psy2979 126 SVEGFCVKTKV--WKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHK--ILHSLGSLKFDFDVSGIAMLDGFV 201 (400)
Q Consensus 126 ~~~~yd~~~~~--w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~--~w~~~~~~~~~r~~~~~~~~~~~i 201 (400)
.+..+|+.+.+ |......-...........++. ||+-.....++++|+.++ .|..-.+.. ++..-..+..++.+
T Consensus 79 ~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~-~~~~~~~v~~~~~v 156 (370)
T COG1520 79 NIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS-PYYASPPVVGDGTV 156 (370)
T ss_pred cEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCC-eEEecCcEEcCcEE
Confidence 78899999887 8643221011112222333677 888865568999999654 477644432 34444455556777
Q ss_pred EEEcccCCCCCCCeEEEEeCCCC--ceEEccCC-CCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCc--ee
Q psy2979 202 YAVGGWDGSCRLDSVERYDPTKN--EWSYIEPM-KLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ--WQ 276 (400)
Q Consensus 202 yv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~l-~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~--W~ 276 (400)
|+.. ....+.+.|..++ .|+.-.+. ...+.....+..++.+|+.... . ...++.+|+.+.+ |+
T Consensus 157 ~~~s------~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~-----~-~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 157 YVGT------DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDG-----Y-DGILYALNAEDGTLKWS 224 (370)
T ss_pred EEec------CCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCC-----C-cceEEEEEccCCcEeee
Confidence 7653 1246788888865 58754332 1222222333567777765331 0 1258889986655 87
Q ss_pred eccCCCCCceee--eEEEECCeEEEEcCcCCCCCCCCeEEEEECCCC--eEEEccCCcCccCcceEE---EECCEEEEEc
Q psy2979 277 DLAPMLIPRSGA--AICALDSCIYVLGGWHASTENTNRVECYHIAEN--TWEYKSPMKEKRYRPGIA---VIDGKIYVLG 349 (400)
Q Consensus 277 ~~~~~~~~r~~~--~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~---~~~~~lyv~G 349 (400)
.-...+..+..- ......+.||+-|+.-.... ...+.++|..+. .|+.-.++.......-.+ .-+|++|+..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~-~g~~~~l~~~~G~~~W~~~~~~~~~~~~~~~~~~~~~dG~v~~~~ 303 (370)
T COG1520 225 QKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSY-GGKLLCLDADTGELIWSFPAGGSVQGSGLYTTPVAGADGKVYIGF 303 (370)
T ss_pred eeeecccCcccccccccccCceEEECCcEEEEec-CCeEEEEEcCCCceEEEEecccEeccCCeeEEeecCCCccEEEEE
Confidence 532222221111 12223344444443111111 345888887765 487755422222221111 1378888865
Q ss_pred CccCCCCCCCeEEEEEC
Q psy2979 350 GEEGWDGYHDSIECYDV 366 (400)
Q Consensus 350 G~~~~~~~~~~v~~yd~ 366 (400)
.. ........+++++.
T Consensus 304 ~~-~~~~~~~~~~~~~~ 319 (370)
T COG1520 304 TD-NDGRGSGSLYALAD 319 (370)
T ss_pred ec-cccccccceEEEec
Confidence 43 21113455667765
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=94.46 E-value=5.2 Score=38.95 Aligned_cols=236 Identities=11% Similarity=0.073 Sum_probs=119.4
Q ss_pred ceEEEEEcCCCc--eEEccCCcccc-----eeeeEEEEC-CeEEEEEeecCEEEEEECCCCC--eEEccCCCC-cc--ee
Q psy2979 125 RSVEGFCVKTKV--WKTLSCLPFAI-----SKHGLVVSG-RNTIYCLDIVDIVYVAASMHKI--LHSLGSLKF-DF--DV 191 (400)
Q Consensus 125 ~~~~~yd~~~~~--w~~~~~~~~~~-----~~~~~~~~~-~~~iyv~~~~~~~~~yd~~~~~--w~~~~~~~~-~r--~~ 191 (400)
..+..+|+.+++ |..-...+... ....+++.+ +. +|+......++.+|..+++ |+.-..... .. ..
T Consensus 71 g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~-V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ 149 (488)
T cd00216 71 SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRK-VFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMT 149 (488)
T ss_pred CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCe-EEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEec
Confidence 478888988875 87532222000 112234445 66 8887667789999998765 775443221 11 12
Q ss_pred eeEEEECCEEEEEcccCCC----CCCCeEEEEeCCCC--ceEEccCCC----Cccc--------------ccEEEE--eC
Q psy2979 192 SGIAMLDGFVYAVGGWDGS----CRLDSVERYDPTKN--EWSYIEPMK----LAVT--------------SPAVVA--HE 245 (400)
Q Consensus 192 ~~~~~~~~~iyv~GG~~~~----~~~~~v~~yd~~~~--~W~~~~~l~----~~~~--------------~~~~~~--~~ 245 (400)
.+.++.++.+|+ |..... .....+..+|..++ .|+.-...+ .+.. ..+.++ .+
T Consensus 150 ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~ 228 (488)
T cd00216 150 GAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKT 228 (488)
T ss_pred CCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCC
Confidence 233445666665 432211 12357899999877 486532111 1100 011222 25
Q ss_pred CEEEEEcCccccC--------CCC--cceEEEEeCCCCc--eeeccCCCC---Cceee--eEE---EECCe---EEEEcC
Q psy2979 246 GMLYVTGGAILED--------GDG--IEQVQRYNPKVNQ--WQDLAPMLI---PRSGA--AIC---ALDSC---IYVLGG 302 (400)
Q Consensus 246 ~~iyv~GG~~~~~--------~~~--~~~v~~yd~~~~~--W~~~~~~~~---~r~~~--~~~---~~~~~---iyv~GG 302 (400)
+.+|+-.+...+. +.. .+.++.+|..+.+ |+.-...+. -+... .+. ..++. +.++|.
T Consensus 229 g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~ 308 (488)
T cd00216 229 NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAP 308 (488)
T ss_pred CEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEEC
Confidence 7777765431000 011 4579999998765 875321110 01111 111 12332 344444
Q ss_pred cCCCCCCCCeEEEEECCCCe--EEEccCCcCccCcceEEEECCEEEEEcCccC-----------CCCCCCeEEEEECCCC
Q psy2979 303 WHASTENTNRVECYHIAENT--WEYKSPMKEKRYRPGIAVIDGKIYVLGGEEG-----------WDGYHDSIECYDVDND 369 (400)
Q Consensus 303 ~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~-----------~~~~~~~v~~yd~~~~ 369 (400)
. ...++.+|.++++ |+.-.. ......-.+.+|+-..... .......+..+|..++
T Consensus 309 ~------~G~l~ald~~tG~~~W~~~~~------~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG 376 (488)
T cd00216 309 K------NGFFYVLDRTTGKLISARPEV------EQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG 376 (488)
T ss_pred C------CceEEEEECCCCcEeeEeEee------ccccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCC
Confidence 3 4579999998886 865321 0111112266777432100 0122457899999887
Q ss_pred c--EEEe
Q psy2979 370 S--WEIM 374 (400)
Q Consensus 370 ~--W~~~ 374 (400)
+ |+.-
T Consensus 377 ~~~W~~~ 383 (488)
T cd00216 377 KVVWEKR 383 (488)
T ss_pred cEeeEee
Confidence 4 7764
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=94.41 E-value=4.3 Score=37.82 Aligned_cols=260 Identities=15% Similarity=0.102 Sum_probs=125.1
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCce-EEccCCcccceeeeEEE-E-CCeEEEEEeecCEEEEEECCCCCeEEccCCC
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVW-KTLSCLPFAISKHGLVV-S-GRNTIYCLDIVDIVYVAASMHKILHSLGSLK 186 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w-~~~~~~~~~~~~~~~~~-~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~ 186 (400)
+++++.- ....++.+.|..+.+- .+++. ....|.... . ++..+|+......+-.+|+.+++ .+...+
T Consensus 6 ~l~~V~~-----~~~~~v~viD~~t~~~~~~i~~---~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~--~v~~i~ 75 (369)
T PF02239_consen 6 NLFYVVE-----RGSGSVAVIDGATNKVVARIPT---GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK--VVATIK 75 (369)
T ss_dssp GEEEEEE-----GGGTEEEEEETTT-SEEEEEE----STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS--EEEEEE
T ss_pred cEEEEEe-----cCCCEEEEEECCCCeEEEEEcC---CCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc--EEEEEe
Confidence 5666653 2335788888887663 23332 222244333 2 34448888666789999999887 333344
Q ss_pred CcceeeeEEEE-CC-EEEEEcccCCCCCCCeEEEEeCCCCceEE-cc--CCC----CcccccEEEEeCCEEEEEcCcccc
Q psy2979 187 FDFDVSGIAML-DG-FVYAVGGWDGSCRLDSVERYDPTKNEWSY-IE--PMK----LAVTSPAVVAHEGMLYVTGGAILE 257 (400)
Q Consensus 187 ~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~--~l~----~~~~~~~~~~~~~~iyv~GG~~~~ 257 (400)
......+++.. ++ .+|+ +.+. .+++..+|..+.+=.. ++ .++ .+|...-.+...+.-|++.-.
T Consensus 76 ~G~~~~~i~~s~DG~~~~v-~n~~----~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk--- 147 (369)
T PF02239_consen 76 VGGNPRGIAVSPDGKYVYV-ANYE----PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK--- 147 (369)
T ss_dssp -SSEEEEEEE--TTTEEEE-EEEE----TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET---
T ss_pred cCCCcceEEEcCCCCEEEE-EecC----CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc---
Confidence 44444444433 44 4544 3322 2468888987754222 22 122 223222223345555665433
Q ss_pred CCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEc---cCCcCcc
Q psy2979 258 DGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYK---SPMKEKR 333 (400)
Q Consensus 258 ~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~---~~~~~~~ 333 (400)
+ ...++..|.....=.....+...+..|....- +++.|+.+-. . .+.+...|.++++-..+ +.-|.+.
T Consensus 148 d---~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~-~----sn~i~viD~~~~k~v~~i~~g~~p~~~ 219 (369)
T PF02239_consen 148 D---TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAAN-G----SNKIAVIDTKTGKLVALIDTGKKPHPG 219 (369)
T ss_dssp T---TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEG-G----GTEEEEEETTTTEEEEEEE-SSSBEET
T ss_pred c---CCeEEEEEeccccccceeeecccccccccccCcccceeeeccc-c----cceeEEEeeccceEEEEeecccccccc
Confidence 2 34788888765432222233344555555444 4454444422 2 56899999988864432 1222222
Q ss_pred CcceEEEE-CCEEEEEcCccCCCCCCCeEEEEECC----CCcEEEecCCCCCCCceeeEEEccccccccc
Q psy2979 334 YRPGIAVI-DGKIYVLGGEEGWDGYHDSIECYDVD----NDSWEIMSHLPSARSWLGCVPLQIHKSQFVD 398 (400)
Q Consensus 334 ~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~----~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~ 398 (400)
....+... .|-++..+|. ... .-...--|+. ...|+.+..++..-..+.+.+..+..++++|
T Consensus 220 ~~~~~php~~g~vw~~~~~-~~~--~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd 286 (369)
T PF02239_consen 220 PGANFPHPGFGPVWATSGL-GYF--AIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVD 286 (369)
T ss_dssp TEEEEEETTTEEEEEEEBS-SSS--EEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE
T ss_pred ccccccCCCcceEEeeccc-cce--ecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEee
Confidence 22222222 2445555554 111 1122233443 3679998887776666777778888888776
|
... |
| >KOG3545|consensus | Back alignment and domain information |
|---|
Probab=94.17 E-value=3.3 Score=35.52 Aligned_cols=183 Identities=17% Similarity=0.173 Sum_probs=107.5
Q ss_pred EEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeC----CCCceEEccCCCCcccccEEEE
Q psy2979 168 IVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDP----TKNEWSYIEPMKLAVTSPAVVA 243 (400)
Q Consensus 168 ~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~----~~~~W~~~~~l~~~~~~~~~~~ 243 (400)
.+....+..+.|.+-+..+ ++++|+..+..+ ..+.-|.. ..+.|...=.+|.+-.+.+-++
T Consensus 11 ~~~~~~~~~GsWmrDpl~~-----------~~r~~~~~~~~~----~~l~E~~~~~~~~~~~~~~~~~lp~~~~gTg~VV 75 (249)
T KOG3545|consen 11 TVKTAGPRFGAWMRDPLPA-----------DDRIYVMNYFDG----LMLTEYTNLEDFKRGRKAEKYRLPYSWDGTGHVV 75 (249)
T ss_pred EEEeeccccceeecCCCcc-----------cCceEEeccccC----ceEEEeccHHHhhccCcceEEeCCCCccccceEE
Confidence 3445566668887654322 577888844332 23444433 3445666667888888888899
Q ss_pred eCCEEEEEcCccccCCCCcceEEEEeCCCCc---eeeccCCCC---------CceeeeEEEECCeEEEEcCcCCCCCCCC
Q psy2979 244 HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ---WQDLAPMLI---------PRSGAAICALDSCIYVLGGWHASTENTN 311 (400)
Q Consensus 244 ~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~---W~~~~~~~~---------~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 311 (400)
.+|.+|.-.+. ...+.+||..+.. |..++.+.. +....-.++-++-++++=-..+... .-
T Consensus 76 ynGs~yynk~~-------t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g-~i 147 (249)
T KOG3545|consen 76 YNGSLYYNKAG-------TRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAG-TI 147 (249)
T ss_pred EcceEEeeccC-------CcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCC-cE
Confidence 99999987655 5678999987743 555543211 1122334455556666654443333 33
Q ss_pred eEEEEECCC----CeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeE-EEEECCCCcEEEecCCCCC
Q psy2979 312 RVECYHIAE----NTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSI-ECYDVDNDSWEIMSHLPSA 380 (400)
Q Consensus 312 ~v~~yd~~~----~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v-~~yd~~~~~W~~~~~~~~~ 380 (400)
.+.+.||.+ ++|..-- ..+....+.++-|-+|++-.. . .....| +.||..+++=+. .++|.+
T Consensus 148 v~skLdp~tl~~e~tW~T~~---~k~~~~~aF~iCGvLY~v~S~-~--~~~~~i~yaydt~~~~~~~-~~ipf~ 214 (249)
T KOG3545|consen 148 VLSKLDPETLEVERTWNTTL---PKRSAGNAFMICGVLYVVHSY-N--CTHTQISYAYDTTTGTQER-IDLPFP 214 (249)
T ss_pred EeeccCHHHhheeeeecccc---CCCCcCceEEEeeeeEEEecc-c--cCCceEEEEEEcCCCceec-cccccc
Confidence 347788843 3463211 123444567778899998655 2 222334 789999887644 344543
|
|
| >PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.0038 Score=46.27 Aligned_cols=63 Identities=33% Similarity=0.547 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHhcCceeceE-------EEECCeEEehhhHHHhhcCcccc------------ccceeecCCCCHHHHHHH
Q psy2979 2 KMVLTGFNEARKNNEFCDVT-------LCVDGSKFPAHRVVLAASSPYFK------------VLETIRLPQLSPYFLHDC 62 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~-------l~~~~~~~~~hr~vLaa~s~yf~------------~m~~vrl~~l~~~~l~~~ 62 (400)
++|..+|.++.+++.|..+. |..++..+..+..|+.++..|.+ .|++|||+.|++++|.+.
T Consensus 22 ~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~~~r~~~~~~Ll~~iR~~~l~~~~L~~~ 101 (103)
T PF07707_consen 22 RFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNPENREEHLKELLSCIRFPLLSPEELQNV 101 (103)
T ss_dssp HHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTHHHHTTTHHHHHCCCHHHCT-HHHHHHC
T ss_pred HHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCCcccCCHHHHHHH
Confidence 46888999999999998875 45566667778888888777763 578999999999999886
Q ss_pred hh
Q psy2979 63 VE 64 (400)
Q Consensus 63 i~ 64 (400)
++
T Consensus 102 v~ 103 (103)
T PF07707_consen 102 VE 103 (103)
T ss_dssp CT
T ss_pred HC
Confidence 53
|
BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A. |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=93.56 E-value=7.1 Score=37.27 Aligned_cols=188 Identities=13% Similarity=0.038 Sum_probs=92.0
Q ss_pred CEEEEEECCCCCeEEccCCCCcceeeeEEEECC-EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeC
Q psy2979 167 DIVYVAASMHKILHSLGSLKFDFDVSGIAMLDG-FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHE 245 (400)
Q Consensus 167 ~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~ 245 (400)
..++..|........+..-..+-.... ..-++ .|+... .. .....++.+|+.+++=..+...+.... .....-+
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~-wSPDG~~la~~s-~~--~~~~~I~~~dl~~g~~~~l~~~~g~~~-~~~~SPD 250 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPA-WSPDGTKLAYVS-FE--SKKPVVYVHDLATGRRRVVANFKGSNS-APAWSPD 250 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccce-EcCCCCEEEEEE-cc--CCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCC
Confidence 468888875544343322111111111 11244 444332 21 123568999998887666554442221 1222224
Q ss_pred C-EEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECCe-EEEEcCcCCCCCCCCeEEEEECCCCeE
Q psy2979 246 G-MLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSC-IYVLGGWHASTENTNRVECYHIAENTW 323 (400)
Q Consensus 246 ~-~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W 323 (400)
+ +|++.... ++ ...++.+|..+...+.+..-... .......-+|+ |+..+.. . . ...++.++..++..
T Consensus 251 G~~la~~~~~---~g--~~~Iy~~d~~~~~~~~lt~~~~~-~~~~~wSpDG~~l~f~s~~-~--g-~~~Iy~~~~~~g~~ 320 (427)
T PRK02889 251 GRTLAVALSR---DG--NSQIYTVNADGSGLRRLTQSSGI-DTEPFFSPDGRSIYFTSDR-G--G-APQIYRMPASGGAA 320 (427)
T ss_pred CCEEEEEEcc---CC--CceEEEEECCCCCcEECCCCCCC-CcCeEEcCCCCEEEEEecC-C--C-CcEEEEEECCCCce
Confidence 4 55554333 33 35789999887776666432211 11122233554 4443321 1 1 34788888887777
Q ss_pred EEccCCcCccCcce-EEEECC-EEEEEcCccCCCCCCCeEEEEECCCCcEEEec
Q psy2979 324 EYKSPMKEKRYRPG-IAVIDG-KIYVLGGEEGWDGYHDSIECYDVDNDSWEIMS 375 (400)
Q Consensus 324 ~~~~~~~~~~~~~~-~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 375 (400)
+.+.... ..... ...-+| .|+..... .+ ...++++|..+++.+.+.
T Consensus 321 ~~lt~~g--~~~~~~~~SpDG~~Ia~~s~~-~g---~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 321 QRVTFTG--SYNTSPRISPDGKLLAYISRV-GG---AFKLYVQDLATGQVTALT 368 (427)
T ss_pred EEEecCC--CCcCceEECCCCCEEEEEEcc-CC---cEEEEEEECCCCCeEEcc
Confidence 6654211 11111 122244 45444332 21 247899999888777663
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=93.39 E-value=8.3 Score=37.54 Aligned_cols=153 Identities=15% Similarity=0.187 Sum_probs=73.6
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCCceEE-ccCCCCcccccEEE-EeCCEEEEEcCccccCCCCcceEEEEeCCCCcee
Q psy2979 199 GFVYAVGGWDGSCRLDSVERYDPTKNEWSY-IEPMKLAVTSPAVV-AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQ 276 (400)
Q Consensus 199 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~~l~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~ 276 (400)
+.+++.||.+ ..+..||..+++-.. +...... -.+++ ..++.+++.|+. |+ .+..||+.+.+-.
T Consensus 138 ~~iLaSgs~D-----gtVrIWDl~tg~~~~~l~~h~~~--V~sla~spdG~lLatgs~---Dg----~IrIwD~rsg~~v 203 (493)
T PTZ00421 138 MNVLASAGAD-----MVVNVWDVERGKAVEVIKCHSDQ--ITSLEWNLDGSLLCTTSK---DK----KLNIIDPRDGTIV 203 (493)
T ss_pred CCEEEEEeCC-----CEEEEEECCCCeEEEEEcCCCCc--eEEEEEECCCCEEEEecC---CC----EEEEEECCCCcEE
Confidence 3567777765 458889988764321 1111111 11122 236778888887 54 7889999876521
Q ss_pred -eccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeE--EEccCCcCccCcceEEEE--CCEEEEEcCc
Q psy2979 277 -DLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTW--EYKSPMKEKRYRPGIAVI--DGKIYVLGGE 351 (400)
Q Consensus 277 -~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W--~~~~~~~~~~~~~~~~~~--~~~lyv~GG~ 351 (400)
.+..-...+........++..++..|.+... ...+..||+.+..- ... .... ........+ ++.++++||.
T Consensus 204 ~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~--Dr~VklWDlr~~~~p~~~~-~~d~-~~~~~~~~~d~d~~~L~lggk 279 (493)
T PTZ00421 204 SSVEAHASAKSQRCLWAKRKDLIITLGCSKSQ--QRQIMLWDTRKMASPYSTV-DLDQ-SSALFIPFFDEDTNLLYIGSK 279 (493)
T ss_pred EEEecCCCCcceEEEEcCCCCeEEEEecCCCC--CCeEEEEeCCCCCCceeEe-ccCC-CCceEEEEEcCCCCEEEEEEe
Confidence 1211111111111122233444444443221 35788899865331 111 0110 011112223 4555556653
Q ss_pred cCCCCCCCeEEEEECCCCcEEEe
Q psy2979 352 EGWDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 352 ~~~~~~~~~v~~yd~~~~~W~~~ 374 (400)
+ ...|.+||..++.....
T Consensus 280 -g----Dg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 280 -G----EGNIRCFELMNERLTFC 297 (493)
T ss_pred -C----CCeEEEEEeeCCceEEE
Confidence 1 13578888887765544
|
|
| >PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants | Back alignment and domain information |
|---|
Probab=93.39 E-value=1.4 Score=34.11 Aligned_cols=83 Identities=10% Similarity=0.197 Sum_probs=57.4
Q ss_pred EEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCC---cCccCcceEEEECCEEEEEcCccCCCCCCCeEEEE-EC
Q psy2979 291 CALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPM---KEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECY-DV 366 (400)
Q Consensus 291 ~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~---~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~y-d~ 366 (400)
+.+||-+|-.+-. .... ...+.+||..+.+|+.++.. .........+.++|+|-++.-........-++|+. |.
T Consensus 2 icinGvly~~a~~-~~~~-~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~ 79 (129)
T PF08268_consen 2 ICINGVLYWLAWS-EDSD-NNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDY 79 (129)
T ss_pred EEECcEEEeEEEE-CCCC-CcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecc
Confidence 3568888877655 2222 57899999999999887643 34556677888899999987541111234578887 46
Q ss_pred CCCcEEEec
Q psy2979 367 DNDSWEIMS 375 (400)
Q Consensus 367 ~~~~W~~~~ 375 (400)
.++.|.+..
T Consensus 80 ~k~~Wsk~~ 88 (129)
T PF08268_consen 80 EKQEWSKKH 88 (129)
T ss_pred ccceEEEEE
Confidence 677899774
|
Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain. |
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=92.95 E-value=13 Score=38.69 Aligned_cols=175 Identities=15% Similarity=0.110 Sum_probs=84.3
Q ss_pred eecCEEEEEECCCCCeEEccCCC-CcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccE
Q psy2979 164 DIVDIVYVAASMHKILHSLGSLK-FDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPA 240 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~~-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~ 240 (400)
.....+..+|..+++.. ..+. ....-.+++.. ++.+++.||.+ ..+..||..+++-.. .+... ....
T Consensus 552 ~~Dg~v~lWd~~~~~~~--~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D-----g~v~iWd~~~~~~~~--~~~~~-~~v~ 621 (793)
T PLN00181 552 NFEGVVQVWDVARSQLV--TEMKEHEKRVWSIDYSSADPTLLASGSDD-----GSVKLWSINQGVSIG--TIKTK-ANIC 621 (793)
T ss_pred eCCCeEEEEECCCCeEE--EEecCCCCCEEEEEEcCCCCCEEEEEcCC-----CEEEEEECCCCcEEE--EEecC-CCeE
Confidence 44566777887665422 1111 11112223332 45677778765 358888887653211 11111 1111
Q ss_pred EEE---eCCEEEEEcCccccCCCCcceEEEEeCCCCc--eeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEE
Q psy2979 241 VVA---HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ--WQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVEC 315 (400)
Q Consensus 241 ~~~---~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 315 (400)
.+. -++..+++|+. ++ .+..||..+.. ...+..-..+ -..+...++..++.|+. ...+..
T Consensus 622 ~v~~~~~~g~~latgs~---dg----~I~iwD~~~~~~~~~~~~~h~~~--V~~v~f~~~~~lvs~s~------D~~iki 686 (793)
T PLN00181 622 CVQFPSESGRSLAFGSA---DH----KVYYYDLRNPKLPLCTMIGHSKT--VSYVRFVDSSTLVSSST------DNTLKL 686 (793)
T ss_pred EEEEeCCCCCEEEEEeC---CC----eEEEEECCCCCccceEecCCCCC--EEEEEEeCCCEEEEEEC------CCEEEE
Confidence 221 25778888887 44 78999986542 1111111111 11222235666666665 346777
Q ss_pred EECCCC----eEEEccCCcCccCcceEE--EECCEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 316 YHIAEN----TWEYKSPMKEKRYRPGIA--VIDGKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 316 yd~~~~----~W~~~~~~~~~~~~~~~~--~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
||..+. .|..+..+.........+ ..++.+++.|+. + ..|.+|+....
T Consensus 687 Wd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~-D-----~~v~iw~~~~~ 740 (793)
T PLN00181 687 WDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSE-T-----NEVFVYHKAFP 740 (793)
T ss_pred EeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeC-C-----CEEEEEECCCC
Confidence 887543 232222211111111122 225667777766 2 46777776543
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=92.93 E-value=8.3 Score=36.28 Aligned_cols=196 Identities=9% Similarity=0.066 Sum_probs=97.0
Q ss_pred CceEEccCCccc-ceeeeEEE--ECCeEEEEEeecCEEEEEECCCCCeEEccCC--C-Ccc--eeeeEEEECCEEEEEcc
Q psy2979 135 KVWKTLSCLPFA-ISKHGLVV--SGRNTIYCLDIVDIVYVAASMHKILHSLGSL--K-FDF--DVSGIAMLDGFVYAVGG 206 (400)
Q Consensus 135 ~~w~~~~~~~~~-~~~~~~~~--~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~--~-~~r--~~~~~~~~~~~iyv~GG 206 (400)
..|.+......+ .....+.. .+...-+++.....+..-+---.+|+..... . ..+ ...++...++..|++|-
T Consensus 75 ~~W~q~~~p~~~~~~L~~V~F~~~d~~~GwAVG~~G~IL~T~DGG~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~ 154 (398)
T PLN00033 75 SEWEQVDLPIDPGVVLLDIAFVPDDPTHGFLLGTRQTLLETKDGGKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGK 154 (398)
T ss_pred CccEEeecCCCCCCceEEEEeccCCCCEEEEEcCCCEEEEEcCCCCCceECccCcccccccccceeeeEEECCEEEEEcC
Confidence 368876422222 24445555 2333256664444455444456689885421 1 111 23444445778888754
Q ss_pred cCCCCCCCeEEEEeCCCCceEEccCCC-CcccccEEEEe-CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccC----
Q psy2979 207 WDGSCRLDSVERYDPTKNEWSYIEPMK-LAVTSPAVVAH-EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAP---- 280 (400)
Q Consensus 207 ~~~~~~~~~v~~yd~~~~~W~~~~~l~-~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~---- 280 (400)
.. .+..=+-.-++|+.++..+ .+-.......+ ++.++++|.. ..+++-+-...+|+.+..
T Consensus 155 ~G------~il~T~DgG~tW~~~~~~~~~p~~~~~i~~~~~~~~~ivg~~--------G~v~~S~D~G~tW~~~~~~t~~ 220 (398)
T PLN00033 155 PA------ILLHTSDGGETWERIPLSPKLPGEPVLIKATGPKSAEMVTDE--------GAIYVTSNAGRNWKAAVEETVS 220 (398)
T ss_pred ce------EEEEEcCCCCCceECccccCCCCCceEEEEECCCceEEEecc--------ceEEEECCCCCCceEccccccc
Confidence 21 2333233356899875321 11112233334 4567777754 256666666778998721
Q ss_pred --CCCC------------ceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEE-EECCCCeEEEccCCcCccCcceEEEECCE
Q psy2979 281 --MLIP------------RSGAAICAL-DSCIYVLGGWHASTENTNRVEC-YHIAENTWEYKSPMKEKRYRPGIAVIDGK 344 (400)
Q Consensus 281 --~~~~------------r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~-yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ 344 (400)
+... -...++... ++.++++|-. ..+++ .|.....|+.+......+........++.
T Consensus 221 ~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~-------G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~ 293 (398)
T PLN00033 221 ATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSR-------GNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGG 293 (398)
T ss_pred ccccccccccccccceeccceeeEEEcCCCCEEEEECC-------ccEEEecCCCCcceEEecCCCccceeeeeEcCCCC
Confidence 1100 112222322 5566666642 23443 44444458987644433322222334788
Q ss_pred EEEEcCc
Q psy2979 345 IYVLGGE 351 (400)
Q Consensus 345 lyv~GG~ 351 (400)
++++|..
T Consensus 294 l~l~g~~ 300 (398)
T PLN00033 294 LWLLTRG 300 (398)
T ss_pred EEEEeCC
Confidence 8888754
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=92.80 E-value=9.3 Score=36.50 Aligned_cols=243 Identities=9% Similarity=-0.041 Sum_probs=116.6
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEE-ECCeEEEEE---eecCEEEEEECCCCCeEEccCC
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVV-SGRNTIYCL---DIVDIVYVAASMHKILHSLGSL 185 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~-~~~~~iyv~---~~~~~~~~yd~~~~~w~~~~~~ 185 (400)
..+++....+ .....+++..|.....=..+..-+.. ....+. -++..|..+ .....++.+|..+++-+.+...
T Consensus 165 riayv~~~~~-~~~~~~l~~~d~dg~~~~~lt~~~~~--~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~ 241 (429)
T PRK03629 165 RIAYVVQTNG-GQFPYELRVSDYDGYNQFVVHRSPQP--LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF 241 (429)
T ss_pred eEEEEEeeCC-CCcceeEEEEcCCCCCCEEeecCCCc--eeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC
Confidence 3445543222 23456788877655433333221111 111111 233323322 2235688889888776665544
Q ss_pred CCcceeeeEEEECC-EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCE-EEEEcCccccCCCCcc
Q psy2979 186 KFDFDVSGIAMLDG-FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGM-LYVTGGAILEDGDGIE 263 (400)
Q Consensus 186 ~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~ 263 (400)
+..-... ...-++ +|++.....+ ...++.+|..+++...+..-+...... .-.-+++ |+..... .+ ..
T Consensus 242 ~~~~~~~-~~SPDG~~La~~~~~~g---~~~I~~~d~~tg~~~~lt~~~~~~~~~-~wSPDG~~I~f~s~~---~g--~~ 311 (429)
T PRK03629 242 PRHNGAP-AFSPDGSKLAFALSKTG---SLNLYVMDLASGQIRQVTDGRSNNTEP-TWFPDSQNLAYTSDQ---AG--RP 311 (429)
T ss_pred CCCcCCe-EECCCCCEEEEEEcCCC---CcEEEEEECCCCCEEEccCCCCCcCce-EECCCCCEEEEEeCC---CC--Cc
Confidence 3221111 111244 5655433222 245899999998877765433221111 1122444 5443322 22 34
Q ss_pred eEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECC
Q psy2979 264 QVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDG 343 (400)
Q Consensus 264 ~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~ 343 (400)
.++.+|+.+...+.+...... .......-+|+.+++.+.... ...++.+|+.++.+..+..... -..+ ...-+|
T Consensus 312 ~Iy~~d~~~g~~~~lt~~~~~-~~~~~~SpDG~~Ia~~~~~~g---~~~I~~~dl~~g~~~~Lt~~~~-~~~p-~~SpDG 385 (429)
T PRK03629 312 QVYKVNINGGAPQRITWEGSQ-NQDADVSSDGKFMVMVSSNGG---QQHIAKQDLATGGVQVLTDTFL-DETP-SIAPNG 385 (429)
T ss_pred eEEEEECCCCCeEEeecCCCC-ccCEEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEeCCCCC-CCCc-eECCCC
Confidence 788889887766665322111 111222335544444332221 3478999999999887764221 1112 223466
Q ss_pred EEEEEcCccCCCCCCCeEEEEECCCCcEEEe
Q psy2979 344 KIYVLGGEEGWDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 344 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 374 (400)
+..++.+. .+. ...++..+.....=+.+
T Consensus 386 ~~i~~~s~-~~~--~~~l~~~~~~G~~~~~l 413 (429)
T PRK03629 386 TMVIYSSS-QGM--GSVLNLVSTDGRFKARL 413 (429)
T ss_pred CEEEEEEc-CCC--ceEEEEEECCCCCeEEC
Confidence 66666554 221 23566777655433333
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=92.78 E-value=1.2 Score=42.58 Aligned_cols=105 Identities=15% Similarity=0.239 Sum_probs=63.3
Q ss_pred CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCe
Q psy2979 245 EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENT 322 (400)
Q Consensus 245 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 322 (400)
+-.||+.|.. .+++++|....+|-. |+...-....++.+ -..++.+||. ...|+.+||.+.+
T Consensus 145 scDly~~gsg--------~evYRlNLEqGrfL~--P~~~~~~~lN~v~in~~hgLla~Gt~------~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 145 SCDLYLVGSG--------SEVYRLNLEQGRFLN--PFETDSGELNVVSINEEHGLLACGTE------DGVVEFWDPRDKS 208 (703)
T ss_pred CccEEEeecC--------cceEEEEcccccccc--ccccccccceeeeecCccceEEeccc------CceEEEecchhhh
Confidence 4568877654 489999998888753 33333233333444 3578888886 5689999998775
Q ss_pred EE-------EccCCcCccCcceEE--EECC-EEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 323 WE-------YKSPMKEKRYRPGIA--VIDG-KIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 323 W~-------~~~~~~~~~~~~~~~--~~~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
-- .+.+.|..-..++++ .+.+ -|-+.-|. . ...|++||+.+.+
T Consensus 209 rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGt-s----~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 209 RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGT-S----TGSVLIYDLRASK 261 (703)
T ss_pred hheeeecccccCCCccccccCcceEEEecCCceeEEeec-c----CCcEEEEEcccCC
Confidence 21 122344333333333 3433 56665554 2 3468889887653
|
|
| >KOG2838|consensus | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.14 Score=43.73 Aligned_cols=69 Identities=23% Similarity=0.366 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc------------ceeecCCCCHH---HHHHHhhhc
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL------------ETIRLPQLSPY---FLHDCVEQC 66 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m------------~~vrl~~l~~~---~l~~~i~~~ 66 (400)
+.++.-|.+.++...=.||-|...+-.||+||+.||+..|+|+.+ -.+.+.+++.+ .++.+++++
T Consensus 115 ~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~tg 194 (401)
T KOG2838|consen 115 NSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLITG 194 (401)
T ss_pred hHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHhc
Confidence 345666677777777778889999999999999999999999865 24566666655 455566666
Q ss_pred cccc
Q psy2979 67 AIIK 70 (400)
Q Consensus 67 ~l~~ 70 (400)
+.-+
T Consensus 195 Efgm 198 (401)
T KOG2838|consen 195 EFGM 198 (401)
T ss_pred ccch
Confidence 6533
|
|
| >PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=92.39 E-value=7.4 Score=34.39 Aligned_cols=160 Identities=16% Similarity=0.174 Sum_probs=95.6
Q ss_pred EccCCCC--cccccEEEEeCCEEEEEcCcccc--------CCC------C-cceEEEEeCCCCc----eeeccCCCCCce
Q psy2979 228 YIEPMKL--AVTSPAVVAHEGMLYVTGGAILE--------DGD------G-IEQVQRYNPKVNQ----WQDLAPMLIPRS 286 (400)
Q Consensus 228 ~~~~l~~--~~~~~~~~~~~~~iyv~GG~~~~--------~~~------~-~~~v~~yd~~~~~----W~~~~~~~~~r~ 286 (400)
.+.+.|. .-.+.++..+++.|| +||.... ++. + -+.|..||..+++ |.+- .-.++.
T Consensus 27 lvG~~P~SGGDTYNAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkes--ih~~~~ 103 (339)
T PF09910_consen 27 LVGPPPTSGGDTYNAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKES--IHDKTK 103 (339)
T ss_pred eccCCCCCCCccceeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecc--cCCccc
Confidence 4444442 334456667888888 5775320 111 1 4568889988887 5543 222333
Q ss_pred eeeEE------EECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCe
Q psy2979 287 GAAIC------ALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDS 360 (400)
Q Consensus 287 ~~~~~------~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~ 360 (400)
.++=+ -++++|++.=+.... ..-+|..|..++.=+.+..-|..+ ++...|...+-+ . .-......
T Consensus 104 WaGEVSdIlYdP~~D~LLlAR~DGh~---nLGvy~ldr~~g~~~~L~~~ps~K---G~~~~D~a~F~i--~-~~~~g~~~ 174 (339)
T PF09910_consen 104 WAGEVSDILYDPYEDRLLLARADGHA---NLGVYSLDRRTGKAEKLSSNPSLK---GTLVHDYACFGI--N-NFHKGVSG 174 (339)
T ss_pred cccchhheeeCCCcCEEEEEecCCcc---eeeeEEEcccCCceeeccCCCCcC---ceEeeeeEEEec--c-ccccCCce
Confidence 33322 126788876432211 346889999999888877666542 344445554433 2 33345688
Q ss_pred EEEEECCCCcE--EEecC-------CCCCCCceeeEEEcccccccccC
Q psy2979 361 IECYDVDNDSW--EIMSH-------LPSARSWLGCVPLQIHKSQFVDK 399 (400)
Q Consensus 361 v~~yd~~~~~W--~~~~~-------~~~~r~~~~~~~~~~~~~~~~~~ 399 (400)
|.+||..+++| +..+. -...|..-.++.+.++.+.|+.|
T Consensus 175 i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~rG 222 (339)
T PF09910_consen 175 IHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFVRG 222 (339)
T ss_pred EEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEEEec
Confidence 99999999999 44321 11234556678888999999877
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=91.93 E-value=8.4 Score=34.02 Aligned_cols=163 Identities=15% Similarity=0.144 Sum_probs=83.4
Q ss_pred EEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCccccc
Q psy2979 160 IYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSP 239 (400)
Q Consensus 160 iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~ 239 (400)
|.+......+..||...+.-.. .....-.-..++..+..-.+.||.++ .+-+||..++.=..+..-..+...-
T Consensus 28 LLvssWDgslrlYdv~~~~l~~--~~~~~~plL~c~F~d~~~~~~G~~dg-----~vr~~Dln~~~~~~igth~~~i~ci 100 (323)
T KOG1036|consen 28 LLVSSWDGSLRLYDVPANSLKL--KFKHGAPLLDCAFADESTIVTGGLDG-----QVRRYDLNTGNEDQIGTHDEGIRCI 100 (323)
T ss_pred EEEEeccCcEEEEeccchhhhh--heecCCceeeeeccCCceEEEeccCc-----eEEEEEecCCcceeeccCCCceEEE
Confidence 5554555667778776652111 11111111112223444455677664 5889999988655554322222111
Q ss_pred EEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECC
Q psy2979 240 AVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIA 319 (400)
Q Consensus 240 ~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~ 319 (400)
.-. ......|.||. |. .+..+|+.... .+.....+..-+++-+ .+.+.++|+. ...|..||..
T Consensus 101 ~~~-~~~~~vIsgsW---D~----~ik~wD~R~~~--~~~~~d~~kkVy~~~v-~g~~LvVg~~------~r~v~iyDLR 163 (323)
T KOG1036|consen 101 EYS-YEVGCVISGSW---DK----TIKFWDPRNKV--VVGTFDQGKKVYCMDV-SGNRLVVGTS------DRKVLIYDLR 163 (323)
T ss_pred Eee-ccCCeEEEccc---Cc----cEEEEeccccc--cccccccCceEEEEec-cCCEEEEeec------CceEEEEEcc
Confidence 111 22345678888 54 78889987621 1122223333344444 4555566655 5689999987
Q ss_pred CCeEEE-------------ccCCcCccCcceEEEECCEEEE
Q psy2979 320 ENTWEY-------------KSPMKEKRYRPGIAVIDGKIYV 347 (400)
Q Consensus 320 ~~~W~~-------------~~~~~~~~~~~~~~~~~~~lyv 347 (400)
+..--. ++-.| .+.++.+..++|++++
T Consensus 164 n~~~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVav 203 (323)
T KOG1036|consen 164 NLDEPFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAV 203 (323)
T ss_pred cccchhhhccccceeEEEEEEEec-CCCceEEEeecceEEE
Confidence 654211 11122 4455556666666665
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=91.82 E-value=12 Score=35.66 Aligned_cols=223 Identities=10% Similarity=0.031 Sum_probs=105.4
Q ss_pred cceEEEEEcCCCceEEccCCcccceeeeEEE-ECCeEEEEE---eecCEEEEEECCCCCeEEccCCCCcceeeeEEEECC
Q psy2979 124 LRSVEGFCVKTKVWKTLSCLPFAISKHGLVV-SGRNTIYCL---DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDG 199 (400)
Q Consensus 124 ~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~-~~~~~iyv~---~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~ 199 (400)
...++..|.......++..-+.... +.+. -++..|+.. .....++.+|..+++-..+...+.... .....-++
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~~~v~--~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG 251 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSPEPII--SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNS-APAWSPDG 251 (427)
T ss_pred ccEEEEECCCCCCceEeccCCCCcc--cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCC
Confidence 3567777765444444432221111 1122 234324433 223568999998876555543331111 11111244
Q ss_pred -EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCC-EEEEEcCccccCCCCcceEEEEeCCCCceee
Q psy2979 200 -FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEG-MLYVTGGAILEDGDGIEQVQRYNPKVNQWQD 277 (400)
Q Consensus 200 -~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~ 277 (400)
+|++....++ ...++.+|..++....+..-....... .-.-+| .|+..+.. .+ ...++.+|..+...+.
T Consensus 252 ~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~~~~~~~-~wSpDG~~l~f~s~~---~g--~~~Iy~~~~~~g~~~~ 322 (427)
T PRK02889 252 RTLAVALSRDG---NSQIYTVNADGSGLRRLTQSSGIDTEP-FFSPDGRSIYFTSDR---GG--APQIYRMPASGGAAQR 322 (427)
T ss_pred CEEEEEEccCC---CceEEEEECCCCCcEECCCCCCCCcCe-EEcCCCCEEEEEecC---CC--CcEEEEEECCCCceEE
Confidence 5554433332 356888898877766654322111111 222344 45544322 22 3478888887777666
Q ss_pred ccCCCCCceeeeEEEECCe-EEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCC
Q psy2979 278 LAPMLIPRSGAAICALDSC-IYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDG 356 (400)
Q Consensus 278 ~~~~~~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~ 356 (400)
+..-. .........-+|+ |+..... +. ...++.+|..+++...+..-.. ...-...-+|+..++... .+.
T Consensus 323 lt~~g-~~~~~~~~SpDG~~Ia~~s~~-~g---~~~I~v~d~~~g~~~~lt~~~~--~~~p~~spdg~~l~~~~~-~~g- 393 (427)
T PRK02889 323 VTFTG-SYNTSPRISPDGKLLAYISRV-GG---AFKLYVQDLATGQVTALTDTTR--DESPSFAPNGRYILYATQ-QGG- 393 (427)
T ss_pred EecCC-CCcCceEECCCCCEEEEEEcc-CC---cEEEEEEECCCCCeEEccCCCC--ccCceECCCCCEEEEEEe-cCC-
Confidence 54211 1111122223454 4433322 11 2479999998888776653211 111122235665555443 221
Q ss_pred CCCeEEEEECCC
Q psy2979 357 YHDSIECYDVDN 368 (400)
Q Consensus 357 ~~~~v~~yd~~~ 368 (400)
...++.+|...
T Consensus 394 -~~~l~~~~~~g 404 (427)
T PRK02889 394 -RSVLAAVSSDG 404 (427)
T ss_pred -CEEEEEEECCC
Confidence 34677888744
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=91.70 E-value=12 Score=35.27 Aligned_cols=195 Identities=11% Similarity=0.061 Sum_probs=97.1
Q ss_pred eeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCCC-CcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceE
Q psy2979 150 HGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLK-FDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWS 227 (400)
Q Consensus 150 ~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~-~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 227 (400)
.++...++. .|++.....++.=.-.-.+|+.++..+ .+-.......+ ++..+++|.. ..+++=+-.-.+|+
T Consensus 140 ~~v~f~~~~-g~~vG~~G~il~T~DgG~tW~~~~~~~~~p~~~~~i~~~~~~~~~ivg~~------G~v~~S~D~G~tW~ 212 (398)
T PLN00033 140 NSISFKGKE-GWIIGKPAILLHTSDGGETWERIPLSPKLPGEPVLIKATGPKSAEMVTDE------GAIYVTSNAGRNWK 212 (398)
T ss_pred eeeEEECCE-EEEEcCceEEEEEcCCCCCceECccccCCCCCceEEEEECCCceEEEecc------ceEEEECCCCCCce
Confidence 445555666 887744444444444567899876432 12122223333 4567777632 23555455566898
Q ss_pred EccC------CCCcc------------cccEEEE-eCCEEEEEcCccccCCCCcceEEE-EeCCCCceeeccCCCCCcee
Q psy2979 228 YIEP------MKLAV------------TSPAVVA-HEGMLYVTGGAILEDGDGIEQVQR-YNPKVNQWQDLAPMLIPRSG 287 (400)
Q Consensus 228 ~~~~------l~~~~------------~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~-yd~~~~~W~~~~~~~~~r~~ 287 (400)
.... +.... ....+.. -++.++++|-. ..+++ .|.....|+.+.. +.++..
T Consensus 213 ~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~--------G~~~~s~d~G~~~W~~~~~-~~~~~l 283 (398)
T PLN00033 213 AAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSR--------GNFYLTWEPGQPYWQPHNR-ASARRI 283 (398)
T ss_pred EcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECC--------ccEEEecCCCCcceEEecC-CCccce
Confidence 8621 11110 0011121 24455555543 13443 4444445898853 333333
Q ss_pred eeE-EEECCeEEEEcCcCCCCCCCCeEEEEECCCCeE-----EEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCC
Q psy2979 288 AAI-CALDSCIYVLGGWHASTENTNRVECYHIAENTW-----EYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHD 359 (400)
Q Consensus 288 ~~~-~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W-----~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~ 359 (400)
.++ ...++.++++|.. ..+..-+-....| ..++. +..+.....+.. ++.++++|.. .
T Consensus 284 ~~v~~~~dg~l~l~g~~-------G~l~~S~d~G~~~~~~~f~~~~~-~~~~~~l~~v~~~~d~~~~a~G~~-------G 348 (398)
T PLN00033 284 QNMGWRADGGLWLLTRG-------GGLYVSKGTGLTEEDFDFEEADI-KSRGFGILDVGYRSKKEAWAAGGS-------G 348 (398)
T ss_pred eeeeEcCCCCEEEEeCC-------ceEEEecCCCCcccccceeeccc-CCCCcceEEEEEcCCCcEEEEECC-------C
Confidence 333 3347888888742 2343333333434 44332 112222222222 6788888865 2
Q ss_pred eEEEEECCCCcEEEec
Q psy2979 360 SIECYDVDNDSWEIMS 375 (400)
Q Consensus 360 ~v~~yd~~~~~W~~~~ 375 (400)
-++.-....++|+..+
T Consensus 349 ~v~~s~D~G~tW~~~~ 364 (398)
T PLN00033 349 ILLRSTDGGKSWKRDK 364 (398)
T ss_pred cEEEeCCCCcceeEcc
Confidence 3555556677899975
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.67 E-value=6.8 Score=32.78 Aligned_cols=165 Identities=16% Similarity=0.180 Sum_probs=101.1
Q ss_pred eeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCC-CcccccEEEEeCCEEEEEcCccccCCCCcceEEEE
Q psy2979 190 DVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMK-LAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRY 268 (400)
Q Consensus 190 ~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~-~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~y 268 (400)
..+++...++++|..-|.-+. +.+.++|..+++=..-.+++ ....+-+.+..++.+|..-=. ++ ..+.|
T Consensus 47 fTQGL~~~~g~i~esTG~yg~---S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~---eg----vaf~~ 116 (262)
T COG3823 47 FTQGLEYLDGHILESTGLYGF---SKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWK---EG----VAFKY 116 (262)
T ss_pred hhcceeeeCCEEEEecccccc---ceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEec---cc----eeEEE
Confidence 344566678899988776543 57889999977533333444 455666888899999988433 33 45777
Q ss_pred eCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeE---EEccCCcCcc-CcceEEEECCE
Q psy2979 269 NPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTW---EYKSPMKEKR-YRPGIAVIDGK 344 (400)
Q Consensus 269 d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W---~~~~~~~~~~-~~~~~~~~~~~ 344 (400)
|+ ++...+...+.+-.+.+.+.-+..+.+..| ...+..-||++-.= ..+..--.|. ..--.--++|.
T Consensus 117 d~--~t~~~lg~~~y~GeGWgLt~d~~~LimsdG-------satL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~ 187 (262)
T COG3823 117 DA--DTLEELGRFSYEGEGWGLTSDDKNLIMSDG-------SATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGE 187 (262)
T ss_pred Ch--HHhhhhcccccCCcceeeecCCcceEeeCC-------ceEEEecCHHHhhhcceEEEEECCeecccccceeeeccE
Confidence 76 445566666666677788877777777777 45566667764321 1111111111 11112233555
Q ss_pred EEEEcCccCCCCCCCeEEEEECCCC---cEEEecCCCC
Q psy2979 345 IYVLGGEEGWDGYHDSIECYDVDND---SWEIMSHLPS 379 (400)
Q Consensus 345 lyv~GG~~~~~~~~~~v~~yd~~~~---~W~~~~~~~~ 379 (400)
+|.-- -..+.|.+.||.++ .|.++..++.
T Consensus 188 lyANV------w~t~~I~rI~p~sGrV~~widlS~L~~ 219 (262)
T COG3823 188 LYANV------WQTTRIARIDPDSGRVVAWIDLSGLLK 219 (262)
T ss_pred EEEee------eeecceEEEcCCCCcEEEEEEccCCch
Confidence 55422 23567889999998 4988877643
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=91.43 E-value=5.5 Score=34.18 Aligned_cols=119 Identities=19% Similarity=0.242 Sum_probs=66.8
Q ss_pred CeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEc-CccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEE
Q psy2979 214 DSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTG-GAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICA 292 (400)
Q Consensus 214 ~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~G-G~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~ 292 (400)
.+|..+|..+++=.+--.++.+....- ...+|.|..+. |. +|--+|+.+-.--+--.||.....+++-
T Consensus 165 ~tVRLWD~rTgt~v~sL~~~s~VtSlE-vs~dG~ilTia~gs---------sV~Fwdaksf~~lKs~k~P~nV~SASL~- 233 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLEFNSPVTSLE-VSQDGRILTIAYGS---------SVKFWDAKSFGLLKSYKMPCNVESASLH- 233 (334)
T ss_pred CceEEEEeccCcEEEEEecCCCCccee-eccCCCEEEEecCc---------eeEEeccccccceeeccCcccccccccc-
Confidence 568888888886544323333332222 22355555542 32 5667777554433333555443322222
Q ss_pred ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEE-E--CCEEEEEcCc
Q psy2979 293 LDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAV-I--DGKIYVLGGE 351 (400)
Q Consensus 293 ~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~-~--~~~lyv~GG~ 351 (400)
-+..+||.||. ...+++||-.++.=. .....+..++.-++ + +|.+|..|-.
T Consensus 234 P~k~~fVaGge------d~~~~kfDy~TgeEi--~~~nkgh~gpVhcVrFSPdGE~yAsGSE 287 (334)
T KOG0278|consen 234 PKKEFFVAGGE------DFKVYKFDYNTGEEI--GSYNKGHFGPVHCVRFSPDGELYASGSE 287 (334)
T ss_pred CCCceEEecCc------ceEEEEEeccCCcee--eecccCCCCceEEEEECCCCceeeccCC
Confidence 24589999997 567889998887532 22223333333222 2 8999999977
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=91.39 E-value=12 Score=34.76 Aligned_cols=123 Identities=11% Similarity=0.195 Sum_probs=72.8
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE--eCCEEEEEcCccccCCCCcceEEEEeCCCCce
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQW 275 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W 275 (400)
++-||..|-.+ ..+-+||..+.. .++.+|..-.--.... -||...+.+-. ++ +|.+||.....
T Consensus 358 DgLifgtgt~d-----~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~ad---d~----~V~lwDLRKl~- 422 (506)
T KOG0289|consen 358 DGLIFGTGTPD-----GVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAAD---DG----SVKLWDLRKLK- 422 (506)
T ss_pred CceEEeccCCC-----ceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEec---CC----eEEEEEehhhc-
Confidence 66676665443 347789998876 6666665222222222 36666666554 33 58999987665
Q ss_pred eeccCCCCCc-eeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEEC
Q psy2979 276 QDLAPMLIPR-SGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVID 342 (400)
Q Consensus 276 ~~~~~~~~~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~ 342 (400)
..+..+.+- .......+ .|...+++|. .-.|+.|+-.+.+|+.+..++..-.-...+-++
T Consensus 423 -n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~------~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg 485 (506)
T KOG0289|consen 423 -NFKTIQLDEKKEVNSLSFDQSGTYLGIAGS------DLQVYICKKKTKSWTEIKELADHSGLSTGVRFG 485 (506)
T ss_pred -ccceeeccccccceeEEEcCCCCeEEeecc------eeEEEEEecccccceeeehhhhcccccceeeec
Confidence 222222221 12223333 4567777765 567888999999999998776544334445553
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=91.34 E-value=8.4 Score=32.82 Aligned_cols=106 Identities=16% Similarity=0.244 Sum_probs=69.9
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeC--CEEEEEcCccccCCCCcceEEEEeCCCCce
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHE--GMLYVTGGAILEDGDGIEQVQRYNPKVNQW 275 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~--~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W 275 (400)
++.=+..||-+ ..+..||..|++=. ..+......-.++.+| ..+.+.|+. | .++..||-.++..
T Consensus 70 Dnskf~s~GgD-----k~v~vwDV~TGkv~--Rr~rgH~aqVNtV~fNeesSVv~Sgsf---D----~s~r~wDCRS~s~ 135 (307)
T KOG0316|consen 70 DNSKFASCGGD-----KAVQVWDVNTGKVD--RRFRGHLAQVNTVRFNEESSVVASGSF---D----SSVRLWDCRSRSF 135 (307)
T ss_pred cccccccCCCC-----ceEEEEEcccCeee--eecccccceeeEEEecCcceEEEeccc---c----ceeEEEEcccCCC
Confidence 44444444433 56888999888521 1111111111223333 356677777 4 4799999999999
Q ss_pred eeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeE
Q psy2979 276 QDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTW 323 (400)
Q Consensus 276 ~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 323 (400)
+.+.-+...+-+...+.+.+..++.|-. ...+-.||...++-
T Consensus 136 ePiQildea~D~V~Si~v~~heIvaGS~------DGtvRtydiR~G~l 177 (307)
T KOG0316|consen 136 EPIQILDEAKDGVSSIDVAEHEIVAGSV------DGTVRTYDIRKGTL 177 (307)
T ss_pred CccchhhhhcCceeEEEecccEEEeecc------CCcEEEEEeeccee
Confidence 9888888888888888888888887765 45788899877763
|
|
| >smart00875 BACK BTB And C-terminal Kelch | Back alignment and domain information |
|---|
Probab=91.29 E-value=0.08 Score=38.78 Aligned_cols=60 Identities=28% Similarity=0.575 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHhcCceeceE-------EEECCeEEehhhHHHhhcCccc-----------cccceeecCCCCHHHHHH
Q psy2979 2 KMVLTGFNEARKNNEFCDVT-------LCVDGSKFPAHRVVLAASSPYF-----------KVLETIRLPQLSPYFLHD 61 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~-------l~~~~~~~~~hr~vLaa~s~yf-----------~~m~~vrl~~l~~~~l~~ 61 (400)
++|..+|.++.+++.|..+. |..|+..+..+..|+.++..|. +.|++|||+.++++.|.+
T Consensus 22 ~~i~~nf~~~~~~~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~~~~~~~~~~ll~~ir~~~~~~~~l~~ 99 (101)
T smart00875 22 RFILKNFLEVAQSEEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHDPERRRHLPELLSHVRFPLLSPEYLLE 99 (101)
T ss_pred HHHHHHHHHHhcCcHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHhCCCCCCCHHHHHh
Confidence 46788899999999998874 5666666667888888877654 368999999999997765
|
The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=91.28 E-value=14 Score=35.21 Aligned_cols=148 Identities=9% Similarity=0.034 Sum_probs=85.9
Q ss_pred CeEEEEeCCCCceEEccCCCCcccccEEEEeCC-EEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEE
Q psy2979 214 DSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEG-MLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICA 292 (400)
Q Consensus 214 ~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~ 292 (400)
..++.+|+.+++=+.+...+....... ..-++ +|.+.-.. ++ ...++.+|..+..++++.+.+..-. .....
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~~~~~~-~SPDG~~la~~~~~---~g--~~~Iy~~dl~~g~~~~LT~~~~~d~-~p~~S 285 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGMLVVSD-VSKDGSKLLLTMAP---KG--QPDIYLYDTNTKTLTQITNYPGIDV-NGNFV 285 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCcEEeeE-ECCCCCEEEEEEcc---CC--CcEEEEEECCCCcEEEcccCCCccC-ccEEC
Confidence 479999999887666655332211112 22344 56554333 22 3589999999999988865443111 11222
Q ss_pred ECC-eEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCE-EEEEcCccCCCC---CCCeEEEEECC
Q psy2979 293 LDS-CIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGK-IYVLGGEEGWDG---YHDSIECYDVD 367 (400)
Q Consensus 293 ~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-lyv~GG~~~~~~---~~~~v~~yd~~ 367 (400)
-+| +|+......+ ...++.+|..+++.+.+.... .... ...-+|+ |...... .... ...+++.+|++
T Consensus 286 PDG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~g--~~~~-~~SPDG~~Ia~~~~~-~~~~~~~~~~~I~v~d~~ 357 (419)
T PRK04043 286 EDDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFHG--KNNS-SVSTYKNYIVYSSRE-TNNEFGKNTFNLYLISTN 357 (419)
T ss_pred CCCCEEEEEECCCC----CceEEEEECCCCCeEeCccCC--CcCc-eECCCCCEEEEEEcC-CCcccCCCCcEEEEEECC
Confidence 244 6776654321 458999999998887665321 1222 2222444 4444332 2111 23689999999
Q ss_pred CCcEEEecC
Q psy2979 368 NDSWEIMSH 376 (400)
Q Consensus 368 ~~~W~~~~~ 376 (400)
++.++.+..
T Consensus 358 ~g~~~~LT~ 366 (419)
T PRK04043 358 SDYIRRLTA 366 (419)
T ss_pred CCCeEECCC
Confidence 999988754
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=90.98 E-value=17 Score=37.92 Aligned_cols=140 Identities=11% Similarity=0.126 Sum_probs=70.1
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcc-cccEEEE--eCCEEEEEcCccccCCCCcceEEEEeCCCCce
Q psy2979 199 GFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAV-TSPAVVA--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQW 275 (400)
Q Consensus 199 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~-~~~~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W 275 (400)
+...+.|+.+ ..+..||..+++.. ..+.... .-.+++. .++.+++.||. ++ .+..||..+..-
T Consensus 545 ~~~las~~~D-----g~v~lWd~~~~~~~--~~~~~H~~~V~~l~~~p~~~~~L~Sgs~---Dg----~v~iWd~~~~~~ 610 (793)
T PLN00181 545 KSQVASSNFE-----GVVQVWDVARSQLV--TEMKEHEKRVWSIDYSSADPTLLASGSD---DG----SVKLWSINQGVS 610 (793)
T ss_pred CCEEEEEeCC-----CeEEEEECCCCeEE--EEecCCCCCEEEEEEcCCCCCEEEEEcC---CC----EEEEEECCCCcE
Confidence 4455556654 35888898776432 2222111 1112222 25678888887 54 688888865432
Q ss_pred eeccCCCCCceeeeEEE--ECCeEEEEcCcCCCCCCCCeEEEEECCCCe--EEEccCCcCccCcceEEEECCEEEEEcCc
Q psy2979 276 QDLAPMLIPRSGAAICA--LDSCIYVLGGWHASTENTNRVECYHIAENT--WEYKSPMKEKRYRPGIAVIDGKIYVLGGE 351 (400)
Q Consensus 276 ~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~lyv~GG~ 351 (400)
. ..+.......++.. .++..++.|+. ...+..||..+.. ...+...... ...+...++..++.|+.
T Consensus 611 ~--~~~~~~~~v~~v~~~~~~g~~latgs~------dg~I~iwD~~~~~~~~~~~~~h~~~--V~~v~f~~~~~lvs~s~ 680 (793)
T PLN00181 611 I--GTIKTKANICCVQFPSESGRSLAFGSA------DHKVYYYDLRNPKLPLCTMIGHSKT--VSYVRFVDSSTLVSSST 680 (793)
T ss_pred E--EEEecCCCeEEEEEeCCCCCEEEEEeC------CCeEEEEECCCCCccceEecCCCCC--EEEEEEeCCCEEEEEEC
Confidence 1 11111111111111 24677788776 4679999987543 2222111111 11122235666666665
Q ss_pred cCCCCCCCeEEEEECCC
Q psy2979 352 EGWDGYHDSIECYDVDN 368 (400)
Q Consensus 352 ~~~~~~~~~v~~yd~~~ 368 (400)
+ ..|-+||+..
T Consensus 681 -D-----~~ikiWd~~~ 691 (793)
T PLN00181 681 -D-----NTLKLWDLSM 691 (793)
T ss_pred -C-----CEEEEEeCCC
Confidence 2 3567777754
|
|
| >PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants | Back alignment and domain information |
|---|
Probab=90.94 E-value=3.3 Score=31.95 Aligned_cols=82 Identities=6% Similarity=0.147 Sum_probs=56.5
Q ss_pred EeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccC---CCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEE-EC
Q psy2979 243 AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAP---MLIPRSGAAICALDSCIYVLGGWHASTENTNRVECY-HI 318 (400)
Q Consensus 243 ~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~---~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~y-d~ 318 (400)
.+||.+|-.+-. .......+.+||..+++|+.++. .........++.++|+|-++.-........-.+|.. |.
T Consensus 3 cinGvly~~a~~---~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~ 79 (129)
T PF08268_consen 3 CINGVLYWLAWS---EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDY 79 (129)
T ss_pred EECcEEEeEEEE---CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecc
Confidence 467888876554 11115689999999999998853 235566778889999998887544332113567777 56
Q ss_pred CCCeEEEcc
Q psy2979 319 AENTWEYKS 327 (400)
Q Consensus 319 ~~~~W~~~~ 327 (400)
.++.|++..
T Consensus 80 ~k~~Wsk~~ 88 (129)
T PF08268_consen 80 EKQEWSKKH 88 (129)
T ss_pred ccceEEEEE
Confidence 678898763
|
Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain. |
| >PLN03215 ascorbic acid mannose pathway regulator 1; Provisional | Back alignment and domain information |
|---|
Probab=90.70 E-value=13 Score=34.41 Aligned_cols=97 Identities=10% Similarity=0.147 Sum_probs=57.4
Q ss_pred CCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCC-----CC--ceeeeEEEECC
Q psy2979 223 KNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPML-----IP--RSGAAICALDS 295 (400)
Q Consensus 223 ~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-----~~--r~~~~~~~~~~ 295 (400)
.+.|+.+.. .....--++.++|++|++.-. ..++.++..- .-+++++.. .. ......+...|
T Consensus 189 ~~~Wt~l~~--~~~~~~DIi~~kGkfYAvD~~--------G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs~G 257 (373)
T PLN03215 189 GNVLKALKQ--MGYHFSDIIVHKGQTYALDSI--------GIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVECCG 257 (373)
T ss_pred CCeeeEccC--CCceeeEEEEECCEEEEEcCC--------CeEEEEecCC-ceeeecceecccccCCcccCceeEEEECC
Confidence 489999964 223345678899999999432 2466666421 122222211 01 12234667788
Q ss_pred eEEEEcCcCCCC------------C-CCCeEEEEECCCCeEEEccCCc
Q psy2979 296 CIYVLGGWHAST------------E-NTNRVECYHIAENTWEYKSPMK 330 (400)
Q Consensus 296 ~iyv~GG~~~~~------------~-~~~~v~~yd~~~~~W~~~~~~~ 330 (400)
+++++....... . ..-.|++.|.+..+|.++..+.
T Consensus 258 dLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 258 ELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred EEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 899998742110 0 0125666688899999988765
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=90.51 E-value=16 Score=34.54 Aligned_cols=139 Identities=16% Similarity=0.085 Sum_probs=78.2
Q ss_pred ceEEEEEcCCCceEEcc-CCccccee------------eeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCCCCccee
Q psy2979 125 RSVEGFCVKTKVWKTLS-CLPFAISK------------HGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDV 191 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~-~~~~~~~~------------~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~ 191 (400)
.+++.|||.+++-..+. .+|..|.. --.+++++. .+++.+....+.+++..+--.+++....-|+.
T Consensus 287 GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd-~ia~VSRGkaFi~~~~~~~~iqv~~~~~VrY~ 365 (668)
T COG4946 287 GDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGD-YIALVSRGKAFIMRPWDGYSIQVGKKGGVRYR 365 (668)
T ss_pred CcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCc-EEEEEecCcEEEECCCCCeeEEcCCCCceEEE
Confidence 36899999999887763 33433211 113455666 66666667778888776655555554444444
Q ss_pred eeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCC
Q psy2979 192 SGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPK 271 (400)
Q Consensus 192 ~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~ 271 (400)
+.. .++.-.++|-.++ +.+.+||..+..-..+.+ +..+-....+.-+|+..+++-. .-++|.+|..
T Consensus 366 r~~--~~~e~~vigt~dg----D~l~iyd~~~~e~kr~e~-~lg~I~av~vs~dGK~~vvaNd-------r~el~vidid 431 (668)
T COG4946 366 RIQ--VDPEGDVIGTNDG----DKLGIYDKDGGEVKRIEK-DLGNIEAVKVSPDGKKVVVAND-------RFELWVIDID 431 (668)
T ss_pred EEc--cCCcceEEeccCC----ceEEEEecCCceEEEeeC-CccceEEEEEcCCCcEEEEEcC-------ceEEEEEEec
Confidence 332 2344566665554 468899988887544432 1111111222335554444433 2367777777
Q ss_pred CCceeec
Q psy2979 272 VNQWQDL 278 (400)
Q Consensus 272 ~~~W~~~ 278 (400)
+..-+.+
T Consensus 432 ngnv~~i 438 (668)
T COG4946 432 NGNVRLI 438 (668)
T ss_pred CCCeeEe
Confidence 7665544
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=90.08 E-value=15 Score=33.80 Aligned_cols=241 Identities=11% Similarity=0.058 Sum_probs=111.9
Q ss_pred cEEEEEecc----CCCcccceEEEEEcCCCceE-EccCCcccc-----eeeeEEEE-CCeEEEEE--eecCEEEEEECCC
Q psy2979 110 NVIIAVGGE----DDKVVLRSVEGFCVKTKVWK-TLSCLPFAI-----SKHGLVVS-GRNTIYCL--DIVDIVYVAASMH 176 (400)
Q Consensus 110 ~~i~~~gg~----~~~~~~~~~~~yd~~~~~w~-~~~~~~~~~-----~~~~~~~~-~~~~iyv~--~~~~~~~~yd~~~ 176 (400)
..+|+.-.. ..+.....+.+||+.+.+-. +++..+.|+ .....++. +++.+|+. ...+.+-..|..+
T Consensus 58 ~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~ 137 (352)
T TIGR02658 58 SFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEG 137 (352)
T ss_pred CEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCC
Confidence 466665542 12345578999999998754 333223333 12233333 55548877 3467889999998
Q ss_pred CCeEEccCCCCccee-------eeEEEECCEE-EEEcccCCCCCCCeEEEEeCCCCceEEccCCC--Ccccc-cEEEEeC
Q psy2979 177 KILHSLGSLKFDFDV-------SGIAMLDGFV-YAVGGWDGSCRLDSVERYDPTKNEWSYIEPMK--LAVTS-PAVVAHE 245 (400)
Q Consensus 177 ~~w~~~~~~~~~r~~-------~~~~~~~~~i-yv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~--~~~~~-~~~~~~~ 245 (400)
++-...-+.|.+..- +.+.+.++.. .+.-+.++.....+...||.... .+-.-| .+..+ ...+...
T Consensus 138 ~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~---~v~~rP~~~~~dg~~~~vs~e 214 (352)
T TIGR02658 138 KAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDE---YLINHPAYSNKSGRLVWPTYT 214 (352)
T ss_pred CcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCcc---ccccCCceEcCCCcEEEEecC
Confidence 876553333322211 1122233322 22222222222333344444321 010111 11111 1123344
Q ss_pred CEEEEEcCccccCCCC-cceEEE--EeCCCCceeeccCCCCCceeeeEEEE--CCeEEEEc--CcCCC-CCCCCeEEEEE
Q psy2979 246 GMLYVTGGAILEDGDG-IEQVQR--YNPKVNQWQDLAPMLIPRSGAAICAL--DSCIYVLG--GWHAS-TENTNRVECYH 317 (400)
Q Consensus 246 ~~iyv~GG~~~~~~~~-~~~v~~--yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~G--G~~~~-~~~~~~v~~yd 317 (400)
|.+|++.=.. ++.. ...+.. +......|..... . .++.. ++++|+.. +..+. ....+.++.+|
T Consensus 215 G~V~~id~~~--~~~~~~~~~~~~~~~~~~~~wrP~g~-----q--~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD 285 (352)
T TIGR02658 215 GKIFQIDLSS--GDAKFLPAIEAFTEAEKADGWRPGGW-----Q--QVAYHRARDRIYLLADQRAKWTHKTASRFLFVVD 285 (352)
T ss_pred CeEEEEecCC--CcceecceeeeccccccccccCCCcc-----e--eEEEcCCCCEEEEEecCCccccccCCCCEEEEEE
Confidence 6666663110 0000 111111 1111222332211 1 12333 67899842 21111 11157899999
Q ss_pred CCCCeEEEccCCcCccCcceEEEE-C-C-EEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 318 IAENTWEYKSPMKEKRYRPGIAVI-D-G-KIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 318 ~~~~~W~~~~~~~~~~~~~~~~~~-~-~-~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
+.+.+ .+...+.++..+++++- + . .+|+.-+. .++|.++|..+.+
T Consensus 286 ~~t~k--vi~~i~vG~~~~~iavS~Dgkp~lyvtn~~------s~~VsViD~~t~k 333 (352)
T TIGR02658 286 AKTGK--RLRKIELGHEIDSINVSQDAKPLLYALSTG------DKTLYIFDAETGK 333 (352)
T ss_pred CCCCe--EEEEEeCCCceeeEEECCCCCeEEEEeCCC------CCcEEEEECcCCe
Confidence 76654 55555555555555544 3 4 57776654 3579999988873
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=89.95 E-value=13 Score=32.86 Aligned_cols=132 Identities=15% Similarity=0.266 Sum_probs=78.6
Q ss_pred EccCCCC--cceeeeEEEECCEEEEEcccCC---------C--------CCCCeEEEEeCCCCceEEcc--CCCCccccc
Q psy2979 181 SLGSLKF--DFDVSGIAMLDGFVYAVGGWDG---------S--------CRLDSVERYDPTKNEWSYIE--PMKLAVTSP 239 (400)
Q Consensus 181 ~~~~~~~--~r~~~~~~~~~~~iyv~GG~~~---------~--------~~~~~v~~yd~~~~~W~~~~--~l~~~~~~~ 239 (400)
.+.+.|. .-.+-++..+++.||+ ||+-- . .--+.+..||..+++=+.+- ++..+....
T Consensus 27 lvG~~P~SGGDTYNAV~~vDd~IyF-GGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~~~Wa 105 (339)
T PF09910_consen 27 LVGPPPTSGGDTYNAVEWVDDFIYF-GGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDKTKWA 105 (339)
T ss_pred eccCCCCCCCccceeeeeecceEEE-eeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCccccc
Confidence 3444443 3456667777888886 77631 0 12356888999888633331 222222222
Q ss_pred EEE------EeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeE
Q psy2979 240 AVV------AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRV 313 (400)
Q Consensus 240 ~~~------~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v 313 (400)
+=+ -+++.+++.=+ ||...-.+|..|.++..-+.+..-|.+ -++..++...|-+ .+-... ...+
T Consensus 106 GEVSdIlYdP~~D~LLlAR~----DGh~nLGvy~ldr~~g~~~~L~~~ps~---KG~~~~D~a~F~i--~~~~~g-~~~i 175 (339)
T PF09910_consen 106 GEVSDILYDPYEDRLLLARA----DGHANLGVYSLDRRTGKAEKLSSNPSL---KGTLVHDYACFGI--NNFHKG-VSGI 175 (339)
T ss_pred cchhheeeCCCcCEEEEEec----CCcceeeeEEEcccCCceeeccCCCCc---CceEeeeeEEEec--cccccC-CceE
Confidence 211 13678887633 443345789999999888888766655 3344445454433 222333 7899
Q ss_pred EEEECCCCeE
Q psy2979 314 ECYHIAENTW 323 (400)
Q Consensus 314 ~~yd~~~~~W 323 (400)
.+||..+++|
T Consensus 176 ~~~Dli~~~~ 185 (339)
T PF09910_consen 176 HCLDLISGKW 185 (339)
T ss_pred EEEEccCCeE
Confidence 9999999999
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=89.73 E-value=18 Score=34.17 Aligned_cols=237 Identities=11% Similarity=0.062 Sum_probs=118.0
Q ss_pred CcccceEEEEEcCCCceEEccCCcccceeeeEEEECC-eEEEEE-----ee------cCEEEEEECCCCCeE--EccCCC
Q psy2979 121 KVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGR-NTIYCL-----DI------VDIVYVAASMHKILH--SLGSLK 186 (400)
Q Consensus 121 ~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~-~~iyv~-----~~------~~~~~~yd~~~~~w~--~~~~~~ 186 (400)
+.....+.++|..+++... ..++..... .++-.++ ..+|.. .. ...++++...+..-. .+=.-+
T Consensus 146 G~e~~~l~v~Dl~tg~~l~-d~i~~~~~~-~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~ 223 (414)
T PF02897_consen 146 GSEWYTLRVFDLETGKFLP-DGIENPKFS-SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEP 223 (414)
T ss_dssp TSSEEEEEEEETTTTEEEE-EEEEEEESE-EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-T
T ss_pred CCceEEEEEEECCCCcCcC-Ccccccccc-eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeec
Confidence 3444577888888875432 111222211 1444444 313333 12 445677766655432 111111
Q ss_pred Ccce-eeeEEEE-CCE-EEEEcccCCCCCCCeEEEEeCCCC-----ceEEccCCCCcccccEEEEeCCEEEEEcCccccC
Q psy2979 187 FDFD-VSGIAML-DGF-VYAVGGWDGSCRLDSVERYDPTKN-----EWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILED 258 (400)
Q Consensus 187 ~~r~-~~~~~~~-~~~-iyv~GG~~~~~~~~~v~~yd~~~~-----~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~ 258 (400)
.... ...+..- +++ |++.-. .+.. .+.++..|.... .|..+.+- ..-..+.+...++.+|+.... +
T Consensus 224 ~~~~~~~~~~~s~d~~~l~i~~~-~~~~-~s~v~~~d~~~~~~~~~~~~~l~~~-~~~~~~~v~~~~~~~yi~Tn~---~ 297 (414)
T PF02897_consen 224 DEPFWFVSVSRSKDGRYLFISSS-SGTS-ESEVYLLDLDDGGSPDAKPKLLSPR-EDGVEYYVDHHGDRLYILTND---D 297 (414)
T ss_dssp TCTTSEEEEEE-TTSSEEEEEEE-SSSS-EEEEEEEECCCTTTSS-SEEEEEES-SSS-EEEEEEETTEEEEEE-T---T
T ss_pred CCCcEEEEEEecCcccEEEEEEE-cccc-CCeEEEEeccccCCCcCCcEEEeCC-CCceEEEEEccCCEEEEeeCC---C
Confidence 1122 2222222 333 333222 2222 367888888875 78877542 222223444558899987553 2
Q ss_pred CCCcceEEEEeCCCCc---ee-eccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECC-CCeEEEccCCcCcc
Q psy2979 259 GDGIEQVQRYNPKVNQ---WQ-DLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIA-ENTWEYKSPMKEKR 333 (400)
Q Consensus 259 ~~~~~~v~~yd~~~~~---W~-~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~-~~~W~~~~~~~~~~ 333 (400)
.. ...+..++..... |. .+.+-......-.+...++.|++.-=.+. ...+..||+. +..-..++ +|..-
T Consensus 298 a~-~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~----~~~l~v~~~~~~~~~~~~~-~p~~g 371 (414)
T PF02897_consen 298 AP-NGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENG----SSRLRVYDLDDGKESREIP-LPEAG 371 (414)
T ss_dssp -T-T-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETT----EEEEEEEETT-TEEEEEEE-SSSSS
T ss_pred CC-CcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECC----ccEEEEEECCCCcEEeeec-CCcce
Confidence 22 3578888877665 66 55444444455666667888887753322 5689999998 33333333 33211
Q ss_pred CcceEEE-E-CCEEEE-EcCccCCCCCCCeEEEEECCCCcEEEec
Q psy2979 334 YRPGIAV-I-DGKIYV-LGGEEGWDGYHDSIECYDVDNDSWEIMS 375 (400)
Q Consensus 334 ~~~~~~~-~-~~~lyv-~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 375 (400)
...+... . .+.+++ +.+. ..-..++.||+.+++.+.+.
T Consensus 372 ~v~~~~~~~~~~~~~~~~ss~----~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 372 SVSGVSGDFDSDELRFSYSSF----TTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp EEEEEES-TT-SEEEEEEEET----TEEEEEEEEETTTTCEEEEE
T ss_pred EEeccCCCCCCCEEEEEEeCC----CCCCEEEEEECCCCCEEEEE
Confidence 1111110 0 344444 3343 23468999999999877653
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=89.48 E-value=25 Score=35.30 Aligned_cols=134 Identities=13% Similarity=0.102 Sum_probs=73.0
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE--eCCEEEEEcCccccCCCCcceEEEEeCCCCce
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQW 275 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W 275 (400)
++.+.+.|+.++ .|-+||..++..... ....-..++++. ..++..+.... || +|-.+|.....=
T Consensus 361 Dgq~iaTG~eDg-----KVKvWn~~SgfC~vT--FteHts~Vt~v~f~~~g~~llssSL---DG----tVRAwDlkRYrN 426 (893)
T KOG0291|consen 361 DGQLIATGAEDG-----KVKVWNTQSGFCFVT--FTEHTSGVTAVQFTARGNVLLSSSL---DG----TVRAWDLKRYRN 426 (893)
T ss_pred CCcEEEeccCCC-----cEEEEeccCceEEEE--eccCCCceEEEEEEecCCEEEEeec---CC----eEEeeeecccce
Confidence 778888888663 577788777643211 122223333332 35566565555 55 578888766543
Q ss_pred eeccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEcc-CCcCccCcceEEEECCEEEEEcCc
Q psy2979 276 QDLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKS-PMKEKRYRPGIAVIDGKIYVLGGE 351 (400)
Q Consensus 276 ~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~~~~~~~~~~~~~lyv~GG~ 351 (400)
.+-=..|.|+...++++- .|.|.+.|+.+ .-.++.++.+|++-..+- ....|....+ ....+.+.+.|-+
T Consensus 427 fRTft~P~p~QfscvavD~sGelV~AG~~d-----~F~IfvWS~qTGqllDiLsGHEgPVs~l~-f~~~~~~LaS~SW 498 (893)
T KOG0291|consen 427 FRTFTSPEPIQFSCVAVDPSGELVCAGAQD-----SFEIFVWSVQTGQLLDILSGHEGPVSGLS-FSPDGSLLASGSW 498 (893)
T ss_pred eeeecCCCceeeeEEEEcCCCCEEEeeccc-----eEEEEEEEeecCeeeehhcCCCCcceeeE-EccccCeEEeccc
Confidence 332234555544444433 48899988764 456777888888754432 2222222111 1224556666665
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=88.99 E-value=24 Score=34.42 Aligned_cols=151 Identities=9% Similarity=0.018 Sum_probs=71.6
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEE-----ccCCCCcccccEEEEe---CCEEEEEcCccccCCCCcceEEEEe
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSY-----IEPMKLAVTSPAVVAH---EGMLYVTGGAILEDGDGIEQVQRYN 269 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-----~~~l~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~~~v~~yd 269 (400)
++.+++.|+.+ .++..||..++.... +..+......-..+.+ ++.+++.||. |+ .+..||
T Consensus 87 d~~~LaSgS~D-----gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~---Dg----tVrIWD 154 (493)
T PTZ00421 87 DPQKLFTASED-----GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA---DM----VVNVWD 154 (493)
T ss_pred CCCEEEEEeCC-----CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC---CC----EEEEEE
Confidence 45566767655 357777776543211 1111111111112222 2467777877 54 688999
Q ss_pred CCCCcee-eccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEE-EccCCcCccCcceEEEECCEEEE
Q psy2979 270 PKVNQWQ-DLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWE-YKSPMKEKRYRPGIAVIDGKIYV 347 (400)
Q Consensus 270 ~~~~~W~-~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~~~lyv 347 (400)
..+.+-. .+...... -.......++.+++.|+. ...+..||+.+++-. .+......+........++..++
T Consensus 155 l~tg~~~~~l~~h~~~-V~sla~spdG~lLatgs~------Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~iv 227 (493)
T PTZ00421 155 VERGKAVEVIKCHSDQ-ITSLEWNLDGSLLCTTSK------DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLII 227 (493)
T ss_pred CCCCeEEEEEcCCCCc-eEEEEEECCCCEEEEecC------CCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEE
Confidence 8766422 11111111 111112236778888876 467899999876522 22111111111111111333444
Q ss_pred EcCccCCCCCCCeEEEEECCCC
Q psy2979 348 LGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 348 ~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
..|. +. .....|..||+.+.
T Consensus 228 t~G~-s~-s~Dr~VklWDlr~~ 247 (493)
T PTZ00421 228 TLGC-SK-SQQRQIMLWDTRKM 247 (493)
T ss_pred EEec-CC-CCCCeEEEEeCCCC
Confidence 4443 21 12357888998653
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=88.65 E-value=15 Score=31.66 Aligned_cols=145 Identities=17% Similarity=0.112 Sum_probs=78.1
Q ss_pred CcEEEEEeccC--CCcccceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCCC
Q psy2979 109 INVIIAVGGED--DKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLK 186 (400)
Q Consensus 109 ~~~i~~~gg~~--~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~ 186 (400)
...+++.+... +......+..+|..+++-.+--.++.+... .-+..++. |..+.....+-..|+.+-.-.+--.||
T Consensus 147 r~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtS-lEvs~dG~-ilTia~gssV~Fwdaksf~~lKs~k~P 224 (334)
T KOG0278|consen 147 RTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTS-LEVSQDGR-ILTIAYGSSVKFWDAKSFGLLKSYKMP 224 (334)
T ss_pred eeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcc-eeeccCCC-EEEEecCceeEEeccccccceeeccCc
Confidence 35555554322 123345677888888765443333433332 12233555 666666666777777654333333344
Q ss_pred CcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEE---EeCCEEEEEcCccccCCCC
Q psy2979 187 FDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVV---AHEGMLYVTGGAILEDGDG 261 (400)
Q Consensus 187 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~---~~~~~iyv~GG~~~~~~~~ 261 (400)
..-. ++.+ +..+||.||.+. .+++||-.|+.= +........+.-.+ .-+|.+|..|.. ||.
T Consensus 225 ~nV~---SASL~P~k~~fVaGged~-----~~~kfDy~TgeE--i~~~nkgh~gpVhcVrFSPdGE~yAsGSE---DGT- 290 (334)
T KOG0278|consen 225 CNVE---SASLHPKKEFFVAGGEDF-----KVYKFDYNTGEE--IGSYNKGHFGPVHCVRFSPDGELYASGSE---DGT- 290 (334)
T ss_pred cccc---cccccCCCceEEecCcce-----EEEEEeccCCce--eeecccCCCCceEEEEECCCCceeeccCC---Cce-
Confidence 3222 2223 558999999663 477888888752 22222333333222 248999999988 763
Q ss_pred cceEEEEeC
Q psy2979 262 IEQVQRYNP 270 (400)
Q Consensus 262 ~~~v~~yd~ 270 (400)
-.+|+-.|
T Consensus 291 -irlWQt~~ 298 (334)
T KOG0278|consen 291 -IRLWQTTP 298 (334)
T ss_pred -EEEEEecC
Confidence 34455444
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=87.44 E-value=20 Score=31.77 Aligned_cols=155 Identities=16% Similarity=0.207 Sum_probs=83.3
Q ss_pred eEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEEC
Q psy2979 215 SVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALD 294 (400)
Q Consensus 215 ~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 294 (400)
++-.||..++.-. -.+.....--.++..+..=.++||. ++ .+-+||..+..=..+..-..+.....-. ..
T Consensus 36 slrlYdv~~~~l~--~~~~~~~plL~c~F~d~~~~~~G~~---dg----~vr~~Dln~~~~~~igth~~~i~ci~~~-~~ 105 (323)
T KOG1036|consen 36 SLRLYDVPANSLK--LKFKHGAPLLDCAFADESTIVTGGL---DG----QVRRYDLNTGNEDQIGTHDEGIRCIEYS-YE 105 (323)
T ss_pred cEEEEeccchhhh--hheecCCceeeeeccCCceEEEecc---Cc----eEEEEEecCCcceeeccCCCceEEEEee-cc
Confidence 4667777766211 1111111112333445545566777 55 7999999988777765433332211111 23
Q ss_pred CeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCc----
Q psy2979 295 SCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS---- 370 (400)
Q Consensus 295 ~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~---- 370 (400)
...+|.||+ -.++..+|+.... .......+..-+++.+ .+...|+|+. ...|..||..+..
T Consensus 106 ~~~vIsgsW------D~~ik~wD~R~~~--~~~~~d~~kkVy~~~v-~g~~LvVg~~------~r~v~iyDLRn~~~~~q 170 (323)
T KOG1036|consen 106 VGCVISGSW------DKTIKFWDPRNKV--VVGTFDQGKKVYCMDV-SGNRLVVGTS------DRKVLIYDLRNLDEPFQ 170 (323)
T ss_pred CCeEEEccc------CccEEEEeccccc--cccccccCceEEEEec-cCCEEEEeec------CceEEEEEcccccchhh
Confidence 455678888 5688999987622 1112222333333433 4455566665 2578899986632
Q ss_pred ---------EEEecCCCCCCCceeeEEEcccccc
Q psy2979 371 ---------WEIMSHLPSARSWLGCVPLQIHKSQ 395 (400)
Q Consensus 371 ---------W~~~~~~~~~r~~~~~~~~~~~~~~ 395 (400)
=+.+.-.| .+.++.+-.+++++.+
T Consensus 171 ~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVav 203 (323)
T KOG1036|consen 171 RRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAV 203 (323)
T ss_pred hccccceeEEEEEEEec-CCCceEEEeecceEEE
Confidence 12222344 6667777777776543
|
|
| >PLN03215 ascorbic acid mannose pathway regulator 1; Provisional | Back alignment and domain information |
|---|
Probab=87.14 E-value=12 Score=34.77 Aligned_cols=98 Identities=11% Similarity=0.041 Sum_probs=58.9
Q ss_pred CCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCc-----Cc--cCcceEEEECCE
Q psy2979 272 VNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMK-----EK--RYRPGIAVIDGK 344 (400)
Q Consensus 272 ~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~-----~~--~~~~~~~~~~~~ 344 (400)
.+.|+.+.. .....-.++.++|++|++.- ...++.++.+-. -+++++.. .+ ....-.+...|+
T Consensus 189 ~~~Wt~l~~--~~~~~~DIi~~kGkfYAvD~-------~G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~Gd 258 (373)
T PLN03215 189 GNVLKALKQ--MGYHFSDIIVHKGQTYALDS-------IGIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGE 258 (373)
T ss_pred CCeeeEccC--CCceeeEEEEECCEEEEEcC-------CCeEEEEecCCc-eeeecceecccccCCcccCceeEEEECCE
Confidence 489999964 33345678888999999942 346777764321 12222110 01 112235566788
Q ss_pred EEEEcCccCCC-------------CCCCeEEEEECCCCcEEEecCCCC
Q psy2979 345 IYVLGGEEGWD-------------GYHDSIECYDVDNDSWEIMSHLPS 379 (400)
Q Consensus 345 lyv~GG~~~~~-------------~~~~~v~~yd~~~~~W~~~~~~~~ 379 (400)
|+++....... ...-.|+..|.+..+|.++..|..
T Consensus 259 LLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd 306 (373)
T PLN03215 259 LYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGD 306 (373)
T ss_pred EEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCC
Confidence 99987641110 112356667988999999988753
|
|
| >KOG4682|consensus | Back alignment and domain information |
|---|
Probab=87.06 E-value=0.39 Score=43.67 Aligned_cols=83 Identities=20% Similarity=0.169 Sum_probs=63.3
Q ss_pred HHHhcCceeceEEEECCeEEehhhHHHhhcCccccccc----------eee----cCCCCHHHH---HHHhhhcccccCc
Q psy2979 10 EARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVLE----------TIR----LPQLSPYFL---HDCVEQCAIIKNN 72 (400)
Q Consensus 10 ~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m~----------~vr----l~~l~~~~l---~~~i~~~~l~~~~ 72 (400)
.|-.+|.=.||+|.+=|.+-.-||.-| ..|+||.+|. -|. =|.++...| ..-+|.+++.++.
T Consensus 62 ~lf~q~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l 140 (488)
T KOG4682|consen 62 NLFLQGENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKL 140 (488)
T ss_pred HHHhcCCCcceehhhccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccH
Confidence 334588889999999999999999999 6789999982 122 246666644 3457789998888
Q ss_pred hhHHHHHHHHHhcCCCccccc
Q psy2979 73 PQCAQLVEEAKLFHLLPDRRS 93 (400)
Q Consensus 73 ~~c~~~l~~a~~~~~~~~~~~ 93 (400)
.....++.+|-.+|+....+.
T Consensus 141 ~dv~gvlAaA~~lqldgl~qr 161 (488)
T KOG4682|consen 141 SDVVGVLAAACLLQLDGLIQR 161 (488)
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 888889999988877665544
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=86.28 E-value=22 Score=31.02 Aligned_cols=167 Identities=15% Similarity=0.066 Sum_probs=78.4
Q ss_pred ccceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEE-----eecCEEEEEECCCCC--------eEEccCCCCcc
Q psy2979 123 VLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCL-----DIVDIVYVAASMHKI--------LHSLGSLKFDF 189 (400)
Q Consensus 123 ~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~-----~~~~~~~~yd~~~~~--------w~~~~~~~~~r 189 (400)
..+++..+|..+++-.-.-..+.+......-.-++. +.+. .....+..||..... ...++ .+-
T Consensus 72 AD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~-~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~---t~~ 147 (327)
T KOG0643|consen 72 ADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNL-ILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP---TPD 147 (327)
T ss_pred ccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcE-EEEEehhhcCcceEEEEEEccCChhhhcccCceEEec---CCc
Confidence 345677888888874333333333332222222333 2222 445567778876332 22222 222
Q ss_pred eeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCce-EEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEE
Q psy2979 190 DVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEW-SYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQ 266 (400)
Q Consensus 190 ~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W-~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~ 266 (400)
.....+.. -++..+.|+.++ ++.+||..++.= ..........-.--.-.-+...|+.|.. |. ..-
T Consensus 148 skit~a~Wg~l~~~ii~Ghe~G-----~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~---Dt----tak 215 (327)
T KOG0643|consen 148 SKITSALWGPLGETIIAGHEDG-----SISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK---DT----TAK 215 (327)
T ss_pred cceeeeeecccCCEEEEecCCC-----cEEEEEcccCceeeechhhhccccccccccCCcceEEeccc---Cc----cce
Confidence 22222322 345555566553 588889887632 1111111000000001124456777766 43 234
Q ss_pred EEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCC
Q psy2979 267 RYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHA 305 (400)
Q Consensus 267 ~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~ 305 (400)
.+|..+-+-.+--....|...+++.-+.+++.+-||.+.
T Consensus 216 l~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA 254 (327)
T KOG0643|consen 216 LVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEA 254 (327)
T ss_pred eeeccceeeEEEeeecccccceecccccceEEecCCcee
Confidence 445544443333222344445556666889988888654
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=86.21 E-value=32 Score=32.80 Aligned_cols=192 Identities=9% Similarity=-0.038 Sum_probs=105.4
Q ss_pred cCEEEEEECCCCCeEEccCCCCcceeeeEEEECC-EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe
Q psy2979 166 VDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDG-FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH 244 (400)
Q Consensus 166 ~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~ 244 (400)
...+|.+|+.+++=+.+...+.. .......-++ +|.+.-...+ ...++.+|..+++++.+.+.+..-......--
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g~-~~~~~~SPDG~~la~~~~~~g---~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPD 287 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQGM-LVVSDVSKDGSKLLLTMAPKG---QPDIYLYDTNTKTLTQITNYPGIDVNGNFVED 287 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCCc-EEeeEECCCCCEEEEEEccCC---CcEEEEEECCCCcEEEcccCCCccCccEECCC
Confidence 46789999988876666543221 1111122244 5555433222 36799999999999888765432222222223
Q ss_pred CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECCe-EEEEcCcCCCC--CCCCeEEEEECCCC
Q psy2979 245 EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSC-IYVLGGWHAST--ENTNRVECYHIAEN 321 (400)
Q Consensus 245 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~-iyv~GG~~~~~--~~~~~v~~yd~~~~ 321 (400)
+.+||..... .+ ...++.+|..+...+++..-.. ... ...-+|+ |.......... .....++.+|+.++
T Consensus 288 G~~I~F~Sdr---~g--~~~Iy~~dl~~g~~~rlt~~g~--~~~-~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g 359 (419)
T PRK04043 288 DKRIVFVSDR---LG--YPNIFMKKLNSGSVEQVVFHGK--NNS-SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD 359 (419)
T ss_pred CCEEEEEECC---CC--CceEEEEECCCCCeEeCccCCC--cCc-eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC
Confidence 4567776543 22 3589999999888877653211 122 2333454 44433222111 01358999999999
Q ss_pred eEEEccCCcCccCcceEEEECCE-EEEEcCccCCCCCCCeEEEEECCCCcEEEec
Q psy2979 322 TWEYKSPMKEKRYRPGIAVIDGK-IYVLGGEEGWDGYHDSIECYDVDNDSWEIMS 375 (400)
Q Consensus 322 ~W~~~~~~~~~~~~~~~~~~~~~-lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 375 (400)
.+..+.... ....-...-||+ |+..... .....++.++...+.=..++
T Consensus 360 ~~~~LT~~~--~~~~p~~SPDG~~I~f~~~~----~~~~~L~~~~l~g~~~~~l~ 408 (419)
T PRK04043 360 YIRRLTANG--VNQFPRFSSDGGSIMFIKYL----GNQSALGIIRLNYNKSFLFP 408 (419)
T ss_pred CeEECCCCC--CcCCeEECCCCCEEEEEEcc----CCcEEEEEEecCCCeeEEee
Confidence 998887632 122122233555 4444322 22356888888776544443
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=85.97 E-value=44 Score=34.21 Aligned_cols=240 Identities=10% Similarity=-0.035 Sum_probs=115.2
Q ss_pred CcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEE-e-----ecCEEEEEECCCCCe--EEccCCCCccee
Q psy2979 121 KVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCL-D-----IVDIVYVAASMHKIL--HSLGSLKFDFDV 191 (400)
Q Consensus 121 ~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~-~-----~~~~~~~yd~~~~~w--~~~~~~~~~r~~ 191 (400)
+....++.+.|+.++... ...++..+ ..++.. ++..+|.. . ....+++++..++.- ..+-.-+.....
T Consensus 149 G~E~~~l~v~d~~tg~~l-~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~ 225 (686)
T PRK10115 149 SRRQYGIRFRNLETGNWY-PELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFY 225 (686)
T ss_pred CcEEEEEEEEECCCCCCC-CccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEE
Confidence 334445666677665411 01111112 234444 44425554 1 224677788776621 111110111222
Q ss_pred eeEEEE-CCEEEEEcccCCCCCCCeEEEEeC--CCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEE
Q psy2979 192 SGIAML-DGFVYAVGGWDGSCRLDSVERYDP--TKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRY 268 (400)
Q Consensus 192 ~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~--~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~y 268 (400)
...... +++..++..... ..+.++.|+. .+..|..+.+.+.... +.....++.+|+.--. ++. ...+...
T Consensus 226 ~~~~~s~d~~~l~i~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ly~~tn~---~~~-~~~l~~~ 298 (686)
T PRK10115 226 VSLHKTTSKHYVVIHLASA--TTSEVLLLDAELADAEPFVFLPRRKDHE-YSLDHYQHRFYLRSNR---HGK-NFGLYRT 298 (686)
T ss_pred EEEEEcCCCCEEEEEEECC--ccccEEEEECcCCCCCceEEEECCCCCE-EEEEeCCCEEEEEEcC---CCC-CceEEEe
Confidence 222222 333333433322 2355777773 2344433333232222 2333456888887533 222 3356666
Q ss_pred eCC-CCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEcc-CCcCccCcceEE-EE-CCE
Q psy2979 269 NPK-VNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKS-PMKEKRYRPGIA-VI-DGK 344 (400)
Q Consensus 269 d~~-~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~~~~~~~~-~~-~~~ 344 (400)
+.. ...|+.+-+.......-.+...++.+++..-.++ ...++.+|..++....+. +.|......+.. .. ++.
T Consensus 299 ~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g----~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 374 (686)
T PRK10115 299 RVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRG----LTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETSR 374 (686)
T ss_pred cCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCC----EEEEEEEcCCCCceEEecCCCCceEeeecccCCCCCce
Confidence 766 5789888655333333344555787777754322 457888887666655554 222111000000 01 134
Q ss_pred EEEEcCccCCCCCCCeEEEEECCCCcEEEecCC
Q psy2979 345 IYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHL 377 (400)
Q Consensus 345 lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~ 377 (400)
+++.- .+......++.||+.+++|+.+...
T Consensus 375 ~~~~~---ss~~~P~~~y~~d~~~~~~~~l~~~ 404 (686)
T PRK10115 375 LRYGY---SSMTTPDTLFELDMDTGERRVLKQT 404 (686)
T ss_pred EEEEE---ecCCCCCEEEEEECCCCcEEEEEec
Confidence 44332 2233457899999999999887643
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=85.51 E-value=35 Score=32.61 Aligned_cols=139 Identities=13% Similarity=0.121 Sum_probs=70.5
Q ss_pred CeEEEEeCCCCceEEccCCCCcccccEEEEeCCE-EEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEE
Q psy2979 214 DSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGM-LYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICA 292 (400)
Q Consensus 214 ~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~ 292 (400)
..++.+|..+++-+.+...+.... .....-+++ |++.... ++ ...++.+|..+.....+..-... .......
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~~---~g--~~~Iy~~d~~~~~~~~lt~~~~~-~~~~~wS 300 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASSK---DG--VLNIYVMGANGGTPSQLTSGAGN-NTEPSWS 300 (429)
T ss_pred cEEEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEec---CC--cEEEEEEECCCCCeEeeccCCCC-cCCEEEC
Confidence 568889998887666655443221 122223554 4443322 33 23688899888777666432211 1112222
Q ss_pred ECCe-EEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECC-EEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 293 LDSC-IYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDG-KIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 293 ~~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
-+++ |+......+ ...++.++..+..-..+.. .. ... ...-+| .|++.++ +.++.+|+.+++
T Consensus 301 pDG~~i~f~s~~~g----~~~I~~~~~~~~~~~~l~~--~~-~~~-~~SpDG~~ia~~~~--------~~i~~~Dl~~g~ 364 (429)
T PRK01742 301 PDGQSILFTSDRSG----SPQVYRMSASGGGASLVGG--RG-YSA-QISADGKTLVMING--------DNVVKQDLTSGS 364 (429)
T ss_pred CCCCEEEEEECCCC----CceEEEEECCCCCeEEecC--CC-CCc-cCCCCCCEEEEEcC--------CCEEEEECCCCC
Confidence 3554 444432211 3467888776554333321 11 111 112244 4544433 257788998888
Q ss_pred EEEec
Q psy2979 371 WEIMS 375 (400)
Q Consensus 371 W~~~~ 375 (400)
++.+.
T Consensus 365 ~~~lt 369 (429)
T PRK01742 365 TEVLS 369 (429)
T ss_pred eEEec
Confidence 87653
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=85.00 E-value=43 Score=33.26 Aligned_cols=150 Identities=11% Similarity=0.235 Sum_probs=73.1
Q ss_pred EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEE-EeCCEEEEEcCccccCCCCcceEEEEeCCCCceeec
Q psy2979 200 FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVV-AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDL 278 (400)
Q Consensus 200 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~ 278 (400)
.+++.||.+ ..+..||+.+++=.. .+.....-.+++ ..+|.+++.++. + ..+..||+.+.+= +
T Consensus 139 ~iLaSgS~D-----gtIrIWDl~tg~~~~--~i~~~~~V~SlswspdG~lLat~s~---D----~~IrIwD~Rsg~~--i 202 (568)
T PTZ00420 139 YIMCSSGFD-----SFVNIWDIENEKRAF--QINMPKKLSSLKWNIKGNLLSGTCV---G----KHMHIIDPRKQEI--A 202 (568)
T ss_pred eEEEEEeCC-----CeEEEEECCCCcEEE--EEecCCcEEEEEECCCCCEEEEEec---C----CEEEEEECCCCcE--E
Confidence 455666655 357888988764211 111111111222 236778887776 4 3689999976542 2
Q ss_pred cCCCC---CceeeeEE----EECCeEEEEcCcCCCCCCCCeEEEEECCC-CeEEEccCCcCccCcceE-EEE---CCEEE
Q psy2979 279 APMLI---PRSGAAIC----ALDSCIYVLGGWHASTENTNRVECYHIAE-NTWEYKSPMKEKRYRPGI-AVI---DGKIY 346 (400)
Q Consensus 279 ~~~~~---~r~~~~~~----~~~~~iyv~GG~~~~~~~~~~v~~yd~~~-~~W~~~~~~~~~~~~~~~-~~~---~~~ly 346 (400)
..+.. .+..-... .-++..++.+|.+... ...+..||..+ ..-...-.+.. ....+ ... .+.+|
T Consensus 203 ~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~--~R~VkLWDlr~~~~pl~~~~ld~--~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 203 SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNN--MREMKLWDLKNTTSALVTMSIDN--ASAPLIPHYDESTGLIY 278 (568)
T ss_pred EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCC--ccEEEEEECCCCCCceEEEEecC--CccceEEeeeCCCCCEE
Confidence 21111 11111111 1244566666654422 24788899874 22111111111 00111 112 47888
Q ss_pred EEcCccCCCCCCCeEEEEECCCCcEEEec
Q psy2979 347 VLGGEEGWDGYHDSIECYDVDNDSWEIMS 375 (400)
Q Consensus 347 v~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 375 (400)
+.|.. + ..|..|+...+.-..+.
T Consensus 279 lsGkG-D-----~tIr~~e~~~~~~~~l~ 301 (568)
T PTZ00420 279 LIGKG-D-----GNCRYYQHSLGSIRKVN 301 (568)
T ss_pred EEEEC-C-----CeEEEEEccCCcEEeec
Confidence 88854 2 46788888776544443
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=84.96 E-value=30 Score=31.48 Aligned_cols=143 Identities=18% Similarity=0.199 Sum_probs=78.6
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCccc--ccEEEEeCCEEEEEcCccccCCCCcceEEEE--eCCCC
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVT--SPAVVAHEGMLYVTGGAILEDGDGIEQVQRY--NPKVN 273 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~--~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~y--d~~~~ 273 (400)
++.+.+.||-+ +..+.|+..++.|-. .++.-.. -.....+++.+.+.|+. +| .+..+ +....
T Consensus 75 ~~~l~aTGGgD-----D~AflW~~~~ge~~~--eltgHKDSVt~~~FshdgtlLATGdm---sG----~v~v~~~stg~~ 140 (399)
T KOG0296|consen 75 NNNLVATGGGD-----DLAFLWDISTGEFAG--ELTGHKDSVTCCSFSHDGTLLATGDM---SG----KVLVFKVSTGGE 140 (399)
T ss_pred CCceEEecCCC-----ceEEEEEccCCccee--EecCCCCceEEEEEccCceEEEecCC---Cc----cEEEEEcccCce
Confidence 45566677755 446778888887532 2221111 12334568899999988 55 34444 44455
Q ss_pred ceeeccCCCCC--ceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCc
Q psy2979 274 QWQDLAPMLIP--RSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGE 351 (400)
Q Consensus 274 ~W~~~~~~~~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~ 351 (400)
+|....++..- ...|. ...|++.|-. ..++|.|...++.-.++-+-+..+...+...-+||-.+.|-.
T Consensus 141 ~~~~~~e~~dieWl~WHp----~a~illAG~~------DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~ 210 (399)
T KOG0296|consen 141 QWKLDQEVEDIEWLKWHP----RAHILLAGST------DGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD 210 (399)
T ss_pred EEEeecccCceEEEEecc----cccEEEeecC------CCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec
Confidence 57665322211 11111 3567777755 457999988775333332223333334444446776666543
Q ss_pred cCCCCCCCeEEEEECCCCc
Q psy2979 352 EGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 352 ~~~~~~~~~v~~yd~~~~~ 370 (400)
...|.++||.+.+
T Consensus 211 ------dgti~~Wn~ktg~ 223 (399)
T KOG0296|consen 211 ------DGTIIVWNPKTGQ 223 (399)
T ss_pred ------CceEEEEecCCCc
Confidence 2357778887763
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=84.41 E-value=26 Score=30.17 Aligned_cols=149 Identities=15% Similarity=0.200 Sum_probs=80.5
Q ss_pred CCeEEccCCCC-----cceee-eEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe--CCEE
Q psy2979 177 KILHSLGSLKF-----DFDVS-GIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH--EGML 248 (400)
Q Consensus 177 ~~w~~~~~~~~-----~r~~~-~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~--~~~i 248 (400)
..|+..+||.. |-.+. .+.--.|.|+..||. .-++..|.++++.+..=. ...-+-|+++.- +++|
T Consensus 99 ~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD------~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~~~~qi 171 (325)
T KOG0649|consen 99 RLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD------GVIYQVDLEDGRIQREYR-GHTDYVHSVVGRNANGQI 171 (325)
T ss_pred hhhhhcCccccCcccCCccceeEeccCCCcEEEecCC------eEEEEEEecCCEEEEEEc-CCcceeeeeeecccCcce
Confidence 34777776643 32222 222236888888883 347888999998754311 123344555542 4455
Q ss_pred EEEcCccccCCCCcceEEEEeCCCCceeecc------CCCCCcee--eeEEEECCeEEEEcCcCCCCCCCCeEEEEECCC
Q psy2979 249 YVTGGAILEDGDGIEQVQRYNPKVNQWQDLA------PMLIPRSG--AAICALDSCIYVLGGWHASTENTNRVECYHIAE 320 (400)
Q Consensus 249 yv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~------~~~~~r~~--~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~ 320 (400)
+ .|+. || .+-.+|.+|.+=.++- ....|..+ .++...+....+.||- .....++...
T Consensus 172 l-sG~E---DG----tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG-------p~lslwhLrs 236 (325)
T KOG0649|consen 172 L-SGAE---DG----TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG-------PKLSLWHLRS 236 (325)
T ss_pred e-ecCC---Cc----cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC-------CceeEEeccC
Confidence 3 5666 65 6888888887754441 12222222 3555556677777763 3455566665
Q ss_pred CeEEEccCCcCccCcceEEEECCEEEEEcC
Q psy2979 321 NTWEYKSPMKEKRYRPGIAVIDGKIYVLGG 350 (400)
Q Consensus 321 ~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG 350 (400)
..-+.+-+.|.+ -+ .+.+.++..++||
T Consensus 237 se~t~vfpipa~--v~-~v~F~~d~vl~~G 263 (325)
T KOG0649|consen 237 SESTCVFPIPAR--VH-LVDFVDDCVLIGG 263 (325)
T ss_pred CCceEEEecccc--ee-EeeeecceEEEec
Confidence 555554444432 22 3334444444444
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=84.36 E-value=54 Score=33.91 Aligned_cols=164 Identities=12% Similarity=0.250 Sum_probs=82.9
Q ss_pred EEEECCEEEEEcccCCCCCCCeEEEEeCCCC--ceEEccCCCCcc-ccc----E------------------EEEeCCEE
Q psy2979 194 IAMLDGFVYAVGGWDGSCRLDSVERYDPTKN--EWSYIEPMKLAV-TSP----A------------------VVAHEGML 248 (400)
Q Consensus 194 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~l~~~~-~~~----~------------------~~~~~~~i 248 (400)
-.++++.||+.... ..+..+|..|+ .|+.-+..+... ..+ + .+.++++|
T Consensus 190 Plvvgg~lYv~t~~------~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV 263 (764)
T TIGR03074 190 PLKVGDTLYLCTPH------NKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRI 263 (764)
T ss_pred CEEECCEEEEECCC------CeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEE
Confidence 35568999997542 45777777766 477655433210 000 1 12344566
Q ss_pred EEEcCccccCCCCcceEEEEeCCCCc--eee-----------ccCCCCC--ceeeeEEEECCeEEEEcCcCCC-----CC
Q psy2979 249 YVTGGAILEDGDGIEQVQRYNPKVNQ--WQD-----------LAPMLIP--RSGAAICALDSCIYVLGGWHAS-----TE 308 (400)
Q Consensus 249 yv~GG~~~~~~~~~~~v~~yd~~~~~--W~~-----------~~~~~~~--r~~~~~~~~~~~iyv~GG~~~~-----~~ 308 (400)
|+. .. ++ .+..+|..|.+ |.. +++.+.. .....-++.++.||+ |+.... ..
T Consensus 264 ~~~-T~---Dg----~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIv-G~~v~d~~~~~~~ 334 (764)
T TIGR03074 264 ILP-TS---DA----RLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVI-GGRVADNYSTDEP 334 (764)
T ss_pred EEe-cC---CC----eEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEE-EecccccccccCC
Confidence 653 22 22 46666665554 432 1122211 123334566777776 432111 12
Q ss_pred CCCeEEEEECCCCe--EEEccCCc-------Cc----cCcc---eEEEE---CCEEEEEcCcc-----------CCCCCC
Q psy2979 309 NTNRVECYHIAENT--WEYKSPMK-------EK----RYRP---GIAVI---DGKIYVLGGEE-----------GWDGYH 358 (400)
Q Consensus 309 ~~~~v~~yd~~~~~--W~~~~~~~-------~~----~~~~---~~~~~---~~~lyv~GG~~-----------~~~~~~ 358 (400)
...+..||..|++ |..-..-| .. +... ...++ .|.+|+--|.. ..+.+.
T Consensus 335 -~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~ 413 (764)
T TIGR03074 335 -SGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYS 413 (764)
T ss_pred -CcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCccccc
Confidence 4679999999885 76532111 10 0100 12233 35677743320 112356
Q ss_pred CeEEEEECCCCc--EEE
Q psy2979 359 DSIECYDVDNDS--WEI 373 (400)
Q Consensus 359 ~~v~~yd~~~~~--W~~ 373 (400)
+++...|++|++ |..
T Consensus 414 ~slvALD~~TGk~~W~~ 430 (764)
T TIGR03074 414 SSLVALDATTGKERWVF 430 (764)
T ss_pred ceEEEEeCCCCceEEEe
Confidence 889999999875 765
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes | Back alignment and domain information |
|---|
Probab=84.09 E-value=27 Score=30.28 Aligned_cols=150 Identities=15% Similarity=0.226 Sum_probs=75.2
Q ss_pred eeEEEECCeEEEEE--------eecCEEEEEE---CCCCCeEE--ccCCCC-------cceeeeEEEECCEEEEEcccCC
Q psy2979 150 HGLVVSGRNTIYCL--------DIVDIVYVAA---SMHKILHS--LGSLKF-------DFDVSGIAMLDGFVYAVGGWDG 209 (400)
Q Consensus 150 ~~~~~~~~~~iyv~--------~~~~~~~~yd---~~~~~w~~--~~~~~~-------~r~~~~~~~~~~~iyv~GG~~~ 209 (400)
.++-+++|. +|.+ ......+.|+ ...+.|+. ++..+. .-.-|+.+.+++.-|.+|=.++
T Consensus 78 mSMGv~~NR-Lfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnG 156 (367)
T PF12217_consen 78 MSMGVVGNR-LFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNG 156 (367)
T ss_dssp B-EEEETTE-EEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-
T ss_pred eeeeeecce-eeEEEeehhhhhhhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccC
Confidence 345678999 9888 2223344454 23566864 333333 3567888889888889987776
Q ss_pred CCCCCeEEE--EeCCC----C-ceEEcc-CCCCcccccEEEEeCCEEEEEcCccccCCCC-cceEEEEeCCCCceeeccC
Q psy2979 210 SCRLDSVER--YDPTK----N-EWSYIE-PMKLAVTSPAVVAHEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLAP 280 (400)
Q Consensus 210 ~~~~~~v~~--yd~~~----~-~W~~~~-~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~~ 280 (400)
+.....+-. |...- . .=..++ .....-...++-..+|.+|++--.+ .+.. -+.+.+-+.....|+.+.-
T Consensus 157 D~sPRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt--~~~~~GS~L~rs~d~G~~w~slrf 234 (367)
T PF12217_consen 157 DVSPRELGFLYFSDAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGT--LPTNPGSSLHRSDDNGQNWSSLRF 234 (367)
T ss_dssp SSSS-EEEEEEETTTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES---TTS---EEEEESSTTSS-EEEE-
T ss_pred CCCcceeeEEEecccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCc--CCCCCcceeeeecccCCchhhccc
Confidence 544444332 21110 0 111222 2223334445567899999985332 2222 3466777777888998852
Q ss_pred C-CCCceeeeEEEECCeEEEEcC
Q psy2979 281 M-LIPRSGAAICALDSCIYVLGG 302 (400)
Q Consensus 281 ~-~~~r~~~~~~~~~~~iyv~GG 302 (400)
. ..-....-.+..++.||++|-
T Consensus 235 p~nvHhtnlPFakvgD~l~mFgs 257 (367)
T PF12217_consen 235 PNNVHHTNLPFAKVGDVLYMFGS 257 (367)
T ss_dssp TT---SS---EEEETTEEEEEEE
T ss_pred cccccccCCCceeeCCEEEEEec
Confidence 2 222333445677999999985
|
This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=84.05 E-value=56 Score=33.82 Aligned_cols=35 Identities=11% Similarity=-0.011 Sum_probs=25.9
Q ss_pred eeEEEECCeEEEEEeecCEEEEEECCCCC--eEEccCC
Q psy2979 150 HGLVVSGRNTIYCLDIVDIVYVAASMHKI--LHSLGSL 185 (400)
Q Consensus 150 ~~~~~~~~~~iyv~~~~~~~~~yd~~~~~--w~~~~~~ 185 (400)
.+-+++++. +|+....+.++.+|..+++ |+.-+..
T Consensus 188 ~TPlvvgg~-lYv~t~~~~V~ALDa~TGk~lW~~d~~~ 224 (764)
T TIGR03074 188 ATPLKVGDT-LYLCTPHNKVIALDAATGKEKWKFDPKL 224 (764)
T ss_pred cCCEEECCE-EEEECCCCeEEEEECCCCcEEEEEcCCC
Confidence 344667888 9999777888999988765 8765543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=83.89 E-value=10 Score=36.64 Aligned_cols=104 Identities=16% Similarity=0.085 Sum_probs=58.9
Q ss_pred EEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEE-------ccCC
Q psy2979 160 IYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSY-------IEPM 232 (400)
Q Consensus 160 iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-------~~~l 232 (400)
||++.....++++|+..++|-.-=....+--.+....--+.|+++||.++ .|+.|||.+.+-.. +++.
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g-----~VEfwDpR~ksrv~~l~~~~~v~s~ 222 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDG-----VVEFWDPRDKSRVGTLDAASSVNSH 222 (703)
T ss_pred EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCc-----eEEEecchhhhhheeeecccccCCC
Confidence 88888889999999999998532111211111111112346788888664 58999998775321 2223
Q ss_pred CCccccc--EEEEe-CCEEEEEcCccccCCCCcceEEEEeCCCCc
Q psy2979 233 KLAVTSP--AVVAH-EGMLYVTGGAILEDGDGIEQVQRYNPKVNQ 274 (400)
Q Consensus 233 ~~~~~~~--~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 274 (400)
|..-... ++..+ |+-|-+.-|.. + ..++.||..+.+
T Consensus 223 pg~~~~~svTal~F~d~gL~~aVGts--~----G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 223 PGGDAAPSVTALKFRDDGLHVAVGTS--T----GSVLIYDLRASK 261 (703)
T ss_pred ccccccCcceEEEecCCceeEEeecc--C----CcEEEEEcccCC
Confidence 3222222 33333 32444443432 3 379999987664
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=83.26 E-value=51 Score=32.75 Aligned_cols=106 Identities=8% Similarity=0.042 Sum_probs=53.1
Q ss_pred CEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeE-EEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEE
Q psy2979 246 GMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAI-CALDSCIYVLGGWHASTENTNRVECYHIAENTWE 324 (400)
Q Consensus 246 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 324 (400)
..+++.||. ++ .+..||..+.+=. ..+..+....++ ...+|.+++.++. ...+..||+.+++-.
T Consensus 138 ~~iLaSgS~---Dg----tIrIWDl~tg~~~--~~i~~~~~V~SlswspdG~lLat~s~------D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 138 YYIMCSSGF---DS----FVNIWDIENEKRA--FQINMPKKLSSLKWNIKGNLLSGTCV------GKHMHIIDPRKQEIA 202 (568)
T ss_pred CeEEEEEeC---CC----eEEEEECCCCcEE--EEEecCCcEEEEEECCCCCEEEEEec------CCEEEEEECCCCcEE
Confidence 345667776 44 6888998766411 111111111222 2236788777765 457999999876532
Q ss_pred E-ccCCcCccCcceEE--E--ECCEEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 325 Y-KSPMKEKRYRPGIA--V--IDGKIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 325 ~-~~~~~~~~~~~~~~--~--~~~~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
. +......+..-... . -++..++.+|. +. .....|.+||..+
T Consensus 203 ~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~-d~-~~~R~VkLWDlr~ 249 (568)
T PTZ00420 203 SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGF-SK-NNMREMKLWDLKN 249 (568)
T ss_pred EEEecccCCceeEEEEeeeEcCCCCEEEEEEc-CC-CCccEEEEEECCC
Confidence 1 11111111000111 1 24455666665 32 1234688999874
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=82.50 E-value=54 Score=32.47 Aligned_cols=197 Identities=11% Similarity=0.074 Sum_probs=99.0
Q ss_pred eecCEEEEEECCCCCeEEccCC--CCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCc------------eEE
Q psy2979 164 DIVDIVYVAASMHKILHSLGSL--KFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNE------------WSY 228 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~--~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~------------W~~ 228 (400)
.....++.||+.. .|...+-+ +.-|.--+++.. ++++|-+|+.. ++--||+.+.+ |+-
T Consensus 44 Rt~g~IEiwN~~~-~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg------~i~EwDl~~lk~~~~~d~~gg~IWsi 116 (691)
T KOG2048|consen 44 RTDGNIEIWNLSN-NWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSG------SITEWDLHTLKQKYNIDSNGGAIWSI 116 (691)
T ss_pred ccCCcEEEEccCC-CceeeEEEecCCCCceeeEEEccCCeEEeecCCc------eEEEEecccCceeEEecCCCcceeEE
Confidence 5556789999986 68766544 445666677777 78999988743 34444444332 332
Q ss_pred ccCCCCcccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEE-EEcCcCCC
Q psy2979 229 IEPMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIY-VLGGWHAS 306 (400)
Q Consensus 229 ~~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iy-v~GG~~~~ 306 (400)
. --|.. .-.++. .+|.+|.+.+. . .+..|+. .++......-....+.... ++||..+
T Consensus 117 a-i~p~~--~~l~IgcddGvl~~~s~~---p-----~~I~~~r---------~l~rq~sRvLslsw~~~~~~i~~Gs~D- 175 (691)
T KOG2048|consen 117 A-INPEN--TILAIGCDDGVLYDFSIG---P-----DKITYKR---------SLMRQKSRVLSLSWNPTGTKIAGGSID- 175 (691)
T ss_pred E-eCCcc--ceEEeecCCceEEEEecC---C-----ceEEEEe---------ecccccceEEEEEecCCccEEEecccC-
Confidence 1 11111 111111 24455555443 1 2222322 2222222222333344444 6666521
Q ss_pred CCCCCeEEEEECCCCeEEEccCCcCcc-------CcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCC
Q psy2979 307 TENTNRVECYHIAENTWEYKSPMKEKR-------YRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPS 379 (400)
Q Consensus 307 ~~~~~~v~~yd~~~~~W~~~~~~~~~~-------~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 379 (400)
..+-++|..+++=-.+-.|...+ ...++..+.+...+.|-. ...|..+|+...+-.+--.. .
T Consensus 176 ----g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS------~G~V~FWd~~~gTLiqS~~~-h 244 (691)
T KOG2048|consen 176 ----GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDS------AGTVTFWDSIFGTLIQSHSC-H 244 (691)
T ss_pred ----ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecC------CceEEEEcccCcchhhhhhh-h
Confidence 23667777766544432222211 122344555556666643 34688888887653332111 1
Q ss_pred CCCceeeEEEcccccccccC
Q psy2979 380 ARSWLGCVPLQIHKSQFVDK 399 (400)
Q Consensus 380 ~r~~~~~~~~~~~~~~~~~~ 399 (400)
.-.-.++++-++...+|..|
T Consensus 245 ~adVl~Lav~~~~d~vfsaG 264 (691)
T KOG2048|consen 245 DADVLALAVADNEDRVFSAG 264 (691)
T ss_pred hcceeEEEEcCCCCeEEEcc
Confidence 22345566667777777766
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=81.86 E-value=33 Score=29.63 Aligned_cols=256 Identities=12% Similarity=0.099 Sum_probs=125.9
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCccccee-eeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCCCCc
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISK-HGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFD 188 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~-~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~ 188 (400)
..+++..|++ .++..+...+++...- ++.+-+. ........+..........+..||..+++=.++.....+
T Consensus 10 ~viLvsA~YD-----hTIRfWqa~tG~C~rT--iqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h 82 (311)
T KOG0315|consen 10 PVILVSAGYD-----HTIRFWQALTGICSRT--IQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGH 82 (311)
T ss_pred ceEEEeccCc-----ceeeeeehhcCeEEEE--EecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEecc
Confidence 4677777766 4566666666654321 1111111 011111122122224456788999988763333333333
Q ss_pred ceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCE-EEEEcCccccCCCCcceE
Q psy2979 189 FDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGM-LYVTGGAILEDGDGIEQV 265 (400)
Q Consensus 189 r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~v 265 (400)
+.+-.++-+ +++-...||.++ ++-++|...-+-+..=..+.+. -+++..-++ =.+.|-. ...+
T Consensus 83 ~kNVtaVgF~~dgrWMyTgseDg-----t~kIWdlR~~~~qR~~~~~spV--n~vvlhpnQteLis~dq-------sg~i 148 (311)
T KOG0315|consen 83 TKNVTAVGFQCDGRWMYTGSEDG-----TVKIWDLRSLSCQRNYQHNSPV--NTVVLHPNQTELISGDQ-------SGNI 148 (311)
T ss_pred CCceEEEEEeecCeEEEecCCCc-----eEEEEeccCcccchhccCCCCc--ceEEecCCcceEEeecC-------CCcE
Confidence 344444333 677667777664 4666777652222111111111 122222222 2233333 3479
Q ss_pred EEEeCCCCceeeccCCCCCce-eeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeE-EEccCCc--CccCcceE-E
Q psy2979 266 QRYNPKVNQWQDLAPMLIPRS-GAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTW-EYKSPMK--EKRYRPGI-A 339 (400)
Q Consensus 266 ~~yd~~~~~W~~~~~~~~~r~-~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W-~~~~~~~--~~~~~~~~-~ 339 (400)
+.+|..++.-+.. .+|..-. --.+++. +|+..+ ++.+ ....++++..+++- +.+.|.. ..+.+|.. +
T Consensus 149 rvWDl~~~~c~~~-liPe~~~~i~sl~v~~dgsml~-a~nn-----kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C 221 (311)
T KOG0315|consen 149 RVWDLGENSCTHE-LIPEDDTSIQSLTVMPDGSMLA-AANN-----KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRC 221 (311)
T ss_pred EEEEccCCccccc-cCCCCCcceeeEEEcCCCcEEE-EecC-----CccEEEEEccCCCccccceEhhheecccceEEEE
Confidence 9999999876654 2333222 2233333 555444 3322 23566666655332 1222221 23344432 2
Q ss_pred EE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCC-CCCceeeEEEcccccccccCC
Q psy2979 340 VI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPS-ARSWLGCVPLQIHKSQFVDKS 400 (400)
Q Consensus 340 ~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~r~~~~~~~~~~~~~~~~~~~ 400 (400)
.+ ++|..+..+. -..+.+++.++. .+.-..+.. .|-.-.+++-.+..|++.+++
T Consensus 222 ~lSPd~k~lat~ss------dktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTass 278 (311)
T KOG0315|consen 222 LLSPDVKYLATCSS------DKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASS 278 (311)
T ss_pred EECCCCcEEEeecC------CceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCC
Confidence 23 6776666654 256788887776 222222222 356677888888888888775
|
|
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=81.74 E-value=33 Score=30.58 Aligned_cols=135 Identities=9% Similarity=0.081 Sum_probs=73.5
Q ss_pred CEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCce--eeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeE
Q psy2979 246 GMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRS--GAAICALDSCIYVLGGWHASTENTNRVECYHIAENTW 323 (400)
Q Consensus 246 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~--~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 323 (400)
..|.+.|.. | +.+-.||...-.-.+.-..-.... ..-.+.-.|...++|-. ...+..||..|-+.
T Consensus 184 e~ILiS~sr---D----~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTd------Hp~~rlYdv~T~Qc 250 (430)
T KOG0640|consen 184 ETILISGSR---D----NTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTD------HPTLRLYDVNTYQC 250 (430)
T ss_pred hheEEeccC---C----CeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecC------CCceeEEeccceeE
Confidence 567777766 4 367777765433211100000000 01112225666666643 56888999988887
Q ss_pred EEccCCcCccCcce-EEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEE-EecCCCCCCCceeeEEEcccccccccC
Q psy2979 324 EYKSPMKEKRYRPG-IAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWE-IMSHLPSARSWLGCVPLQIHKSQFVDK 399 (400)
Q Consensus 324 ~~~~~~~~~~~~~~-~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~r~~~~~~~~~~~~~~~~~~ 399 (400)
..-+.........- .+-+ .++||+.|.. + ..|-.||-.+++-. .++.-..+-.-+++.+-.|.+|++-.|
T Consensus 251 fvsanPd~qht~ai~~V~Ys~t~~lYvTaSk-D-----G~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG 324 (430)
T KOG0640|consen 251 FVSANPDDQHTGAITQVRYSSTGSLYVTASK-D-----GAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG 324 (430)
T ss_pred eeecCcccccccceeEEEecCCccEEEEecc-C-----CcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecC
Confidence 65554223332222 2223 6899999977 3 25667776665322 223333444556667778888887766
|
|
| >COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.56 E-value=37 Score=29.93 Aligned_cols=254 Identities=10% Similarity=0.076 Sum_probs=122.0
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCCC-Cc
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLK-FD 188 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~-~~ 188 (400)
+..+++|+.. ++..-|---..|.+....--....|++.+++++ =++......++.-+-...+|.+++--. .+
T Consensus 55 ~~gwlVg~rg------tiletdd~g~tw~qal~~~gr~~f~sv~f~~~e-gw~vGe~sqll~T~DgGqsWARi~~~e~~e 127 (339)
T COG4447 55 SHGWLVGGRG------TILETDDGGITWAQALDFLGRHAFHSVSFLGME-GWIVGEPSQLLHTTDGGQSWARIPLSEKLE 127 (339)
T ss_pred cceEEEcCcc------eEEEecCCcccchhhhchhhhhheeeeeeeccc-ccccCCcceEEEecCCCcchhhchhhcCCC
Confidence 4566777754 344445555678864332222334555556654 444444445555555667898876422 11
Q ss_pred ceeeeEEEECC-EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCc--ccccEEEEeCCEEEEEcCccccCCCCcceE
Q psy2979 189 FDVSGIAMLDG-FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLA--VTSPAVVAHEGMLYVTGGAILEDGDGIEQV 265 (400)
Q Consensus 189 r~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~--~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v 265 (400)
-.-.++..+++ .-|++|- ...++.=+---+.|+.+.+-..+ ..+.-+.+.+|...++|-. . +-.
T Consensus 128 g~~~sI~f~d~q~g~m~gd------~Gail~T~DgGk~Wk~l~e~~v~~~~~n~ia~s~dng~vaVg~r---G----s~f 194 (339)
T COG4447 128 GFPDSITFLDDQRGEMLGD------QGAILKTTDGGKNWKALVEKAVGLAVPNEIARSADNGYVAVGAR---G----SFF 194 (339)
T ss_pred CCcceeEEecchhhhhhcc------cceEEEecCCcccHhHhcccccchhhhhhhhhhccCCeEEEecC---c----ceE
Confidence 22223333433 3344432 12344434445678776542222 2222233445555555543 1 011
Q ss_pred EEEeCCCCceeeccCCCCCceeeeEEEE-CC--eEEEEcCcCCCCCCCCeEEEEECCCCeEEEccC-CcCccCcceEE--
Q psy2979 266 QRYNPKVNQWQDLAPMLIPRSGAAICAL-DS--CIYVLGGWHASTENTNRVECYHIAENTWEYKSP-MKEKRYRPGIA-- 339 (400)
Q Consensus 266 ~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~--~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~-~~~~~~~~~~~-- 339 (400)
...++-...|..-.+ ...|..-++..- .+ -+++.||. ..-....+.-+.|+..+. ....|...+..
T Consensus 195 ~T~~aGqt~~~~~g~-~s~~~letmg~adag~~g~la~g~q-------g~~f~~~~~gD~wsd~~~~~~~g~~~~Gl~d~ 266 (339)
T COG4447 195 STWGAGQTVWLPHGR-NSSRRLETMGLADAGSKGLLARGGQ-------GDQFSWVCGGDEWSDQGEPVNLGRRSWGLLDF 266 (339)
T ss_pred ecCCCCccEEeccCC-CccchhcccccccCCccceEEEccc-------cceeecCCCcccccccccchhcccCCCccccc
Confidence 223333333332221 222222222222 23 46677764 234455667788988763 22343344432
Q ss_pred --EECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCC-ceeeEEEccccccccc
Q psy2979 340 --VIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARS-WLGCVPLQIHKSQFVD 398 (400)
Q Consensus 340 --~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~-~~~~~~~~~~~~~~~~ 398 (400)
.-.+.+||.|+- .++..=--...+|++...-+..-. -++++.+.+++-+++|
T Consensus 267 a~~a~~~v~v~G~g-------Gnvl~StdgG~t~skd~g~~er~s~l~~V~~ts~~~~~l~G 321 (339)
T COG4447 267 APRAPPEVWVSGIG-------GNVLASTDGGTTWSKDGGVEERVSNLYSVVFTSPKAGFLCG 321 (339)
T ss_pred cccCCCCeEEeccC-------ccEEEecCCCeeEeccCChhhhhhhhheEEeccCCceEEEc
Confidence 226889998863 133333334457887665554434 4556666665555543
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=81.03 E-value=35 Score=29.28 Aligned_cols=135 Identities=12% Similarity=0.193 Sum_probs=80.4
Q ss_pred CeEEEEeCCCCceEEc-cCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEE
Q psy2979 214 DSVERYDPTKNEWSYI-EPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICA 292 (400)
Q Consensus 214 ~~v~~yd~~~~~W~~~-~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~ 292 (400)
.++-.+||..+.--+- +.-.......+ .+.++.-+..||- | ..++.||..|.+--+ .+..--.-..++.
T Consensus 39 rtvrLWNp~rg~liktYsghG~EVlD~~-~s~Dnskf~s~Gg---D----k~v~vwDV~TGkv~R--r~rgH~aqVNtV~ 108 (307)
T KOG0316|consen 39 RTVRLWNPLRGALIKTYSGHGHEVLDAA-LSSDNSKFASCGG---D----KAVQVWDVNTGKVDR--RFRGHLAQVNTVR 108 (307)
T ss_pred ceEEeecccccceeeeecCCCceeeecc-ccccccccccCCC---C----ceEEEEEcccCeeee--ecccccceeeEEE
Confidence 4567778776653221 11111111222 2334444555554 3 478999998876322 1111111223344
Q ss_pred ECC--eEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 293 LDS--CIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 293 ~~~--~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
+|+ .+.+.|++ ..++..+|-..+..+.+..+...+..-..+.+.+...|.|-. ++ .+-.||+..++
T Consensus 109 fNeesSVv~Sgsf------D~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~-DG-----tvRtydiR~G~ 176 (307)
T KOG0316|consen 109 FNEESSVVASGSF------DSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSV-DG-----TVRTYDIRKGT 176 (307)
T ss_pred ecCcceEEEeccc------cceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeecc-CC-----cEEEEEeecce
Confidence 433 67777777 568899999999988888888788887888888888777765 32 45677776654
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=81.00 E-value=51 Score=31.18 Aligned_cols=147 Identities=12% Similarity=0.108 Sum_probs=81.9
Q ss_pred CEEEEEECCCC-----CeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCc---eE-EccCCCCccc
Q psy2979 167 DIVYVAASMHK-----ILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNE---WS-YIEPMKLAVT 237 (400)
Q Consensus 167 ~~~~~yd~~~~-----~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~---W~-~~~~l~~~~~ 237 (400)
+.++..|.... .|..+.+-.. -....+...++.+|+....+ .....+..+++.... |. .+.+-.....
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~~~-~~~~~v~~~~~~~yi~Tn~~--a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~ 328 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPRED-GVEYYVDHHGDRLYILTNDD--APNGRLVAVDLADPSPAEWWTVLIPEDEDVS 328 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEESSS-S-EEEEEEETTEEEEEE-TT---TT-EEEEEETTSTSGGGEEEEEE--SSSEE
T ss_pred CeEEEEeccccCCCcCCcEEEeCCCC-ceEEEEEccCCEEEEeeCCC--CCCcEEEEecccccccccceeEEcCCCCcee
Confidence 67888888875 6777655222 22233444588999886632 334567778877665 66 4444333334
Q ss_pred ccEEEEeCCEEEEEcCccccCCCCcceEEEEeCC-CCceeeccCCCCCceeeeEE-EE-CCe-EEEEcCcCCCCCCCCeE
Q psy2979 238 SPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPK-VNQWQDLAPMLIPRSGAAIC-AL-DSC-IYVLGGWHASTENTNRV 313 (400)
Q Consensus 238 ~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~-~~~W~~~~~~~~~r~~~~~~-~~-~~~-iyv~GG~~~~~~~~~~v 313 (400)
--.+...++.+++.--. ++ ...+..||.. +..-..+ ++|..-...... .. .+. .|.+.+... ..++
T Consensus 329 l~~~~~~~~~Lvl~~~~---~~--~~~l~v~~~~~~~~~~~~-~~p~~g~v~~~~~~~~~~~~~~~~ss~~~----P~~~ 398 (414)
T PF02897_consen 329 LEDVSLFKDYLVLSYRE---NG--SSRLRVYDLDDGKESREI-PLPEAGSVSGVSGDFDSDELRFSYSSFTT----PPTV 398 (414)
T ss_dssp EEEEEEETTEEEEEEEE---TT--EEEEEEEETT-TEEEEEE-ESSSSSEEEEEES-TT-SEEEEEEEETTE----EEEE
T ss_pred EEEEEEECCEEEEEEEE---CC--ccEEEEEECCCCcEEeee-cCCcceEEeccCCCCCCCEEEEEEeCCCC----CCEE
Confidence 44556678888877443 43 5689999998 3333333 333321111111 11 233 344445432 4689
Q ss_pred EEEECCCCeEEEc
Q psy2979 314 ECYHIAENTWEYK 326 (400)
Q Consensus 314 ~~yd~~~~~W~~~ 326 (400)
+.||+.+++.+.+
T Consensus 399 y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 399 YRYDLATGELTLL 411 (414)
T ss_dssp EEEETTTTCEEEE
T ss_pred EEEECCCCCEEEE
Confidence 9999999987654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=80.76 E-value=49 Score=30.87 Aligned_cols=186 Identities=11% Similarity=0.118 Sum_probs=93.9
Q ss_pred EEEE-eecCEEEEEECCCCCe-EEccCCCCcceeeeEEEE---CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCC
Q psy2979 160 IYCL-DIVDIVYVAASMHKIL-HSLGSLKFDFDVSGIAML---DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKL 234 (400)
Q Consensus 160 iyv~-~~~~~~~~yd~~~~~w-~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~ 234 (400)
+|++ ...+++...|..+++- ..++... ..|..... +..+|+.+. + ..+..+|+.+.+ .+...+.
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~---~~h~~~~~s~Dgr~~yv~~r-d-----g~vsviD~~~~~--~v~~i~~ 76 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGG---APHAGLKFSPDGRYLYVANR-D-----GTVSVIDLATGK--VVATIKV 76 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-ST---TEEEEEE-TT-SSEEEEEET-T-----SEEEEEETTSSS--EEEEEE-
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCC---CceeEEEecCCCCEEEEEcC-C-----CeEEEEECCccc--EEEEEec
Confidence 3344 4567888899887653 2333221 22333332 457999853 2 368999999887 4444555
Q ss_pred cccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCcee-ecc--CC----CCCceeeeEEEECCeEEEEcCcCCC
Q psy2979 235 AVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQ-DLA--PM----LIPRSGAAICALDSCIYVLGGWHAS 306 (400)
Q Consensus 235 ~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~-~~~--~~----~~~r~~~~~~~~~~~iyv~GG~~~~ 306 (400)
.....+.+. -+|+..+++.. . .+.+..+|..+.+=- .++ .+ +.+|-..-.+...+..|++.-.+
T Consensus 77 G~~~~~i~~s~DG~~~~v~n~---~---~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd-- 148 (369)
T PF02239_consen 77 GGNPRGIAVSPDGKYVYVANY---E---PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD-- 148 (369)
T ss_dssp SSEEEEEEE--TTTEEEEEEE---E---TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT--
T ss_pred CCCcceEEEcCCCCEEEEEec---C---CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc--
Confidence 554444443 35554444433 1 357889998776532 222 12 23444333344456656665432
Q ss_pred CCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE-CCEEEEEcCccCCCCCCCeEEEEECCCCcEE
Q psy2979 307 TENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI-DGKIYVLGGEEGWDGYHDSIECYDVDNDSWE 372 (400)
Q Consensus 307 ~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~ 372 (400)
...++..|....+=.........+..|.+..- +++-|+++-. ..+.+-+.|.++++-.
T Consensus 149 ---~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~-----~sn~i~viD~~~~k~v 207 (369)
T PF02239_consen 149 ---TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAAN-----GSNKIAVIDTKTGKLV 207 (369)
T ss_dssp ---TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEG-----GGTEEEEEETTTTEEE
T ss_pred ---CCeEEEEEeccccccceeeecccccccccccCcccceeeeccc-----ccceeEEEeeccceEE
Confidence 46788888665432222233445555555444 4444444322 2357888888877533
|
... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 400 | ||||
| 2dyh_A | 318 | Crystal Structure Of The Keap1 Protein In Complexed | 5e-35 | ||
| 1x2j_A | 316 | Structural Basis For The Defects Of Human Lung Canc | 6e-35 | ||
| 3vng_A | 309 | Crystal Structure Of Keap1 In Complex With Syntheti | 2e-34 | ||
| 1u6d_X | 308 | Crystal Structure Of The Kelch Domain Of Human Keap | 2e-34 | ||
| 1zgk_A | 308 | 1.35 Angstrom Structure Of The Kelch Domain Of Keap | 8e-32 | ||
| 2vpj_A | 301 | Crystal Structure Of The Kelch Domain Of Human Klhl | 1e-31 | ||
| 2vpj_A | 301 | Crystal Structure Of The Kelch Domain Of Human Klhl | 2e-23 | ||
| 2xn4_A | 302 | Crystal Structure Of The Kelch Domain Of Human Klhl | 8e-30 | ||
| 2xn4_A | 302 | Crystal Structure Of The Kelch Domain Of Human Klhl | 4e-04 | ||
| 2woz_A | 318 | The Novel Beta-Propeller Of The Btb-Kelch Protein K | 2e-17 | ||
| 2woz_A | 318 | The Novel Beta-Propeller Of The Btb-Kelch Protein K | 3e-05 | ||
| 3ii7_A | 306 | Crystal Structure Of The Kelch Domain Of Human Klhl | 5e-13 | ||
| 4asc_A | 315 | Crystal Structure Of The Kelch Domain Of Human Kbtb | 8e-12 | ||
| 2nn2_A | 133 | Crystal Structure Of The Btb Domain From The LrfZBT | 2e-07 | ||
| 2if5_A | 120 | Structure Of The Poz Domain Of Human Lrf, A Master | 2e-07 | ||
| 2ihc_A | 124 | Crystal Structure Of The Bric-A-Brac (Btb) Domain O | 4e-06 | ||
| 2z8h_A | 138 | Structure Of Mouse Bach1 Btb Domain Length = 138 | 6e-06 | ||
| 3ohu_A | 125 | Crystal Structure Of The Human Bach2 Poz Domain, Fo | 8e-06 | ||
| 3ga1_A | 129 | Crystal Structure Of The Human Nac1 Poz Domain Leng | 1e-05 | ||
| 3m52_A | 117 | Crystal Structure Of The Btb Domain From The Miz-1Z | 2e-05 | ||
| 2q81_A | 119 | Crystal Structure Of The Miz-1 BtbPOZ DOMAIN Length | 2e-05 | ||
| 3m8v_A | 124 | Crystal Structure Of The Btb Domain From KaisoZBTB3 | 3e-05 | ||
| 3fkc_A | 116 | Crystal Structure Of Human Zinc Finger And Btb Doma | 3e-05 | ||
| 4ap2_A | 297 | Crystal Structure Of The Human Klhl11-cul3 Complex | 9e-05 | ||
| 3i3n_A | 279 | Crystal Structure Of The Btb-Back Domains Of Human | 1e-04 |
| >pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With The N-Terminal Region Of The Nrf2 Transcription Factor Length = 318 | Back alignment and structure |
|
| >pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer Somatic Mutations In The Repression Activity Of Keap1 On Nrf2 Length = 316 | Back alignment and structure |
|
| >pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small Molecular Based On A Co-crystallization Length = 309 | Back alignment and structure |
|
| >pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1 Length = 308 | Back alignment and structure |
|
| >pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1 Length = 308 | Back alignment and structure |
|
| >pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12 Length = 301 | Back alignment and structure |
|
| >pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12 Length = 301 | Back alignment and structure |
|
| >pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2 (mayven) Length = 302 | Back alignment and structure |
|
| >pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2 (mayven) Length = 302 | Back alignment and structure |
|
| >pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1 Provides The Binding Site For Lasp-1 That Is Necessary For Pseudopodia Extension Length = 318 | Back alignment and structure |
|
| >pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1 Provides The Binding Site For Lasp-1 That Is Necessary For Pseudopodia Extension Length = 318 | Back alignment and structure |
|
| >pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7 Length = 306 | Back alignment and structure |
|
| >pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5 Length = 315 | Back alignment and structure |
|
| >pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7 Transcriptional Regulator Length = 133 | Back alignment and structure |
|
| >pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master Regulator Of Oncogenesis Length = 120 | Back alignment and structure |
|
| >pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human Bach1 Length = 124 | Back alignment and structure |
|
| >pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain Length = 138 | Back alignment and structure |
|
| >pdb|3OHU|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form I Length = 125 | Back alignment and structure |
|
| >pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain Length = 129 | Back alignment and structure |
|
| >pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17 Transcription Regulator Length = 117 | Back alignment and structure |
|
| >pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN Length = 119 | Back alignment and structure |
|
| >pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM II Length = 124 | Back alignment and structure |
|
| >pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain Containing 33 Length = 116 | Back alignment and structure |
|
| >pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a Resolution Length = 297 | Back alignment and structure |
|
| >pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11 Length = 279 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 282 bits (724), Expect = 9e-94
Identities = 89/309 (28%), Positives = 143/309 (46%), Gaps = 31/309 (10%)
Query: 96 ITPRTKPRKSAGSINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS 155
++ RT+ R +++ VGG+ K +RSVE + K + W ++ LP + G+V
Sbjct: 2 MSVRTRLRTPMNLPKLMVVVGGQAPKA-IRSVECYDFKEERWHQVAELPSRRCRAGMVYM 60
Query: 156 GRNTIYCL------DIVDIVYV----------AASMHKILHSLGSLKFDFDVSGIAMLDG 199
++ + V V A+M +LG+ A+L+G
Sbjct: 61 A-GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGA----------AVLNG 109
Query: 200 FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDG 259
+YAVGG+DGS L SVE Y+ NEW ++ PM +S V G+LY GG +
Sbjct: 110 LLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASR 169
Query: 260 DGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIA 319
+ V+ YN N+W +A M RSGA + L++ +Y +GG VE Y
Sbjct: 170 QCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLV-RKSVEVYDPT 228
Query: 320 ENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIM-SHLP 378
N W + M R G+ ++G +YV+GG++G S+E Y+ D W ++ S +
Sbjct: 229 TNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDG-SCNLASVEYYNPTTDKWTVVSSCMS 287
Query: 379 SARSWLGCV 387
+ RS+ G
Sbjct: 288 TGRSYAGVT 296
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 195 bits (497), Expect = 9e-60
Identities = 53/197 (26%), Positives = 89/197 (45%), Gaps = 7/197 (3%)
Query: 195 AMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGA 254
L + VGG + SVE YD + W + + +V G+++ GG
Sbjct: 12 MNLPKLMVVVGGQAPKA-IRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGG- 69
Query: 255 ILEDGDGIEQ-VQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRV 313
+G + V Y+P +QW +A M RS L+ +Y +GG+ ST + V
Sbjct: 70 --FNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTG-LSSV 126
Query: 314 ECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDG-YHDSIECYDVDNDSWE 372
E Y+I N W + +PM +R G+ V+ G +Y +GG + ++ECY+ + W
Sbjct: 127 EAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWT 186
Query: 373 IMSHLPSARSWLGCVPL 389
++ + + RS G L
Sbjct: 187 YIAEMSTRRSGAGVGVL 203
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 186 bits (475), Expect = 1e-56
Identities = 76/279 (27%), Positives = 121/279 (43%), Gaps = 45/279 (16%)
Query: 88 LPDRRSAHITPRTKPRKSAGSI-NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFA 146
LP RR + ++ AVGG + + +R+V+ + W +++ +
Sbjct: 48 LPSRRCRA---------GMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDR 98
Query: 147 ISKHGL--------VVSGRNTIYCLDIVDIVY--------VAASMHKILHSLGSLKFDFD 190
S G V G + L V+ Y A M+ S+G
Sbjct: 99 RSTLGAAVLNGLLYAVGGFDGSTGLSSVE-AYNIKSNEWFHVAPMNTRRSSVG------- 150
Query: 191 VSGIAMLDGFVYAVGGWDGSCR--LDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGML 248
+ ++ G +YAVGG+D + R L +VE Y+ T NEW+YI M + V +L
Sbjct: 151 ---VGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLL 207
Query: 249 YVTGGAILEDGDGI-EQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHAST 307
Y GG DG + + V+ Y+P N W+ +A M + R A +CA++ +YV+GG S
Sbjct: 208 YAVGG---HDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSC 264
Query: 308 ENTNRVECYHIAENTWEYKSP-MKEKRYRPGIAVIDGKI 345
N VE Y+ + W S M R G+ VID ++
Sbjct: 265 -NLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDKRL 302
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 282 bits (723), Expect = 1e-93
Identities = 89/315 (28%), Positives = 139/315 (44%), Gaps = 39/315 (12%)
Query: 97 TPRTKPRKSAGSINVIIAVGGED-DKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS 155
PRT+ R A V++ VGG + + VE + KT+ W L + V
Sbjct: 4 GPRTRARLGAN--EVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL 61
Query: 156 GRNTIYCL------DIVDIVYV-------------AASMHKILHSLGSLKFDFDVSGIAM 196
+ IY + + V A M+ G+
Sbjct: 62 H-DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA----------TT 110
Query: 197 LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAIL 256
L +Y GG+DGS R S+ERYDP ++WS + M+ A +V G++Y GG
Sbjct: 111 LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGG--- 167
Query: 257 EDGDGI-EQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVEC 315
DG I V++Y+P W ++ PM RSGA + L+ IYV+GG+ + + + VE
Sbjct: 168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGT-AHLSSVEA 226
Query: 316 YHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMS 375
Y+I ++W + M R G V+ G++Y + G + SIECYD DSWE+++
Sbjct: 227 YNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAG-YDGNSLLSSIECYDPIIDSWEVVT 285
Query: 376 HLPSARSWLGCVPLQ 390
+ + R G L+
Sbjct: 286 SMGTQRCDAGVCVLR 300
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 278 bits (712), Expect = 8e-92
Identities = 94/316 (29%), Positives = 136/316 (43%), Gaps = 40/316 (12%)
Query: 95 HITPRTKPRKSAGSI--NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGL 152
H + PR S +I GG + L +E + W L+ L S
Sbjct: 8 HHSSGLVPRGSHAPKVGRLIYTAGGYFRQS-LSYLEAYNPSNGTWLRLADLQVPRSGLAG 66
Query: 153 VVSGRNTIYCL----------DIVDIVYV----------AASMHKILHSLGSLKFDFDVS 192
V G +Y + + A M + +G
Sbjct: 67 CVVG-GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV-------- 117
Query: 193 GIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTG 252
++DG +YAVGG G +SVERY+P ++EW + PM V +LY G
Sbjct: 118 --GVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVG 175
Query: 253 GAILEDGDGI-EQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTN 311
G DG + Y P+ N+W+ + M RSGA +C L +CIY GG+ + N
Sbjct: 176 GF---DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQ-DQLN 231
Query: 312 RVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSW 371
VE Y + TW + +PMK +R GI V G+IYVLGG +G + DS+ECYD D D+W
Sbjct: 232 SVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDG-HTFLDSVECYDPDTDTW 290
Query: 372 EIMSHLPSARSWLGCV 387
++ + S RS +G
Sbjct: 291 SEVTRMTSGRSGVGVA 306
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 203 bits (519), Expect = 5e-63
Identities = 58/201 (28%), Positives = 93/201 (46%), Gaps = 7/201 (3%)
Query: 192 SGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVT 251
S + +Y GG+ L +E Y+P+ W + +++ + A G+LY
Sbjct: 18 SHAPKVGRLIYTAGGYFRQS-LSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAV 76
Query: 252 GGAILEDGDGIE---QVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTE 308
GG DG + YNP NQW APM +PR+ + +D IY +GG H
Sbjct: 77 GGRN-NSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIH 135
Query: 309 NTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDN 368
N VE Y + W +PM +R G+AV++ +Y +GG +G +S ECY +
Sbjct: 136 -HNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGT-NRLNSAECYYPER 193
Query: 369 DSWEIMSHLPSARSWLGCVPL 389
+ W +++ + + RS G L
Sbjct: 194 NEWRMITAMNTIRSGAGVCVL 214
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 180 bits (458), Expect = 7e-54
Identities = 71/274 (25%), Positives = 110/274 (40%), Gaps = 44/274 (16%)
Query: 88 LPDRRSAHITPRTKPRKSAGSI-NVIIAVGGE----DDKVVLRSVEGFCVKTKVWKTLSC 142
L RS + + ++ AVGG D +++ + T W +
Sbjct: 57 LQVPRSGL---------AGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAP 107
Query: 143 LPFAISKHGL--------VVSGRNTIYCLDIVDIVY--------VAASMHKILHSLGSLK 186
+ ++ G+ V G + + V+ Y + A M +G
Sbjct: 108 MSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVE-RYEPERDEWHLVAPMLTRRIGVG--- 163
Query: 187 FDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEG 246
+A+L+ +YAVGG+DG+ RL+S E Y P +NEW I M + V
Sbjct: 164 -------VAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHN 216
Query: 247 MLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHAS 306
+Y GG + D + V+RY+ + W +APM RS I IYVLGG+
Sbjct: 217 CIYAAGG--YDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGH 274
Query: 307 TENTNRVECYHIAENTWEYKSPMKEKRYRPGIAV 340
T + VECY +TW + M R G+AV
Sbjct: 275 T-FLDSVECYDPDTDTWSEVTRMTSGRSGVGVAV 307
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 1e-27
Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 6/121 (4%)
Query: 273 NQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEK 332
+ + L+PR A + IY GG+ ++ + +E Y+ + TW + ++
Sbjct: 4 HHHHHHSSGLVPRGSHA-PKVGRLIYTAGGY--FRQSLSYLEAYNPSNGTWLRLADLQVP 60
Query: 333 RYRPGIAVIDGKIYVLGGEEGWDG---YHDSIECYDVDNDSWEIMSHLPSARSWLGCVPL 389
R V+ G +Y +GG +++CY+ + W + + R+ +G +
Sbjct: 61 RSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI 120
Query: 390 Q 390
Sbjct: 121 D 121
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 1e-09
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 3/71 (4%)
Query: 319 AENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLP 378
+ + + S R + IY GG +E Y+ N +W ++ L
Sbjct: 2 SSHHHHHHSSGLVPRGSHA-PKVGRLIYTAGGYFR--QSLSYLEAYNPSNGTWLRLADLQ 58
Query: 379 SARSWLGCVPL 389
RS L +
Sbjct: 59 VPRSGLAGCVV 69
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 4e-06
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 96 ITPRTKPRKSAGSI---NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGL 152
+ P R + G I +GG D L SVE + T W ++ + S G+
Sbjct: 246 VAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGV 305
Query: 153 VVS 155
V+
Sbjct: 306 AVT 308
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 267 bits (685), Expect = 7e-88
Identities = 68/309 (22%), Positives = 107/309 (34%), Gaps = 36/309 (11%)
Query: 97 TPRTKPRKSAGSINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSG 156
+ T+PR+ I GG +S F K W + C V
Sbjct: 1 SMGTRPRRKKHD-YRIALFGGSQ----PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWD 55
Query: 157 RNTIYCL-----DIVDIVYV----------AASMHKILHSLGSLKFDFDVSGIAMLDGFV 201
N +Y L + + SL + +G +
Sbjct: 56 -NVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAA----------CAAEGKI 104
Query: 202 YAVGGWD-GSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGD 260
Y GG + G+ L E YD W M S +V G++YV GG++ +
Sbjct: 105 YTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVS 164
Query: 261 G--IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHI 318
G + + Y+P W +L PM+ R + + I+ +GG + + VE Y I
Sbjct: 165 GRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLG-GLDNVEYYDI 223
Query: 319 AENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLP 378
N W+ SPM K A + +YVL G +G G I Y+ + D W S +
Sbjct: 224 KLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQG-VGRLGHILEYNTETDKWVANSKVR 282
Query: 379 SARSWLGCV 387
+ +
Sbjct: 283 AFPVTSCLI 291
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 199 bits (507), Expect = 3e-61
Identities = 49/195 (25%), Positives = 74/195 (37%), Gaps = 10/195 (5%)
Query: 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILE 257
D + GG + S ++P W+ I A V + ++Y+ GG
Sbjct: 12 DYRIALFGG----SQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGG---S 64
Query: 258 DGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYH 317
I+++ YN + W PR A CA + IY GG ECY
Sbjct: 65 QLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYD 124
Query: 318 IAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYH---DSIECYDVDNDSWEIM 374
+W K M +R G+ +G IYV GG G + +S E YD ++W +
Sbjct: 125 TRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTEL 184
Query: 375 SHLPSARSWLGCVPL 389
+ AR G V +
Sbjct: 185 CPMIEARKNHGLVFV 199
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 182 bits (464), Expect = 7e-55
Identities = 56/285 (19%), Positives = 103/285 (36%), Gaps = 46/285 (16%)
Query: 95 HITPRTKPRKSAGSI---NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHG 151
I + R+ A + NV+ +GG ++ ++ + V W + P
Sbjct: 38 DIRCPFEKRRDAACVFWDNVVYILGGSQLFP-IKRMDCYNVVKDSWYSKLGPPTPRDSLA 96
Query: 152 LVVSGRNTIY----------CLDIVDIVY--------VAASMHKILHSLGSLKFDFDVSG 193
+ IY L + + Y SM S G
Sbjct: 97 ACAAE-GKIYTSGGSEVGNSALYLFE-CYDTRTESWHTKPSMLTQRCSHG---------- 144
Query: 194 IAMLDGFVYAVGGWDGS----CRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLY 249
+ +G +Y GG G+ L+S E YDP W+ + PM A + +V + ++
Sbjct: 145 MVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIF 204
Query: 250 VTGGAILEDGDGI-EQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTE 308
GG ++G G + V+ Y+ K+N+W+ ++PM A+ S +YVL G+
Sbjct: 205 AVGG---QNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVG- 260
Query: 309 NTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEG 353
+ Y+ + W S ++ + + + G E
Sbjct: 261 RLGHILEYNTETDKWVANSKVRAFPVTSCLICV---VDTCGANEE 302
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 9e-42
Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 8/154 (5%)
Query: 237 TSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSC 296
T P H+ + + GG+ + + +NPK W D+ R AA D+
Sbjct: 4 TRPRRKKHDYRIALFGGSQPQS------CRYFNPKDYSWTDIRCPFEKRRDAACVFWDNV 57
Query: 297 IYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDG 356
+Y+LGG ++CY++ +++W K R +GKIY GG E +
Sbjct: 58 VYILGGSQLFPIKR--MDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNS 115
Query: 357 YHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQ 390
ECYD +SW + + R G V
Sbjct: 116 ALYLFECYDTRTESWHTKPSMLTQRCSHGMVEAN 149
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 2e-38
Identities = 50/247 (20%), Positives = 85/247 (34%), Gaps = 52/247 (21%)
Query: 88 LPDRRSAHITPRTKPRKSAGSIN-VIIAVGGEDD-KVVLRSVEGFCVKTKVWKTLSCLPF 145
P R + +A + I GG + L E + +T+ W T +
Sbjct: 88 PPTPRDSL---------AACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLT 138
Query: 146 AISKHGLVVSGRNTIY-------------CLDIVDIVY--------VAASMHKILHSLGS 184
HG+V + IY L+ + VY M + + G
Sbjct: 139 QRCSHGMVEAN-GLIYVCGGSLGNNVSGRVLNSCE-VYDPATETWTELCPMIEARKNHG- 195
Query: 185 LKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH 244
+ + ++AVGG +G LD+VE YD NEW + PM + A
Sbjct: 196 ---------LVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV 246
Query: 245 EGMLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGW 303
++YV G G G + + YN + ++W + + + + C+ G
Sbjct: 247 GSIVYVLAG---FQGVGRLGHILEYNTETDKWVANSKVRAFPVTSCLI----CVVDTCGA 299
Query: 304 HASTENT 310
+ T T
Sbjct: 300 NEETLET 306
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 | Back alignment and structure |
|---|
Score = 245 bits (628), Expect = 3e-79
Identities = 71/328 (21%), Positives = 113/328 (34%), Gaps = 51/328 (15%)
Query: 97 TPRTKPRKSAGSINVIIAVGGEDDKVVLRSVEGFCVKT-KVWKTLSCLPFAISKHGLVVS 155
PR ++I+ V + + + + T + +V
Sbjct: 3 YLNDIPRHGMFVKDLILLVNDT-------AAVAYDPMENECYLTALAEQIPRNHSSIVTQ 55
Query: 156 GRNTIYCLDIVDIVYVA----ASMHKILHSLGSLKFDFDVS-----------------GI 194
+ VYV L S F D G+
Sbjct: 56 Q----------NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGL 105
Query: 195 AMLDGFVYAVGGWD--GSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTG 252
+D +Y V G D LDSV YDP +WS ++ + + V V++H GM+Y G
Sbjct: 106 GEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLG 165
Query: 253 GAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNR 312
G +D +V YNPK W+DLAPM PRS + I + GG +
Sbjct: 166 GKT-DDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGL-SAS 223
Query: 313 VECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDG--------YHDSIECY 364
VE + + N WE + ++R + + G +Y +GG + I Y
Sbjct: 224 VEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKY 283
Query: 365 DVDNDSWEIMSHLPSARSWLGCVPLQIH 392
+ D W M S C+ +++
Sbjct: 284 EDDKKEWAGMLKEIRYASGASCLATRLN 311
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 | Back alignment and structure |
|---|
Score = 188 bits (480), Expect = 4e-57
Identities = 58/302 (19%), Positives = 104/302 (34%), Gaps = 55/302 (18%)
Query: 85 FHLLPDRRSAHITPRTKPRKSAGSI---NVIIAVGGED------DKVVLRSVEGFCVKTK 135
+ + + PR + + N + VGG D+ + +
Sbjct: 29 YDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSS 88
Query: 136 VWKTLSCLPFAISKHGLVVSGRNTIY-----------CLDIVDIVY--------VAASMH 176
W L LP A GL + IY LD V Y ++
Sbjct: 89 EWVGLPPLPSARCLFGLGEVD-DKIYVVAGKDLQTEASLDSVL-CYDPVAAKWSEVKNLP 146
Query: 177 KILHSLGSLKFDFDVSGIAMLDGFVYAVGGW-DGSCRLDSVERYDPTKNEWSYIEPMKLA 235
++ +G +Y +GG D + V Y+P K +W + PMK
Sbjct: 147 IKVYGHNV----------ISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTP 196
Query: 236 VTSPAVVAHEGMLYVTGGAILEDGDGI-EQVQRYNPKVNQWQDLAPMLIPRSGAAICALD 294
+ V H+G + + GG DG+ V+ ++ K N+W+ + RS ++ +L
Sbjct: 197 RSMFGVAIHKGKIVIAGG---VTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLA 253
Query: 295 SCIYVLGGWHASTE--------NTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIY 346
+Y +GG+ N + Y + W +KE RY G + + ++
Sbjct: 254 GSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWA--GMLKEIRYASGASCLATRLN 311
Query: 347 VL 348
+
Sbjct: 312 LF 313
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 | Back alignment and structure |
|---|
Score = 209 bits (535), Expect = 3e-65
Identities = 46/205 (22%), Positives = 82/205 (40%), Gaps = 8/205 (3%)
Query: 193 GIAMLDGFVYAVGGWDGS------CRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEG 246
+ + V+ GG + ++D +EW + P+ +
Sbjct: 40 SLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALN 99
Query: 247 MLYVTGGAILEDGD-GIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHA 305
+YV GG ++DG+ ++ V Y+ +W + P+ G + + +YV+GG +
Sbjct: 100 SIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGS 159
Query: 306 STENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYD 365
+ N++ Y + W+ +PM+ R G V DG+I V G G S E Y
Sbjct: 160 DRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTD-TGLTSSAEVYS 218
Query: 366 VDNDSWEIMSHLPSARSWLGCVPLQ 390
+ ++ W P RS L V L
Sbjct: 219 ITDNKWAPFEAFPQERSSLSLVSLV 243
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 | Back alignment and structure |
|---|
Score = 186 bits (475), Expect = 2e-56
Identities = 37/200 (18%), Positives = 73/200 (36%), Gaps = 14/200 (7%)
Query: 197 LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYI-EPMKLAVTSPAVVAHEGMLYVTGGAI 255
L ++ + + YDP NE ++ ++V E ++V GG
Sbjct: 3 LQDLIFMISE-------EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLF 55
Query: 256 LEDGDGIEQ----VQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHAS--TEN 309
+ + + +++ ++W + P+ PR + + IYV+GG
Sbjct: 56 YNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERC 115
Query: 310 TNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDND 369
+ V CY W P+ Y + +YV+GG+ + + YD
Sbjct: 116 LDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKF 175
Query: 370 SWEIMSHLPSARSWLGCVPL 389
W+ ++ + +ARS G
Sbjct: 176 EWKELAPMQTARSLFGATVH 195
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 | Back alignment and structure |
|---|
Score = 180 bits (459), Expect = 6e-54
Identities = 55/303 (18%), Positives = 94/303 (31%), Gaps = 56/303 (18%)
Query: 90 DRRSAHITPRTKPRKSAGSI---NVIIAVGGED------DKVVLRSVEGFCVKTKVWKTL 140
+ P+ + N + GG + + F W +
Sbjct: 23 NECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM 82
Query: 141 SCLPFAISKHGLVVSGRNTIY------------CLDIVDIVY--------VAASMHKILH 180
LP GL + N+IY CLD V Y + + +++
Sbjct: 83 PPLPSPRCLFGLGEAL-NSIYVVGGREIKDGERCLDSVM-CYDRLSFKWGESDPLPYVVY 140
Query: 181 SLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCR-LDSVERYDPTKNEWSYIEPMKLAVTSP 239
VY +GG + L+ + YDP K EW + PM+ A +
Sbjct: 141 GHTV----------LSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLF 190
Query: 240 AVVAHEGMLYVTGGAILEDGDGI-EQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIY 298
H+G + V G G+ + Y+ N+W RS ++ +L +Y
Sbjct: 191 GATVHDGRIIVAAG---VTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLY 247
Query: 299 VLGGW--------HASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGG 350
+GG+ N + Y+ E WE Y G + ++ VL
Sbjct: 248 AIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVLREI--AYAAGATFLPVRLNVLRL 305
Query: 351 EEG 353
+
Sbjct: 306 TKM 308
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 3e-40
Identities = 49/244 (20%), Positives = 78/244 (31%), Gaps = 52/244 (21%)
Query: 88 LPDRRSAHITPRTKPRKSAGSIN-VIIAVGG---EDDKVVLRSVEGFCVKTKVWKTLSCL 143
LP R G I VGG +D + L SV + + W L
Sbjct: 85 LPSPRCLF---------GLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPL 135
Query: 144 PFAISKHGLVVSGRNTIY----------CLDIVDIVY--------VAASMHKILHSLGSL 185
P+ + H ++ + +Y CL+ + VY A M G
Sbjct: 136 PYVVYGHTVLSHM-DLVYVIGGKGSDRKCLNKMC-VYDPKKFEWKELAPMQTARSLFG-- 191
Query: 186 KFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHE 245
+ DG + G + S E Y T N+W+ E +S ++V+
Sbjct: 192 --------ATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLV 243
Query: 246 GMLYVTGG-------AILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIY 298
G LY GG + + + RYN + +W+ + A L +
Sbjct: 244 GTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVLRE--IAYAAGATFLPVRLN 301
Query: 299 VLGG 302
VL
Sbjct: 302 VLRL 305
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 6e-18
Identities = 25/172 (14%), Positives = 39/172 (22%), Gaps = 59/172 (34%)
Query: 102 PRKSAGSI---NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRN 158
R G+ II G D + S E + + W P S LV
Sbjct: 186 ARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVS---- 241
Query: 159 TIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDG--------- 209
L G +YA+GG+
Sbjct: 242 --------------------------------------LVGTLYAIGGFATLETESGELV 263
Query: 210 SCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDG 261
L+ + RY+ + +W + + L V
Sbjct: 264 PTELNDIWRYNEEEKKWEGVLREIAYAAGATFLP--VRLNVLRLT---KMAE 310
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 6e-44
Identities = 39/335 (11%), Positives = 80/335 (23%), Gaps = 73/335 (21%)
Query: 102 PRKSAGSI---NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRN 158
P KS + + G + K K W L+ P
Sbjct: 9 PFKSGTGAIDNDTVYIGLGSAGTAWYKLD--TQAKDKKWTALAAFPGGPRDQATSAFIDG 66
Query: 159 TIYCL-----------DIVDIVY-----------VAASMHKILHSLGSLKFDFDVSGIAM 196
+Y + + V+ + + + +
Sbjct: 67 NLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAG----------HVTFV 116
Query: 197 LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAIL 256
+G Y GG + + E + + + I+ +
Sbjct: 117 HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKA--------------- 161
Query: 257 EDGDGIEQVQRYNPKVNQWQDLAPM-LIPRSGAAICALDSCIYVLGGWHASTENTNRVEC 315
ED + + ++P QW +GAA+ +++ G T+ V
Sbjct: 162 EDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFE 221
Query: 316 YHIAE--NTWEYKSPMKEKRYRPGI--AVIDGKIYVLGGEEGWDG--------------- 356
W +P+ G + + + GG
Sbjct: 222 LDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGL 281
Query: 357 -YHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQ 390
S + + N W+ L R++ +P
Sbjct: 282 KKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWN 316
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 2e-27
Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 11/161 (6%)
Query: 231 PMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPM-LIPRSGAA 289
+ S +Y+ G G ++ K +W LA PR A
Sbjct: 5 ETPVPFKSGTGAIDNDTVYIGLG---SAGTAWYKL-DTQAKDKKWTALAAFPGGPRDQAT 60
Query: 290 ICALDSCIYVLGGWHASTEN----TNRVECYHIAENTW-EYKSPMKEKRYRPGIAVIDGK 344
+D +YV GG ++E N V Y+ N+W + S V +GK
Sbjct: 61 SAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGK 120
Query: 345 IYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLG 385
YV GG + ++ E + + + +
Sbjct: 121 AYVTGGVNQ-NIFNGYFEDLNEAGKDSTAIDKINAHYFDKK 160
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 97.7 bits (243), Expect = 9e-23
Identities = 27/261 (10%), Positives = 54/261 (20%), Gaps = 41/261 (15%)
Query: 87 LLPDRRSAHITPRTKPRKSAGSIN-VIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPF 145
P + H N GG + + E K + +
Sbjct: 104 HAPMGMAGH---------VTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINA 154
Query: 146 AISKHGLVVSG-RNTIYCLDIV-DIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYA 203
+ D A + + + +
Sbjct: 155 HYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAG---------AAVVNKGDKTWL 205
Query: 204 VGGWDGS-CRLDSVERYDPTKNEWSYIE----PMKLAVTSPAVVAHEGMLYVTGGAILED 258
+ G R D+V D T N + + V L GGA +
Sbjct: 206 INGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKG 265
Query: 259 GDG---------------IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGW 303
+ +W + R+ ++ + ++GG
Sbjct: 266 SRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGE 325
Query: 304 HASTENTNRVECYHIAENTWE 324
A + + +N
Sbjct: 326 TAGGKAVTDSVLITVKDNKVT 346
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 85.8 bits (212), Expect = 1e-18
Identities = 23/121 (19%), Positives = 38/121 (31%), Gaps = 13/121 (10%)
Query: 278 LAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVEC--YHIAENTWEYKSPM-KEKRY 334
L +P + +Y+ G + W + R
Sbjct: 3 LPETPVPFKSGTGAIDNDTVYIGLG-----SAGTAWYKLDTQAKDKKWTALAAFPGGPRD 57
Query: 335 RPGIAVIDGKIYVLGG----EEGWDGYHDSIECYDVDNDSW-EIMSHLPSARSWLGCVPL 389
+ A IDG +YV GG EG + + Y+ +SW ++MSH P +
Sbjct: 58 QATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVH 117
Query: 390 Q 390
Sbjct: 118 N 118
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656 | Back alignment and structure |
|---|
Score = 95.8 bits (237), Expect = 2e-21
Identities = 40/222 (18%), Positives = 73/222 (32%), Gaps = 30/222 (13%)
Query: 192 SGIAMLDGFVYAVGG-WDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPA----VVAHEG 246
S M DG V+ +GG W G + E Y P+ W+ + K+ A + +
Sbjct: 291 SSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDN 350
Query: 247 MLYVTG---GAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAIC---------ALD 294
++ G G++ + G Y + R A A+
Sbjct: 351 HAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVK 410
Query: 295 SCIYVLGGW-----HASTENTNRVECY--HIAENTWEYKSPMKEKRYRP-GIAVIDGKIY 346
I GG +T N + + + NT + + R + + DG +
Sbjct: 411 GKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTF 470
Query: 347 VLGGEEGWDGYHDS-----IECYDVDNDSWEIMSHLPSARSW 383
+ GG+ + DS E Y + D++ + R +
Sbjct: 471 ITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVY 512
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656 | Back alignment and structure |
|---|
Score = 71.9 bits (175), Expect = 1e-13
Identities = 31/209 (14%), Positives = 59/209 (28%), Gaps = 30/209 (14%)
Query: 187 FDFDVSGIAMLDGFVYAVGGWDGSC-----RLDSVERYDPTKNEWS---------YIEPM 232
D G+ D + G GS Y + + P
Sbjct: 338 LTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPD 397
Query: 233 KLAVTSPAVVAHEGMLYVTGGAILEDG----DGIEQVQRYNPK--VNQWQDLAPMLIPRS 286
+ + A +G + GG+ + P N + R+
Sbjct: 398 AMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFART 457
Query: 287 GAAICAL-DSCIYVLGGWHASTENTNR-----VECYHIAENTWEYKSPMKEKRYRPGIAV 340
L D ++ GG + E Y ++T+ ++P R I++
Sbjct: 458 FHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISL 517
Query: 341 I--DGKIYVLGGEEGWDGY--HDSIECYD 365
+ DG+++ GG D H + +
Sbjct: 518 LLPDGRVFNGGGGLCGDCTTNHFDAQIFT 546
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656 | Back alignment and structure |
|---|
Score = 66.1 bits (160), Expect = 8e-12
Identities = 27/197 (13%), Positives = 53/197 (26%), Gaps = 15/197 (7%)
Query: 196 MLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAI 255
G G S + ++ + + G + VTGG
Sbjct: 204 SSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGG-- 261
Query: 256 LEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVE 314
+ ++ Y+ + W M + R + + D ++ +GG + E
Sbjct: 262 ----NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGE 317
Query: 315 CYHIAENTWEYKSPMKEKRYRP----GIAVIDGKIYVLGGEEGW----DGYHDSIECYDV 366
Y + TW K G+ D ++ G ++G Y
Sbjct: 318 VYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTS 377
Query: 367 DNDSWEIMSHLPSARSW 383
+ + S R
Sbjct: 378 GSGDVKSAGKRQSNRGV 394
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656 | Back alignment and structure |
|---|
Score = 50.0 bits (118), Expect = 9e-07
Identities = 21/144 (14%), Positives = 49/144 (34%), Gaps = 15/144 (10%)
Query: 191 VSGIAMLDGFVYAVGGW------DGSCRLDSVERYDPTKNEWSYIEPMKLAVT--SPAVV 242
+ + + DG + GG + S + + E Y P ++ + P + S +++
Sbjct: 459 HTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLL 518
Query: 243 AHEGMLYVTGGAILEDGDGIEQ-VQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLG 301
+G ++ GG + D Q + P + P+ I + +G
Sbjct: 519 LPDGRVFNGGGGLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPK----ITRTSTQSVKVG 574
Query: 302 GWHASTENTN--RVECYHIAENTW 323
G + +++ + T
Sbjct: 575 GRITISTDSSISKASLIRYGTATH 598
|
| >3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 | Back alignment and structure |
|---|
Score = 84.2 bits (209), Expect = 4e-20
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL------ETIRLPQLSP 56
VL N+ R+ ++CD TL V G F AH VLA S +F+ L ++ LP
Sbjct: 11 VLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGSGGSVVLPAGFA 69
|
| >2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 5e-20
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL------ETIRLPQLSP 56
VL N+ R+ ++CD TL V G F AH VLA S +F+ + ++ LP
Sbjct: 12 VLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGTGGSVVLPAGFA 70
|
| >2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 1e-19
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL-----ETIRLPQLSP 56
VL N+ R+ CD T VDG F AH+ VLAA S YFK+L + + L +
Sbjct: 14 VLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQKDVVHLDISNA 71
|
| >3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 1e-19
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL-----ETIRLPQLSP 56
+L NE R + FCDVT+ V+ KF AH+ +L+ASS YF L + + L +
Sbjct: 18 LLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVAGQVVELSFIRA 75
|
| >1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 2e-19
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL-----ETIRLPQLSP 56
+L N+ R CDV + VD +F AHR VLA +S F++L + L LSP
Sbjct: 15 LLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQHYTLDFLSP 72
|
| >2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 2e-19
Identities = 23/43 (53%), Positives = 28/43 (65%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL 46
+L+G NE R CDV + V+G +FP HR VLAA S YFK L
Sbjct: 12 ILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKL 54
|
| >3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 4e-19
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFK 44
+L NE R +CDV++ V G F AHR VLAASS YF+
Sbjct: 20 ILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFR 60
|
| >2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 4e-19
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFK 44
VL N+ RK + CDVT+ V+G +F AHR VLAA S YF
Sbjct: 16 VLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFH 56
|
| >3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 5e-19
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFK 44
+L G N+ RK + CDVTL V+ +F AHR VLAA S YF
Sbjct: 19 ILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFW 59
|
| >2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 5e-19
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL 46
+L N+ R+ CD T+ + +F AHR VLA+ S YF +
Sbjct: 9 LLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAI 51
|
| >1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 5e-19
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFK 44
VL N R + DV + V +F AH+ VL A S F
Sbjct: 16 VLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFY 56
|
| >2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 8e-19
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFK 44
VL N+ RK + CDVT+ V+G +F AHR VLAA S YF
Sbjct: 23 VLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFH 63
|
| >2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 8e-19
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFK 44
+L + R+ + FCD L +DG + P + +LAA+SPY +
Sbjct: 34 LLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIR 74
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 | Back alignment and structure |
|---|
Score = 87.5 bits (216), Expect = 8e-19
Identities = 35/209 (16%), Positives = 66/209 (31%), Gaps = 27/209 (12%)
Query: 198 DGFVYAVGGWDGSCR-LDSVERYDPTKNEWSYIEPMKLAVTSP-AVVAHEGMLYVTGGAI 255
+ + +GG + L +D EWS I+ + A +G + + GG
Sbjct: 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGV- 509
Query: 256 LEDGDGIEQVQRYNPKVNQWQDLAPM---LIPRSGAAICALD----SCIYVLGGWHASTE 308
+ YN ++D+ P +A D I + GG+ T
Sbjct: 510 ----TEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTT 565
Query: 309 NTNRVECYHIAENTWEYK-------SPMKEKRYRPGIAVI-DGKIYVLGG--EEGWDGYH 358
+++ + +RY I I K+ ++GG G
Sbjct: 566 VSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRT 625
Query: 359 DSIECYDVDNDSW---EIMSHLPSARSWL 384
+SI D +++ I + S +
Sbjct: 626 NSIISLDPLSETLTSIPISRRIWEDHSLM 654
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 | Back alignment and structure |
|---|
Score = 80.2 bits (197), Expect = 2e-16
Identities = 29/218 (13%), Positives = 67/218 (30%), Gaps = 29/218 (13%)
Query: 195 AMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPA--------VVAHEG 246
+ V+ +GG + R++ + + ++ + P ++
Sbjct: 394 DVAGNDVFYMGGSNP-YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNN 452
Query: 247 MLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSCIYVLGGWHA 305
L + GG G+ ++ K +W + + R + C+L D + +LGG
Sbjct: 453 QLLLIGG-RKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTE 511
Query: 306 STENTNRVECYHIAENTWEYKSPMKEKRYRPG------IAVIDGKIYVLGGEEGWDGYH- 358
+ Y++ E ++ +P E + + +LGG
Sbjct: 512 G----PAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVS 567
Query: 359 DSIECYDVDNDSWE-------IMSHLPSARSWLGCVPL 389
D + D ++ + H R +
Sbjct: 568 DKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYI 605
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 | Back alignment and structure |
|---|
Score = 68.6 bits (167), Expect = 1e-12
Identities = 33/266 (12%), Positives = 71/266 (26%), Gaps = 72/266 (27%)
Query: 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVY 170
+++ G + L F +KT+ W + L +H
Sbjct: 454 LLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLP-------------- 499
Query: 171 VAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIE 230
DG V +GG ++ Y+ T+ + +
Sbjct: 500 ---------------------------DGNVLILGGVTEG---PAMLLYNVTEEIFKDVT 529
Query: 231 PMKLAVTSPAVVAHEGMLY--------VTGGAILEDGDGIEQVQRYNPKVNQWQD----- 277
P + G+ + + GG ++ ++ + +
Sbjct: 530 PK--DEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVI 587
Query: 278 --LAPMLIPRSGAAICAL-DSCIYVLGGW--HASTENTNRVECYHIAENTWEYKSPMKEK 332
L L R G+ I + + ++GG + TN + T +
Sbjct: 588 KKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPISRRI 647
Query: 333 RYRPG--------IAVIDGKIYVLGG 350
++ G I+++GG
Sbjct: 648 WEDHSLMLAGFSLVSTSMGTIHIIGG 673
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 | Back alignment and structure |
|---|
Score = 60.5 bits (146), Expect = 5e-10
Identities = 22/193 (11%), Positives = 52/193 (26%), Gaps = 14/193 (7%)
Query: 201 VYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGD 260
V + D + + + ++ A +
Sbjct: 304 VNVGDMFQLWESADEATKK--ELLKVEPFDELEEFHLFCHHYVLCHATNYKEFAFTQGFL 361
Query: 261 GIEQVQRYNPKVNQWQDLAPMLIP--RSGAAICALDSCIYVLGGWHASTENTNRVECYHI 318
+ N V++ L P R + + ++ +GG + N + I
Sbjct: 362 FDRSISEINLTVDEDYQLLECECPINRKFGDVDVAGNDVFYMGGSNPYR--VNEILQLSI 419
Query: 319 AENTWEYK------SPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDS 370
+ + K S + R I + ++ ++GG + +D+
Sbjct: 420 HYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTRE 479
Query: 371 WEIMSHLPSARSW 383
W ++ L R
Sbjct: 480 WSMIKSLSHTRFR 492
|
| >3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 9e-18
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 1 MKMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFK 44
+L + R+ + FCD L +DG + P + +LAA+SPY +
Sbjct: 15 AARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIR 58
|
| >3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 4e-05
Identities = 3/34 (8%), Positives = 13/34 (38%)
Query: 44 KVLETIRLPQLSPYFLHDCVEQCAIIKNNPQCAQ 77
V+ + + L +L + + +++ +
Sbjct: 218 DVMSALWVSGLDSSYLREQMLNEPLVREIVKECS 251
|
| >3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 1e-17
Identities = 14/45 (31%), Positives = 18/45 (40%)
Query: 9 NEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVLETIRLPQ 53
AR CD + V +FPAH +VLA S L +
Sbjct: 22 LAARLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGRRGQWALGE 66
|
| >4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 7e-16
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFK 44
+ +N+ F D LCV G +F AH+ +LAA SP F
Sbjct: 12 LADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFS 52
|
| >3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 9e-16
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 4 VLTGFNEARKNNEFCDVTLC---VDGSKFPAHRVVLAASSPYFK 44
+ NE R+ FCD+TLC G +F AHR VLAA++ YF
Sbjct: 19 LSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFT 62
|
| >3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 2e-12
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 44 KVLETIRLPQLSPYFLHDCVEQCAIIKNNPQCAQLVEEAKLFHLLPDRRSAHITPRT 100
++ + +RL Q+ P +L V+ ++ NN C +LV +A H L I T
Sbjct: 226 ELFKLLRLSQMKPTYLTRHVKPERLVANNEVCVKLVADAVERHALRAEN---IQSGT 279
|
| >3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 3e-14
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFK 44
+ +N+ F D LCV G +F AH+ +LAA SP F
Sbjct: 21 LADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFS 61
|
| >2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 3e-13
Identities = 12/37 (32%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
Query: 12 RKNNEFCDVTLCV----DGSKFPAHRVVLAASSPYFK 44
N DV V PAH+ VLA S F
Sbjct: 3 FNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFY 39
|
| >3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 3e-10
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFK 44
+ +N+ F D LCV G +F AH+ +LAA SP F
Sbjct: 161 LADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFS 201
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Length = 330 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 6e-04
Identities = 33/178 (18%), Positives = 65/178 (36%), Gaps = 48/178 (26%)
Query: 113 IAVGGEDDKVVLRSVEGFCVKTKVWKT-----LSCLPFAISKHGLVVSGRNTIYCLD--- 164
I +G + + + +G + W + C P +I K G + G + +Y ++
Sbjct: 33 IYLGSSNKNLYAINTDG----SVKWFFKSGEIIECRP-SIGKDGTIYFGSDKVYAINPDG 87
Query: 165 -----------------IVD-IVYVAASMHKI--LHSLGSLKFDFDVSG------IAMLD 198
I + I+YV + + +++ G+ K+ F I D
Sbjct: 88 TEKWRFDTKKAIVSDFTIFEDILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSED 147
Query: 199 GFVYAVGGWDGSCRLDSVERYDPT-KNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAI 255
G +Y VG D + +P +W + A+TS A + +G +Y +
Sbjct: 148 GTIY-VGSNDN-----YLYAINPDGTEKWRF--KTNDAITSAASIGKDGTIYFGSDKV 197
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 400 | |||
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 100.0 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 100.0 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 100.0 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 100.0 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 100.0 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 100.0 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 100.0 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 100.0 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 100.0 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 100.0 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 100.0 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 100.0 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 100.0 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 100.0 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 100.0 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 100.0 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 100.0 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 100.0 | |
| 3m5b_A | 119 | Zinc finger and BTB domain-containing protein 32; | 99.69 | |
| 3b84_A | 119 | Zinc finger and BTB domain-containing protein 48; | 99.67 | |
| 2yy9_A | 135 | Zinc finger and BTB domain-containing protein 48; | 99.66 | |
| 3ohu_A | 125 | Transcription regulator protein BACH2; BTB/POZ dom | 99.66 | |
| 3fkc_A | 116 | Transcriptional regulator kaiso; zinc finger and B | 99.66 | |
| 2ihc_A | 124 | Transcription regulator protein BACH1; BRIC-A-BRAC | 99.65 | |
| 2q81_A | 119 | MIZ-1 protein; BTB/POZ domain, transcription; HET: | 99.65 | |
| 1buo_A | 121 | POZ domain, protein (promyelocytic leukemia zinc f | 99.65 | |
| 3ga1_A | 129 | Nucleus accumbens-associated protein 1; BTB/POZ do | 99.64 | |
| 2if5_A | 120 | Zinc finger and BTB domain-containing protein 7A; | 99.63 | |
| 2vpk_A | 116 | Myoneurin; transcription regulation, transcription | 99.63 | |
| 2z8h_A | 138 | Transcription regulator protein BACH1; BTB, POZ, d | 99.63 | |
| 2ppi_A | 144 | Gigaxonin; BTB domain, protein degradation, struct | 99.62 | |
| 1r29_A | 127 | B-cell lymphoma 6 protein; BTB domain, transcripti | 99.62 | |
| 4eoz_A | 145 | Speckle-type POZ protein; E3 ubiquitin ligase, nuc | 99.48 | |
| 3i3n_A | 279 | Kelch-like protein 11; structural genomics, BTB, K | 99.47 | |
| 3hve_A | 256 | Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis | 99.47 | |
| 3htm_A | 172 | Speckle-type POZ protein; BTB, SPOP, ubiquitin, li | 99.46 | |
| 2vkp_A | 109 | BTB/POZ domain-containing protein 6; protein-bindi | 99.46 | |
| 3hqi_A | 312 | Speckle-type POZ protein; SPOP, ubiquitin, puckere | 99.32 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.86 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.71 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.67 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.65 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.63 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.55 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 98.5 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.47 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.42 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.38 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.33 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.31 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.22 | |
| 4ajy_C | 97 | Transcription elongation factor B polypeptide 1; E | 98.16 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.16 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.15 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.15 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 98.14 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.14 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 98.12 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 98.11 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 98.1 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 98.08 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.05 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.03 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 97.98 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 97.95 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 97.93 | |
| 3i3n_A | 279 | Kelch-like protein 11; structural genomics, BTB, K | 97.92 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 97.9 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 97.81 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.8 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 97.8 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.77 | |
| 2ast_A | 159 | S-phase kinase-associated protein 1A; SCF-substrat | 97.75 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 97.72 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.71 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 97.71 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 97.7 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.69 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 97.69 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 97.68 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 97.65 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.64 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.63 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 97.59 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 97.58 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 97.57 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 97.55 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 97.54 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 97.51 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 97.51 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 97.5 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 97.48 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 97.47 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 97.46 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 97.46 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 97.44 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 97.42 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 97.36 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 97.36 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.35 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.34 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 97.34 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 97.34 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 97.33 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 97.32 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 97.29 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.29 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.28 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 97.28 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.27 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.25 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 97.25 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 97.23 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.21 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 97.2 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.2 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.18 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 97.15 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 97.15 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 97.12 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 97.09 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 97.08 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 97.05 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 97.04 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 97.03 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 97.03 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 97.03 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 97.02 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 97.02 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 96.99 | |
| 3hve_A | 256 | Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis | 96.99 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 96.99 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 96.98 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 96.97 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 96.97 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 96.94 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 96.94 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 96.93 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 96.92 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 96.92 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 96.9 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 96.9 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 96.89 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 96.88 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 96.84 | |
| 1pex_A | 207 | Collagenase-3, MMP-13; C-terminal hemopexin-like d | 96.84 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 96.81 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 96.8 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 96.79 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 96.78 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 96.78 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 96.75 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 96.75 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 96.75 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 96.74 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 96.71 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 96.68 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 96.68 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 96.68 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 96.65 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 96.64 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 96.63 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 96.62 | |
| 1fs1_B | 141 | SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le | 96.62 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 96.6 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 96.59 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 96.58 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 96.57 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 96.54 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 96.52 | |
| 1itv_A | 195 | MMP9; adaptive molecular recognition, beta propell | 96.51 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 96.51 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 96.5 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 96.48 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 96.48 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 96.47 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 96.47 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 96.45 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 96.45 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 96.42 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 96.4 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 96.38 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 96.37 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 96.37 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 96.37 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.35 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 96.34 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 96.31 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.31 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 96.29 | |
| 2p1m_A | 160 | SKP1-like protein 1A; F-BOX, leucine rich repeat, | 96.24 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 96.24 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 96.24 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 96.23 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 96.22 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 96.18 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 96.17 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 96.16 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 96.13 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 96.08 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 96.05 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 96.03 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 96.03 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 95.99 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 95.95 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 95.94 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 95.94 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 95.93 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 95.91 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 95.9 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 95.89 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 95.88 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 95.88 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 95.86 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 95.86 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 95.85 | |
| 1su3_A | 450 | Interstitial collagenase; prodomain, hemopexin dom | 95.8 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 95.76 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 95.69 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 95.67 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 95.66 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 95.64 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 95.6 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 95.57 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 95.56 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 95.56 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 95.54 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 95.53 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 95.52 | |
| 1gen_A | 218 | Gelatinase A; hydrolase, hemopexin domain, metallo | 95.51 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 95.5 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 95.49 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 95.42 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 95.39 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 95.39 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 95.35 | |
| 1qhu_A | 460 | Protein (hemopexin); beta propeller, HAEM binding | 95.34 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 95.34 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 95.32 | |
| 3oyo_A | 225 | Hemopexin fold protein CP4; seeds, plant protein; | 95.31 | |
| 3ba0_A | 365 | Macrophage metalloelastase; FULL-length MMP-12, he | 95.3 | |
| 3c7x_A | 196 | Matrix metalloproteinase-14; membrane protein inte | 95.29 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 95.28 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 95.24 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 95.24 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 95.23 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 95.12 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 95.08 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 95.06 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 95.02 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 94.95 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 94.9 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 94.84 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 94.8 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 94.8 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 94.78 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 94.74 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 94.61 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 94.6 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 94.58 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 94.37 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 94.3 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 94.29 | |
| 3lp9_A | 227 | LS-24; SEED albumin, plant protein; HET: SPM; 2.20 | 94.19 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 94.17 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 94.02 | |
| 1qhu_A | 460 | Protein (hemopexin); beta propeller, HAEM binding | 94.0 | |
| 1pex_A | 207 | Collagenase-3, MMP-13; C-terminal hemopexin-like d | 93.75 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 93.67 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 93.66 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 93.62 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 93.46 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 93.24 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 93.2 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 93.16 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 93.12 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 93.0 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 92.91 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 92.77 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 92.75 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 92.74 | |
| 1hv2_A | 99 | Elongin C, ELC1; protein-peptide complex, signalin | 92.74 | |
| 2fnj_C | 96 | Transcription elongation factor B polypeptide 1; b | 92.73 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 92.71 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 92.67 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 92.5 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 92.48 | |
| 1su3_A | 450 | Interstitial collagenase; prodomain, hemopexin dom | 92.38 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 92.29 | |
| 3oyo_A | 225 | Hemopexin fold protein CP4; seeds, plant protein; | 92.17 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 92.1 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 92.02 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 91.97 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 91.9 | |
| 1itv_A | 195 | MMP9; adaptive molecular recognition, beta propell | 91.76 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 91.31 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 90.98 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 90.97 | |
| 3lp9_A | 227 | LS-24; SEED albumin, plant protein; HET: SPM; 2.20 | 90.87 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 90.82 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 90.82 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 90.75 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 90.6 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 90.53 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 90.43 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 90.42 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 90.38 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 90.24 | |
| 2cn3_A | 737 | Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc | 90.22 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 89.88 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 89.69 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 89.37 | |
| 1sqj_A | 789 | OXG-RCBH, oligoxyloglucan reducing-END-specific ce | 89.33 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 88.73 | |
| 1gen_A | 218 | Gelatinase A; hydrolase, hemopexin domain, metallo | 87.8 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 87.74 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 87.64 | |
| 1hxn_A | 219 | Hemopexin, HPX; heme, binding protein; 1.80A {Oryc | 87.6 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 86.98 | |
| 2cn3_A | 737 | Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc | 86.78 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 86.59 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 86.5 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 85.83 | |
| 1ck7_A | 631 | Protein (gelatinase A); hydrolase (metalloprotease | 85.8 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 85.47 | |
| 1hxn_A | 219 | Hemopexin, HPX; heme, binding protein; 1.80A {Oryc | 85.12 | |
| 3c7x_A | 196 | Matrix metalloproteinase-14; membrane protein inte | 84.61 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 84.18 | |
| 3a0f_A | 763 | Xyloglucanase; beta-propeller, hydrolase; 2.50A {G | 83.53 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 82.24 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 82.1 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 82.07 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 80.78 |
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-52 Score=378.99 Aligned_cols=288 Identities=30% Similarity=0.535 Sum_probs=256.9
Q ss_pred CCcCcCCCCCCCcEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEE------eecCEEEE
Q psy2979 98 PRTKPRKSAGSINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCL------DIVDIVYV 171 (400)
Q Consensus 98 ~~~~~r~~~~~~~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~------~~~~~~~~ 171 (400)
.+.+||....+.+.++++||.+. ...+++++||+.+++|..++.+|.+|..|+++++++. ||++ ...++++.
T Consensus 4 ~~~~~r~~~~~~~~i~v~GG~~~-~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~ 81 (302)
T 2xn4_A 4 VRTRLRTPMNLPKLMVVVGGQAP-KAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGL-VFAVGGFNGSLRVRTVDS 81 (302)
T ss_dssp -----------CEEEEEECCBSS-SBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTE-EEEESCBCSSSBCCCEEE
T ss_pred CcccCCcccCCCCEEEEECCCCC-CCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCE-EEEEeCcCCCccccceEE
Confidence 34567877767789999999863 5678899999999999999999999999999999999 9999 34578999
Q ss_pred EECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEE
Q psy2979 172 AASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVT 251 (400)
Q Consensus 172 yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~ 251 (400)
||+.+++|+.+++||.+|..++++.++++||++||.++....+++++||+.+++|+.++++|.+|..|++++++++||++
T Consensus 82 ~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~ 161 (302)
T 2xn4_A 82 YDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAV 161 (302)
T ss_dssp EETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEE
T ss_pred ECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEE
Confidence 99999999999999999999999999999999999987777889999999999999999999999999999999999999
Q ss_pred cCccccCCCC---cceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccC
Q psy2979 252 GGAILEDGDG---IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSP 328 (400)
Q Consensus 252 GG~~~~~~~~---~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 328 (400)
||. ++.. .+++++||+.+++|+.++++|.+|..|++++++++||++||.+.... .+++++||+.+++|+.+++
T Consensus 162 GG~---~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~yd~~~~~W~~~~~ 237 (302)
T 2xn4_A 162 GGY---DVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLV-RKSVEVYDPTTNAWRQVAD 237 (302)
T ss_dssp CCE---ETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSB-CCCEEEEETTTTEEEEECC
T ss_pred eCC---CCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCcc-cceEEEEeCCCCCEeeCCC
Confidence 998 4432 77899999999999999999999999999999999999999877655 7899999999999999999
Q ss_pred CcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEec-CCCCCCCceeeEEEccc
Q psy2979 329 MKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMS-HLPSARSWLGCVPLQIH 392 (400)
Q Consensus 329 ~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~r~~~~~~~~~~~ 392 (400)
+|.+|..+++++++++||++||. +.....+++++||+++++|+.++ .||.+|..|++++++++
T Consensus 238 ~~~~r~~~~~~~~~~~i~v~GG~-~~~~~~~~v~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~ 301 (302)
T 2xn4_A 238 MNMCRRNAGVCAVNGLLYVVGGD-DGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDKR 301 (302)
T ss_dssp CSSCCBSCEEEEETTEEEEECCB-CSSSBCCCEEEEETTTTEEEECSSCCSSCCBSCEEEEEEC-
T ss_pred CCCccccCeEEEECCEEEEECCc-CCCcccccEEEEcCCCCeEEECCcccCcccccceEEEeccc
Confidence 99999999999999999999998 66566789999999999999997 89999999999999875
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-51 Score=370.88 Aligned_cols=279 Identities=32% Similarity=0.595 Sum_probs=257.9
Q ss_pred CCCCCCcEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEE--e--------ecCEEEEEE
Q psy2979 104 KSAGSINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCL--D--------IVDIVYVAA 173 (400)
Q Consensus 104 ~~~~~~~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~--~--------~~~~~~~yd 173 (400)
.+....+.|+++||. .....++++.||+.+++|..++++|.+|..|+++++++. ||++ . ..+.++.||
T Consensus 19 ~~~~~~~~i~v~GG~-~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~~~~~~d 96 (308)
T 1zgk_A 19 HAPKVGRLIYTAGGY-FRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGL-LYAVGGRNNSPDGNTDSSALDCYN 96 (308)
T ss_dssp --CCCCCCEEEECCB-SSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTE-EEEECCEEEETTEEEECCCEEEEE
T ss_pred cccCCCCEEEEEeCc-CCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCE-EEEECCCcCCCCCCeecceEEEEC
Confidence 444456899999998 467788999999999999999999999999999999999 9999 1 246799999
Q ss_pred CCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcC
Q psy2979 174 SMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGG 253 (400)
Q Consensus 174 ~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG 253 (400)
+.+++|+.+++||.+|..++++.++++||++||.++....+++++||+.+++|+.++++|.+|..|++++++++||++||
T Consensus 97 ~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG 176 (308)
T 1zgk_A 97 PMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGG 176 (308)
T ss_dssp TTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECC
T ss_pred CCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeC
Confidence 99999999999999999999999999999999998777788999999999999999999999999999999999999999
Q ss_pred ccccCCCC-cceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCc
Q psy2979 254 AILEDGDG-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEK 332 (400)
Q Consensus 254 ~~~~~~~~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~ 332 (400)
. ++.. .+++++||+.+++|+.++++|.+|..|++++++++||++||.+.... .+++++||+.+++|+.++++|.+
T Consensus 177 ~---~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~v~~yd~~~~~W~~~~~~p~~ 252 (308)
T 1zgk_A 177 F---DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQ-LNSVERYDVETETWTFVAPMKHR 252 (308)
T ss_dssp B---CSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSB-CCCEEEEETTTTEEEECCCCSSC
T ss_pred C---CCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCCCCc-cceEEEEeCCCCcEEECCCCCCC
Confidence 8 6555 78999999999999999999999999999999999999999887665 78999999999999999999999
Q ss_pred cCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEE
Q psy2979 333 RYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPL 389 (400)
Q Consensus 333 ~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 389 (400)
|..+++++++++||++||. +.....+++++||+++++|+.++.||.+|..|++|++
T Consensus 253 r~~~~~~~~~~~i~v~GG~-~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~l 308 (308)
T 1zgk_A 253 RSALGITVHQGRIYVLGGY-DGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAVT 308 (308)
T ss_dssp CBSCEEEEETTEEEEECCB-CSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEC
T ss_pred ccceEEEEECCEEEEEcCc-CCCcccceEEEEcCCCCEEeecCCCCCCcccceeEeC
Confidence 9999999999999999998 6666788999999999999999999999999999975
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-51 Score=371.83 Aligned_cols=285 Identities=23% Similarity=0.332 Sum_probs=256.3
Q ss_pred cCcCCCCCCCcEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEE-----eecCEEEEEEC
Q psy2979 100 TKPRKSAGSINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCL-----DIVDIVYVAAS 174 (400)
Q Consensus 100 ~~~r~~~~~~~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~-----~~~~~~~~yd~ 174 (400)
.+||.+.. +.++++||.+. .++++.||+.+++|..++++|.+|..|+++++++. ||++ ...++++.||+
T Consensus 4 ~~pr~~~~--~~l~~~GG~~~---~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~d~ 77 (306)
T 3ii7_A 4 TRPRRKKH--DYRIALFGGSQ---PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNV-VYILGGSQLFPIKRMDCYNV 77 (306)
T ss_dssp ------CC--CEEEEEECCSS---TTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTE-EEEECCBSSSBCCEEEEEET
T ss_pred ccCCcccc--ceEEEEeCCCC---CceEEEecCCCCCEecCCCCCcccceeEEEEECCE-EEEEeCCCCCCcceEEEEeC
Confidence 34665554 89999999764 78999999999999999999999999999999999 9999 35678999999
Q ss_pred CCCCeEEccCCCCcceeeeEEEECCEEEEEcccC-CCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcC
Q psy2979 175 MHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWD-GSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGG 253 (400)
Q Consensus 175 ~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG 253 (400)
.+++|..++++|.+|..++++.++++||++||.+ +....+++++||+.+++|+.++++|.+|..|+++.++++||++||
T Consensus 78 ~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG 157 (306)
T 3ii7_A 78 VKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGG 157 (306)
T ss_dssp TTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECC
T ss_pred CCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECC
Confidence 9999999999999999999999999999999987 556788999999999999999999999999999999999999999
Q ss_pred ccccCCC-C-cceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcC
Q psy2979 254 AILEDGD-G-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKE 331 (400)
Q Consensus 254 ~~~~~~~-~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 331 (400)
....... . .+++++||+.+++|+.++++|.+|..|+++.++++||++||.+.... .+++++||+.+++|+.++++|.
T Consensus 158 ~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~-~~~~~~yd~~~~~W~~~~~~p~ 236 (306)
T 3ii7_A 158 SLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGG-LDNVEYYDIKLNEWKMVSPMPW 236 (306)
T ss_dssp EESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEE-BCCEEEEETTTTEEEECCCCSC
T ss_pred CCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCC-CceEEEeeCCCCcEEECCCCCC
Confidence 8321111 1 68899999999999999999999999999999999999999877655 7899999999999999999999
Q ss_pred ccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEccc
Q psy2979 332 KRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQIH 392 (400)
Q Consensus 332 ~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~ 392 (400)
+|..+++++++++|||+||. +.....+++++||+++++|+.++.||.+|..|+++++.+.
T Consensus 237 ~r~~~~~~~~~~~i~v~GG~-~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~ 296 (306)
T 3ii7_A 237 KGVTVKCAAVGSIVYVLAGF-QGVGRLGHILEYNTETDKWVANSKVRAFPVTSCLICVVDT 296 (306)
T ss_dssp CBSCCEEEEETTEEEEEECB-CSSSBCCEEEEEETTTTEEEEEEEEECCSCTTCEEEEEEC
T ss_pred CccceeEEEECCEEEEEeCc-CCCeeeeeEEEEcCCCCeEEeCCCcccccceeEEEEECCc
Confidence 99999999999999999998 6666788999999999999999999999999999998764
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-51 Score=371.68 Aligned_cols=288 Identities=30% Similarity=0.564 Sum_probs=258.8
Q ss_pred CCCCcCcCCCCCCCcEEEEEec-cCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEE------eecCE
Q psy2979 96 ITPRTKPRKSAGSINVIIAVGG-EDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCL------DIVDI 168 (400)
Q Consensus 96 ~~~~~~~r~~~~~~~~i~~~gg-~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~------~~~~~ 168 (400)
++.+.+||.. ..+.++++|| .+.....++++.||+.+++|..++.+|.+|..|+++..++. ||++ ...+.
T Consensus 3 ~~~~~~pr~~--~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~-l~v~GG~~~~~~~~~ 79 (301)
T 2vpj_A 3 QGPRTRARLG--ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDR-IYVIGGYDGRSRLSS 79 (301)
T ss_dssp ------------CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTE-EEEECCBCSSCBCCC
T ss_pred CCcccccccc--CCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCE-EEEEcCCCCCccCce
Confidence 3445667744 4589999999 55567788999999999999999999999999999999999 9999 34578
Q ss_pred EEEEECCCCC---eEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeC
Q psy2979 169 VYVAASMHKI---LHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHE 245 (400)
Q Consensus 169 ~~~yd~~~~~---w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~ 245 (400)
++.||+.+++ |+.++++|.+|..++++.++++||++||..+....+++++||+.+++|+.++++|.+|..|++++++
T Consensus 80 ~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~ 159 (301)
T 2vpj_A 80 VECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVAS 159 (301)
T ss_dssp EEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEET
T ss_pred EEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEEC
Confidence 9999999999 9999999999999999999999999999987777889999999999999999999999999999999
Q ss_pred CEEEEEcCccccCCCC-cceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEE
Q psy2979 246 GMLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWE 324 (400)
Q Consensus 246 ~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 324 (400)
++||++||. ++.. .+++++||+.+++|+.++++|.+|..|+++.++++||++||.+.... .+++++||+.+++|+
T Consensus 160 ~~iyv~GG~---~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~-~~~v~~yd~~~~~W~ 235 (301)
T 2vpj_A 160 GVIYCLGGY---DGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAH-LSSVEAYNIRTDSWT 235 (301)
T ss_dssp TEEEEECCB---CSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSB-CCCEEEEETTTTEEE
T ss_pred CEEEEECCC---CCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcc-cceEEEEeCCCCcEE
Confidence 999999998 6655 78999999999999999999999999999999999999999887665 789999999999999
Q ss_pred EccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEcc
Q psy2979 325 YKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQI 391 (400)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 391 (400)
.++++|.+|..+++++++++||++||. +.....+++++||+++++|+.++.||.+|..|+++++++
T Consensus 236 ~~~~~p~~r~~~~~~~~~~~i~v~GG~-~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 301 (301)
T 2vpj_A 236 TVTSMTTPRCYVGATVLRGRLYAIAGY-DGNSLLSSIECYDPIIDSWEVVTSMGTQRCDAGVCVLRE 301 (301)
T ss_dssp EECCCSSCCBSCEEEEETTEEEEECCB-CSSSBEEEEEEEETTTTEEEEEEEEEEEEESCEEEEEEC
T ss_pred ECCCCCCcccceeEEEECCEEEEEcCc-CCCcccccEEEEcCCCCeEEEcCCCCcccccceEEEeCC
Confidence 999999999999999999999999998 655567899999999999999999999999999999863
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-49 Score=358.91 Aligned_cols=277 Identities=21% Similarity=0.312 Sum_probs=247.1
Q ss_pred CCcEEEEEeccCCCcccceEEEEEcCCCceEEccCC--cccceeeeEEEECCeEEEEEee------------cCEEEEEE
Q psy2979 108 SINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCL--PFAISKHGLVVSGRNTIYCLDI------------VDIVYVAA 173 (400)
Q Consensus 108 ~~~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~--~~~~~~~~~~~~~~~~iyv~~~------------~~~~~~yd 173 (400)
+++.++++|| ++++.||+.+++|.. +++ |.+|..|++++.++. ||++.. .+.++.||
T Consensus 3 ~~~~l~~~GG-------~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~d 73 (315)
T 4asc_A 3 LQDLIFMISE-------EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQ-VFVAGGLFYNEDNKEDPMSAYFLQFD 73 (315)
T ss_dssp CEEEEEEEET-------TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCC-EEEEEEEEECSSCSSSCEEEEEEEEE
T ss_pred cceEEEEEcC-------CceEEECCCCCeEec-CCCCCCCCccceEEEEECCE-EEEEcCcccCCCCCccccccceEEec
Confidence 3578999999 579999999999987 655 458999999999999 999922 23489999
Q ss_pred CCCCCeEEccCCCCcceeeeEEEECCEEEEEcccC---CCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEE
Q psy2979 174 SMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWD---GSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYV 250 (400)
Q Consensus 174 ~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~---~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv 250 (400)
+.+++|+.++++|.+|..|+++.++++||++||.+ +....+++++||+.+++|+.++++|.+|..|++++++++||+
T Consensus 74 ~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv 153 (315)
T 4asc_A 74 HLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYV 153 (315)
T ss_dssp TTTTEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEE
T ss_pred CCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEE
Confidence 99999999999999999999999999999999975 356788999999999999999999999999999999999999
Q ss_pred EcCccccCCCC-cceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCC
Q psy2979 251 TGGAILEDGDG-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPM 329 (400)
Q Consensus 251 ~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~ 329 (400)
+||.. ++.. .+++++||+.+++|+.++++|.+|..|++++++++||++||.+.... .+++++||+.+++|+.++++
T Consensus 154 ~GG~~--~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~yd~~~~~W~~~~~~ 230 (315)
T 4asc_A 154 IGGKG--SDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGL-TSSAEVYSITDNKWAPFEAF 230 (315)
T ss_dssp ECCBC--TTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSE-EEEEEEEETTTTEEEEECCC
T ss_pred EeCCC--CCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCc-cceEEEEECCCCeEEECCCC
Confidence 99983 2223 88999999999999999999999999999999999999999877665 78999999999999999999
Q ss_pred cCccCcceEEEECCEEEEEcCccC----CC----CCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEccccccccc
Q psy2979 330 KEKRYRPGIAVIDGKIYVLGGEEG----WD----GYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQIHKSQFVD 398 (400)
Q Consensus 330 ~~~~~~~~~~~~~~~lyv~GG~~~----~~----~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~ 398 (400)
|.+|..|++++++++||++||.+. .. ...+++++||+++++|+.+ +|.+|..+++++++++.++|-.
T Consensus 231 p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~--~~~~r~~~~~~~~~~~l~v~~~ 305 (315)
T 4asc_A 231 PQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV--LREIAYAAGATFLPVRLNVLRL 305 (315)
T ss_dssp SSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE--ESCSSCCSSCEEEEEEECGGGS
T ss_pred CCcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh--ccCCcCccceEEeCCEEEEEEe
Confidence 999999999999999999999821 11 2457899999999999999 6788999999999999998753
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-49 Score=359.56 Aligned_cols=283 Identities=24% Similarity=0.396 Sum_probs=251.5
Q ss_pred cCcCCCCCCCcEEEEEeccCCCcccceEEEEEcCCCceEEcc-CCcccceeeeEEEECCeEEEEEee------------c
Q psy2979 100 TKPRKSAGSINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLS-CLPFAISKHGLVVSGRNTIYCLDI------------V 166 (400)
Q Consensus 100 ~~~r~~~~~~~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~-~~~~~~~~~~~~~~~~~~iyv~~~------------~ 166 (400)
.+||..+...+.++++||. .++.||+.+++|...+ +.|.+|..|+++..++. ||++.. .
T Consensus 6 ~~~r~~~~~~~~i~~~GG~-------~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~~ 77 (318)
T 2woz_A 6 DIPRHGMFVKDLILLVNDT-------AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQ-VYVVGGLYVDEENKDQPLQ 77 (318)
T ss_dssp SSCCCCCSEEEEEEEECSS-------EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSC-EEEEESSCC-------CCC
T ss_pred ccccccceecchhhhcccc-------ceEEECCCCCceecccCCccCCccceEEEEECCE-EEEECCcccCccccCCCcc
Confidence 3578877777899999994 3799999999999843 22368889999999999 999921 1
Q ss_pred CEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccC--CCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe
Q psy2979 167 DIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWD--GSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH 244 (400)
Q Consensus 167 ~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~--~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~ 244 (400)
+.++.||+.+++|..+++||.+|..|+++.++++||++||.. +....+++++||+.+++|+.++++|.+|..|+++++
T Consensus 78 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 157 (318)
T 2woz_A 78 SYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISH 157 (318)
T ss_dssp BEEEEEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEE
T ss_pred ccEEEEeCCCCcEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEE
Confidence 238999999999999999999999999999999999999986 445678899999999999999999999999999999
Q ss_pred CCEEEEEcCccccCCCC-cceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeE
Q psy2979 245 EGMLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTW 323 (400)
Q Consensus 245 ~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 323 (400)
+++||++||.. ++.. .+++++||+.+++|+.++++|.+|..|++++++++||++||.+.... .+++++||+.+++|
T Consensus 158 ~~~iyv~GG~~--~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~yd~~~~~W 234 (318)
T 2woz_A 158 NGMIYCLGGKT--DDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGL-SASVEAFDLKTNKW 234 (318)
T ss_dssp TTEEEEECCEE--SSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEE-EEEEEEEETTTCCE
T ss_pred CCEEEEEcCCC--CCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCCc-cceEEEEECCCCeE
Confidence 99999999973 2223 78899999999999999999999999999999999999999876555 78999999999999
Q ss_pred EEccCCcCccCcceEEEECCEEEEEcCccCC---------CCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEccccc
Q psy2979 324 EYKSPMKEKRYRPGIAVIDGKIYVLGGEEGW---------DGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQIHKS 394 (400)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~---------~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~~~ 394 (400)
+.++++|.+|..|++++++++||++||. .. ....+++++||+++++|+.+ +|.+|+.|++++++++.|
T Consensus 235 ~~~~~~p~~r~~~~~~~~~~~i~v~GG~-~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~--~~~~r~~~~~~~~~~~iy 311 (318)
T 2woz_A 235 EVMTEFPQERSSISLVSLAGSLYAIGGF-AMIQLESKEFAPTEVNDIWKYEDDKKEWAGM--LKEIRYASGASCLATRLN 311 (318)
T ss_dssp EECCCCSSCCBSCEEEEETTEEEEECCB-CCBC----CCBCCBCCCEEEEETTTTEEEEE--ESCCGGGTTCEEEEEEEE
T ss_pred EECCCCCCcccceEEEEECCEEEEECCe-eccCCCCceeccceeeeEEEEeCCCCEehhh--cccccccccceeeCCEEE
Confidence 9999999999999999999999999998 43 13468999999999999999 899999999999999998
Q ss_pred cc
Q psy2979 395 QF 396 (400)
Q Consensus 395 ~~ 396 (400)
+|
T Consensus 312 i~ 313 (318)
T 2woz_A 312 LF 313 (318)
T ss_dssp GG
T ss_pred EE
Confidence 87
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-45 Score=329.46 Aligned_cols=250 Identities=27% Similarity=0.478 Sum_probs=222.3
Q ss_pred CcccceeeeEEEECCeEEEEE-----eecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEccc----CCCCCC
Q psy2979 143 LPFAISKHGLVVSGRNTIYCL-----DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGW----DGSCRL 213 (400)
Q Consensus 143 ~~~~~~~~~~~~~~~~~iyv~-----~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~----~~~~~~ 213 (400)
-|..|..|+.+.+++. ||++ ...+.++.||+.+++|..++++|.+|..++++.++++||++||. .+....
T Consensus 11 ~~~~~~~~~~~~~~~~-i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~ 89 (308)
T 1zgk_A 11 SGLVPRGSHAPKVGRL-IYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDS 89 (308)
T ss_dssp ----------CCCCCC-EEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEEC
T ss_pred CCeeeCCccccCCCCE-EEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeec
Confidence 3567788888889999 9999 44678999999999999999999999999999999999999998 555567
Q ss_pred CeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCC-cceEEEEeCCCCceeeccCCCCCceeeeEEE
Q psy2979 214 DSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICA 292 (400)
Q Consensus 214 ~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~ 292 (400)
+++++||+.+++|+.+++||.+|..|++++++++||++||. ++.. .+++++||+.+++|+.++++|.+|..|++++
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~---~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 166 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGS---HGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV 166 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCE---ETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCC---CCCcccccEEEECCCCCeEeECCCCCccccceEEEE
Confidence 89999999999999999999999999999999999999998 5555 7899999999999999999999999999999
Q ss_pred ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEE
Q psy2979 293 LDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWE 372 (400)
Q Consensus 293 ~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~ 372 (400)
++++||++||.+.... .+++++||+.+++|+.++++|.+|..+++++++++||++||. ......+++++||+++++|+
T Consensus 167 ~~~~iyv~GG~~~~~~-~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~-~~~~~~~~v~~yd~~~~~W~ 244 (308)
T 1zgk_A 167 LNRLLYAVGGFDGTNR-LNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGY-DGQDQLNSVERYDVETETWT 244 (308)
T ss_dssp ETTEEEEECCBCSSCB-CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCB-CSSSBCCCEEEEETTTTEEE
T ss_pred ECCEEEEEeCCCCCCc-CceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCC-CCCCccceEEEEeCCCCcEE
Confidence 9999999999887766 789999999999999999999999999999999999999998 66566889999999999999
Q ss_pred EecCCCCCCCceeeEEEccccccccc
Q psy2979 373 IMSHLPSARSWLGCVPLQIHKSQFVD 398 (400)
Q Consensus 373 ~~~~~~~~r~~~~~~~~~~~~~~~~~ 398 (400)
.+++||.+|..+++++++++.+++.|
T Consensus 245 ~~~~~p~~r~~~~~~~~~~~i~v~GG 270 (308)
T 1zgk_A 245 FVAPMKHRRSALGITVHQGRIYVLGG 270 (308)
T ss_dssp ECCCCSSCCBSCEEEEETTEEEEECC
T ss_pred ECCCCCCCccceEEEEECCEEEEEcC
Confidence 99999999999999999987766643
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=320.66 Aligned_cols=241 Identities=26% Similarity=0.516 Sum_probs=218.0
Q ss_pred EEECCeEEEEE-----eecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceE
Q psy2979 153 VVSGRNTIYCL-----DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWS 227 (400)
Q Consensus 153 ~~~~~~~iyv~-----~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 227 (400)
+.+++. ||++ ...+++++||+.+++|..++++|.+|..++++.++++||++||.++....+++++||+.+++|+
T Consensus 12 ~~~~~~-i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~ 90 (302)
T 2xn4_A 12 MNLPKL-MVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWT 90 (302)
T ss_dssp ---CEE-EEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEE
T ss_pred cCCCCE-EEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCcee
Confidence 345666 8888 3457899999999999999999999999999999999999999987777889999999999999
Q ss_pred EccCCCCcccccEEEEeCCEEEEEcCccccCCCC-cceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCC
Q psy2979 228 YIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHAS 306 (400)
Q Consensus 228 ~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~ 306 (400)
.++++|.+|..|++++++++||++||. ++.. .+++++||+.+++|+.++++|.+|..|++++++++||++||.+..
T Consensus 91 ~~~~~p~~r~~~~~~~~~~~iyv~GG~---~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 167 (302)
T 2xn4_A 91 SVANMRDRRSTLGAAVLNGLLYAVGGF---DGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVA 167 (302)
T ss_dssp EECCCSSCCBSCEEEEETTEEEEEEEE---CSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETT
T ss_pred eCCCCCccccceEEEEECCEEEEEcCC---CCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCC
Confidence 999999999999999999999999998 6555 889999999999999999999999999999999999999998654
Q ss_pred CC-CCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCcee
Q psy2979 307 TE-NTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLG 385 (400)
Q Consensus 307 ~~-~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~ 385 (400)
.. ..+++++||+.+++|+.++++|.+|..|++++++++||++||. +.....+++++||+++++|+.++.||.+|..|+
T Consensus 168 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~-~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~ 246 (302)
T 2xn4_A 168 SRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGH-DGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAG 246 (302)
T ss_dssp TTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCB-SSSSBCCCEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred CCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCC-CCCcccceEEEEeCCCCCEeeCCCCCCccccCe
Confidence 31 1678999999999999999999999999999999999999998 655667899999999999999999999999999
Q ss_pred eEEEccccccccc
Q psy2979 386 CVPLQIHKSQFVD 398 (400)
Q Consensus 386 ~~~~~~~~~~~~~ 398 (400)
+++++++.+++.|
T Consensus 247 ~~~~~~~i~v~GG 259 (302)
T 2xn4_A 247 VCAVNGLLYVVGG 259 (302)
T ss_dssp EEEETTEEEEECC
T ss_pred EEEECCEEEEECC
Confidence 9999887766543
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-43 Score=317.01 Aligned_cols=234 Identities=22% Similarity=0.376 Sum_probs=214.2
Q ss_pred EEEE---eecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcc
Q psy2979 160 IYCL---DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAV 236 (400)
Q Consensus 160 iyv~---~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~ 236 (400)
||++ ...++++.||+.+++|..++++|.+|..++++.++++||++||.+ ....+++++||+.+++|+.++++|.+|
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~d~~~~~W~~~~~~p~~r 92 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQ-LFPIKRMDCYNVVKDSWYSKLGPPTPR 92 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBS-SSBCCEEEEEETTTTEEEEEECCSSCC
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCC-CCCcceEEEEeCCCCeEEECCCCCccc
Confidence 6776 337889999999999999999999999999999999999999988 667889999999999999999999999
Q ss_pred cccEEEEeCCEEEEEcCccccC-CCC-cceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCC---CC
Q psy2979 237 TSPAVVAHEGMLYVTGGAILED-GDG-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTEN---TN 311 (400)
Q Consensus 237 ~~~~~~~~~~~iyv~GG~~~~~-~~~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~---~~ 311 (400)
..|++++++++||++||. + +.. .+++++||+.+++|+.++++|.+|..|+++.++++||++||.+..... .+
T Consensus 93 ~~~~~~~~~~~iyv~GG~---~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 169 (306)
T 3ii7_A 93 DSLAACAAEGKIYTSGGS---EVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLN 169 (306)
T ss_dssp BSCEEEEETTEEEEECCB---BTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECC
T ss_pred cceeEEEECCEEEEECCC---CCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccc
Confidence 999999999999999998 5 333 789999999999999999999999999999999999999997655432 67
Q ss_pred eEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEcc
Q psy2979 312 RVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQI 391 (400)
Q Consensus 312 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 391 (400)
++++||+.+++|+.++++|.+|..|++++++++||++||. ......+++++||+++++|+.++.+|.+|..++++++++
T Consensus 170 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~-~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 248 (306)
T 3ii7_A 170 SCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQ-NGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGS 248 (306)
T ss_dssp CEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCE-ETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEETT
T ss_pred eEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCC-CCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEECC
Confidence 8999999999999999999999999999999999999998 555567899999999999999999999999999999988
Q ss_pred ccccccc
Q psy2979 392 HKSQFVD 398 (400)
Q Consensus 392 ~~~~~~~ 398 (400)
+.+++.|
T Consensus 249 ~i~v~GG 255 (306)
T 3ii7_A 249 IVYVLAG 255 (306)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 7666543
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=313.79 Aligned_cols=238 Identities=29% Similarity=0.524 Sum_probs=218.8
Q ss_pred ECCeEEEEE-------eecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCc--
Q psy2979 155 SGRNTIYCL-------DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNE-- 225 (400)
Q Consensus 155 ~~~~~iyv~-------~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~-- 225 (400)
.++. ||++ ...++++.||+.+++|..++++|.+|..++++..+++||++||.++....+++++||+.+++
T Consensus 13 ~~~~-i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 13 ANEV-LLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CCEE-EEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCCE-EEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 4555 7777 34578999999999999999999999999999999999999999877778899999999999
Q ss_pred -eEEccCCCCcccccEEEEeCCEEEEEcCccccCCCC-cceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCc
Q psy2979 226 -WSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGW 303 (400)
Q Consensus 226 -W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~ 303 (400)
|+.++++|.+|..|+++.++++||++||. ++.. .+++++||+.+++|+.++++|.+|..|++++++++||++||.
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~---~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 168 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTLGDMIYVSGGF---DGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGY 168 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEETTEEEEECCB---CSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCB
T ss_pred eeEECCCCCCCccceeEEEECCEEEEEccc---CCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCC
Confidence 99999999999999999999999999998 6555 789999999999999999999999999999999999999998
Q ss_pred CCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCc
Q psy2979 304 HASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSW 383 (400)
Q Consensus 304 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~ 383 (400)
+.... .+++++||+.+++|+.++++|.+|..|++++++++||++||. +.....+++++||+++++|+.++.+|.+|..
T Consensus 169 ~~~~~-~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~-~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~ 246 (301)
T 2vpj_A 169 DGLNI-LNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGF-DGTAHLSSVEAYNIRTDSWTTVTSMTTPRCY 246 (301)
T ss_dssp CSSCB-CCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCB-CSSSBCCCEEEEETTTTEEEEECCCSSCCBS
T ss_pred CCCcc-cceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCC-CCCcccceEEEEeCCCCcEEECCCCCCcccc
Confidence 77665 789999999999999999999999999999999999999998 6555678999999999999999999999999
Q ss_pred eeeEEEccccccccc
Q psy2979 384 LGCVPLQIHKSQFVD 398 (400)
Q Consensus 384 ~~~~~~~~~~~~~~~ 398 (400)
|++++++++.+++.|
T Consensus 247 ~~~~~~~~~i~v~GG 261 (301)
T 2vpj_A 247 VGATVLRGRLYAIAG 261 (301)
T ss_dssp CEEEEETTEEEEECC
T ss_pred eeEEEECCEEEEEcC
Confidence 999999887666543
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-42 Score=319.17 Aligned_cols=256 Identities=17% Similarity=0.234 Sum_probs=215.0
Q ss_pred EccCCcccceeeeEEEECCeEEEEE--eecCEEEEEECC--CCCeEEccCCC-CcceeeeEEEECCEEEEEccc-C----
Q psy2979 139 TLSCLPFAISKHGLVVSGRNTIYCL--DIVDIVYVAASM--HKILHSLGSLK-FDFDVSGIAMLDGFVYAVGGW-D---- 208 (400)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~iyv~--~~~~~~~~yd~~--~~~w~~~~~~~-~~r~~~~~~~~~~~iyv~GG~-~---- 208 (400)
.++++|.+|..|+++++++. ||++ ...+++++||+. +++|..+++|| .+|..++++.++++||++||. .
T Consensus 2 ~l~~lP~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~ 80 (357)
T 2uvk_A 2 VLPETPVPFKSGTGAIDNDT-VYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEG 80 (357)
T ss_dssp CSCCCSSCCCSCEEEEETTE-EEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTS
T ss_pred CCCCCCccccceEEEEECCE-EEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCc
Confidence 46889999999999888999 9999 445689999998 49999999999 899999999999999999998 3
Q ss_pred CCCCCCeEEEEeCCCCceEEccCCC-CcccccEEEEeCCEEEEEcCccccCCC---------------------------
Q psy2979 209 GSCRLDSVERYDPTKNEWSYIEPMK-LAVTSPAVVAHEGMLYVTGGAILEDGD--------------------------- 260 (400)
Q Consensus 209 ~~~~~~~v~~yd~~~~~W~~~~~l~-~~~~~~~~~~~~~~iyv~GG~~~~~~~--------------------------- 260 (400)
....++++++||+.+++|+.+++|+ .+|..|++++++++||++||. ++.
T Consensus 81 ~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (357)
T 2uvk_A 81 LTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGV---NQNIFNGYFEDLNEAGKDSTAIDKINAHYF 157 (357)
T ss_dssp CEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECC---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCc---CCCcCcccccchhhcCCcccchhhhhhhhc
Confidence 1245789999999999999999998 999999999999999999997 321
Q ss_pred -------C-cceEEEEeCCCCceeeccCCCCCcee-eeEEEECCeEEEEcCcCCCCCCCCeEEEEEC--CCCeEEEccCC
Q psy2979 261 -------G-IEQVQRYNPKVNQWQDLAPMLIPRSG-AAICALDSCIYVLGGWHASTENTNRVECYHI--AENTWEYKSPM 329 (400)
Q Consensus 261 -------~-~~~v~~yd~~~~~W~~~~~~~~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~--~~~~W~~~~~~ 329 (400)
. ++.+++||+.+++|+.++++|.++.. +++++++++||++||.+........+++||+ .+++|+.++++
T Consensus 158 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~ 237 (357)
T 2uvk_A 158 DKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPV 237 (357)
T ss_dssp SSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCS
T ss_pred cccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCC
Confidence 1 47999999999999999999977555 9999999999999997654322678999976 99999999998
Q ss_pred cCcc--CcceEEEECCEEEEEcCccCC----------------CCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEcc
Q psy2979 330 KEKR--YRPGIAVIDGKIYVLGGEEGW----------------DGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQI 391 (400)
Q Consensus 330 ~~~~--~~~~~~~~~~~lyv~GG~~~~----------------~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 391 (400)
|.++ ..+++++++++|||+||.... .....++++||+++++|+.++.||.+|..|+++++++
T Consensus 238 ~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 317 (357)
T 2uvk_A 238 SSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNN 317 (357)
T ss_dssp STTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETT
T ss_pred CCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCC
Confidence 7664 467789999999999996211 1223689999999999999999999999999999999
Q ss_pred ccccccc
Q psy2979 392 HKSQFVD 398 (400)
Q Consensus 392 ~~~~~~~ 398 (400)
+.++|.|
T Consensus 318 ~i~v~GG 324 (357)
T 2uvk_A 318 SLLIIGG 324 (357)
T ss_dssp EEEEEEE
T ss_pred EEEEEee
Confidence 8777654
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-42 Score=310.36 Aligned_cols=236 Identities=21% Similarity=0.323 Sum_probs=206.3
Q ss_pred EEEEeecCEEEEEECCCCCeEEccCC--CCcceeeeEEEECCEEEEEcccC----C--CCCCCeEEEEeCCCCceEEccC
Q psy2979 160 IYCLDIVDIVYVAASMHKILHSLGSL--KFDFDVSGIAMLDGFVYAVGGWD----G--SCRLDSVERYDPTKNEWSYIEP 231 (400)
Q Consensus 160 iyv~~~~~~~~~yd~~~~~w~~~~~~--~~~r~~~~~~~~~~~iyv~GG~~----~--~~~~~~v~~yd~~~~~W~~~~~ 231 (400)
||++.. +.++.|||.+++|.. +++ |.+|..++++.++++||++||.. . ....+++++||+.+++|+.+++
T Consensus 7 l~~~GG-~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 7 IFMISE-EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEEET-TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEEcC-CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 555533 789999999999987 666 45899999999999999999962 1 1234559999999999999999
Q ss_pred CCCcccccEEEEeCCEEEEEcCccccCCCC-cceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCC
Q psy2979 232 MKLAVTSPAVVAHEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENT 310 (400)
Q Consensus 232 l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 310 (400)
+|.+|..|++++++++||++||....++.. .+++++||+.+++|+.++++|.+|..|++++++++||++||........
T Consensus 85 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 164 (315)
T 4asc_A 85 LPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCL 164 (315)
T ss_dssp BSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBC
T ss_pred CCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCccc
Confidence 999999999999999999999973212233 8899999999999999999999999999999999999999984433337
Q ss_pred CeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEc
Q psy2979 311 NRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQ 390 (400)
Q Consensus 311 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 390 (400)
+++++||+.+++|+.++++|.+|..|++++++++||++||. ......+++++||+++++|+.++++|.+|..|++++++
T Consensus 165 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~-~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 243 (315)
T 4asc_A 165 NKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGV-TDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLV 243 (315)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEE-CSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEET
T ss_pred ceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEecc-CCCCccceEEEEECCCCeEEECCCCCCcccceeEEEEC
Confidence 89999999999999999999999999999999999999998 65566789999999999999999999999999999999
Q ss_pred cccccccc
Q psy2979 391 IHKSQFVD 398 (400)
Q Consensus 391 ~~~~~~~~ 398 (400)
++.|++.|
T Consensus 244 ~~l~v~GG 251 (315)
T 4asc_A 244 GTLYAIGG 251 (315)
T ss_dssp TEEEEEEE
T ss_pred CEEEEECC
Confidence 97776643
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-41 Score=314.16 Aligned_cols=264 Identities=15% Similarity=0.196 Sum_probs=217.9
Q ss_pred CcEEEEEeccCCCcccceEEEEEcC--CCceEEccCCc-ccceeeeEEEECCeEEEEE--e---------ecCEEEEEEC
Q psy2979 109 INVIIAVGGEDDKVVLRSVEGFCVK--TKVWKTLSCLP-FAISKHGLVVSGRNTIYCL--D---------IVDIVYVAAS 174 (400)
Q Consensus 109 ~~~i~~~gg~~~~~~~~~~~~yd~~--~~~w~~~~~~~-~~~~~~~~~~~~~~~iyv~--~---------~~~~~~~yd~ 174 (400)
.+.|+++||.+. ++++.||+. +++|..++++| .+|..|+++++++. ||++ . ..+++++||+
T Consensus 19 ~~~iyv~GG~~~----~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~~~v~~yd~ 93 (357)
T 2uvk_A 19 NDTVYIGLGSAG----TAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGN-LYVFGGIGKNSEGLTQVFNDVHKYNP 93 (357)
T ss_dssp TTEEEEECGGGT----TCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTE-EEEECCEEECTTSCEEECCCEEEEET
T ss_pred CCEEEEEeCcCC----CeEEEEccccCCCCeeECCCCCCCcCccceEEEECCE-EEEEcCCCCCCCccceeeccEEEEeC
Confidence 588999999763 479999998 48999999999 89999999999999 9999 2 1467999999
Q ss_pred CCCCeEEccCCC-CcceeeeEEEECCEEEEEcccCCC----------------------------------CCCCeEEEE
Q psy2979 175 MHKILHSLGSLK-FDFDVSGIAMLDGFVYAVGGWDGS----------------------------------CRLDSVERY 219 (400)
Q Consensus 175 ~~~~w~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~----------------------------------~~~~~v~~y 219 (400)
.+++|+.+++|+ .+|..++++..+++||++||.+.. ..++++++|
T Consensus 94 ~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y 173 (357)
T 2uvk_A 94 KTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSF 173 (357)
T ss_dssp TTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEE
T ss_pred CCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEE
Confidence 999999999998 899999999999999999998643 246899999
Q ss_pred eCCCCceEEccCCCCcccc-cEEEEeCCEEEEEcCccccCCCC--cceEEEEeC--CCCceeeccCCCCC--ceeeeEEE
Q psy2979 220 DPTKNEWSYIEPMKLAVTS-PAVVAHEGMLYVTGGAILEDGDG--IEQVQRYNP--KVNQWQDLAPMLIP--RSGAAICA 292 (400)
Q Consensus 220 d~~~~~W~~~~~l~~~~~~-~~~~~~~~~iyv~GG~~~~~~~~--~~~v~~yd~--~~~~W~~~~~~~~~--r~~~~~~~ 292 (400)
|+.+++|+.++++|.++.. +++++++++||++||. ++.. .+.+++||+ .+++|+.+++++.+ |..|++++
T Consensus 174 d~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~---~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~ 250 (357)
T 2uvk_A 174 DPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGE---AKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGI 250 (357)
T ss_dssp ETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCE---EETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEE
T ss_pred eCCCCcEEECCCCCCCCcccccEEEECCEEEEEeee---cCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEE
Confidence 9999999999999977655 9999999999999998 4333 678999976 99999999988766 45777999
Q ss_pred ECCeEEEEcCcCCCC----------------CCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCC
Q psy2979 293 LDSCIYVLGGWHAST----------------ENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDG 356 (400)
Q Consensus 293 ~~~~iyv~GG~~~~~----------------~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~ 356 (400)
++++||++||.+... ....++++||+.+++|+.++++|.+|..|++++++++|||+||.+....
T Consensus 251 ~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~ 330 (357)
T 2uvk_A 251 SNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGK 330 (357)
T ss_dssp ETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECGGGC
T ss_pred ECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCCCCC
Confidence 999999999964321 1136899999999999999999999999999999999999999833333
Q ss_pred CCCeEEEEECCCCcEEEecCCCCC
Q psy2979 357 YHDSIECYDVDNDSWEIMSHLPSA 380 (400)
Q Consensus 357 ~~~~v~~yd~~~~~W~~~~~~~~~ 380 (400)
..+++++|+.++++|.+..+.|..
T Consensus 331 ~~~~v~~l~~~~~~~~~~~~~~~~ 354 (357)
T 2uvk_A 331 AVTDSVLITVKDNKVTVQNLEHHH 354 (357)
T ss_dssp EEEEEEEEEC-CCSCEEEC-----
T ss_pred EeeeEEEEEEcCcEeEeeeccccc
Confidence 468999999999999999776643
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=303.24 Aligned_cols=235 Identities=26% Similarity=0.395 Sum_probs=203.9
Q ss_pred EEEEeecCEEEEEECCCCCeEEccCC--CCcceeeeEEEECCEEEEEcccCC--C----CCCCeEEEEeCCCCceEEccC
Q psy2979 160 IYCLDIVDIVYVAASMHKILHSLGSL--KFDFDVSGIAMLDGFVYAVGGWDG--S----CRLDSVERYDPTKNEWSYIEP 231 (400)
Q Consensus 160 iyv~~~~~~~~~yd~~~~~w~~~~~~--~~~r~~~~~~~~~~~iyv~GG~~~--~----~~~~~v~~yd~~~~~W~~~~~ 231 (400)
||++.. ..+++|||.+++|... ++ +.+|..++++..+++||++||... . ...+.+++||+.+++|+.+++
T Consensus 18 i~~~GG-~~~~~yd~~~~~W~~~-~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 95 (318)
T 2woz_A 18 ILLVND-TAAVAYDPMENECYLT-ALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP 95 (318)
T ss_dssp EEEECS-SEEEEEETTTTEEEEE-EECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred hhhccc-cceEEECCCCCceecc-cCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence 666622 3589999999999984 44 368999999999999999999631 1 123459999999999999999
Q ss_pred CCCcccccEEEEeCCEEEEEcCccccCCCC-cceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCC
Q psy2979 232 MKLAVTSPAVVAHEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENT 310 (400)
Q Consensus 232 l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 310 (400)
+|.+|..|++++++++||++||... .+.. .+++++||+.+++|+.++++|.+|..|++++++++||++||........
T Consensus 96 ~p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 174 (318)
T 2woz_A 96 LPSARCLFGLGEVDDKIYVVAGKDL-QTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCT 174 (318)
T ss_dssp BSSCBCSCEEEEETTEEEEEEEEBT-TTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBC
T ss_pred CCccccccceEEECCEEEEEcCccC-CCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCcc
Confidence 9999999999999999999999821 0223 7899999999999999999999999999999999999999975443327
Q ss_pred CeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEc
Q psy2979 311 NRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQ 390 (400)
Q Consensus 311 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 390 (400)
+++++||+.+++|+.++++|.+|..|++++++++|||+||. ......+++++||+++++|+.++++|.+|..|++++++
T Consensus 175 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~-~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 253 (318)
T 2woz_A 175 NRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGV-TEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLA 253 (318)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEE-ETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEET
T ss_pred ceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCc-CCCCccceEEEEECCCCeEEECCCCCCcccceEEEEEC
Confidence 89999999999999999999999999999999999999998 55556789999999999999999999999999999999
Q ss_pred cccccccc
Q psy2979 391 IHKSQFVD 398 (400)
Q Consensus 391 ~~~~~~~~ 398 (400)
++.|++.|
T Consensus 254 ~~i~v~GG 261 (318)
T 2woz_A 254 GSLYAIGG 261 (318)
T ss_dssp TEEEEECC
T ss_pred CEEEEECC
Confidence 97776644
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-37 Score=306.28 Aligned_cols=255 Identities=14% Similarity=0.178 Sum_probs=211.4
Q ss_pred ceEEccCCcccceeeeEEEECCeEEEEE-----eecCEEEEEECCCCCeEEcc-C-----CCCcceeeeEEEE--CCEEE
Q psy2979 136 VWKTLSCLPFAISKHGLVVSGRNTIYCL-----DIVDIVYVAASMHKILHSLG-S-----LKFDFDVSGIAML--DGFVY 202 (400)
Q Consensus 136 ~w~~~~~~~~~~~~~~~~~~~~~~iyv~-----~~~~~~~~yd~~~~~w~~~~-~-----~~~~r~~~~~~~~--~~~iy 202 (400)
+|...+..|..|.+++ +++++. ||++ ...+++++||+.+++|..++ + +|.+|..|+++.+ +++||
T Consensus 378 ~~~~~~~~p~rr~g~~-~~~~~~-iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~ly 455 (695)
T 2zwa_A 378 QLLECECPINRKFGDV-DVAGND-VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLL 455 (695)
T ss_dssp EEEECCCTTCCBSCEE-EECSSC-EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEE
T ss_pred eEeccCCCCCCceeEE-EEECCE-EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEE
Confidence 3555555566666544 448888 9999 24578999999999999998 5 7899999999999 99999
Q ss_pred EEcccCCCC-CCCeEEEEeCCCCceEEccCCCCcccccEEEEe-CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccC
Q psy2979 203 AVGGWDGSC-RLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH-EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAP 280 (400)
Q Consensus 203 v~GG~~~~~-~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~ 280 (400)
++||.++.. .++++++||+.+++|+.+++||.+|..|+++++ +++|||+||. ++.. ++++||+.+++|+.+++
T Consensus 456 v~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~---~~~~--~v~~yd~~t~~W~~~~~ 530 (695)
T 2zwa_A 456 LIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGV---TEGP--AMLLYNVTEEIFKDVTP 530 (695)
T ss_dssp EECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCB---CSSC--SEEEEETTTTEEEECCC
T ss_pred EEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCC---CCCC--CEEEEECCCCceEEccC
Confidence 999998654 688999999999999999999999999999996 9999999998 5432 89999999999999986
Q ss_pred ---CCCCceeeeEEEEC---CeEEEEcCcCCCC-CCCCeEEEEECCCCe------EEEccCC-cCccCcceEEEEC-CEE
Q psy2979 281 ---MLIPRSGAAICALD---SCIYVLGGWHAST-ENTNRVECYHIAENT------WEYKSPM-KEKRYRPGIAVID-GKI 345 (400)
Q Consensus 281 ---~~~~r~~~~~~~~~---~~iyv~GG~~~~~-~~~~~v~~yd~~~~~------W~~~~~~-~~~~~~~~~~~~~-~~l 345 (400)
+|.+|..|++++++ ++||++||..... ...+++++||+.+++ |+.++++ +.+|..|++++++ ++|
T Consensus 531 ~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~i 610 (695)
T 2zwa_A 531 KDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKL 610 (695)
T ss_dssp SSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEE
T ss_pred CCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEE
Confidence 89999999988876 8999999985442 227899999999999 9999886 4899999999999 999
Q ss_pred EEEcCccCCC---CCCCeEEEEECCCCcEEEecCCC--------CCCCceeeEEEcccccccccC
Q psy2979 346 YVLGGEEGWD---GYHDSIECYDVDNDSWEIMSHLP--------SARSWLGCVPLQIHKSQFVDK 399 (400)
Q Consensus 346 yv~GG~~~~~---~~~~~v~~yd~~~~~W~~~~~~~--------~~r~~~~~~~~~~~~~~~~~~ 399 (400)
||+||. +.. ...+++++||+.+++|+.++ +| ..+.+|+++++++..++++||
T Consensus 611 yv~GG~-~~~~~~~~~~~v~~yd~~t~~W~~~~-~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GG 673 (695)
T 2zwa_A 611 LIVGGT-SPSGLFDRTNSIISLDPLSETLTSIP-ISRRIWEDHSLMLAGFSLVSTSMGTIHIIGG 673 (695)
T ss_dssp EEECCB-CSSCCCCTTTSEEEEETTTTEEEECC-CCHHHHHHSCCCCSSCEEECC---CEEEECC
T ss_pred EEECCc-cCCCCCCCCCeEEEEECCCCeEEEee-ccccccCCCCccceeeeEEEeCCCEEEEEeC
Confidence 999998 433 25789999999999999653 22 246789999998844444554
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=308.83 Aligned_cols=284 Identities=13% Similarity=0.096 Sum_probs=225.6
Q ss_pred CcEEEEEeccCCC------cccceEEEEEcCCCceEEccCCcccceeee--EEE-ECCeEEEEE--eecCEEEEEECCCC
Q psy2979 109 INVIIAVGGEDDK------VVLRSVEGFCVKTKVWKTLSCLPFAISKHG--LVV-SGRNTIYCL--DIVDIVYVAASMHK 177 (400)
Q Consensus 109 ~~~i~~~gg~~~~------~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~--~~~-~~~~~iyv~--~~~~~~~~yd~~~~ 177 (400)
.+.++++||.+.. .....+++||+.+++|..++.+|.+|..++ +++ .++. ||++ ....++++||+.++
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-lyv~GG~~~~~v~~yd~~t~ 275 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTSLYDSSSD 275 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEEEEEGGGT
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCC-EEEeCCCCCCceEEecCcCC
Confidence 4789999997632 134578999999999999988887776654 444 4777 9999 33458999999999
Q ss_pred CeEEccCCCCcceeeeEEEE-CCEEEEEcc-cCCCCCCCeEEEEeCCCCceEEc-----cCCCCcccccEEEEeCCEEEE
Q psy2979 178 ILHSLGSLKFDFDVSGIAML-DGFVYAVGG-WDGSCRLDSVERYDPTKNEWSYI-----EPMKLAVTSPAVVAHEGMLYV 250 (400)
Q Consensus 178 ~w~~~~~~~~~r~~~~~~~~-~~~iyv~GG-~~~~~~~~~v~~yd~~~~~W~~~-----~~l~~~~~~~~~~~~~~~iyv 250 (400)
+|.++++|+.+|..++++.+ +++||++|| .++....+++++||+.+++|+.+ ++|+..+. ++++..++++|+
T Consensus 276 ~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~-~~~~~~~~~iyv 354 (656)
T 1k3i_A 276 SWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK-QGLYRSDNHAWL 354 (656)
T ss_dssp EEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT-TGGGTTTCSCCE
T ss_pred ceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccc-cceeecCCceEE
Confidence 99999999999999999999 999999999 45556788999999999999998 45555554 355668999999
Q ss_pred EcCccccCCCC-----cceEEEEeCCCCceeeccC-CCC------CceeeeEEE---ECCeEEEEcCcCCC---CCCCC-
Q psy2979 251 TGGAILEDGDG-----IEQVQRYNPKVNQWQDLAP-MLI------PRSGAAICA---LDSCIYVLGGWHAS---TENTN- 311 (400)
Q Consensus 251 ~GG~~~~~~~~-----~~~v~~yd~~~~~W~~~~~-~~~------~r~~~~~~~---~~~~iyv~GG~~~~---~~~~~- 311 (400)
+||. ++.. .+.++.||+.++.|..... .+. ++..++++. .+++||++||.+.. .. .+
T Consensus 355 ~Gg~---~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~-~~~ 430 (656)
T 1k3i_A 355 FGWK---KGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDA-TTN 430 (656)
T ss_dssp EECG---GGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBC-CCC
T ss_pred EECC---CCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCc-CCc
Confidence 9998 5431 6789999999999875432 111 233344443 48999999996431 12 33
Q ss_pred --eEEEEECCCCeEEEcc--CCcCccCcceEEEE-CCEEEEEcCccCC-----CCCCCeEEEEECCCCcEEEecCCCCCC
Q psy2979 312 --RVECYHIAENTWEYKS--PMKEKRYRPGIAVI-DGKIYVLGGEEGW-----DGYHDSIECYDVDNDSWEIMSHLPSAR 381 (400)
Q Consensus 312 --~v~~yd~~~~~W~~~~--~~~~~~~~~~~~~~-~~~lyv~GG~~~~-----~~~~~~v~~yd~~~~~W~~~~~~~~~r 381 (400)
.+++||+.+++|..+. +||.+|..++++++ +|+|||+||.+.. .....++++|||++++|+.++.||.+|
T Consensus 431 ~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R 510 (656)
T 1k3i_A 431 AHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVR 510 (656)
T ss_dssp EEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCC
T ss_pred ceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCcc
Confidence 7999999999999987 99999999999988 9999999997211 234688999999999999999999999
Q ss_pred CceeeEEE--ccccccccc
Q psy2979 382 SWLGCVPL--QIHKSQFVD 398 (400)
Q Consensus 382 ~~~~~~~~--~~~~~~~~~ 398 (400)
..|+++++ +++++++.|
T Consensus 511 ~~hs~a~ll~dg~v~v~GG 529 (656)
T 1k3i_A 511 VYHSISLLLPDGRVFNGGG 529 (656)
T ss_dssp CTTEEEEECTTSCEEEEEC
T ss_pred ccccHhhcCCCcEEEecCC
Confidence 99998887 665554433
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-38 Score=311.37 Aligned_cols=254 Identities=13% Similarity=0.121 Sum_probs=212.0
Q ss_pred CCcEEEEEeccCCCcccceEEEEEcCCCceEEcc-C-----CcccceeeeEEEE--CCeEEEEE-------eecCEEEEE
Q psy2979 108 SINVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLS-C-----LPFAISKHGLVVS--GRNTIYCL-------DIVDIVYVA 172 (400)
Q Consensus 108 ~~~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~-~-----~~~~~~~~~~~~~--~~~~iyv~-------~~~~~~~~y 172 (400)
+.+.|+++||.+. ...+++++||+.+++|..++ + +|.+|..|+++++ ++. ||++ ...++++.|
T Consensus 396 ~~~~iyv~GG~~~-~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~-lyv~GG~~~~~~~~~dv~~y 473 (695)
T 2zwa_A 396 AGNDVFYMGGSNP-YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQ-LLLIGGRKAPHQGLSDNWIF 473 (695)
T ss_dssp CSSCEEEECCBSS-SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTE-EEEECCBSSTTCBCCCCEEE
T ss_pred ECCEEEEECCCCC-CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCE-EEEEcCCCCCCCccccEEEE
Confidence 3578999999876 77889999999999999988 5 7899999999999 888 9999 246789999
Q ss_pred ECCCCCeEEccCCCCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccC---CCCcccccEEEEeC---
Q psy2979 173 ASMHKILHSLGSLKFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEP---MKLAVTSPAVVAHE--- 245 (400)
Q Consensus 173 d~~~~~w~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~---l~~~~~~~~~~~~~--- 245 (400)
|+.+++|+.+++||.+|..|+++.+ +++||++||.++.. ++++||+.+++|+.+++ +|.+|..|++++++
T Consensus 474 d~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~---~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~ 550 (695)
T 2zwa_A 474 DMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP---AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS 550 (695)
T ss_dssp ETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC---SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred eCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC---CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC
Confidence 9999999999999999999999997 99999999987655 89999999999999987 89999999988877
Q ss_pred CEEEEEcCccccCCCC-cceEEEEeCCCCc------eeeccCC-CCCceeeeEEEEC-CeEEEEcCcCCCC--CCCCeEE
Q psy2979 246 GMLYVTGGAILEDGDG-IEQVQRYNPKVNQ------WQDLAPM-LIPRSGAAICALD-SCIYVLGGWHAST--ENTNRVE 314 (400)
Q Consensus 246 ~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~------W~~~~~~-~~~r~~~~~~~~~-~~iyv~GG~~~~~--~~~~~v~ 314 (400)
++||++||... ++.. .+++++||+.+++ |+.++++ +.+|.+|++++++ ++||++||.+... ...++++
T Consensus 551 ~~iyv~GG~~~-~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 551 KQGIILGGGFM-DQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TEEEEECCBCT-TSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CEEEEECCcCC-CCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 89999999831 1113 7899999999999 8999876 5899999999999 9999999976543 1278999
Q ss_pred EEECCCCeEEEccCCc--------CccCcceEEEECC-EEEEEcCccCC---CCCCCeEEEEECCC
Q psy2979 315 CYHIAENTWEYKSPMK--------EKRYRPGIAVIDG-KIYVLGGEEGW---DGYHDSIECYDVDN 368 (400)
Q Consensus 315 ~yd~~~~~W~~~~~~~--------~~~~~~~~~~~~~-~lyv~GG~~~~---~~~~~~v~~yd~~~ 368 (400)
+||+.+++|+.++ +| ..+.+|+++++++ +|||+||.... +...+.+|.+|..+
T Consensus 630 ~yd~~t~~W~~~~-~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~~cfsfGt~~n~i~~ldl~~ 694 (695)
T 2zwa_A 630 SLDPLSETLTSIP-ISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGATCYGFGSVTNVGLKLIAIA 694 (695)
T ss_dssp EEETTTTEEEECC-CCHHHHHHSCCCCSSCEEECC---CEEEECCEEECTTSCEEECCCEEEEECC
T ss_pred EEECCCCeEEEee-ccccccCCCCccceeeeEEEeCCCEEEEEeCCccCcCccccccceEEEEEEc
Confidence 9999999999653 22 1356788887765 99999996211 22345778877654
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=282.04 Aligned_cols=263 Identities=16% Similarity=0.209 Sum_probs=204.2
Q ss_pred EEEEEcCCCceEEccCCcccceeeeEEEE--CCeEEEEEe------------ecCEEEEEECCCCCeEEccCCCCcceee
Q psy2979 127 VEGFCVKTKVWKTLSCLPFAISKHGLVVS--GRNTIYCLD------------IVDIVYVAASMHKILHSLGSLKFDFDVS 192 (400)
Q Consensus 127 ~~~yd~~~~~w~~~~~~~~~~~~~~~~~~--~~~~iyv~~------------~~~~~~~yd~~~~~w~~~~~~~~~r~~~ 192 (400)
.+.||+.+++|..++++|. ..++++++ +++ ||++. ....+++||+.+++|..+++|+.+|..+
T Consensus 168 ~~~~dp~~~~W~~~~~~P~--~~~~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~ 244 (656)
T 1k3i_A 168 YTAPQPGLGRWGPTIDLPI--VPAAAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMF 244 (656)
T ss_dssp CCCCCTTSCEEEEEEECSS--CCSEEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCS
T ss_pred cccCCCCCCeeeeeccCCC--CceeEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCc
Confidence 5678899999999887765 44556666 788 99991 1236899999999999999998888766
Q ss_pred e--EEE-ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe-CCEEEEEcCccccCCCC-cceEEE
Q psy2979 193 G--IAM-LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH-EGMLYVTGGAILEDGDG-IEQVQR 267 (400)
Q Consensus 193 ~--~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~-~~~v~~ 267 (400)
+ ++. .+++||++||.... ++++||+.+++|+.+++||.+|..|+++++ +++||++||.. ++.. .+++++
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~----~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~--~~~~~~~~~e~ 318 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAK----KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSW--SGGVFEKNGEV 318 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTT----CEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCC--CSSSCCCCEEE
T ss_pred cccccCCCCCCEEEeCCCCCC----ceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcc--cCCcccccceE
Confidence 4 333 48999999997643 799999999999999999999999999999 99999999942 4443 788999
Q ss_pred EeCCCCceeec-----cCCCCCceeeeEEEECCeEEEEcCcCCCC---CCCCeEEEEECCCCeEEEcc-CCcC------c
Q psy2979 268 YNPKVNQWQDL-----APMLIPRSGAAICALDSCIYVLGGWHAST---ENTNRVECYHIAENTWEYKS-PMKE------K 332 (400)
Q Consensus 268 yd~~~~~W~~~-----~~~~~~r~~~~~~~~~~~iyv~GG~~~~~---~~~~~v~~yd~~~~~W~~~~-~~~~------~ 332 (400)
||+.+++|+.+ .+|+..+.. +++..++++|++||.++.. ...+.++.||+.++.|.... ..+. .
T Consensus 319 yd~~t~~W~~~~~~~~~p~~~~~~~-~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~ 397 (656)
T 1k3i_A 319 YSPSSKTWTSLPNAKVNPMLTADKQ-GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPD 397 (656)
T ss_dssp EETTTTEEEEETTSCSGGGCCCCTT-GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCC
T ss_pred eCCCCCcceeCCCcccccccccccc-ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCC
Confidence 99999999997 466666553 5566799999999976531 11678999999999987533 2222 2
Q ss_pred cCcceEEE---ECCEEEEEcCcc--CCCCCCC---eEEEEECCCCcEEEec--CCCCCCCceeeEEEcccccccccC
Q psy2979 333 RYRPGIAV---IDGKIYVLGGEE--GWDGYHD---SIECYDVDNDSWEIMS--HLPSARSWLGCVPLQIHKSQFVDK 399 (400)
Q Consensus 333 ~~~~~~~~---~~~~lyv~GG~~--~~~~~~~---~v~~yd~~~~~W~~~~--~~~~~r~~~~~~~~~~~~~~~~~~ 399 (400)
+..+.++. .+++||++||.. ......+ .+++||+.+++|..+. .||.+|..|+++++.+..++++||
T Consensus 398 ~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG 474 (656)
T 1k3i_A 398 AMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGG 474 (656)
T ss_dssp CBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECC
T ss_pred CCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECC
Confidence 23344443 489999999962 1122234 7999999999999986 899999999999994445555565
|
| >3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 | Back alignment and structure |
|---|
Probab=99.69 E-value=9.9e-17 Score=122.15 Aligned_cols=88 Identities=22% Similarity=0.210 Sum_probs=78.9
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc-ceeecCCCCHH---HHHHHhhhcccccCchhHHH
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL-ETIRLPQLSPY---FLHDCVEQCAIIKNNPQCAQ 77 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m-~~vrl~~l~~~---~l~~~i~~~~l~~~~~~c~~ 77 (400)
+.+++.|+ |+++.||||+|.++|+.|+|||.||||+|+||++. ..|.++.++++ .|++++|++++..+..+..+
T Consensus 17 ~~~l~~l~--r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~~~~i~l~~v~~~~f~~ll~fiYtg~~~i~~~~v~~ 94 (119)
T 3m5b_A 17 DRLVQLAA--RLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGRRGQWALGEGISPSTFAQLLNFVYGESVELQPGELRP 94 (119)
T ss_dssp CHHHHHHH--HHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCCCEEEECCSSCCHHHHHHHHHHHTTCCEEECGGGHHH
T ss_pred HHHHHHHH--HhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhcCCCEEEeCCCCHHHHHHHHHHHcCCCcCcCHHHHHH
Confidence 56788887 78899999999999999999999999999999986 57889999998 67789999999999999999
Q ss_pred HHHHHHhcCCCccc
Q psy2979 78 LVEEAKLFHLLPDR 91 (400)
Q Consensus 78 ~l~~a~~~~~~~~~ 91 (400)
++.+|..+++....
T Consensus 95 ll~aA~~l~i~~l~ 108 (119)
T 3m5b_A 95 LQEAARALGVQSLE 108 (119)
T ss_dssp HHHHHHHTTCHHHH
T ss_pred HHHHHHHhCCHHHH
Confidence 99999998865544
|
| >3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.6e-17 Score=123.67 Aligned_cols=90 Identities=28% Similarity=0.369 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc------ceeecCCCCHH---HHHHHhhhcccccCc
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL------ETIRLPQLSPY---FLHDCVEQCAIIKNN 72 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m------~~vrl~~l~~~---~l~~~i~~~~l~~~~ 72 (400)
+.+++.|+++|+++.||||+|.++|+.|+|||.|||++|+||++| ..|+++.++++ .+++++|++++..+.
T Consensus 9 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~~~i~l~~~~~~~f~~ll~~iYtg~~~~~~ 88 (119)
T 3b84_A 9 VRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGSGGSVVLPAGFAEIFGLLLDFFYTGHLALTS 88 (119)
T ss_dssp HHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTTCCCEEECGGGHHHHHHHHHHHHHSCCCCCT
T ss_pred HHHHHHHHHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCCCCeEEeCCCCHHHHHHHHHHHcCCCCccCH
Confidence 468999999999999999999999999999999999999999988 57899999886 578999999998888
Q ss_pred hhHHHHHHHHHhcCCCccc
Q psy2979 73 PQCAQLVEEAKLFHLLPDR 91 (400)
Q Consensus 73 ~~c~~~l~~a~~~~~~~~~ 91 (400)
.+..+++..|..+++....
T Consensus 89 ~~v~~ll~~A~~~~i~~L~ 107 (119)
T 3b84_A 89 GNRDQVLLAARELRVPEAV 107 (119)
T ss_dssp TTHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHH
Confidence 8999999999998765543
|
| >2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.4e-17 Score=125.61 Aligned_cols=91 Identities=27% Similarity=0.360 Sum_probs=82.1
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc------ceeecCCCCHH---HHHHHhhhcccccCc
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL------ETIRLPQLSPY---FLHDCVEQCAIIKNN 72 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m------~~vrl~~l~~~---~l~~~i~~~~l~~~~ 72 (400)
..+++.|+++|+++.||||+|.++++.|+|||.|||++|+||++| ..|+|+.++++ .+++++|++++..+.
T Consensus 10 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~~~i~l~~~~~~~f~~lL~fiYtg~~~i~~ 89 (135)
T 2yy9_A 10 VRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGTGGSVVLPAGFAEIFGLLLDFFYTGHLALTS 89 (135)
T ss_dssp HHHHHHHHHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC----CCEEECGGGHHHHHHHHHHHHHSCCCCCT
T ss_pred HHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCCCCeEEeCCCCHHHHHHHHHHHhCCCCCCCH
Confidence 468999999999999999999999999999999999999999988 46899999886 578999999998888
Q ss_pred hhHHHHHHHHHhcCCCcccc
Q psy2979 73 PQCAQLVEEAKLFHLLPDRR 92 (400)
Q Consensus 73 ~~c~~~l~~a~~~~~~~~~~ 92 (400)
.+..+++..|..+++....+
T Consensus 90 ~~v~~ll~~A~~l~i~~L~~ 109 (135)
T 2yy9_A 90 GNRDQVLLAAKELRVPEAVE 109 (135)
T ss_dssp TTHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHH
Confidence 99999999999988655443
|
| >3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-16 Score=122.71 Aligned_cols=91 Identities=29% Similarity=0.458 Sum_probs=82.1
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc--------ceeecCC-CCHH---HHHHHhhhcccc
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL--------ETIRLPQ-LSPY---FLHDCVEQCAII 69 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m--------~~vrl~~-l~~~---~l~~~i~~~~l~ 69 (400)
+.+++.|+++|+++.||||+|.++++.|+|||.|||++|+||++| ..|+++. ++++ .+++++|++++.
T Consensus 17 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~~~~~~f~~~l~~iYtg~~~ 96 (125)
T 3ohu_A 17 TNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKNDLVVSLPEEVTARGFGPLLQFAYTAKLL 96 (125)
T ss_dssp HHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCSSCEEECCTTCCHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhHcCCceE
Confidence 468999999999999999999999999999999999999999988 3688988 9987 678899999998
Q ss_pred cCchhHHHHHHHHHhcCCCcccc
Q psy2979 70 KNNPQCAQLVEEAKLFHLLPDRR 92 (400)
Q Consensus 70 ~~~~~c~~~l~~a~~~~~~~~~~ 92 (400)
.+..+..+++..|..+++....+
T Consensus 97 ~~~~~v~~ll~~A~~l~i~~L~~ 119 (125)
T 3ohu_A 97 LSRENIREVIRCAEFLRMHNLED 119 (125)
T ss_dssp ECTTTHHHHHHHHHHHTBSSCTT
T ss_pred ECHHHHHHHHHHHHHhCCHHHHH
Confidence 89999999999999988766543
|
| >3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-16 Score=121.01 Aligned_cols=87 Identities=29% Similarity=0.470 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc-----ceeecCCCCHH---HHHHHhhhccc-ccCc
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL-----ETIRLPQLSPY---FLHDCVEQCAI-IKNN 72 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m-----~~vrl~~l~~~---~l~~~i~~~~l-~~~~ 72 (400)
..+++.|+++|+++.||||+|.++++.|+|||.|||++|+||++| ..|+++.++++ .+++++|++++ ..+.
T Consensus 16 ~~l~~~l~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~~~~i~l~~~~~~~f~~~l~~~Ytg~~~~~~~ 95 (116)
T 3fkc_A 16 GSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVAGQVVELSFIRAEIFAEILNYIYSSKIVRVRS 95 (116)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSCCSEEEECSSCHHHHHHHHHHHTTSCCCSCCH
T ss_pred HHHHHHHHHHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCCCCEEEeCCCCHHHHHHHHHhhcCCCcCCCCH
Confidence 468999999999999999999999999999999999999999988 47999999998 67889999999 6888
Q ss_pred hhHHHHHHHHHhcCCC
Q psy2979 73 PQCAQLVEEAKLFHLL 88 (400)
Q Consensus 73 ~~c~~~l~~a~~~~~~ 88 (400)
.+..+++..|..+++.
T Consensus 96 ~~~~~ll~~A~~l~i~ 111 (116)
T 3fkc_A 96 DLLDELIKSGQLLGVK 111 (116)
T ss_dssp HHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhCcc
Confidence 8999999999888753
|
| >2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-16 Score=122.42 Aligned_cols=92 Identities=30% Similarity=0.471 Sum_probs=82.0
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc--------ceeecC-CCCHH---HHHHHhhhcccc
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL--------ETIRLP-QLSPY---FLHDCVEQCAII 69 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m--------~~vrl~-~l~~~---~l~~~i~~~~l~ 69 (400)
..+++.|+++|+++.||||+|.++|+.|+|||.|||++|+||++| ..|+++ .++++ .+++++|++++.
T Consensus 14 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~i~l~~~v~~~~f~~lL~~iYtg~~~ 93 (124)
T 2ihc_A 14 TNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGELNITLPEEVTVKGFEPLIQFAYTAKLI 93 (124)
T ss_dssp HHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHSEEE
T ss_pred HHHHHHHHHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCCceEeecCCcCHHHHHHHHHHhcCCCcc
Confidence 468999999999999999999999999999999999999999988 358885 88887 578999999998
Q ss_pred cCchhHHHHHHHHHhcCCCccccc
Q psy2979 70 KNNPQCAQLVEEAKLFHLLPDRRS 93 (400)
Q Consensus 70 ~~~~~c~~~l~~a~~~~~~~~~~~ 93 (400)
.+..+..+++..|..+++....+.
T Consensus 94 i~~~~v~~ll~~A~~~~~~~L~~~ 117 (124)
T 2ihc_A 94 LSKENVDEVCKCVEFLSVHNIEES 117 (124)
T ss_dssp EETTTHHHHHHHHHHHTBSSCCGG
T ss_pred cCHHHHHHHHHHHHHHCCHHHHHH
Confidence 888899999999999987765543
|
| >2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-16 Score=122.03 Aligned_cols=89 Identities=27% Similarity=0.434 Sum_probs=80.9
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc-----ceeecCCCCHH---HHHHHhhhcccccCch
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL-----ETIRLPQLSPY---FLHDCVEQCAIIKNNP 73 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m-----~~vrl~~l~~~---~l~~~i~~~~l~~~~~ 73 (400)
+.+++.|+++|+++.||||+|.++++.|+|||.|||++|+||++| ..|.++.++++ .+++++|++++..+..
T Consensus 12 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~~~~i~l~~~~~~~f~~ll~~~Ytg~~~i~~~ 91 (119)
T 2q81_A 12 QHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQKDVVHLDISNAAGLGQVLEFMYTAKLSLSPE 91 (119)
T ss_dssp HHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCCSGGGGGGCCHHHHHHHHHHHHHSCCCCCTT
T ss_pred HHHHHHHHHHHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcCCCCEEEeCCCCHHHHHHHHHHHcCCCCccCHH
Confidence 468999999999999999999999999999999999999999998 56888888886 6789999999988888
Q ss_pred hHHHHHHHHHhcCCCcc
Q psy2979 74 QCAQLVEEAKLFHLLPD 90 (400)
Q Consensus 74 ~c~~~l~~a~~~~~~~~ 90 (400)
+..+++..|..+++...
T Consensus 92 ~~~~ll~~A~~l~i~~L 108 (119)
T 2q81_A 92 NVDDVLAVATFLQMQDI 108 (119)
T ss_dssp THHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCCHHH
Confidence 99999999999876544
|
| >1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-16 Score=121.11 Aligned_cols=89 Identities=27% Similarity=0.391 Sum_probs=81.1
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc-----ceeecCCCCHH---HHHHHhhhcccccCch
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL-----ETIRLPQLSPY---FLHDCVEQCAIIKNNP 73 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m-----~~vrl~~l~~~---~l~~~i~~~~l~~~~~ 73 (400)
+.+++.|+++|+++.||||+|.++++.|+|||.|||++|+||++| ..|+++.++++ .+++++|++++..+..
T Consensus 13 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~~i~l~~~~~~~f~~ll~~~Ytg~~~~~~~ 92 (121)
T 1buo_A 13 TGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQHYTLDFLSPKTFQQILEYAYTATLQAKAE 92 (121)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSCCSEEEECSSCHHHHHHHHHHHHHSCCCCCGG
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCCCcEEEeCCCCHHHHHHHHHhhcCCCcCCCHH
Confidence 468999999999999999999999999999999999999999988 57999999997 5788999999988889
Q ss_pred hHHHHHHHHHhcCCCcc
Q psy2979 74 QCAQLVEEAKLFHLLPD 90 (400)
Q Consensus 74 ~c~~~l~~a~~~~~~~~ 90 (400)
+..+++..|..+++...
T Consensus 93 ~~~~ll~~A~~~~i~~L 109 (121)
T 1buo_A 93 DLDDLLYAAEILEIEYL 109 (121)
T ss_dssp GHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHCCHHH
Confidence 99999999998876443
|
| >3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.3e-16 Score=121.68 Aligned_cols=92 Identities=30% Similarity=0.451 Sum_probs=83.0
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc------ceeecC-CCCHH---HHHHHhhhcccccC
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL------ETIRLP-QLSPY---FLHDCVEQCAIIKN 71 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m------~~vrl~-~l~~~---~l~~~i~~~~l~~~ 71 (400)
+.+++.|+++|+++.||||+|.++++.|+|||.|||++|+||++| ..|+++ .++++ .+++++|++++..+
T Consensus 18 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~~~~~i~l~~~~~~~~f~~ll~~iYtg~~~i~ 97 (129)
T 3ga1_A 18 NSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNSRSAVVELPAAVQPQSFQQILSFCYTGRLSMN 97 (129)
T ss_dssp HHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHCCCSEEECCTTCCHHHHHHHHHHHHHSEEECC
T ss_pred HHHHHHHHHHHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCCCCCEEEECCCCCHHHHHHHHHHHhCCccccC
Confidence 468999999999999999999999999999999999999999988 478997 89998 57889999999989
Q ss_pred chhHHHHHHHHHhcCCCccccc
Q psy2979 72 NPQCAQLVEEAKLFHLLPDRRS 93 (400)
Q Consensus 72 ~~~c~~~l~~a~~~~~~~~~~~ 93 (400)
..+..+++..|..+++....+.
T Consensus 98 ~~~~~~ll~~A~~~~i~~l~~~ 119 (129)
T 3ga1_A 98 VGDQDLLMYTAGFLQIQEIMEK 119 (129)
T ss_dssp TTTHHHHHHHHHHTTBTTSSCC
T ss_pred HHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999999999987665443
|
| >2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A | Back alignment and structure |
|---|
Probab=99.63 E-value=5.1e-16 Score=119.06 Aligned_cols=89 Identities=31% Similarity=0.539 Sum_probs=80.7
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc----------ceeecCCCCHH---HHHHHhhhccc
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL----------ETIRLPQLSPY---FLHDCVEQCAI 68 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m----------~~vrl~~l~~~---~l~~~i~~~~l 68 (400)
+.+++.|+++|+++.||||+|.++++.|+|||.|||++|+||++| ..|+++.++++ .+++++|++++
T Consensus 10 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~~ 89 (120)
T 2if5_A 10 SDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATL 89 (120)
T ss_dssp HHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHcCCCC
Confidence 468999999999999999999999999999999999999999987 46899999997 57889999999
Q ss_pred ccCchhHHHHHHHHHhcCCCcc
Q psy2979 69 IKNNPQCAQLVEEAKLFHLLPD 90 (400)
Q Consensus 69 ~~~~~~c~~~l~~a~~~~~~~~ 90 (400)
..+..+..+++..|..+++...
T Consensus 90 ~~~~~~~~~ll~~A~~~~i~~L 111 (120)
T 2if5_A 90 TVSTANVGDILSAARLLEIPAV 111 (120)
T ss_dssp CCCGGGHHHHHHHHHHTTCHHH
T ss_pred ccCHHHHHHHHHHHHHhCCHHH
Confidence 8888999999999998876543
|
| >2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.1e-16 Score=118.78 Aligned_cols=89 Identities=22% Similarity=0.338 Sum_probs=80.0
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc------ceeecC--CCCHH---HHHHHhhhccccc
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL------ETIRLP--QLSPY---FLHDCVEQCAIIK 70 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m------~~vrl~--~l~~~---~l~~~i~~~~l~~ 70 (400)
..+++.|+++|+++.||||+|.++++.|+|||.|||++|+||++| ..|+++ .++++ .+++++|++++..
T Consensus 7 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~~ 86 (116)
T 2vpk_A 7 EHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTSENNVFLDQSQVKADGFQKLLEFIYTGTLNL 86 (116)
T ss_dssp HHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCSCEECCTTTCCHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCCCCCeEEeecCCCCHHHHHHHHHHHcCCCccc
Confidence 468999999999999999999999999999999999999999988 457777 89987 5789999999988
Q ss_pred CchhHHHHHHHHHhcCCCcc
Q psy2979 71 NNPQCAQLVEEAKLFHLLPD 90 (400)
Q Consensus 71 ~~~~c~~~l~~a~~~~~~~~ 90 (400)
+..+..+++..|..+++...
T Consensus 87 ~~~~v~~ll~~A~~~~i~~L 106 (116)
T 2vpk_A 87 DSWNVKEIHQAADYLKVEEV 106 (116)
T ss_dssp CTTTHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHhCCHHH
Confidence 88899999999998876543
|
| >2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=3e-16 Score=123.39 Aligned_cols=92 Identities=30% Similarity=0.465 Sum_probs=82.0
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc--------ceeecC-CCCHH---HHHHHhhhcccc
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL--------ETIRLP-QLSPY---FLHDCVEQCAII 69 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m--------~~vrl~-~l~~~---~l~~~i~~~~l~ 69 (400)
..+++.|+++|+++.||||+|.++|+.|+|||.|||++|+||++| ..|+++ .++++ .+++++|++++.
T Consensus 21 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~v~~~~~~~lL~~~Ytg~~~ 100 (138)
T 2z8h_A 21 TNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLPEEVTVKGFEPLIQFAYTAKLI 100 (138)
T ss_dssp HHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTTEEEECCTTSCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCCceEEeCCCCCHHHHHHHHHHhcCCCcc
Confidence 468999999999999999999999999999999999999999988 358885 88887 578999999998
Q ss_pred cCchhHHHHHHHHHhcCCCccccc
Q psy2979 70 KNNPQCAQLVEEAKLFHLLPDRRS 93 (400)
Q Consensus 70 ~~~~~c~~~l~~a~~~~~~~~~~~ 93 (400)
.+..+..+++..|..+++....+.
T Consensus 101 i~~~~v~~ll~~A~~~~i~~L~~~ 124 (138)
T 2z8h_A 101 LSKDNVDEVCRCVEFLSVHNIEES 124 (138)
T ss_dssp CCTTTHHHHHHHHHHHTCGGGHHH
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHH
Confidence 888999999999999987665443
|
| >2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.6e-16 Score=122.97 Aligned_cols=90 Identities=28% Similarity=0.447 Sum_probs=79.0
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc------------ceeecCCCCHH---HHHHHhhhc
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL------------ETIRLPQLSPY---FLHDCVEQC 66 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m------------~~vrl~~l~~~---~l~~~i~~~ 66 (400)
+.+++.|+++|+++.||||+|.++++.|+|||.|||++|+||++| ..|+|+.++++ .+++++|++
T Consensus 32 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg 111 (144)
T 2ppi_A 32 ARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSG 111 (144)
T ss_dssp HHHHHHHHHTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCC
Confidence 468999999999999999999999999999999999999999977 35889999997 678899999
Q ss_pred ccccCchhHHHHHHHHHhcCCCccc
Q psy2979 67 AIIKNNPQCAQLVEEAKLFHLLPDR 91 (400)
Q Consensus 67 ~l~~~~~~c~~~l~~a~~~~~~~~~ 91 (400)
++..+..+..+++..|..+++....
T Consensus 112 ~~~i~~~~v~~ll~~A~~l~i~~L~ 136 (144)
T 2ppi_A 112 QIRLNEDTIQDVVQAADLLLLTDLK 136 (144)
T ss_dssp CCCCCTTTHHHHHHHHHHTTCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCcHHHH
Confidence 9988889999999999998765443
|
| >1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A | Back alignment and structure |
|---|
Probab=99.62 E-value=8.6e-16 Score=119.02 Aligned_cols=89 Identities=25% Similarity=0.359 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc---------ceeec-CCCCHH---HHHHHhhhccc
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL---------ETIRL-PQLSPY---FLHDCVEQCAI 68 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m---------~~vrl-~~l~~~---~l~~~i~~~~l 68 (400)
+.+++.|+++|+++.||||+|.++++.|+|||.|||++|+||++| ..|+| +.++++ .+++++|++++
T Consensus 14 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e~~~~i~l~~~~~~~~f~~ll~~~Ytg~~ 93 (127)
T 1r29_A 14 SDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRL 93 (127)
T ss_dssp HHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccCCCCEEEeCCCCCHHHHHHHHHHHcCCCc
Confidence 468999999999999999999999999999999999999999987 46899 899987 57889999999
Q ss_pred ccCchhHHHHHHHHHhcCCCcc
Q psy2979 69 IKNNPQCAQLVEEAKLFHLLPD 90 (400)
Q Consensus 69 ~~~~~~c~~~l~~a~~~~~~~~ 90 (400)
..+..+..+++..|..+++...
T Consensus 94 ~~~~~~~~~ll~~A~~~~i~~L 115 (127)
T 1r29_A 94 NLREGNIMAVMATAMYLQMEHV 115 (127)
T ss_dssp CCCTTTHHHHHHHHHHTTCHHH
T ss_pred CcCHHHHHHHHHHHHHhCCHHH
Confidence 8888999999999999876543
|
| >4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.3e-14 Score=111.30 Aligned_cols=90 Identities=22% Similarity=0.363 Sum_probs=81.0
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc----------ceeecCCCCHH---HHHHHhhhccc
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL----------ETIRLPQLSPY---FLHDCVEQCAI 68 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m----------~~vrl~~l~~~---~l~~~i~~~~l 68 (400)
..++..|+++++++.||||+|.++++.|+|||.||+++|+||+.| ..|+++.++++ .+++++|++.+
T Consensus 10 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~ 89 (145)
T 4eoz_A 10 CRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA 89 (145)
T ss_dssp CCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCcc
Confidence 358899999999999999999999999999999999999999988 57999999998 57789999999
Q ss_pred ccCchhHHHHHHHHHhcCCCccc
Q psy2979 69 IKNNPQCAQLVEEAKLFHLLPDR 91 (400)
Q Consensus 69 ~~~~~~c~~~l~~a~~~~~~~~~ 91 (400)
..+..+..+++..|..+++....
T Consensus 90 ~~~~~~~~~ll~~A~~~~~~~l~ 112 (145)
T 4eoz_A 90 PNLDKMADDLLAAADKYALERLK 112 (145)
T ss_dssp TTGGGTHHHHHHHHHHTTCHHHH
T ss_pred CCcHHHHHHHHHHHHHhCHHHHH
Confidence 88888899999999998765543
|
| >3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A | Back alignment and structure |
|---|
Probab=99.47 E-value=5e-14 Score=124.69 Aligned_cols=89 Identities=30% Similarity=0.451 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHhcCceeceEEEEC---CeEEehhhHHHhhcCcccccc----------ceeecC------CCCHH---HH
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVD---GSKFPAHRVVLAASSPYFKVL----------ETIRLP------QLSPY---FL 59 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~---~~~~~~hr~vLaa~s~yf~~m----------~~vrl~------~l~~~---~l 59 (400)
..+++.|+++|+++.||||+|.++ |+.|+|||.|||++|+||++| ..|+++ .++++ .+
T Consensus 17 ~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~l 96 (279)
T 3i3n_A 17 SELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAV 96 (279)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHH
Confidence 568999999999999999999998 999999999999999999998 368898 78887 67
Q ss_pred HHHhhhcccccCchhHHHHHHHHHhcCCCcc
Q psy2979 60 HDCVEQCAIIKNNPQCAQLVEEAKLFHLLPD 90 (400)
Q Consensus 60 ~~~i~~~~l~~~~~~c~~~l~~a~~~~~~~~ 90 (400)
++++|++++..+..+..+++.+|..+++...
T Consensus 97 l~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~L 127 (279)
T 3i3n_A 97 IEYMYTGRIRVSTGSVHEVLELADRFLLIRL 127 (279)
T ss_dssp HHHHHHSEEEEETTTHHHHHHHHHHTTCHHH
T ss_pred HHhhCcCCcccCHHHHHHHHHHHHHHCcHHH
Confidence 8899999998888889999999988875443
|
| >3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B | Back alignment and structure |
|---|
Probab=99.47 E-value=3.3e-14 Score=124.26 Aligned_cols=90 Identities=28% Similarity=0.447 Sum_probs=77.9
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCccccccc------------eeecCCCCHH---HHHHHhhhc
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVLE------------TIRLPQLSPY---FLHDCVEQC 66 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m~------------~vrl~~l~~~---~l~~~i~~~ 66 (400)
..+++.|+++|+++.||||+|.++|+.|+|||.|||++|+||++|. .|.++.++++ .+++++|++
T Consensus 16 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~ 95 (256)
T 3hve_A 16 ARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSG 95 (256)
T ss_dssp HHHHHHHHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCC
Confidence 4689999999999999999999999999999999999999999883 5889999998 677899999
Q ss_pred ccccCchhHHHHHHHHHhcCCCccc
Q psy2979 67 AIIKNNPQCAQLVEEAKLFHLLPDR 91 (400)
Q Consensus 67 ~l~~~~~~c~~~l~~a~~~~~~~~~ 91 (400)
++..+..+..+++.+|..+++....
T Consensus 96 ~~~i~~~~v~~ll~~A~~l~i~~l~ 120 (256)
T 3hve_A 96 QIRLNEDTIQDVVQAADLLLLTDLK 120 (256)
T ss_dssp CCCCC-CCHHHHHHHHHHHTCHHHH
T ss_pred CCcccHhHHHHHHHHHHHHChHHHH
Confidence 9988888999999999888765443
|
| >3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=9e-14 Score=113.86 Aligned_cols=90 Identities=22% Similarity=0.363 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc----------ceeecCCCCHH---HHHHHhhhccc
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL----------ETIRLPQLSPY---FLHDCVEQCAI 68 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m----------~~vrl~~l~~~---~l~~~i~~~~l 68 (400)
..++..|+++++++.||||+|.++++.|+|||.||+++|+||+.| ..|.++.++++ .+++++|++++
T Consensus 19 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~ 98 (172)
T 3htm_A 19 CRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA 98 (172)
T ss_dssp CCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCCC
Confidence 357899999999999999999999999999999999999999988 57999999998 57789999999
Q ss_pred ccCchhHHHHHHHHHhcCCCccc
Q psy2979 69 IKNNPQCAQLVEEAKLFHLLPDR 91 (400)
Q Consensus 69 ~~~~~~c~~~l~~a~~~~~~~~~ 91 (400)
..+..+..+++..|..+++....
T Consensus 99 ~~~~~~~~~ll~~A~~~~~~~l~ 121 (172)
T 3htm_A 99 PNLDKMADDLLAAADKYALERLK 121 (172)
T ss_dssp TTGGGTHHHHHHHHHHTTCHHHH
T ss_pred CCcHHHHHHHHHHHHHhCcHHHH
Confidence 88888899999999988765443
|
| >2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=5e-14 Score=105.94 Aligned_cols=81 Identities=23% Similarity=0.286 Sum_probs=72.0
Q ss_pred HHHhcCceeceEEEECC----eEEehhhHHHhhcCcccccc---------ceeecCCCCHH---HHHHHhhhcccccCch
Q psy2979 10 EARKNNEFCDVTLCVDG----SKFPAHRVVLAASSPYFKVL---------ETIRLPQLSPY---FLHDCVEQCAIIKNNP 73 (400)
Q Consensus 10 ~~r~~~~~~Dv~l~~~~----~~~~~hr~vLaa~s~yf~~m---------~~vrl~~l~~~---~l~~~i~~~~l~~~~~ 73 (400)
+|++++.||||+|.+++ +.|+|||.|||++|+||++| ..|+++.++++ .+++++|++++..+..
T Consensus 1 ~l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~~~i~l~~~~~~~f~~~l~~iYt~~~~~~~~ 80 (109)
T 2vkp_A 1 SMFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVKSEIHIPDVEPAAFLILLKYMYSDEIDLEAD 80 (109)
T ss_dssp CCTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------CCEEEETTSCHHHHHHHHHHHHHCCCCCCTT
T ss_pred CcccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCCCeEEeCCCCHHHHHHHHHHHcCCCccCCHH
Confidence 36889999999999988 89999999999999999977 46899999997 6788999999988889
Q ss_pred hHHHHHHHHHhcCCCcc
Q psy2979 74 QCAQLVEEAKLFHLLPD 90 (400)
Q Consensus 74 ~c~~~l~~a~~~~~~~~ 90 (400)
++.+++..|..+++...
T Consensus 81 ~~~~ll~~A~~~~~~~L 97 (109)
T 2vkp_A 81 TVLATLYAAKKYIVPAL 97 (109)
T ss_dssp THHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCcHHH
Confidence 99999999999876543
|
| >3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A | Back alignment and structure |
|---|
Probab=99.32 E-value=2e-12 Score=116.38 Aligned_cols=89 Identities=22% Similarity=0.377 Sum_probs=79.2
Q ss_pred hHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc----------ceeecCCCCHH---HHHHHhhhcccc
Q psy2979 3 MVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL----------ETIRLPQLSPY---FLHDCVEQCAII 69 (400)
Q Consensus 3 ~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m----------~~vrl~~l~~~---~l~~~i~~~~l~ 69 (400)
.+++.|+++++++.|+||+|.++++.|+|||.|||++|+||++| ..|+|+.++++ .+++++|++++.
T Consensus 160 ~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~ 239 (312)
T 3hqi_A 160 RLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAP 239 (312)
T ss_dssp CHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSCCT
T ss_pred hHHHHHHHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCCCC
Confidence 57899999999999999999999999999999999999999987 47999999998 677899999887
Q ss_pred cCchhHHHHHHHHHhcCCCccc
Q psy2979 70 KNNPQCAQLVEEAKLFHLLPDR 91 (400)
Q Consensus 70 ~~~~~c~~~l~~a~~~~~~~~~ 91 (400)
.......+++.+|..|++....
T Consensus 240 ~~~~~~~~ll~~A~~~~~~~l~ 261 (312)
T 3hqi_A 240 NLDKMADDLLAAADKYALERLK 261 (312)
T ss_dssp THHHHHHHHHHHHHHTTCHHHH
T ss_pred ChHHHHHHHHHHHHHhCHHHHH
Confidence 7778889999999988765443
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-05 Score=72.77 Aligned_cols=238 Identities=9% Similarity=0.043 Sum_probs=141.4
Q ss_pred cceEEEEEcCCCceEEcc-----CCcccceeeeEEEECCeEEEEE-eecCEEEEEECCCCCe-EEccCCCCcceeeeEEE
Q psy2979 124 LRSVEGFCVKTKVWKTLS-----CLPFAISKHGLVVSGRNTIYCL-DIVDIVYVAASMHKIL-HSLGSLKFDFDVSGIAM 196 (400)
Q Consensus 124 ~~~~~~yd~~~~~w~~~~-----~~~~~~~~~~~~~~~~~~iyv~-~~~~~~~~yd~~~~~w-~~~~~~~~~r~~~~~~~ 196 (400)
...+..+|+.++++..-- ..+.....+.++..++. +|+. ...+.+..+|+.+.+. ..++....|+ .++.
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~-lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~---~i~~ 91 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGI-GWIVVNNSHVIFAIDINTFKEVGRITGFTSPR---YIHF 91 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTE-EEEEEGGGTEEEEEETTTCCEEEEEECCSSEE---EEEE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCE-EEEEEcCCCEEEEEECcccEEEEEcCCCCCCc---EEEE
Confidence 568899999998876421 11222333556667888 9999 4457899999998876 3344333333 3333
Q ss_pred -ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCc----ccccEEEEeCCEEEEEcC-ccccCCCCcceEEEEeC
Q psy2979 197 -LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLA----VTSPAVVAHEGMLYVTGG-AILEDGDGIEQVQRYNP 270 (400)
Q Consensus 197 -~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~----~~~~~~~~~~~~iyv~GG-~~~~~~~~~~~v~~yd~ 270 (400)
-++++|+.... ...+.++|+.+++-...-+.... ..-..++..++++|+..- . .+.+.++|+
T Consensus 92 ~~~g~lyv~~~~-----~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~-------~~~v~viD~ 159 (328)
T 3dsm_A 92 LSDEKAYVTQIW-----DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSY-------QNRILKIDT 159 (328)
T ss_dssp EETTEEEEEEBS-----CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTT-------CCEEEEEET
T ss_pred eCCCeEEEEECC-----CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCC-------CCEEEEEEC
Confidence 57899998643 26799999998875432122210 022344457999999852 2 247999999
Q ss_pred CCCceeeccCC-CCCceeeeEEE-ECCeEEEEcCcCCCCC----CCCeEEEEECCCCeEEEccCCcCccCcceEEEE--C
Q psy2979 271 KVNQWQDLAPM-LIPRSGAAICA-LDSCIYVLGGWHASTE----NTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--D 342 (400)
Q Consensus 271 ~~~~W~~~~~~-~~~r~~~~~~~-~~~~iyv~GG~~~~~~----~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~ 342 (400)
.+.+....-+. ..| ..++. -++++|+......... ....+.++|+.+++....-..+......+++.- +
T Consensus 160 ~t~~~~~~i~~g~~p---~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~ 236 (328)
T 3dsm_A 160 ETDKVVDELTIGIQP---TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTR 236 (328)
T ss_dssp TTTEEEEEEECSSCB---CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTS
T ss_pred CCCeEEEEEEcCCCc---cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCC
Confidence 98875433222 122 22332 3688888864321111 026899999999886643334333222333333 5
Q ss_pred CEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCC-CCCceeeEEE
Q psy2979 343 GKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPS-ARSWLGCVPL 389 (400)
Q Consensus 343 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~r~~~~~~~~ 389 (400)
+.+|+..+ .|++||+.+++.......+. ...-.++++-
T Consensus 237 ~~lyv~~~---------~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vd 275 (328)
T 3dsm_A 237 DTLYWINN---------DIWRMPVEADRVPVRPFLEFRDTKYYGLTVN 275 (328)
T ss_dssp CEEEEESS---------SEEEEETTCSSCCSSCSBCCCSSCEEEEEEC
T ss_pred CEEEEEcc---------EEEEEECCCCceeeeeeecCCCCceEEEEEc
Confidence 67888643 68999999887532222222 2334455554
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.71 E-value=4.1e-06 Score=71.08 Aligned_cols=185 Identities=17% Similarity=0.100 Sum_probs=125.4
Q ss_pred eeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEe
Q psy2979 190 DVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYN 269 (400)
Q Consensus 190 ~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd 269 (400)
..+++...++.+|+..|..+ .+++..+|+.+++=..--+++......+++..+++||++... .+.++.||
T Consensus 22 ftqGL~~~~~~LyestG~~g---~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~-------~~~v~v~D 91 (243)
T 3mbr_X 22 FTEGLFYLRGHLYESTGETG---RSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWR-------NHEGFVYD 91 (243)
T ss_dssp CEEEEEEETTEEEEEECCTT---SCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS-------SSEEEEEE
T ss_pred ccccEEEECCEEEEECCCCC---CceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEee-------CCEEEEEE
Confidence 44577777899999998654 367999999999876666777777777888899999999766 45899999
Q ss_pred CCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEE-c--cCCcCccCc-ceEEEECCEE
Q psy2979 270 PKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEY-K--SPMKEKRYR-PGIAVIDGKI 345 (400)
Q Consensus 270 ~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~--~~~~~~~~~-~~~~~~~~~l 345 (400)
+.+.+-. ..++.+..+.+++.-++++|+.-| .+++..+||++.+-.. + ...+.+... -.+...+|+|
T Consensus 92 ~~tl~~~--~ti~~~~~Gwglt~dg~~L~vSdg-------s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~l 162 (243)
T 3mbr_X 92 LATLTPR--ARFRYPGEGWALTSDDSHLYMSDG-------TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGEL 162 (243)
T ss_dssp TTTTEEE--EEEECSSCCCEEEECSSCEEEECS-------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEE
T ss_pred CCcCcEE--EEEeCCCCceEEeeCCCEEEEECC-------CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEE
Confidence 9776533 333334456777766788999876 4689999999876332 2 122222221 1244459999
Q ss_pred EEEcCccCCCCCCCeEEEEECCCCc---EEEecCCCC---------CCCceeeEEEcccccccccC
Q psy2979 346 YVLGGEEGWDGYHDSIECYDVDNDS---WEIMSHLPS---------ARSWLGCVPLQIHKSQFVDK 399 (400)
Q Consensus 346 yv~GG~~~~~~~~~~v~~yd~~~~~---W~~~~~~~~---------~r~~~~~~~~~~~~~~~~~~ 399 (400)
|+---. .+.|.+.||++++ |-.++.+.. .-.--|.|...+..-+||=|
T Consensus 163 yanvw~------s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 163 LANVWL------TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEETT------TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEEECC------CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 965533 4689999999985 555544321 11235566665555565543
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.67 E-value=0.00016 Score=66.25 Aligned_cols=212 Identities=15% Similarity=0.222 Sum_probs=127.9
Q ss_pred ceEEEEEcCCCc--eEEccCCc-------ccceeeeEEEECCeEEEEEeecCEEEEEECCCCC--eEEccCCCCcceeee
Q psy2979 125 RSVEGFCVKTKV--WKTLSCLP-------FAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKI--LHSLGSLKFDFDVSG 193 (400)
Q Consensus 125 ~~~~~yd~~~~~--w~~~~~~~-------~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~--w~~~~~~~~~r~~~~ 193 (400)
..+.+||+.+++ |..-.... ......+.+..++. +|+......++.+|+.+++ |+...+-. ...+
T Consensus 63 g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~v~~~~g~l~a~d~~tG~~~W~~~~~~~---~~~~ 138 (376)
T 3q7m_A 63 GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGH-VYIGSEKAQVYALNTSDGTVAWQTKVAGE---ALSR 138 (376)
T ss_dssp SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECSSC---CCSC
T ss_pred CeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCE-EEEEcCCCEEEEEECCCCCEEEEEeCCCc---eEcC
Confidence 378899998875 76432111 12223345566777 9988767789999998776 65432211 1222
Q ss_pred EEEECCEEEEEcccCCCCCCCeEEEEeCCCCc--eEEccCCCC--cccccEEEEeCCEEEEEcCccccCCCCcceEEEEe
Q psy2979 194 IAMLDGFVYAVGGWDGSCRLDSVERYDPTKNE--WSYIEPMKL--AVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYN 269 (400)
Q Consensus 194 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~l~~--~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd 269 (400)
.+..++.+|+..+ ...+..||+.+++ |+.-.+-+. .+...+.+..++.+|+. .. + ..+..+|
T Consensus 139 p~~~~~~v~v~~~------~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g-~~---~----g~l~~~d 204 (376)
T 3q7m_A 139 PVVSDGLVLIHTS------NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVG-GD---N----GRVSAVL 204 (376)
T ss_dssp CEEETTEEEEECT------TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEEC-CT---T----TEEEEEE
T ss_pred CEEECCEEEEEcC------CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEE-cC---C----CEEEEEE
Confidence 3445888887543 2468999998875 876543221 12223345557887763 33 2 3689999
Q ss_pred CCCCc--eeeccCCCCCc--------eeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCC--eEEEccCCcCccCcce
Q psy2979 270 PKVNQ--WQDLAPMLIPR--------SGAAICALDSCIYVLGGWHASTENTNRVECYHIAEN--TWEYKSPMKEKRYRPG 337 (400)
Q Consensus 270 ~~~~~--W~~~~~~~~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~ 337 (400)
+.+.+ |+.-...+... .....+..++.+|+.+. ...+.++|+.++ .|+.-..- ...
T Consensus 205 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~-------~g~l~~~d~~tG~~~w~~~~~~-----~~~ 272 (376)
T 3q7m_A 205 MEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY-------NGNLTALDLRSGQIMWKRELGS-----VND 272 (376)
T ss_dssp TTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECT-------TSCEEEEETTTCCEEEEECCCC-----EEE
T ss_pred CCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEec-------CcEEEEEECCCCcEEeeccCCC-----CCC
Confidence 87654 77643322111 12333455888888652 347999999877 47754211 223
Q ss_pred EEEECCEEEEEcCccCCCCCCCeEEEEECCCCc--EEE
Q psy2979 338 IAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS--WEI 373 (400)
Q Consensus 338 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~ 373 (400)
.++.++.||+.... ..+++||+.+++ |+.
T Consensus 273 ~~~~~~~l~~~~~~-------g~l~~~d~~tG~~~w~~ 303 (376)
T 3q7m_A 273 FIVDGNRIYLVDQN-------DRVMALTIDGGVTLWTQ 303 (376)
T ss_dssp EEEETTEEEEEETT-------CCEEEEETTTCCEEEEE
T ss_pred ceEECCEEEEEcCC-------CeEEEEECCCCcEEEee
Confidence 55568999997643 368999998875 765
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.7e-05 Score=69.23 Aligned_cols=208 Identities=10% Similarity=-0.035 Sum_probs=124.6
Q ss_pred cCEEEEEECCCCCeEEcc-----CCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCce-EEccCCCCccccc
Q psy2979 166 VDIVYVAASMHKILHSLG-----SLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEW-SYIEPMKLAVTSP 239 (400)
Q Consensus 166 ~~~~~~yd~~~~~w~~~~-----~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W-~~~~~l~~~~~~~ 239 (400)
...+..+|+.++++...- ..+.......++..++++|+.... ...+.++|+.+.+- ..++....+ .
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~-----~~~v~viD~~t~~~~~~i~~~~~p---~ 87 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNN-----SHVIFAIDINTFKEVGRITGFTSP---R 87 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGG-----GTEEEEEETTTCCEEEEEECCSSE---E
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcC-----CCEEEEEECcccEEEEEcCCCCCC---c
Confidence 467899999998876421 112223345566678999998653 25799999998875 334433222 2
Q ss_pred EEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCC----CceeeeEEEECCeEEEEcC-cCCCCCCCCeE
Q psy2979 240 AVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLI----PRSGAAICALDSCIYVLGG-WHASTENTNRV 313 (400)
Q Consensus 240 ~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~----~r~~~~~~~~~~~iyv~GG-~~~~~~~~~~v 313 (400)
.++. -++++|+.... ...+.++|+.+.+-...-+... ...-..++..++++|+..- . .+.+
T Consensus 88 ~i~~~~~g~lyv~~~~-------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~------~~~v 154 (328)
T 3dsm_A 88 YIHFLSDEKAYVTQIW-------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSY------QNRI 154 (328)
T ss_dssp EEEEEETTEEEEEEBS-------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTT------CCEE
T ss_pred EEEEeCCCeEEEEECC-------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCC------CCEE
Confidence 3444 68899998744 2479999999887542212111 0022344447889999852 2 4689
Q ss_pred EEEECCCCeEEEccCCcCccCcceEEEE-CCEEEEEcCccCCCC----CCCeEEEEECCCCcEEEecCCCCCCCceeeEE
Q psy2979 314 ECYHIAENTWEYKSPMKEKRYRPGIAVI-DGKIYVLGGEEGWDG----YHDSIECYDVDNDSWEIMSHLPSARSWLGCVP 388 (400)
Q Consensus 314 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~----~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~ 388 (400)
.++|+.+++....-+. +.....++.- +|++|+......... ....|+++|+.+++....-.++....-.++++
T Consensus 155 ~viD~~t~~~~~~i~~--g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~ 232 (328)
T 3dsm_A 155 LKIDTETDKVVDELTI--GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQL 232 (328)
T ss_dssp EEEETTTTEEEEEEEC--SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEE
T ss_pred EEEECCCCeEEEEEEc--CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEE
Confidence 9999999876542221 1111223222 689988764311111 13689999999987664434444444455666
Q ss_pred Eccccccc
Q psy2979 389 LQIHKSQF 396 (400)
Q Consensus 389 ~~~~~~~~ 396 (400)
-.+...++
T Consensus 233 ~~d~~~ly 240 (328)
T 3dsm_A 233 NGTRDTLY 240 (328)
T ss_dssp CTTSCEEE
T ss_pred ecCCCEEE
Confidence 54444443
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.63 E-value=0.0002 Score=65.56 Aligned_cols=230 Identities=13% Similarity=0.078 Sum_probs=135.0
Q ss_pred ceEEEEEcCCCc--eEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCC--eEEccCCCC--cceeeeEEEEC
Q psy2979 125 RSVEGFCVKTKV--WKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKI--LHSLGSLKF--DFDVSGIAMLD 198 (400)
Q Consensus 125 ~~~~~yd~~~~~--w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~--w~~~~~~~~--~r~~~~~~~~~ 198 (400)
..+..+|+.+++ |..-. +.. ...+.+..++. +|+......++.+|+.+++ |......+. .+...+.+..+
T Consensus 113 g~l~a~d~~tG~~~W~~~~--~~~-~~~~p~~~~~~-v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~ 188 (376)
T 3q7m_A 113 AQVYALNTSDGTVAWQTKV--AGE-ALSRPVVSDGL-VLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAF 188 (376)
T ss_dssp SEEEEEETTTCCEEEEEEC--SSC-CCSCCEEETTE-EEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEET
T ss_pred CEEEEEECCCCCEEEEEeC--CCc-eEcCCEEECCE-EEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEEC
Confidence 478999998876 76422 211 11223445777 8887666789999998876 775443221 12223444557
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCC--ceEEccCCCCcc--------cccEEEEeCCEEEEEcCccccCCCCcceEEEE
Q psy2979 199 GFVYAVGGWDGSCRLDSVERYDPTKN--EWSYIEPMKLAV--------TSPAVVAHEGMLYVTGGAILEDGDGIEQVQRY 268 (400)
Q Consensus 199 ~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~l~~~~--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~y 268 (400)
+.+|+ |..+ ..+..+|+.++ .|+.-...+... .....+..++.+|+.+.. ..+.++
T Consensus 189 ~~v~~-g~~~-----g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~--------g~l~~~ 254 (376)
T 3q7m_A 189 GAAVV-GGDN-----GRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYN--------GNLTAL 254 (376)
T ss_dssp TEEEE-CCTT-----TEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTT--------SCEEEE
T ss_pred CEEEE-EcCC-----CEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecC--------cEEEEE
Confidence 88777 3222 36889999876 476543322211 123334568888886532 268999
Q ss_pred eCCCCc--eeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCe--EEEccCCcCccCcceEEEECCE
Q psy2979 269 NPKVNQ--WQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENT--WEYKSPMKEKRYRPGIAVIDGK 344 (400)
Q Consensus 269 d~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~ 344 (400)
|+.+.+ |+.-. +. ....+..++.||+... ...+.+||+.+++ |+.-. ++ .......+..++.
T Consensus 255 d~~tG~~~w~~~~--~~---~~~~~~~~~~l~~~~~-------~g~l~~~d~~tG~~~w~~~~-~~-~~~~~~~~~~~~~ 320 (376)
T 3q7m_A 255 DLRSGQIMWKREL--GS---VNDFIVDGNRIYLVDQ-------NDRVMALTIDGGVTLWTQSD-LL-HRLLTSPVLYNGN 320 (376)
T ss_dssp ETTTCCEEEEECC--CC---EEEEEEETTEEEEEET-------TCCEEEEETTTCCEEEEECT-TT-TSCCCCCEEETTE
T ss_pred ECCCCcEEeeccC--CC---CCCceEECCEEEEEcC-------CCeEEEEECCCCcEEEeecc-cC-CCcccCCEEECCE
Confidence 987664 77532 11 2345566889998764 3479999998775 77531 11 2223344556899
Q ss_pred EEEEcCccCCCCCCCeEEEEECCCCc--EEEecCCCCCCCceeeEEEcccccc
Q psy2979 345 IYVLGGEEGWDGYHDSIECYDVDNDS--WEIMSHLPSARSWLGCVPLQIHKSQ 395 (400)
Q Consensus 345 lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~~~~ 395 (400)
||+.... ..+++||+.+++ |+.- ++........++.++.+|+
T Consensus 321 l~v~~~~-------g~l~~~d~~tG~~~~~~~--~~~~~~~~~~~~~~~~l~v 364 (376)
T 3q7m_A 321 LVVGDSE-------GYLHWINVEDGRFVAQQK--VDSSGFQTEPVAADGKLLI 364 (376)
T ss_dssp EEEECTT-------SEEEEEETTTCCEEEEEE--CCTTCBCSCCEEETTEEEE
T ss_pred EEEEeCC-------CeEEEEECCCCcEEEEEe--cCCCcceeCCEEECCEEEE
Confidence 9886532 468999999886 5542 3222233334444554443
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1.3e-05 Score=68.70 Aligned_cols=184 Identities=13% Similarity=0.049 Sum_probs=121.2
Q ss_pred eeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeC
Q psy2979 191 VSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNP 270 (400)
Q Consensus 191 ~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~ 270 (400)
..++...++.+|+..|..+ .+++.++|+.+++=..--+++......+++..+++||+.... .+.++.||+
T Consensus 45 tqGL~~~~~~LyestG~~g---~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~-------~~~v~v~D~ 114 (262)
T 3nol_A 45 TEGFFYRNGYFYESTGLNG---RSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWK-------NGLGFVWNI 114 (262)
T ss_dssp EEEEEEETTEEEEEEEETT---EEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS-------SSEEEEEET
T ss_pred cceEEEECCEEEEECCCCC---CceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEee-------CCEEEEEEC
Confidence 3556666899999998654 257899999999865555666655666788899999999766 358999999
Q ss_pred CCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEE-ccC--CcCccCcc-eEEEECCEEE
Q psy2979 271 KVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEY-KSP--MKEKRYRP-GIAVIDGKIY 346 (400)
Q Consensus 271 ~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~--~~~~~~~~-~~~~~~~~ly 346 (400)
.+.+-. ..++.+..+.+++.-++.+|+..| .+.++.+||++.+-.. ++- ...+.... .+...+|+||
T Consensus 115 ~t~~~~--~ti~~~~eG~glt~dg~~L~~SdG-------s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~ly 185 (262)
T 3nol_A 115 RNLRQV--RSFNYDGEGWGLTHNDQYLIMSDG-------TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIF 185 (262)
T ss_dssp TTCCEE--EEEECSSCCCCEEECSSCEEECCS-------SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEE
T ss_pred ccCcEE--EEEECCCCceEEecCCCEEEEECC-------CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEE
Confidence 876643 223333355667766778888876 4689999999876332 221 11111111 2344599999
Q ss_pred EEcCccCCCCCCCeEEEEECCCCc---EEEecCCCC--------CCCceeeEEEcccccccccC
Q psy2979 347 VLGGEEGWDGYHDSIECYDVDNDS---WEIMSHLPS--------ARSWLGCVPLQIHKSQFVDK 399 (400)
Q Consensus 347 v~GG~~~~~~~~~~v~~yd~~~~~---W~~~~~~~~--------~r~~~~~~~~~~~~~~~~~~ 399 (400)
+---. .+.|.+.||++++ |-.++.+.. .-.-.|.|...+..-+||=|
T Consensus 186 an~w~------~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 186 ANVWQ------TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEETT------SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEEcc------CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 75432 4689999999986 444433321 12336677776666666644
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=98.50 E-value=1.4e-05 Score=73.53 Aligned_cols=247 Identities=15% Similarity=0.131 Sum_probs=132.2
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEE-eecCEEEEEECCCCCeEEccCCCC
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCL-DIVDIVYVAASMHKILHSLGSLKF 187 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~ 187 (400)
+++++.|+.+ ..+..+|..+++....-... ..-.+++.. ++..+|+. .....+..+|+.+++....-....
T Consensus 2 ~~l~vs~~~d-----~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~ 74 (391)
T 1l0q_A 2 TFAYIANSES-----DNISVIDVTSNKVTATIPVG--SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS 74 (391)
T ss_dssp EEEEEEETTT-----TEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred CEEEEEcCCC-----CEEEEEECCCCeEEEEeecC--CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC
Confidence 4677777655 57889998887644322111 122344444 34325555 356789999998876543322222
Q ss_pred cceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe--CCEEEEEcCccccCCCCcc
Q psy2979 188 DFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH--EGMLYVTGGAILEDGDGIE 263 (400)
Q Consensus 188 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 263 (400)
.-.+++.. ++.||+.|..+ ..+.+||+.+++....-.... .-.+++.. +..+|+.++. + .
T Consensus 75 --~v~~~~~spdg~~l~~~~~~~-----~~v~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~---~----~ 138 (391)
T 1l0q_A 75 --SPQGVAVSPDGKQVYVTNMAS-----STLSVIDTTSNTVAGTVKTGK--SPLGLALSPDGKKLYVTNNG---D----K 138 (391)
T ss_dssp --SEEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETT---T----T
T ss_pred --CccceEECCCCCEEEEEECCC-----CEEEEEECCCCeEEEEEeCCC--CcceEEECCCCCEEEEEeCC---C----C
Confidence 22222222 34577765433 469999999886544322222 11233332 3457788766 3 4
Q ss_pred eEEEEeCCCCceeeccCCCCCceeeeEEEE-CC-eEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE
Q psy2979 264 QVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DS-CIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI 341 (400)
Q Consensus 264 ~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 341 (400)
.+..||..+.+....-..... ...++.. ++ .+|+.++. ...+..||+.+++....-.... ....+.+
T Consensus 139 ~v~~~d~~~~~~~~~~~~~~~--~~~~~~~~dg~~l~~~~~~------~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~ 207 (391)
T 1l0q_A 139 TVSVINTVTKAVINTVSVGRS--PKGIAVTPDGTKVYVANFD------SMSISVIDTVTNSVIDTVKVEA---APSGIAV 207 (391)
T ss_dssp EEEEEETTTTEEEEEEECCSS--EEEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEECSS---EEEEEEE
T ss_pred EEEEEECCCCcEEEEEecCCC--cceEEECCCCCEEEEEeCC------CCEEEEEECCCCeEEEEEecCC---CccceEE
Confidence 799999988775543322211 1223332 33 67677654 4689999999887554332211 1122233
Q ss_pred --CC-EEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEccccccc
Q psy2979 342 --DG-KIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQIHKSQF 396 (400)
Q Consensus 342 --~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~ 396 (400)
++ .||+.+.. . ....|.+||+.+.+-.. .++....-.+++...+..+++
T Consensus 208 ~~~g~~l~~~~~~-~---~~~~v~~~d~~~~~~~~--~~~~~~~~~~~~~s~dg~~l~ 259 (391)
T 1l0q_A 208 NPEGTKAYVTNVD-K---YFNTVSMIDTGTNKITA--RIPVGPDPAGIAVTPDGKKVY 259 (391)
T ss_dssp CTTSSEEEEEEEC-S---SCCEEEEEETTTTEEEE--EEECCSSEEEEEECTTSSEEE
T ss_pred CCCCCEEEEEecC-c---CCCcEEEEECCCCeEEE--EEecCCCccEEEEccCCCEEE
Confidence 34 55555421 0 13579999998775332 223232333444444444443
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.47 E-value=7.8e-05 Score=63.21 Aligned_cols=181 Identities=12% Similarity=0.057 Sum_probs=121.5
Q ss_pred eeeEEEECCeEEEEEee---cCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCc
Q psy2979 149 KHGLVVSGRNTIYCLDI---VDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNE 225 (400)
Q Consensus 149 ~~~~~~~~~~~iyv~~~---~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 225 (400)
-+++...++. +|+... .+.+..+|+.+++-...-+++..-...+++..+++||++...+ +.+++||+.+.+
T Consensus 23 tqGL~~~~~~-LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~-----~~v~v~D~~tl~ 96 (243)
T 3mbr_X 23 TEGLFYLRGH-LYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRN-----HEGFVYDLATLT 96 (243)
T ss_dssp EEEEEEETTE-EEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSS-----SEEEEEETTTTE
T ss_pred cccEEEECCE-EEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeC-----CEEEEEECCcCc
Confidence 3577777877 998833 3589999999998776666666666777888899999986543 679999998765
Q ss_pred eEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeec---cCCCCCc-eeeeEEEECCeEEEEc
Q psy2979 226 WSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDL---APMLIPR-SGAAICALDSCIYVLG 301 (400)
Q Consensus 226 W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~---~~~~~~r-~~~~~~~~~~~iyv~G 301 (400)
- +..++.+..+.+++.-++.+|+.-|. +.++.+||.+.+-..- ..-+.+. ..--+...+++||+--
T Consensus 97 ~--~~ti~~~~~Gwglt~dg~~L~vSdgs--------~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanv 166 (243)
T 3mbr_X 97 P--RARFRYPGEGWALTSDDSHLYMSDGT--------AVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANV 166 (243)
T ss_dssp E--EEEEECSSCCCEEEECSSCEEEECSS--------SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEE
T ss_pred E--EEEEeCCCCceEEeeCCCEEEEECCC--------CeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEE
Confidence 3 33334344667888778899998664 5899999998764322 1112121 1123445589999655
Q ss_pred CcCCCCCCCCeEEEEECCCCe---EEEccCCcC--------ccCcceEEEE---CCEEEEEcCc
Q psy2979 302 GWHASTENTNRVECYHIAENT---WEYKSPMKE--------KRYRPGIAVI---DGKIYVLGGE 351 (400)
Q Consensus 302 G~~~~~~~~~~v~~yd~~~~~---W~~~~~~~~--------~~~~~~~~~~---~~~lyv~GG~ 351 (400)
-. .+.+.+.||.+++ |..++.+.. .-......++ ++++||.|-.
T Consensus 167 w~------s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 167 WL------TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp TT------TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred CC------CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 33 6799999999986 555553321 1122334444 4788888854
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=0.00075 Score=59.04 Aligned_cols=238 Identities=9% Similarity=0.025 Sum_probs=129.3
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEee-cCEEEEEECCCCCeEEccCCCCcceeeeEEEE-CCEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDI-VDIVYVAASMHKILHSLGSLKFDFDVSGIAML-DGFV 201 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~-~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~~~i 201 (400)
..+..||+. +++..+........-++++.- ++. +|+... ...+..||+. ++............-.+++.. ++.+
T Consensus 36 ~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l 112 (299)
T 2z2n_A 36 NMISCINLD-GKITEYPLPTPDAKVMCLTISSDGE-VWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDI 112 (299)
T ss_dssp TEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCE
T ss_pred CcEEEEcCC-CCeEEecCCcccCceeeEEECCCCC-EEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCE
Confidence 467888888 776654422122233445543 456 888744 5679999986 555544321112222333333 5788
Q ss_pred EEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe-CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccC
Q psy2979 202 YAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH-EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAP 280 (400)
Q Consensus 202 yv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~ 280 (400)
|+.... ...+.+||+ +++............-.+++.. ++.+|+.... ...+.+||+ +.+.....
T Consensus 113 ~v~~~~-----~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-------~~~i~~~~~-~g~~~~~~- 177 (299)
T 2z2n_A 113 WFTEMN-----GNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ-------NNAIGRITE-SGDITEFK- 177 (299)
T ss_dssp EEEETT-----TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT-------TTEEEEECT-TCCEEEEE-
T ss_pred EEEecC-----CceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC-------CCEEEEEcC-CCcEEEee-
Confidence 886532 246889999 6665544221111112233332 6789987543 247999999 67666542
Q ss_pred CCC-CceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCC
Q psy2979 281 MLI-PRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDG 356 (400)
Q Consensus 281 ~~~-~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~ 356 (400)
.+. ...-.+++.- ++.+|+.... ...+.+||+ ++++.... .+..........+ +|+||+....
T Consensus 178 ~~~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~----- 244 (299)
T 2z2n_A 178 IPTPASGPVGITKGNDDALWFVEII------GNKIGRITT-SGEITEFK-IPTPNARPHAITAGAGIDLWFTEWG----- 244 (299)
T ss_dssp CSSTTCCEEEEEECTTSSEEEEETT------TTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECSTTCEEEEETT-----
T ss_pred CCCCCCcceeEEECCCCCEEEEccC------CceEEEECC-CCcEEEEE-CCCCCCCceeEEECCCCCEEEeccC-----
Confidence 111 1112233333 5788887643 458999999 77766542 2222222333344 5788887532
Q ss_pred CCCeEEEEECCCCcEEEecCCCC-CCCceeeEEEcccccccc
Q psy2979 357 YHDSIECYDVDNDSWEIMSHLPS-ARSWLGCVPLQIHKSQFV 397 (400)
Q Consensus 357 ~~~~v~~yd~~~~~W~~~~~~~~-~r~~~~~~~~~~~~~~~~ 397 (400)
.+.|.+||+ +++..... ++. ...-.+++. .+..+++.
T Consensus 245 -~~~i~~~d~-~g~~~~~~-~~~~~~~~~~i~~-~~g~l~v~ 282 (299)
T 2z2n_A 245 -ANKIGRLTS-NNIIEEYP-IQIKSAEPHGICF-DGETIWFA 282 (299)
T ss_dssp -TTEEEEEET-TTEEEEEE-CSSSSCCEEEEEE-CSSCEEEE
T ss_pred -CceEEEECC-CCceEEEe-CCCCCCccceEEe-cCCCEEEE
Confidence 257899999 45555442 222 122344455 55444443
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00089 Score=58.60 Aligned_cols=216 Identities=9% Similarity=0.051 Sum_probs=120.9
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEee-cCEEEEEECCCCCeEEccCCCCcceeeeEEEE-CCEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDI-VDIVYVAASMHKILHSLGSLKFDFDVSGIAML-DGFV 201 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~-~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~~~i 201 (400)
..+..||+. ++...+.........++++.. ++. +|+... ...+..||+. +++...........-.+++.. ++.+
T Consensus 41 ~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l 117 (300)
T 2qc5_A 41 NKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGD-IWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDI 117 (300)
T ss_dssp TEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCE
T ss_pred CeEEEECCC-CceEEEECCCCCCcceeEEECCCCC-EEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCE
Confidence 467888888 666654321111233445544 455 888744 5679999998 776644322111222333333 6788
Q ss_pred EEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccc-cEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceeecc
Q psy2979 202 YAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTS-PAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLA 279 (400)
Q Consensus 202 yv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~ 279 (400)
|+.... ...+.+||+. ++..... ++..... .+++. -++++|+.... ...+++||+ +.+.....
T Consensus 118 ~v~~~~-----~~~i~~~~~~-g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~-------~~~i~~~~~-~g~~~~~~ 182 (300)
T 2qc5_A 118 WFTQLN-----GDRIGKLTAD-GTIYEYD-LPNKGSYPAFITLGSDNALWFTENQ-------NNSIGRITN-TGKLEEYP 182 (300)
T ss_dssp EEEETT-----TTEEEEECTT-SCEEEEE-CSSTTCCEEEEEECTTSSEEEEETT-------TTEEEEECT-TCCEEEEE
T ss_pred EEEccC-----CCeEEEECCC-CCEEEcc-CCCCCCCceeEEECCCCCEEEEecC-------CCeEEEECC-CCcEEEee
Confidence 886432 2468899988 6655432 2211112 23333 35779987643 247999999 66665543
Q ss_pred CCCCC-ceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCC
Q psy2979 280 PMLIP-RSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWD 355 (400)
Q Consensus 280 ~~~~~-r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~ 355 (400)
++.. ..-.+++.- ++.+|+.... ...+.+||+ ++++.... .+.....+..... +|+||+....
T Consensus 183 -~~~~~~~~~~i~~d~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~---- 249 (300)
T 2qc5_A 183 -LPTNAAAPVGITSGNDGALWFVEIM------GNKIGRITT-TGEISEYD-IPTPNARPHAITAGKNSEIWFTEWG---- 249 (300)
T ss_dssp -CSSTTCCEEEEEECTTSSEEEEETT------TTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECSTTCEEEEETT----
T ss_pred -CCCCCCCcceEEECCCCCEEEEccC------CCEEEEEcC-CCcEEEEE-CCCCCCCceEEEECCCCCEEEeccC----
Confidence 2211 112233332 6789987643 457999999 56665542 2222222333344 5789887632
Q ss_pred CCCCeEEEEECCCCcEEEe
Q psy2979 356 GYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 356 ~~~~~v~~yd~~~~~W~~~ 374 (400)
.+.|.+||+ +++....
T Consensus 250 --~~~i~~~~~-~g~~~~~ 265 (300)
T 2qc5_A 250 --ANQIGRITN-DNTIQEY 265 (300)
T ss_dssp --TTEEEEECT-TSCEEEE
T ss_pred --CCeEEEECC-CCcEEEE
Confidence 257899999 5666654
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.33 E-value=9.1e-05 Score=63.39 Aligned_cols=180 Identities=8% Similarity=-0.065 Sum_probs=116.2
Q ss_pred eeEEEECCeEEEEEee---cCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCce
Q psy2979 150 HGLVVSGRNTIYCLDI---VDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEW 226 (400)
Q Consensus 150 ~~~~~~~~~~iyv~~~---~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 226 (400)
.++...++. +|+... .+.+..+|+.+++-...-+++..-...+++..+++||++...+ +.+.+||+.+.+-
T Consensus 46 qGL~~~~~~-LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~-----~~v~v~D~~t~~~ 119 (262)
T 3nol_A 46 EGFFYRNGY-FYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKN-----GLGFVWNIRNLRQ 119 (262)
T ss_dssp EEEEEETTE-EEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSS-----SEEEEEETTTCCE
T ss_pred ceEEEECCE-EEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeC-----CEEEEEECccCcE
Confidence 566666776 998833 2479999999998765555554445566788899999996533 6799999988764
Q ss_pred EEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCC---CCCcee-eeEEEECCeEEEEcC
Q psy2979 227 SYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPM---LIPRSG-AAICALDSCIYVLGG 302 (400)
Q Consensus 227 ~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~---~~~r~~-~~~~~~~~~iyv~GG 302 (400)
. ..++.+-.+.+++.-++.+|+.-|. +.++.+||.+.+-..--+. +.+... --+...+++||+---
T Consensus 120 ~--~ti~~~~eG~glt~dg~~L~~SdGs--------~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w 189 (262)
T 3nol_A 120 V--RSFNYDGEGWGLTHNDQYLIMSDGT--------PVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVW 189 (262)
T ss_dssp E--EEEECSSCCCCEEECSSCEEECCSS--------SEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEET
T ss_pred E--EEEECCCCceEEecCCCEEEEECCC--------CeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEc
Confidence 3 2333334666777778889988654 5899999998764322111 111111 124445899997543
Q ss_pred cCCCCCCCCeEEEEECCCCe---EEEccCCcCc-------cCcceEEEE---CCEEEEEcCc
Q psy2979 303 WHASTENTNRVECYHIAENT---WEYKSPMKEK-------RYRPGIAVI---DGKIYVLGGE 351 (400)
Q Consensus 303 ~~~~~~~~~~v~~yd~~~~~---W~~~~~~~~~-------~~~~~~~~~---~~~lyv~GG~ 351 (400)
. .+.+.+.||++++ |..++.+... -......++ ++++||.|-.
T Consensus 190 ~------~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 190 Q------TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp T------SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred c------CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 2 6799999999987 4444433211 122333444 4788888854
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.31 E-value=8.6e-05 Score=63.56 Aligned_cols=181 Identities=10% Similarity=0.047 Sum_probs=116.9
Q ss_pred eeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeC
Q psy2979 191 VSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNP 270 (400)
Q Consensus 191 ~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~ 270 (400)
.+++...++.||+..|..+. +.++|+.+++=..-- ++......+++..+++||+.... .+.++.||+
T Consensus 57 tqGL~~~~~~Ly~stG~~g~-----v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~-------~~~v~V~D~ 123 (268)
T 3nok_A 57 TQGLVFHQGHFFESTGHQGT-----LRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWT-------EGLLFTWSG 123 (268)
T ss_dssp EEEEEEETTEEEEEETTTTE-----EEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESS-------SCEEEEEET
T ss_pred cceEEEECCEEEEEcCCCCE-----EEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEcc-------CCEEEEEEC
Confidence 35666668999999997643 889999998643333 55555556788889999999766 358999999
Q ss_pred CCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEE-cc--CCcCccCc-ceEEEECCEEE
Q psy2979 271 KVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEY-KS--PMKEKRYR-PGIAVIDGKIY 346 (400)
Q Consensus 271 ~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~--~~~~~~~~-~~~~~~~~~ly 346 (400)
.+.+-.. .++.+..+.+++.-++.+|+..| .+.+..+||++.+-.. +. ..+.+... -.+...+|+||
T Consensus 124 ~Tl~~~~--ti~~~~eGwGLt~Dg~~L~vSdG-------s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~ly 194 (268)
T 3nok_A 124 MPPQRER--TTRYSGEGWGLCYWNGKLVRSDG-------GTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIY 194 (268)
T ss_dssp TTTEEEE--EEECSSCCCCEEEETTEEEEECS-------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEE
T ss_pred CcCcEEE--EEeCCCceeEEecCCCEEEEECC-------CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEE
Confidence 8765432 22333445677777889999876 5689999999876432 21 12222111 12334489999
Q ss_pred EEcCccCCCCCCCeEEEEECCCCc---EEEecCCC---------CCCCceeeEEEcccccccccC
Q psy2979 347 VLGGEEGWDGYHDSIECYDVDNDS---WEIMSHLP---------SARSWLGCVPLQIHKSQFVDK 399 (400)
Q Consensus 347 v~GG~~~~~~~~~~v~~yd~~~~~---W~~~~~~~---------~~r~~~~~~~~~~~~~~~~~~ 399 (400)
+---. .+.|.+.||++++ |-.++.+. ..-.--|+|...+..-+||=|
T Consensus 195 anvw~------s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 195 ANIWH------SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEETT------CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEECC------CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 64422 4689999999985 44444221 111235566665555565544
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00027 Score=61.00 Aligned_cols=183 Identities=14% Similarity=0.114 Sum_probs=113.7
Q ss_pred eeEEEEC-CEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeC
Q psy2979 192 SGIAMLD-GFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNP 270 (400)
Q Consensus 192 ~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~ 270 (400)
++++..+ +.+|+..|..+ .+++..+|+.+++=...-+++......+.+..++++|+..-. .+.+..||+
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~---~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~-------~~~v~viD~ 93 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG---RSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWL-------KNIGFIYDR 93 (266)
T ss_dssp EEEEECSTTEEEEEECSTT---TCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETT-------CSEEEEEET
T ss_pred ccEEEeCCCeEEEECCCCC---CCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEec-------CCEEEEEEC
Confidence 4555555 79999877432 367999999999755444455444555677789999999765 458999999
Q ss_pred CCCceeeccCCCCC-ceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEE-Ecc--CCcCccC-cceEEEECCEE
Q psy2979 271 KVNQWQDLAPMLIP-RSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWE-YKS--PMKEKRY-RPGIAVIDGKI 345 (400)
Q Consensus 271 ~~~~W~~~~~~~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~--~~~~~~~-~~~~~~~~~~l 345 (400)
.+.+- +..++.+ ..+.+++.-++++|+..| .+.+..+|+.+.+-. .++ ..+.+.. ...+...++++
T Consensus 94 ~t~~v--~~~i~~g~~~g~glt~Dg~~l~vs~g-------s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~l 164 (266)
T 2iwa_A 94 RTLSN--IKNFTHQMKDGWGLATDGKILYGSDG-------TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEV 164 (266)
T ss_dssp TTTEE--EEEEECCSSSCCEEEECSSSEEEECS-------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEE
T ss_pred CCCcE--EEEEECCCCCeEEEEECCCEEEEECC-------CCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEE
Confidence 87653 2222222 234455554678998765 568999999987632 222 1111111 11233348999
Q ss_pred EEEcCccCCCCCCCeEEEEECCCCc---EEEecCC---------CCCCCceeeEEEcccccccccC
Q psy2979 346 YVLGGEEGWDGYHDSIECYDVDNDS---WEIMSHL---------PSARSWLGCVPLQIHKSQFVDK 399 (400)
Q Consensus 346 yv~GG~~~~~~~~~~v~~yd~~~~~---W~~~~~~---------~~~r~~~~~~~~~~~~~~~~~~ 399 (400)
|+--.. .+.|.+.|+++++ |-.++.+ +..-.-.+++...++..+|+-|
T Consensus 165 yvn~~~------~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg 224 (266)
T 2iwa_A 165 WANIWQ------TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG 224 (266)
T ss_dssp EEEETT------SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE
T ss_pred EEecCC------CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC
Confidence 976543 4689999999875 3333321 1112236777776666666644
|
| >4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* | Back alignment and structure |
|---|
Probab=98.16 E-value=3e-06 Score=61.19 Aligned_cols=66 Identities=18% Similarity=0.230 Sum_probs=51.1
Q ss_pred eEEEE-CCeEEehhhHHHhhcCcccccc------------ceeecCCCCHHH---HHHHhh-----h---cccc---cCc
Q psy2979 20 VTLCV-DGSKFPAHRVVLAASSPYFKVL------------ETIRLPQLSPYF---LHDCVE-----Q---CAII---KNN 72 (400)
Q Consensus 20 v~l~~-~~~~~~~hr~vLaa~s~yf~~m------------~~vrl~~l~~~~---l~~~i~-----~---~~l~---~~~ 72 (400)
|+|+. ||++|++||.| |++|+||+.| ..|.|+.+++.. ++++.+ + +++- .+.
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i~~ 82 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP 82 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCCCG
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcCCH
Confidence 55665 89999999999 9999999987 258899999984 455666 2 3454 567
Q ss_pred hhHHHHHHHHHhcC
Q psy2979 73 PQCAQLVEEAKLFH 86 (400)
Q Consensus 73 ~~c~~~l~~a~~~~ 86 (400)
..+.+++.+|..++
T Consensus 83 ~~l~eLl~AAnyL~ 96 (97)
T 4ajy_C 83 EIALELLMAANFLD 96 (97)
T ss_dssp GGHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhC
Confidence 78899999997654
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00025 Score=71.81 Aligned_cols=238 Identities=12% Similarity=0.072 Sum_probs=134.8
Q ss_pred EEEEEcCCCceEEccC---CcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCC-CcceeeeEEEE-CCE
Q psy2979 127 VEGFCVKTKVWKTLSC---LPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLK-FDFDVSGIAML-DGF 200 (400)
Q Consensus 127 ~~~yd~~~~~w~~~~~---~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~-~~r~~~~~~~~-~~~ 200 (400)
+..||+.++++..+.. ++. ..-.+++.- ++. |++......++.||+.+++++...... ....-.++..- ++.
T Consensus 385 l~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~ 462 (781)
T 3v9f_A 385 INVFENGKRVAIYNKENRELLS-NSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK 462 (781)
T ss_dssp EEEEETTEEEEECC-----CCC-SBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE
T ss_pred EEEEECCCCeEEEccCCCCCCC-cceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC
Confidence 5566666555544321 111 111233333 455 777654568999999999888776421 11122223332 568
Q ss_pred EEEEcccCCCCCCCeEEEEeCCCCceEEccCCCC-c---ccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCce
Q psy2979 201 VYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKL-A---VTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQW 275 (400)
Q Consensus 201 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~-~---~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W 275 (400)
||+... ..+.+||+.+++|......+. . ..-.+++. -++.|++.... ..+.+||+.+.++
T Consensus 463 lwigt~-------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~--------~Gl~~~~~~~~~~ 527 (781)
T 3v9f_A 463 IWIGTH-------AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFG--------GGVGIYTPDMQLV 527 (781)
T ss_dssp EEEEET-------TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESS--------SCEEEECTTCCEE
T ss_pred EEEEEC-------CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcC--------CCEEEEeCCCCeE
Confidence 887432 348999999998877653321 1 11112222 36778875321 2589999999988
Q ss_pred eeccC---CCCCceeeeEEE-ECCeEEEEcCcCCCCCCCCeE-EEEECCCCeEEEccC---CcCccCcceEEEE-CCEEE
Q psy2979 276 QDLAP---MLIPRSGAAICA-LDSCIYVLGGWHASTENTNRV-ECYHIAENTWEYKSP---MKEKRYRPGIAVI-DGKIY 346 (400)
Q Consensus 276 ~~~~~---~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v-~~yd~~~~~W~~~~~---~~~~~~~~~~~~~-~~~ly 346 (400)
+.... ++.... .++.. .++.|++... .-+ .+||+.++++..... +|.... .+++.- +|.|+
T Consensus 528 ~~~~~~~~l~~~~i-~~i~~d~~g~lWi~T~--------~Glv~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lW 597 (781)
T 3v9f_A 528 RKFNQYEGFCSNTI-NQIYRSSKGQMWLATG--------EGLVCFPSARNFDYQVFQRKEGLPNTHI-RAISEDKNGNIW 597 (781)
T ss_dssp EEECTTTTCSCSCE-EEEEECTTSCEEEEET--------TEEEEESCTTTCCCEEECGGGTCSCCCC-CEEEECSSSCEE
T ss_pred EEccCCCCCCCCee-EEEEECCCCCEEEEEC--------CCceEEECCCCCcEEEccccCCCCCceE-EEEEECCCCCEE
Confidence 87652 222211 22222 2678887652 345 899999988876642 333222 223222 67888
Q ss_pred EEcCccCCCCCCCeEEEEECCCCcEEEec---CCCCCCCceeeEEEcccccccccC
Q psy2979 347 VLGGEEGWDGYHDSIECYDVDNDSWEIMS---HLPSARSWLGCVPLQIHKSQFVDK 399 (400)
Q Consensus 347 v~GG~~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~~~~~~~~ 399 (400)
+.+. +.+.+|||.+++++... .++...+..+++..+....+++||
T Consensus 598 ~~t~--------~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~ 645 (781)
T 3v9f_A 598 ASTN--------TGISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYFGS 645 (781)
T ss_dssp EECS--------SCEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEEEE
T ss_pred EEcC--------CceEEEECCCCceEEecccCCccccccccCceEECCCCEEEEEC
Confidence 8753 25899999999888764 356555555555555444444443
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00075 Score=58.26 Aligned_cols=214 Identities=18% Similarity=0.109 Sum_probs=115.2
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEEE-CCEEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML-DGFVY 202 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~~~iy 202 (400)
..+..||+.+........ ......++++.. ++. +|+......+..||+............. ..-.+++.. ++.+|
T Consensus 46 ~~i~~~~~~~~~~~~~~~-~~~~~p~~i~~~~~g~-l~v~~~~~~i~~~d~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~ 122 (270)
T 1rwi_B 46 GRVVKLATGSTGTTVLPF-NGLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQTVLPFDGL-NYPEGLAVDTQGAVY 122 (270)
T ss_dssp CEEEEECC-----EECCC-CSCCSCCCEEECTTCC-EEEEETTTEEEEECTTCSCCEECCCCSC-SSEEEEEECTTCCEE
T ss_pred CcEEEecCCCcccceEee-CCcCCcceeEECCCCC-EEEEcCCCEEEEEeCCCceEeeeecCCc-CCCcceEECCCCCEE
Confidence 467778876655443322 111222445554 456 8888556789999998776554432111 112233333 67888
Q ss_pred EEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCC
Q psy2979 203 AVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPM 281 (400)
Q Consensus 203 v~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~ 281 (400)
+.... ...+.+||..+........... ..-.+++. -++++|+.... ...+.+||+.+..-......
T Consensus 123 v~~~~-----~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~~-------~~~i~~~~~~~~~~~~~~~~ 189 (270)
T 1rwi_B 123 VADRG-----NNRVVKLAAGSKTQTVLPFTGL-NDPDGVAVDNSGNVYVTDTD-------NNRVVKLEAESNNQVVLPFT 189 (270)
T ss_dssp EEEGG-----GTEEEEECTTCCSCEECCCCSC-CSCCCEEECTTCCEEEEEGG-------GTEEEEECTTTCCEEECCCS
T ss_pred EEECC-----CCEEEEEECCCceeEeeccccC-CCceeEEEeCCCCEEEEECC-------CCEEEEEecCCCceEeeccc
Confidence 87532 2468888877665543322111 11123333 36789988654 24799999987664433211
Q ss_pred CCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCC
Q psy2979 282 LIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYH 358 (400)
Q Consensus 282 ~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~ 358 (400)
.. ..-.+++.- ++.+|+.... ...+.+||+.+..-..... .....+..+.+ +|+||+.... .
T Consensus 190 ~~-~~p~~i~~d~~g~l~v~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~p~~i~~~~~g~l~v~~~~------~ 254 (270)
T 1rwi_B 190 DI-TAPWGIAVDEAGTVYVTEHN------TNQVVKLLAGSTTSTVLPF--TGLNTPLAVAVDSDRTVYVADRG------N 254 (270)
T ss_dssp SC-CSEEEEEECTTCCEEEEETT------TSCEEEECTTCSCCEECCC--CSCSCEEEEEECTTCCEEEEEGG------G
T ss_pred CC-CCceEEEECCCCCEEEEECC------CCcEEEEcCCCCcceeecc--CCCCCceeEEECCCCCEEEEECC------C
Confidence 11 112233333 5689988753 4579999997765333221 11123334444 5789988654 3
Q ss_pred CeEEEEECCCC
Q psy2979 359 DSIECYDVDND 369 (400)
Q Consensus 359 ~~v~~yd~~~~ 369 (400)
+.|.+|++...
T Consensus 255 ~~v~~~~~~~~ 265 (270)
T 1rwi_B 255 DRVVKLTSLEH 265 (270)
T ss_dssp TEEEEECCCGG
T ss_pred CEEEEEcCCCc
Confidence 57888887543
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=0.0027 Score=55.43 Aligned_cols=193 Identities=9% Similarity=0.029 Sum_probs=109.2
Q ss_pred eeEEEE-CCeEEEEEee-cCEEEEEECCCCCeEEccCCCCcceeeeEEE-ECCEEEEEcccCCCCCCCeEEEEeCCCCce
Q psy2979 150 HGLVVS-GRNTIYCLDI-VDIVYVAASMHKILHSLGSLKFDFDVSGIAM-LDGFVYAVGGWDGSCRLDSVERYDPTKNEW 226 (400)
Q Consensus 150 ~~~~~~-~~~~iyv~~~-~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 226 (400)
++++.- ++. +|+... ...+..||+. +++...........-.+++. -++.+|+..... ..+.+||+. ++.
T Consensus 18 ~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~~~~-g~~ 89 (299)
T 2z2n_A 18 YGITVSDKGK-VWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAA-----NKIGRITKK-GII 89 (299)
T ss_dssp EEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTT-----TEEEEECTT-SCE
T ss_pred cceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCC-----CeEEEECCC-CcE
Confidence 344443 455 888744 5689999998 77766542211122223333 267888874322 358899986 555
Q ss_pred EEccCCCC-cccccEEEEe-CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCeEEEEcCc
Q psy2979 227 SYIEPMKL-AVTSPAVVAH-EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSCIYVLGGW 303 (400)
Q Consensus 227 ~~~~~l~~-~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~ 303 (400)
.... ++. ...-.+++.. ++.+|+.... ...+.+||+ +.+..............+++.- ++.+|+....
T Consensus 90 ~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~-------~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~ 160 (299)
T 2z2n_A 90 KEYT-LPNPDSAPYGITEGPNGDIWFTEMN-------GNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ 160 (299)
T ss_dssp EEEE-CSSTTCCEEEEEECTTSCEEEEETT-------TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT
T ss_pred EEEe-CCCcCCCceeeEECCCCCEEEEecC-------CceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC
Confidence 4443 221 1122233333 6889987644 237899999 5555544211111222333333 6789887632
Q ss_pred CCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEe
Q psy2979 304 HASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 304 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 374 (400)
...+.+||+ +++..... .+.....+....+ +|+||+.... ...+.+||+ ++++...
T Consensus 161 ------~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~-~g~~~~~ 218 (299)
T 2z2n_A 161 ------NNAIGRITE-SGDITEFK-IPTPASGPVGITKGNDDALWFVEII------GNKIGRITT-SGEITEF 218 (299)
T ss_dssp ------TTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECTTSSEEEEETT------TTEEEEECT-TCCEEEE
T ss_pred ------CCEEEEEcC-CCcEEEee-CCCCCCcceeEEECCCCCEEEEccC------CceEEEECC-CCcEEEE
Confidence 458999999 77766542 1211222223333 5788887643 247899999 7777664
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00064 Score=61.20 Aligned_cols=248 Identities=11% Similarity=0.067 Sum_probs=122.9
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEee---cCEEEEEECCCCCeEEccCCCCcc-eeeeEEEE-C
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDI---VDIVYVAASMHKILHSLGSLKFDF-DVSGIAML-D 198 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~---~~~~~~yd~~~~~w~~~~~~~~~r-~~~~~~~~-~ 198 (400)
-.++.+|..++++..+...........++.. ++. +|+... ...++.||..+++++.+....... .-..++.. +
T Consensus 18 i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spd 96 (347)
T 3hfq_A 18 IYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEA 96 (347)
T ss_dssp EEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETT
T ss_pred EEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCC
Confidence 3466778888887664432222222334444 556 887744 467899998777776655432111 11122222 4
Q ss_pred C-EEEEEcccCCCCCCCeEEEEeCC-CCceEEccCCCC------cc----cccEEEE-eCCEEEEEcCccccCCCCcceE
Q psy2979 199 G-FVYAVGGWDGSCRLDSVERYDPT-KNEWSYIEPMKL------AV----TSPAVVA-HEGMLYVTGGAILEDGDGIEQV 265 (400)
Q Consensus 199 ~-~iyv~GG~~~~~~~~~v~~yd~~-~~~W~~~~~l~~------~~----~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v 265 (400)
+ .||+.+..+ ..+..||.. +++...+..++. .+ .-+.++. -++++|+.+.. .+.+
T Consensus 97 g~~l~~~~~~~-----~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~-------~~~v 164 (347)
T 3hfq_A 97 RQLVYSANYHK-----GTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG-------SDKV 164 (347)
T ss_dssp TTEEEEEETTT-----TEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT-------TTEE
T ss_pred CCEEEEEeCCC-----CEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC-------CCEE
Confidence 4 577765322 457777774 334433322111 01 1112222 36678877654 2478
Q ss_pred EEEeCC-CCceeeccC--CCCC-ceeeeEEEECCe-EEEEcCcCCCCCCCCeEEEE--ECCCCeEEEccC---CcCc---
Q psy2979 266 QRYNPK-VNQWQDLAP--MLIP-RSGAAICALDSC-IYVLGGWHASTENTNRVECY--HIAENTWEYKSP---MKEK--- 332 (400)
Q Consensus 266 ~~yd~~-~~~W~~~~~--~~~~-r~~~~~~~~~~~-iyv~GG~~~~~~~~~~v~~y--d~~~~~W~~~~~---~~~~--- 332 (400)
..||.. +.+...+.. .+.. .-.+.+..-+++ +|+.+.. ...+..| +..++++..+.. .+..
T Consensus 165 ~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~------~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~ 238 (347)
T 3hfq_A 165 YVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGEL------SSQIASLKYDTQTGAFTQLGIVKTIPADYTA 238 (347)
T ss_dssp EEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT------TTEEEEEEEETTTTEEEEEEEEESSCTTCCS
T ss_pred EEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCC------CCEEEEEEecCCCCceEEeeeeeecCCCCCC
Confidence 888887 455544331 1111 111222222555 7776543 3345555 444677655432 2221
Q ss_pred cCcceEEEE--CC-EEEEEcCccCCCCCCCeEEEEECCC-CcEEEecCCCC-CCCceeeEEEcccccccc
Q psy2979 333 RYRPGIAVI--DG-KIYVLGGEEGWDGYHDSIECYDVDN-DSWEIMSHLPS-ARSWLGCVPLQIHKSQFV 397 (400)
Q Consensus 333 ~~~~~~~~~--~~-~lyv~GG~~~~~~~~~~v~~yd~~~-~~W~~~~~~~~-~r~~~~~~~~~~~~~~~~ 397 (400)
......+.+ +| .||+.+.. .+.|.+||... ++++.+..++. ...-.++++-.+..++++
T Consensus 239 ~~~~~~i~~spdG~~l~v~~~~------~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v 302 (347)
T 3hfq_A 239 HNGAAAIRLSHDGHFLYVSNRG------YNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVV 302 (347)
T ss_dssp CCEEEEEEECTTSCEEEEEEET------TTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEE
T ss_pred CCcceeEEECCCCCEEEEEeCC------CCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEE
Confidence 122333334 45 47776543 25688888763 35666654443 222234444445544444
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00094 Score=67.69 Aligned_cols=239 Identities=10% Similarity=0.133 Sum_probs=133.6
Q ss_pred eEEEEEcCCCceEEccCCc---c----cceeeeEEEECCeE-EEEEeecCEEEEEECCCCCeEEccCCCC--c-ceeeeE
Q psy2979 126 SVEGFCVKTKVWKTLSCLP---F----AISKHGLVVSGRNT-IYCLDIVDIVYVAASMHKILHSLGSLKF--D-FDVSGI 194 (400)
Q Consensus 126 ~~~~yd~~~~~w~~~~~~~---~----~~~~~~~~~~~~~~-iyv~~~~~~~~~yd~~~~~w~~~~~~~~--~-r~~~~~ 194 (400)
-+..||+.++++......+ . ...-.+++.-.+.. |++......+.+||+.++++........ + ..-.++
T Consensus 378 Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i 457 (795)
T 4a2l_A 378 GLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAI 457 (795)
T ss_dssp CEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEE
T ss_pred CeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEE
Confidence 3566777777776554211 0 11223344333443 6665555789999999988877653211 1 111222
Q ss_pred EEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCC--CCccc-c--cEEE-EeCCEEEEEcCccccCCCCcceEEE
Q psy2979 195 AML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPM--KLAVT-S--PAVV-AHEGMLYVTGGAILEDGDGIEQVQR 267 (400)
Q Consensus 195 ~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l--~~~~~-~--~~~~-~~~~~iyv~GG~~~~~~~~~~~v~~ 267 (400)
..- ++.||+... ..+.+||+.+++|+..... +.... . .++. .-++.|++.... .+.+
T Consensus 458 ~~d~~g~lwigt~-------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~---------Gl~~ 521 (795)
T 4a2l_A 458 LPDGEGNLWLGTL-------SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGEE---------GLSV 521 (795)
T ss_dssp EECSSSCEEEEES-------SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEESS---------CEEE
T ss_pred EECCCCCEEEEec-------CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeCC---------ceEE
Confidence 222 567777532 2489999999999887532 11111 1 1222 236778875432 5899
Q ss_pred EeCCCCceeeccCC---C-CCc-eeeeEEE-ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccC---CcCccCcceE
Q psy2979 268 YNPKVNQWQDLAPM---L-IPR-SGAAICA-LDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSP---MKEKRYRPGI 338 (400)
Q Consensus 268 yd~~~~~W~~~~~~---~-~~r-~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~---~~~~~~~~~~ 338 (400)
||+.++++ ..... + .+. ...+++. .++.|++... .-+.+||+.++++..... +|... ...
T Consensus 522 ~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~--------~Gl~~~d~~~~~~~~~~~~~gl~~~~--i~~ 590 (795)
T 4a2l_A 522 FKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR--------EGFYCFNEKDKQIKRYNTTNGLPNNV--VYG 590 (795)
T ss_dssp EEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES--------SCEEEEETTTTEEEEECGGGTCSCSC--EEE
T ss_pred EeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC--------CCceeECCCCCcEEEeCCCCCCchhh--eEE
Confidence 99988888 43211 1 111 1122222 2678887552 358999999999887642 33221 112
Q ss_pred EEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEec---CCCCCCCceeeEEEcccccccccC
Q psy2979 339 AVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMS---HLPSARSWLGCVPLQIHKSQFVDK 399 (400)
Q Consensus 339 ~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~~~~~~~~ 399 (400)
... +|.|++.+. +.+.+|||++++++... .++...+...++..+....+++||
T Consensus 591 i~~d~~g~lWi~t~--------~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~ 648 (795)
T 4a2l_A 591 ILEDSFGRLWLSTN--------RGISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVGQMYFGG 648 (795)
T ss_dssp EEECTTSCEEEEET--------TEEEEEETTTTEEEEECGGGTCSCSCEEEEEEEECTTSCEEEEE
T ss_pred EEECCCCCEEEEcC--------CceEEEcCCCCcEEEcCCcCCCccccCccCceeECCCCeEEEec
Confidence 223 578888763 36889999999988764 355555544444444444444443
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00026 Score=64.84 Aligned_cols=225 Identities=12% Similarity=0.088 Sum_probs=121.4
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEe-ecCEEEEEECCCCCeEEccCCCC
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLD-IVDIVYVAASMHKILHSLGSLKF 187 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~-~~~~~~~yd~~~~~w~~~~~~~~ 187 (400)
..+++.++.+ ..+..+|..+++....-..+. .-.+++.. ++..+|+.. ....+..+|+.+++....-...
T Consensus 44 ~~l~~~~~~d-----~~i~v~d~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~- 115 (391)
T 1l0q_A 44 TKVYVANAHS-----NDVSIIDTATNNVIATVPAGS--SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG- 115 (391)
T ss_dssp SEEEEEEGGG-----TEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-
T ss_pred CEEEEECCCC-----CeEEEEECCCCeEEEEEECCC--CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-
Confidence 3566666543 478899998877543322222 22344444 333255553 3478999999887654332221
Q ss_pred cceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe--CCEEEEEcCccccCCCCcc
Q psy2979 188 DFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH--EGMLYVTGGAILEDGDGIE 263 (400)
Q Consensus 188 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 263 (400)
....+++.. ++.+|+.++.+ ..+..||+.+++....-...... ..++.. ++.+|+.++. + .
T Consensus 116 -~~~~~~~~s~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~--~~~~~~~dg~~l~~~~~~---~----~ 180 (391)
T 1l0q_A 116 -KSPLGLALSPDGKKLYVTNNGD-----KTVSVINTVTKAVINTVSVGRSP--KGIAVTPDGTKVYVANFD---S----M 180 (391)
T ss_dssp -SSEEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEECCSSE--EEEEECTTSSEEEEEETT---T----T
T ss_pred -CCcceEEECCCCCEEEEEeCCC-----CEEEEEECCCCcEEEEEecCCCc--ceEEECCCCCEEEEEeCC---C----C
Confidence 122233332 34677776543 46999999888765432222111 222222 3467777765 3 4
Q ss_pred eEEEEeCCCCceeeccCCCCCceeeeEEEE-CC-eEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE
Q psy2979 264 QVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DS-CIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI 341 (400)
Q Consensus 264 ~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 341 (400)
.+..||..+.+....-... .....++.. ++ .+|+.+. +.. ...+..||+.+.+-...- +.... ...+.+
T Consensus 181 ~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~~g~~l~~~~~-~~~---~~~v~~~d~~~~~~~~~~--~~~~~-~~~~~~ 251 (391)
T 1l0q_A 181 SISVIDTVTNSVIDTVKVE--AAPSGIAVNPEGTKAYVTNV-DKY---FNTVSMIDTGTNKITARI--PVGPD-PAGIAV 251 (391)
T ss_dssp EEEEEETTTTEEEEEEECS--SEEEEEEECTTSSEEEEEEE-CSS---CCEEEEEETTTTEEEEEE--ECCSS-EEEEEE
T ss_pred EEEEEECCCCeEEEEEecC--CCccceEECCCCCEEEEEec-CcC---CCcEEEEECCCCeEEEEE--ecCCC-ccEEEE
Confidence 7999999887654332221 122222222 44 4554442 111 468999999887643322 21111 222333
Q ss_pred ---CCEEEEEcCccCCCCCCCeEEEEECCCCcEE
Q psy2979 342 ---DGKIYVLGGEEGWDGYHDSIECYDVDNDSWE 372 (400)
Q Consensus 342 ---~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~ 372 (400)
+..||+.++. + ..+.+||..+++-.
T Consensus 252 s~dg~~l~~s~~~-d-----~~v~v~d~~~~~~~ 279 (391)
T 1l0q_A 252 TPDGKKVYVALSF-X-----NTVSVIDTATNTIT 279 (391)
T ss_dssp CTTSSEEEEEETT-T-----TEEEEEETTTTEEE
T ss_pred ccCCCEEEEEcCC-C-----CEEEEEECCCCcEE
Confidence 3467777665 2 57889999886543
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=0.0033 Score=56.33 Aligned_cols=243 Identities=11% Similarity=-0.026 Sum_probs=129.3
Q ss_pred cceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEE-eecCEEEEEECCCCCeEEccCCCCc--------ceeee
Q psy2979 124 LRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCL-DIVDIVYVAASMHKILHSLGSLKFD--------FDVSG 193 (400)
Q Consensus 124 ~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~--------r~~~~ 193 (400)
...+..+|+.+++....-.. ....++++.. ++..+|+. .....+..+|+.+++-...-+.... ..-..
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHN--DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRE 145 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEE--SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEE
T ss_pred CccEEEEcCCCCeEEEEEec--CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCce
Confidence 45788999988764432211 1122344444 33327776 3346899999988774332222111 11222
Q ss_pred EEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccC-CCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeC
Q psy2979 194 IAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEP-MKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNP 270 (400)
Q Consensus 194 ~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~ 270 (400)
++.. ++.+|+.+... ...+..||+.+.+-...-+ ........+...-++.+|+.... ..+..||+
T Consensus 146 ~~~s~dg~~l~~~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--------~~i~~~d~ 213 (353)
T 3vgz_A 146 LVADDATNTVYISGIGK----ESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNAD--------GELITIDT 213 (353)
T ss_dssp EEEETTTTEEEEEEESS----SCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTT--------SEEEEEET
T ss_pred EEECCCCCEEEEEecCC----CceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCC--------CeEEEEEC
Confidence 3332 45688776221 2469999998876443322 11111122222234567766442 37889999
Q ss_pred CCCceeeccCCCC--Cce-eeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE-C-C
Q psy2979 271 KVNQWQDLAPMLI--PRS-GAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI-D-G 343 (400)
Q Consensus 271 ~~~~W~~~~~~~~--~r~-~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~-~ 343 (400)
.+.+-...-+.+. +.. ..+++.. ++.+|+.+.. ...+..||+.+++....-+.+.+ .+++.. + +
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------~~~v~~~d~~~~~~~~~~~~~~~---~~~~~s~dg~ 284 (353)
T 3vgz_A 214 ADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK------AAEVLVVDTRNGNILAKVAAPES---LAVLFNPARN 284 (353)
T ss_dssp TTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS------SSEEEEEETTTCCEEEEEECSSC---CCEEEETTTT
T ss_pred CCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC------CCEEEEEECCCCcEEEEEEcCCC---ceEEECCCCC
Confidence 8776433222211 112 2223333 4457776643 46899999988875443333332 223222 4 4
Q ss_pred EEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEcccccccc
Q psy2979 344 KIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQIHKSQFV 397 (400)
Q Consensus 344 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~ 397 (400)
.+|+.+.. .+.|.+||+.+.+.... ++.+..-.++++..+..++++
T Consensus 285 ~l~v~~~~------~~~v~~~d~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~v 330 (353)
T 3vgz_A 285 EAYVTHRQ------AGKVSVIDAKSYKVVKT--FDTPTHPNSLALSADGKTLYV 330 (353)
T ss_dssp EEEEEETT------TTEEEEEETTTTEEEEE--EECCSEEEEEEECTTSCEEEE
T ss_pred EEEEEECC------CCeEEEEECCCCeEEEE--EecCCCCCeEEEcCCCCEEEE
Confidence 58887654 25799999988765443 333334455566556555554
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=0.004 Score=54.19 Aligned_cols=199 Identities=10% Similarity=0.086 Sum_probs=107.8
Q ss_pred eEEEE-CCeEEEEE-eecCEEEEEECCCCCeEEccCCC---C-cceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCC
Q psy2979 151 GLVVS-GRNTIYCL-DIVDIVYVAASMHKILHSLGSLK---F-DFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPT 222 (400)
Q Consensus 151 ~~~~~-~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~---~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 222 (400)
++++. ++. +|+. .....+..||+.......++... . ...-.+++.. ++.+|+.+... ...+.+||+.
T Consensus 34 ~v~~~~~g~-l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~----~~~i~~~d~~ 108 (286)
T 1q7f_A 34 GVAVNAQND-IIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP----THQIQIYNQY 108 (286)
T ss_dssp EEEECTTCC-EEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG----GCEEEEECTT
T ss_pred eEEECCCCC-EEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC----CCEEEEECCC
Confidence 34443 455 7877 34567889998754433333211 0 1122344442 67899886321 2468899965
Q ss_pred CCceEEccCCCCcccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCeEEEE
Q psy2979 223 KNEWSYIEPMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSCIYVL 300 (400)
Q Consensus 223 ~~~W~~~~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~ 300 (400)
...-..+.. +....-..++. -++++|+.... ...+.+||+.......+........-.+++.- ++.+|+.
T Consensus 109 g~~~~~~~~-~~~~~~~~i~~~~~g~l~v~~~~-------~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~ 180 (286)
T 1q7f_A 109 GQFVRKFGA-TILQHPRGVTVDNKGRIIVVECK-------VMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFIS 180 (286)
T ss_dssp SCEEEEECT-TTCSCEEEEEECTTSCEEEEETT-------TTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred CcEEEEecC-ccCCCceEEEEeCCCCEEEEECC-------CCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEE
Confidence 544333322 11111123333 36789998654 24799999876654444211111111233333 6789988
Q ss_pred cCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEe
Q psy2979 301 GGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 301 GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 374 (400)
+.. ...+.+||+.......+.... ....+...++ +|++|+.... . ...|.+||+....-..+
T Consensus 181 ~~~------~~~i~~~~~~g~~~~~~~~~g-~~~~p~~i~~d~~G~l~v~~~~-~----~~~i~~~~~~g~~~~~~ 244 (286)
T 1q7f_A 181 DNR------AHCVKVFNYEGQYLRQIGGEG-ITNYPIGVGINSNGEILIADNH-N----NFNLTIFTQDGQLISAL 244 (286)
T ss_dssp EGG------GTEEEEEETTCCEEEEESCTT-TSCSEEEEEECTTCCEEEEECS-S----SCEEEEECTTSCEEEEE
T ss_pred ECC------CCEEEEEcCCCCEEEEEccCC-ccCCCcEEEECCCCCEEEEeCC-C----CEEEEEECCCCCEEEEE
Confidence 654 468999999766554443211 1122333344 6789998754 1 12799999876554444
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0023 Score=57.04 Aligned_cols=259 Identities=11% Similarity=0.065 Sum_probs=125.3
Q ss_pred cEEEEEeccCCCcccceEEEEEcC-CCceEEccCCcccceeeeEEEE-CCeEEEEEeec-CEEEEEECC--CCCeEEccC
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVK-TKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIV-DIVYVAASM--HKILHSLGS 184 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~-~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~-~~~~~yd~~--~~~w~~~~~ 184 (400)
+.+++.++.+ ..+..||.. +++...+..++....-.+++.. ++..+|+.... ..+..|+.. ++++..+..
T Consensus 5 ~~l~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~ 79 (343)
T 1ri6_A 5 QTVYIASPES-----QQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE 79 (343)
T ss_dssp EEEEEEEGGG-----TEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred EEEEEeCCCC-----CeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccc
Confidence 5666664433 467778764 4444443333322223334443 33326665433 677777765 677776554
Q ss_pred CCCcceeeeEEEE-CC-EEEEEcccCCCCCCCeEEEEeCCCC-ceEEccCCCCcccccEEEE-e-CCEEEEEcCccccCC
Q psy2979 185 LKFDFDVSGIAML-DG-FVYAVGGWDGSCRLDSVERYDPTKN-EWSYIEPMKLAVTSPAVVA-H-EGMLYVTGGAILEDG 259 (400)
Q Consensus 185 ~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~~l~~~~~~~~~~~-~-~~~iyv~GG~~~~~~ 259 (400)
++.+..-..++.. ++ .+|+.+..+ ..+..||+..+ +......++....-+.++. - +..+|+.+..
T Consensus 80 ~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~----- 149 (343)
T 1ri6_A 80 SALPGSLTHISTDHQGQFVFVGSYNA-----GNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK----- 149 (343)
T ss_dssp EECSSCCSEEEECTTSSEEEEEETTT-----TEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG-----
T ss_pred cccCCCCcEEEEcCCCCEEEEEecCC-----CeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCC-----
Confidence 4322222222222 33 566654322 45778887422 2222222221111222222 2 3467776633
Q ss_pred CCcceEEEEeCCC-Cceeecc----CCCCCceeeeEEEE-CC-eEEEEcCcCCCCCCCCeEEEEECC--CCeEEE---cc
Q psy2979 260 DGIEQVQRYNPKV-NQWQDLA----PMLIPRSGAAICAL-DS-CIYVLGGWHASTENTNRVECYHIA--ENTWEY---KS 327 (400)
Q Consensus 260 ~~~~~v~~yd~~~-~~W~~~~----~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~--~~~W~~---~~ 327 (400)
...+..||..+ .+...+. ..+....-..++.. ++ .+|+.+.. ...+..||.. ++++.. +.
T Consensus 150 --~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~------~~~i~~~~~~~~~g~~~~~~~~~ 221 (343)
T 1ri6_A 150 --QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL------NSSVDVWELKDPHGNIECVQTLD 221 (343)
T ss_dssp --GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT------TTEEEEEESSCTTSCCEEEEEEE
T ss_pred --CCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC------CCEEEEEEecCCCCcEEEEeecc
Confidence 24789999877 5554322 11111111122222 44 47777643 4578888884 344432 23
Q ss_pred CCcCc---cCcceEEEE--CC-EEEEEcCccCCCCCCCeEEEEECC--CCcEEEecCCCCCCCceeeEEEcccccccc
Q psy2979 328 PMKEK---RYRPGIAVI--DG-KIYVLGGEEGWDGYHDSIECYDVD--NDSWEIMSHLPSARSWLGCVPLQIHKSQFV 397 (400)
Q Consensus 328 ~~~~~---~~~~~~~~~--~~-~lyv~GG~~~~~~~~~~v~~yd~~--~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~ 397 (400)
..+.. ......+.+ ++ .||+.+.. ...+.+||+. +++++.+..++....-.+++.-.+..++++
T Consensus 222 ~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~------~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 293 (343)
T 1ri6_A 222 MMPENFSDTRWAADIHITPDGRHLYACDRT------ASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIA 293 (343)
T ss_dssp CSCTTCCSCCCEEEEEECTTSSEEEEEETT------TTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEE
T ss_pred ccCccccccCCccceEECCCCCEEEEEecC------CCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEE
Confidence 33322 112223334 34 67766543 2468888887 566777755544333334444444444443
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0043 Score=54.09 Aligned_cols=193 Identities=8% Similarity=0.048 Sum_probs=108.6
Q ss_pred eeEEEE-CCeEEEEEe-ecCEEEEEECCCCCeEEccCCCCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCce
Q psy2979 150 HGLVVS-GRNTIYCLD-IVDIVYVAASMHKILHSLGSLKFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEW 226 (400)
Q Consensus 150 ~~~~~~-~~~~iyv~~-~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 226 (400)
++++.- ++. +|+.. ....+..||+. ++............-.+++.. ++.+|+.... ...+.+||+. +++
T Consensus 23 ~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-----~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 23 YGITSSEDGK-VWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENG-----ANKIGKLSKK-GGF 94 (300)
T ss_dssp EEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETT-----TTEEEEECTT-SCE
T ss_pred ceeeECCCCC-EEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecC-----CCeEEEECCC-CCe
Confidence 344443 456 88884 45789999998 776654321111122233332 5688886432 2468999998 766
Q ss_pred EEccCCCCcccccEEEEe-CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCC-CceeeeEEE-ECCeEEEEcCc
Q psy2979 227 SYIEPMKLAVTSPAVVAH-EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLI-PRSGAAICA-LDSCIYVLGGW 303 (400)
Q Consensus 227 ~~~~~l~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~r~~~~~~~-~~~~iyv~GG~ 303 (400)
...........-++++.. ++.+|+.... ...+.+||+. .+..... ++. ...-.+++. -++++|+....
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-------~~~i~~~~~~-g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~ 165 (300)
T 2qc5_A 95 TEYPLPQPDSGPYGITEGLNGDIWFTQLN-------GDRIGKLTAD-GTIYEYD-LPNKGSYPAFITLGSDNALWFTENQ 165 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEETT-------TTEEEEECTT-SCEEEEE-CSSTTCCEEEEEECTTSSEEEEETT
T ss_pred EEecCCCCCCCCccceECCCCCEEEEccC-------CCeEEEECCC-CCEEEcc-CCCCCCCceeEEECCCCCEEEEecC
Confidence 544321111222233332 6889987653 2379999987 5554432 221 112223333 26788887643
Q ss_pred CCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEe
Q psy2979 304 HASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 304 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 374 (400)
...+.+||+ +++..... .+..........+ +|.||+.... ...+.+||+ ++++...
T Consensus 166 ------~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~------~~~i~~~~~-~g~~~~~ 223 (300)
T 2qc5_A 166 ------NNSIGRITN-TGKLEEYP-LPTNAAAPVGITSGNDGALWFVEIM------GNKIGRITT-TGEISEY 223 (300)
T ss_dssp ------TTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECTTSSEEEEETT------TTEEEEECT-TCCEEEE
T ss_pred ------CCeEEEECC-CCcEEEee-CCCCCCCcceEEECCCCCEEEEccC------CCEEEEEcC-CCcEEEE
Confidence 457999999 66666543 2222222333334 5789887532 246899999 6666655
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0046 Score=53.28 Aligned_cols=191 Identities=12% Similarity=0.061 Sum_probs=118.1
Q ss_pred eeEEEEC-CeEEEEEee---cCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCc
Q psy2979 150 HGLVVSG-RNTIYCLDI---VDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNE 225 (400)
Q Consensus 150 ~~~~~~~-~~~iyv~~~---~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 225 (400)
++++..+ +. +|+... .+.+..+|+.+++-...-+++......+++..+++||+..-. .+.+.+||+.+.+
T Consensus 24 ~Gl~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~-----~~~v~viD~~t~~ 97 (266)
T 2iwa_A 24 QGLVYAENDT-LFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWL-----KNIGFIYDRRTLS 97 (266)
T ss_dssp EEEEECSTTE-EEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETT-----CSEEEEEETTTTE
T ss_pred ccEEEeCCCe-EEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEec-----CCEEEEEECCCCc
Confidence 6777666 55 898743 578999999999866544444434555677778999998543 2579999998764
Q ss_pred eEEccCCCCc-ccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceee-cc--CCCCCc-eeeeEEEECCeEEEE
Q psy2979 226 WSYIEPMKLA-VTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQD-LA--PMLIPR-SGAAICALDSCIYVL 300 (400)
Q Consensus 226 W~~~~~l~~~-~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~-~~--~~~~~r-~~~~~~~~~~~iyv~ 300 (400)
= +..++.+ -.+.+++.-++.+|+..|. +.+..+|+.+.+-.. ++ .-+.+. .-..+...++++|+-
T Consensus 98 v--~~~i~~g~~~g~glt~Dg~~l~vs~gs--------~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn 167 (266)
T 2iwa_A 98 N--IKNFTHQMKDGWGLATDGKILYGSDGT--------SILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWAN 167 (266)
T ss_dssp E--EEEEECCSSSCCEEEECSSSEEEECSS--------SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEE
T ss_pred E--EEEEECCCCCeEEEEECCCEEEEECCC--------CeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEe
Confidence 3 3223322 3445666667789987653 589999998876332 22 111111 112333448899977
Q ss_pred cCcCCCCCCCCeEEEEECCCCe---EEEccCCcC--------ccCcceEEEE---CCEEEEEcCccCCCCCCCeEEEEEC
Q psy2979 301 GGWHASTENTNRVECYHIAENT---WEYKSPMKE--------KRYRPGIAVI---DGKIYVLGGEEGWDGYHDSIECYDV 366 (400)
Q Consensus 301 GG~~~~~~~~~~v~~yd~~~~~---W~~~~~~~~--------~~~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~ 366 (400)
-.. .+.+.+.|+.+++ |..++.+.. ........++ ++++||.|+. -+.+++.+.
T Consensus 168 ~~~------~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~------~~~v~~i~l 235 (266)
T 2iwa_A 168 IWQ------TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL------WPKLFEIKL 235 (266)
T ss_dssp ETT------SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT------CSEEEEEEE
T ss_pred cCC------CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCC------CCeEEEEEE
Confidence 543 5799999999986 443332100 0112233333 4689999976 356666665
Q ss_pred CC
Q psy2979 367 DN 368 (400)
Q Consensus 367 ~~ 368 (400)
..
T Consensus 236 ~~ 237 (266)
T 2iwa_A 236 HL 237 (266)
T ss_dssp EE
T ss_pred ec
Confidence 43
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.001 Score=59.34 Aligned_cols=233 Identities=12% Similarity=0.094 Sum_probs=119.6
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEee-cCEEEEEECCCCCe-E-EccCC
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDI-VDIVYVAASMHKIL-H-SLGSL 185 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~-~~~~~~yd~~~~~w-~-~~~~~ 185 (400)
+.+++....+ ..+..+|+.+++.......+.... +++.. ++..+|+... ...++.+|+.+++. . .+...
T Consensus 10 ~~~~v~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~--~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 82 (331)
T 3u4y_A 10 NFGIVVEQHL-----RRISFFSTDTLEILNQITLGYDFV--DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG 82 (331)
T ss_dssp CEEEEEEGGG-----TEEEEEETTTCCEEEEEECCCCEE--EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred CEEEEEecCC-----CeEEEEeCcccceeeeEEccCCcc--eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence 5667765543 588899999988765433332212 44443 3433776633 56899999988774 2 22221
Q ss_pred CCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe-CC-EEEEEcCccccCCCC
Q psy2979 186 KFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH-EG-MLYVTGGAILEDGDG 261 (400)
Q Consensus 186 ~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~-~~-~iyv~GG~~~~~~~~ 261 (400)
..+.. +++.. ++.+| .+... .....+..||+.+++....-+.. ...+.++.. ++ .+|+.+.. +
T Consensus 83 ~~~~~--~~~~s~dg~~l~-~~~~~--~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~spdg~~l~~~~~~---~--- 149 (331)
T 3u4y_A 83 QSSMA--DVDITPDDQFAV-TVTGL--NHPFNMQSYSFLKNKFISTIPIP--YDAVGIAISPNGNGLILIDRS---S--- 149 (331)
T ss_dssp SSCCC--CEEECTTSSEEE-ECCCS--SSSCEEEEEETTTTEEEEEEECC--TTEEEEEECTTSSCEEEEEET---T---
T ss_pred CCCcc--ceEECCCCCEEE-EecCC--CCcccEEEEECCCCCeEEEEECC--CCccceEECCCCCEEEEEecC---C---
Confidence 22221 12222 34566 33221 11237999999988754432221 112333332 44 58877554 2
Q ss_pred cce-EEEEeCCCCc-eeec--cCCCCCceeeeEEEE-CC-eEEEEcCcCCCCCCCCeEEEEECCCCeE-EEccCCcCccC
Q psy2979 262 IEQ-VQRYNPKVNQ-WQDL--APMLIPRSGAAICAL-DS-CIYVLGGWHASTENTNRVECYHIAENTW-EYKSPMKEKRY 334 (400)
Q Consensus 262 ~~~-v~~yd~~~~~-W~~~--~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~~~ 334 (400)
.. +..|+...+. .... ..++.......++.. ++ .+|+.+.. ...+..||+.+++. ..+..++....
T Consensus 150 -~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~------~~~v~v~d~~~~~~~~~~~~~~~~~~ 222 (331)
T 3u4y_A 150 -ANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLI------GNSIGILETQNPENITLLNAVGTNNL 222 (331)
T ss_dssp -TTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETT------TTEEEEEECSSTTSCEEEEEEECSSC
T ss_pred -CceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCC------CCeEEEEECCCCcccceeeeccCCCC
Confidence 24 6666654322 1111 111111111223322 45 47777644 46899999987764 11222222222
Q ss_pred cceEEEE-CCE-EEEEcCccCCCCCCCeEEEEECCCCcEEEec
Q psy2979 335 RPGIAVI-DGK-IYVLGGEEGWDGYHDSIECYDVDNDSWEIMS 375 (400)
Q Consensus 335 ~~~~~~~-~~~-lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 375 (400)
...++.. +|+ +|+.... .+.|.+||+++++.+.+.
T Consensus 223 ~~~~~~spdg~~l~v~~~~------~~~i~~~d~~~~~~~~~~ 259 (331)
T 3u4y_A 223 PGTIVVSRDGSTVYVLTES------TVDVFNFNQLSGTLSFVK 259 (331)
T ss_dssp CCCEEECTTSSEEEEECSS------EEEEEEEETTTTEEEEEE
T ss_pred CceEEECCCCCEEEEEEcC------CCEEEEEECCCCceeeec
Confidence 2223222 454 7776543 246899999998875553
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00038 Score=64.72 Aligned_cols=245 Identities=11% Similarity=0.015 Sum_probs=127.6
Q ss_pred eEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEE-eecCEEEEEECCCCCeEEccCCC---CcceeeeEEEE--C
Q psy2979 126 SVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCL-DIVDIVYVAASMHKILHSLGSLK---FDFDVSGIAML--D 198 (400)
Q Consensus 126 ~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~---~~r~~~~~~~~--~ 198 (400)
.++.+|+.++++..+..++......+++.. ++. +++. .....+..+|+.+++.....+.. .+........+ +
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~ 180 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTGFQPKSVRFIDNTR-LAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEH 180 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECSSCBCCCEESSSSE-EEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGG
T ss_pred EEEEECCCCCcceEEEEEcCCCCceEEEEeCCCe-EEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCC
Confidence 677788877766555444333322344444 344 6665 33346999999988766533321 11111112222 6
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe--CCEEEEEcCccccCCCCcceEEEEeCCCCcee
Q psy2979 199 GFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH--EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQ 276 (400)
Q Consensus 199 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~ 276 (400)
+.+++.|+.+ ..+..||+.+++....-.... ..-.+++.. ++.+|+.++. + ..+..||+.+.+..
T Consensus 181 ~~~~~s~~~d-----~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~---~----~~i~~~d~~~~~~~ 247 (433)
T 3bws_A 181 NELWVSQMQA-----NAVHVFDLKTLAYKATVDLTG-KWSKILLYDPIRDLVYCSNWI---S----EDISVIDRKTKLEI 247 (433)
T ss_dssp TEEEEEEGGG-----TEEEEEETTTCCEEEEEECSS-SSEEEEEEETTTTEEEEEETT---T----TEEEEEETTTTEEE
T ss_pred CEEEEEECCC-----CEEEEEECCCceEEEEEcCCC-CCeeEEEEcCCCCEEEEEecC---C----CcEEEEECCCCcEE
Confidence 7888887754 468999998765433211111 111122222 4567777765 3 37999999877654
Q ss_pred eccCCCCCceeeeEEEE-CCeEEEEcCcCCCCC--CCCeEEEEECCCCeEEEccCCcCccCcceEEEE--C-CEEEEEcC
Q psy2979 277 DLAPMLIPRSGAAICAL-DSCIYVLGGWHASTE--NTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--D-GKIYVLGG 350 (400)
Q Consensus 277 ~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~--~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~-~~lyv~GG 350 (400)
..-+ ......+++.. +++.+++++...... ....+..||+.+++-......+. ....+.+ + +.+|+.++
T Consensus 248 ~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~ 322 (433)
T 3bws_A 248 RKTD--KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG---NKRHIVSGNTENKIYVSDM 322 (433)
T ss_dssp EECC--CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE---CEEEEEECSSTTEEEEEET
T ss_pred EEec--CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC---CcceEEECCCCCEEEEEec
Confidence 3322 22222333332 554444444322111 03589999998886543321111 1122233 3 46888876
Q ss_pred ccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEcccccccc
Q psy2979 351 EEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQIHKSQFV 397 (400)
Q Consensus 351 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~ 397 (400)
. ...+.+||+.+++-.. .++....-.+++.-.+..++++
T Consensus 323 ~------~~~v~v~d~~~~~~~~--~~~~~~~~~~~~~s~dg~~l~~ 361 (433)
T 3bws_A 323 C------CSKIEVYDLKEKKVQK--SIPVFDKPNTIALSPDGKYLYV 361 (433)
T ss_dssp T------TTEEEEEETTTTEEEE--EEECSSSEEEEEECTTSSEEEE
T ss_pred C------CCEEEEEECCCCcEEE--EecCCCCCCeEEEcCCCCEEEE
Confidence 5 2478999998765332 2232323334444444444443
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0062 Score=54.16 Aligned_cols=244 Identities=9% Similarity=-0.001 Sum_probs=122.0
Q ss_pred ceEEEEEcC--CCceEEccCCcccceeeeEEEE-CCeEEEEEee-cCEEEEEECCCCC-eEEccCCCCcceeeeEEEE-C
Q psy2979 125 RSVEGFCVK--TKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDI-VDIVYVAASMHKI-LHSLGSLKFDFDVSGIAML-D 198 (400)
Q Consensus 125 ~~~~~yd~~--~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~-~~~~~~yd~~~~~-w~~~~~~~~~r~~~~~~~~-~ 198 (400)
..+..|+.. ++++..+..++.......++.. ++..+|+... ...+..||...+. .......+....-..++.. +
T Consensus 60 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~d 139 (343)
T 1ri6_A 60 FRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPD 139 (343)
T ss_dssp TEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTT
T ss_pred CeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCC
Confidence 467777765 6677655443322222334443 3332555533 4567888873221 2222222211112222222 3
Q ss_pred -CEEEEEcccCCCCCCCeEEEEeCCC-CceEEcc----CCCCcccccEEEE-eCC-EEEEEcCccccCCCCcceEEEEeC
Q psy2979 199 -GFVYAVGGWDGSCRLDSVERYDPTK-NEWSYIE----PMKLAVTSPAVVA-HEG-MLYVTGGAILEDGDGIEQVQRYNP 270 (400)
Q Consensus 199 -~~iyv~GG~~~~~~~~~v~~yd~~~-~~W~~~~----~l~~~~~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~v~~yd~ 270 (400)
+.+|+.+..+ ..+..||..+ ++..... ..+....-..++. -++ .+|+.+.. ...+..||.
T Consensus 140 g~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~-------~~~i~~~~~ 207 (343)
T 1ri6_A 140 NRTLWVPALKQ-----DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL-------NSSVDVWEL 207 (343)
T ss_dssp SSEEEEEEGGG-----TEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT-------TTEEEEEES
T ss_pred CCEEEEecCCC-----CEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC-------CCEEEEEEe
Confidence 3677765222 4688899887 6665432 1121111112222 244 57777654 247888887
Q ss_pred C--CCceee---ccCCCCC---ceee-eEEEE-CC-eEEEEcCcCCCCCCCCeEEEEECC--CCeEEEccCCcCccCcce
Q psy2979 271 K--VNQWQD---LAPMLIP---RSGA-AICAL-DS-CIYVLGGWHASTENTNRVECYHIA--ENTWEYKSPMKEKRYRPG 337 (400)
Q Consensus 271 ~--~~~W~~---~~~~~~~---r~~~-~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~--~~~W~~~~~~~~~~~~~~ 337 (400)
. +..+.. +..++.. .... .++.. ++ .+|+.+.. ...+..||.. ++++..+...+.... ..
T Consensus 208 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~------~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~ 280 (343)
T 1ri6_A 208 KDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT------ASLITVFSVSEDGSVLSKEGFQPTETQ-PR 280 (343)
T ss_dssp SCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT------TTEEEEEEECTTSCCEEEEEEEECSSS-CC
T ss_pred cCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecC------CCEEEEEEEcCCCCceEEeeeecCCCc-cc
Confidence 4 344432 2223322 1111 22222 34 56666543 4578888877 556766655443333 22
Q ss_pred EEEE--CC-EEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEcc
Q psy2979 338 IAVI--DG-KIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQI 391 (400)
Q Consensus 338 ~~~~--~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 391 (400)
.+.+ ++ .||+.++. ++ .-.+|.+|+++++++.+..++.+..-.++++.++
T Consensus 281 ~~~~s~dg~~l~~~~~~-~~---~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~ 333 (343)
T 1ri6_A 281 GFNVDHSGKYLIAAGQK-SH---HISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH 333 (343)
T ss_dssp CEEECTTSSEEEEECTT-TC---EEEEEEEETTTTEEEEEEEEECSSSCCEEEEEEE
T ss_pred eEEECCCCCEEEEecCC-CC---eEEEEEEcCCCceeeEccccccCCCCeeEEEEcc
Confidence 3333 34 46666543 21 2234555888999999887776655566666544
|
| >3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A | Back alignment and structure |
|---|
Probab=97.92 E-value=9.8e-07 Score=77.68 Aligned_cols=90 Identities=22% Similarity=0.399 Sum_probs=78.1
Q ss_pred hhHHHHHHHHHhcCceeceE-------EEECCeEEehhhHHHhhcCcccc------------ccceeecCCCCHHHHHHH
Q psy2979 2 KMVLTGFNEARKNNEFCDVT-------LCVDGSKFPAHRVVLAASSPYFK------------VLETIRLPQLSPYFLHDC 62 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~-------l~~~~~~~~~hr~vLaa~s~yf~------------~m~~vrl~~l~~~~l~~~ 62 (400)
++|..+|.++.+++.|.++. |..|+..++.+..|+.|+..|.+ +|++|||+.|++++|.+.
T Consensus 165 ~~i~~~f~~v~~~~~f~~L~~~~l~~lL~~d~L~v~sE~~vf~av~~W~~~~~~~r~~~~~~ll~~VRf~l~~~~~L~~~ 244 (279)
T 3i3n_A 165 DMIRRNFHKVIQDEEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQRNAEERERYFEELFKLLRLSQMKPTYLTRH 244 (279)
T ss_dssp HHHHHTHHHHTTSSGGGGSCHHHHHHHHTCSSCCCSCHHHHHHHHHHHHHTTHHHHTTTHHHHHTTSCGGGSCHHHHHHT
T ss_pred HHHHHHHHHHhcCcChhcCCHHHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 46788999999999999884 56677788888888888777653 679999999999999999
Q ss_pred hhhcccccCchhHHHHHHHHHhcCCCccc
Q psy2979 63 VEQCAIIKNNPQCAQLVEEAKLFHLLPDR 91 (400)
Q Consensus 63 i~~~~l~~~~~~c~~~l~~a~~~~~~~~~ 91 (400)
+.+++++..++.|++++.+|.++|..+..
T Consensus 245 v~~~~l~~~~~~c~~~l~ea~~~~~~~~e 273 (279)
T 3i3n_A 245 VKPERLVANNEVCVKLVADAVERHALRAE 273 (279)
T ss_dssp TTTSHHHHTCHHHHHHHHHHHHHHHHTTC
T ss_pred hhccchhcCCHHHHHHHHHHHHhccCchh
Confidence 99999999999999999999999987653
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=97.90 E-value=0.002 Score=55.49 Aligned_cols=191 Identities=16% Similarity=0.131 Sum_probs=103.9
Q ss_pred eeEEEE-CCeEEEE-E-eecCEEEEEECCCCCeEEccCCCCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCc
Q psy2979 150 HGLVVS-GRNTIYC-L-DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNE 225 (400)
Q Consensus 150 ~~~~~~-~~~~iyv-~-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 225 (400)
++++.. ++. +|+ . .....+..+|+.+........... ..-.+++.. ++.+|+... . ..+.+||+.++.
T Consensus 27 ~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~-~-----~~i~~~d~~~~~ 98 (270)
T 1rwi_B 27 SGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVLPFNGL-YQPQGLAVDGAGTVYVTDF-N-----NRVVTLAAGSNN 98 (270)
T ss_dssp EEEEECTTCC-EEEEECSSSCEEEEECC-----EECCCCSC-CSCCCEEECTTCCEEEEET-T-----TEEEEECTTCSC
T ss_pred cceEECCCCC-EEEEccCCCCcEEEecCCCcccceEeeCCc-CCcceeEECCCCCEEEEcC-C-----CEEEEEeCCCce
Confidence 344443 455 888 6 445678889887765544332111 112233333 567888754 2 468999998876
Q ss_pred eEEccCCCCcccccEEEEe-CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCeEEEEcCc
Q psy2979 226 WSYIEPMKLAVTSPAVVAH-EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSCIYVLGGW 303 (400)
Q Consensus 226 W~~~~~l~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~ 303 (400)
......... ..-.+++.. ++.+|+.... ...+.+||..+........... ..-.+++.- ++.+|+....
T Consensus 99 ~~~~~~~~~-~~p~~i~~~~~g~l~v~~~~-------~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~~ 169 (270)
T 1rwi_B 99 QTVLPFDGL-NYPEGLAVDTQGAVYVADRG-------NNRVVKLAAGSKTQTVLPFTGL-NDPDGVAVDNSGNVYVTDTD 169 (270)
T ss_dssp CEECCCCSC-SSEEEEEECTTCCEEEEEGG-------GTEEEEECTTCCSCEECCCCSC-CSCCCEEECTTCCEEEEEGG
T ss_pred EeeeecCCc-CCCcceEECCCCCEEEEECC-------CCEEEEEECCCceeEeeccccC-CCceeEEEeCCCCEEEEECC
Confidence 554432111 111233332 6789988654 2478999877665543321111 111233333 6789988653
Q ss_pred CCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcE
Q psy2979 304 HASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSW 371 (400)
Q Consensus 304 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W 371 (400)
...+.+||+.+..-...... ....+...++ +|.||+.... .+.|.+||+.+..-
T Consensus 170 ------~~~i~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~g~l~v~~~~------~~~v~~~~~~~~~~ 225 (270)
T 1rwi_B 170 ------NNRVVKLEAESNNQVVLPFT--DITAPWGIAVDEAGTVYVTEHN------TNQVVKLLAGSTTS 225 (270)
T ss_dssp ------GTEEEEECTTTCCEEECCCS--SCCSEEEEEECTTCCEEEEETT------TSCEEEECTTCSCC
T ss_pred ------CCEEEEEecCCCceEeeccc--CCCCceEEEECCCCCEEEEECC------CCcEEEEcCCCCcc
Confidence 45899999987764443211 1122333444 5689987643 24689999977643
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0095 Score=53.25 Aligned_cols=201 Identities=9% Similarity=0.049 Sum_probs=104.5
Q ss_pred cCEEEEEECCCCCeEEccCCCCcceeeeEEEE-C-CEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcc-------
Q psy2979 166 VDIVYVAASMHKILHSLGSLKFDFDVSGIAML-D-GFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAV------- 236 (400)
Q Consensus 166 ~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~------- 236 (400)
...++.+|+.+++....-+.. ..-.+++.. + +.+|+.++.+ ..+..||+.+++-...-+.+...
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~v~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~ 140 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHND--LKPFGATINNTTQTLWFGNTVN-----SAVTAIDAKTGEVKGRLVLDDRKRTEEVRP 140 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEES--SCCCSEEEETTTTEEEEEETTT-----TEEEEEETTTCCEEEEEESCCCCCCSSCCC
T ss_pred CccEEEEcCCCCeEEEEEecC--CCcceEEECCCCCEEEEEecCC-----CEEEEEeCCCCeeEEEEecCCCccccccCC
Confidence 457899999887644322221 112233333 3 4688876543 47899999988643322222111
Q ss_pred -cccEEEE--eCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEE-ECC-eEEEEcCcCCCCCCCC
Q psy2979 237 -TSPAVVA--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICA-LDS-CIYVLGGWHASTENTN 311 (400)
Q Consensus 237 -~~~~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~ 311 (400)
.-..++. -++.+|+.+.. + ...++.||+.+.+-...-+.... ....++. -++ .+|+... ..
T Consensus 141 ~~~~~~~~s~dg~~l~~~~~~---~---~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~-------~~ 206 (353)
T 3vgz_A 141 LQPRELVADDATNTVYISGIG---K---ESVIWVVDGGNIKLKTAIQNTGK-MSTGLALDSEGKRLYTTNA-------DG 206 (353)
T ss_dssp CEEEEEEEETTTTEEEEEEES---S---SCEEEEEETTTTEEEEEECCCCT-TCCCCEEETTTTEEEEECT-------TS
T ss_pred CCCceEEECCCCCEEEEEecC---C---CceEEEEcCCCCceEEEecCCCC-ccceEEECCCCCEEEEEcC-------CC
Confidence 0122333 24568887622 1 23799999987764332221111 1122222 244 5666543 35
Q ss_pred eEEEEECCCCeEEEccCCc-C-ccCcce-EEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceee
Q psy2979 312 RVECYHIAENTWEYKSPMK-E-KRYRPG-IAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGC 386 (400)
Q Consensus 312 ~v~~yd~~~~~W~~~~~~~-~-~~~~~~-~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~ 386 (400)
.+..||+.+++-...-..+ . +..... ++.. ++.+|+.... .+.+++||+.+++....-..+.+ .++
T Consensus 207 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------~~~v~~~d~~~~~~~~~~~~~~~---~~~ 277 (353)
T 3vgz_A 207 ELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK------AAEVLVVDTRNGNILAKVAAPES---LAV 277 (353)
T ss_dssp EEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS------SSEEEEEETTTCCEEEEEECSSC---CCE
T ss_pred eEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC------CCEEEEEECCCCcEEEEEEcCCC---ceE
Confidence 7889999888644322221 1 122222 2322 4567776543 35799999988876544334433 345
Q ss_pred EEEccccccc
Q psy2979 387 VPLQIHKSQF 396 (400)
Q Consensus 387 ~~~~~~~~~~ 396 (400)
+...+..+++
T Consensus 278 ~~s~dg~~l~ 287 (353)
T 3vgz_A 278 LFNPARNEAY 287 (353)
T ss_dssp EEETTTTEEE
T ss_pred EECCCCCEEE
Confidence 5555544443
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0033 Score=63.55 Aligned_cols=208 Identities=12% Similarity=0.124 Sum_probs=119.4
Q ss_pred eEEEEEcCCCceEEccCCc-ccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCC----cceeeeEEEE-C
Q psy2979 126 SVEGFCVKTKVWKTLSCLP-FAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKF----DFDVSGIAML-D 198 (400)
Q Consensus 126 ~~~~yd~~~~~w~~~~~~~-~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~----~r~~~~~~~~-~ 198 (400)
-+..||+.++++..+.... ....-.+++.- ++. |++... ..+++||+.+++|......+. ...-.++..- +
T Consensus 428 Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~ 505 (781)
T 3v9f_A 428 NISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSE 505 (781)
T ss_dssp EEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTT
T ss_pred CEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCC
Confidence 3556677777766654211 11112233333 445 777654 789999999998876653321 1111122222 5
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCCceEEccC---CCCcccccEEEE-eCCEEEEEcCccccCCCCcceE-EEEeCCCC
Q psy2979 199 GFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEP---MKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQV-QRYNPKVN 273 (400)
Q Consensus 199 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~---l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v-~~yd~~~~ 273 (400)
+.|++... . ..+.+||+.+++++.... ++.... .+++. -++.|++.... .+ .+||+.++
T Consensus 506 g~lWigt~-~-----~Gl~~~~~~~~~~~~~~~~~~l~~~~i-~~i~~d~~g~lWi~T~~---------Glv~~~d~~~~ 569 (781)
T 3v9f_A 506 GRFWIGTF-G-----GGVGIYTPDMQLVRKFNQYEGFCSNTI-NQIYRSSKGQMWLATGE---------GLVCFPSARNF 569 (781)
T ss_dssp CCEEEEES-S-----SCEEEECTTCCEEEEECTTTTCSCSCE-EEEEECTTSCEEEEETT---------EEEEESCTTTC
T ss_pred CCEEEEEc-C-----CCEEEEeCCCCeEEEccCCCCCCCCee-EEEEECCCCCEEEEECC---------CceEEECCCCC
Confidence 67777431 1 238899999999887653 222111 12222 36778875332 46 99999998
Q ss_pred ceeecc---CCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccC---CcCccCcceEEEE--CCE
Q psy2979 274 QWQDLA---PMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSP---MKEKRYRPGIAVI--DGK 344 (400)
Q Consensus 274 ~W~~~~---~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~---~~~~~~~~~~~~~--~~~ 344 (400)
++.... .++.... .+++.- +|.|++.+ .+-+.+|||.++++..... ++.......++.. +|+
T Consensus 570 ~~~~~~~~~gl~~~~i-~~i~~d~~g~lW~~t--------~~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~ 640 (781)
T 3v9f_A 570 DYQVFQRKEGLPNTHI-RAISEDKNGNIWAST--------NTGISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGL 640 (781)
T ss_dssp CCEEECGGGTCSCCCC-CEEEECSSSCEEEEC--------SSCEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSC
T ss_pred cEEEccccCCCCCceE-EEEEECCCCCEEEEc--------CCceEEEECCCCceEEecccCCccccccccCceEECCCCE
Confidence 877654 3443322 233333 67888876 3468999999999887642 4433333333333 677
Q ss_pred EEEEcCccCCCCCCCeEEEEECCC
Q psy2979 345 IYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 345 lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
||+-| . +.+..|||+.
T Consensus 641 l~~g~-~-------~Gl~~f~p~~ 656 (781)
T 3v9f_A 641 IYFGS-I-------NGLCFFNPDI 656 (781)
T ss_dssp EEEEE-T-------TEEEEECSCC
T ss_pred EEEEC-C-------CceEEEChhh
Confidence 77644 3 3567888864
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=0.014 Score=50.59 Aligned_cols=217 Identities=10% Similarity=0.078 Sum_probs=113.6
Q ss_pred ceEEEEEcCCCceEEccCCc----ccceeeeEEEE--CCeEEEEEee--cCEEEEEECCCCCeEEccCCCCcceeeeEEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLP----FAISKHGLVVS--GRNTIYCLDI--VDIVYVAASMHKILHSLGSLKFDFDVSGIAM 196 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~----~~~~~~~~~~~--~~~~iyv~~~--~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~ 196 (400)
..+..||+.......+.... .....+++++. ++. +|+... ...+..||+.......+..... ..-.+++.
T Consensus 51 ~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~-l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~-~~~~~i~~ 128 (286)
T 1q7f_A 51 HRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGD-IIVTERSPTHQIQIYNQYGQFVRKFGATIL-QHPRGVTV 128 (286)
T ss_dssp TEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTE-EEEEECGGGCEEEEECTTSCEEEEECTTTC-SCEEEEEE
T ss_pred CEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCe-EEEEcCCCCCEEEEECCCCcEEEEecCccC-CCceEEEE
Confidence 46788887744333332211 11223455553 556 888853 6789999965443333322111 11122333
Q ss_pred E-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCc
Q psy2979 197 L-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ 274 (400)
Q Consensus 197 ~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 274 (400)
. ++.+|+..... ..+.+||+..+....+........-.+++. -++.+|+.+.. ...+.+||+....
T Consensus 129 ~~~g~l~v~~~~~-----~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~-------~~~i~~~~~~g~~ 196 (286)
T 1q7f_A 129 DNKGRIIVVECKV-----MRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR-------AHCVKVFNYEGQY 196 (286)
T ss_dssp CTTSCEEEEETTT-----TEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG-------GTEEEEEETTCCE
T ss_pred eCCCCEEEEECCC-----CEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECC-------CCEEEEEcCCCCE
Confidence 2 67888875422 468999987654444421111111122333 36889998654 3479999987665
Q ss_pred eeeccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCC-eEEEEECCCCeEEEccCCcCccCcceEEEE-CCEEEEEcCc
Q psy2979 275 WQDLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTN-RVECYHIAENTWEYKSPMKEKRYRPGIAVI-DGKIYVLGGE 351 (400)
Q Consensus 275 W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~-~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~lyv~GG~ 351 (400)
...+..-.....-.+++.- ++.+|+.+.. .+ .+.+||+....-..+..........+++.- +|++|+.. .
T Consensus 197 ~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~------~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~-~ 269 (286)
T 1q7f_A 197 LRQIGGEGITNYPIGVGINSNGEILIADNH------NNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLAS-K 269 (286)
T ss_dssp EEEESCTTTSCSEEEEEECTTCCEEEEECS------SSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEEE-T
T ss_pred EEEEccCCccCCCcEEEECCCCCEEEEeCC------CCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEEC-C
Confidence 4444321100111233332 6789988754 33 899999876544443321111111223332 78999984 2
Q ss_pred cCCCCCCCeEEEEECCC
Q psy2979 352 EGWDGYHDSIECYDVDN 368 (400)
Q Consensus 352 ~~~~~~~~~v~~yd~~~ 368 (400)
+ +.|.+|+...
T Consensus 270 -~-----~~v~v~~~~~ 280 (286)
T 1q7f_A 270 -D-----YRLYIYRYVQ 280 (286)
T ss_dssp -T-----TEEEEEECSC
T ss_pred -C-----CeEEEEEccc
Confidence 1 4677777543
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0096 Score=55.52 Aligned_cols=212 Identities=11% Similarity=0.073 Sum_probs=113.6
Q ss_pred ceEEEEEcCCCceEEccCCc-ccceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLP-FAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYA 203 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~-~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv 203 (400)
..+..||..+++-... +. ....-.+++..++. ++.......+..+|..+++-.. .+............++..++
T Consensus 139 g~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~-l~s~~~dg~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~~~~l~ 213 (445)
T 2ovr_B 139 NTLKVWSAVTGKCLRT--LVGHTGGVWSSQMRDNI-IISGSTDRTLKVWNAETGECIH--TLYGHTSTVRCMHLHEKRVV 213 (445)
T ss_dssp SCEEEEETTTCCEEEE--CCCCSSCEEEEEEETTE-EEEEETTSCEEEEETTTTEEEE--EECCCSSCEEEEEEETTEEE
T ss_pred CcEEEEECCCCcEEEE--EcCCCCCEEEEEecCCE-EEEEeCCCeEEEEECCcCcEEE--EECCCCCcEEEEEecCCEEE
Confidence 4688888877663321 11 11112233444444 5555666788899988765322 11111111122223445566
Q ss_pred EcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCC
Q psy2979 204 VGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLI 283 (400)
Q Consensus 204 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 283 (400)
.|+.+ ..+..||..+++-... +........+...++..++.|+. ++ .+..||..+.+-.. .+..
T Consensus 214 s~s~d-----g~i~~wd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~~~~---dg----~i~iwd~~~~~~~~--~~~~ 277 (445)
T 2ovr_B 214 SGSRD-----ATLRVWDIETGQCLHV--LMGHVAAVRCVQYDGRRVVSGAY---DF----MVKVWDPETETCLH--TLQG 277 (445)
T ss_dssp EEETT-----SEEEEEESSSCCEEEE--EECCSSCEEEEEECSSCEEEEET---TS----CEEEEEGGGTEEEE--EECC
T ss_pred EEeCC-----CEEEEEECCCCcEEEE--EcCCcccEEEEEECCCEEEEEcC---CC----EEEEEECCCCcEeE--EecC
Confidence 66655 4688899887753322 11111122333447777888877 44 68889887654222 2221
Q ss_pred CceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEE
Q psy2979 284 PRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIEC 363 (400)
Q Consensus 284 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~ 363 (400)
..........++..++.|+. ...+..||..+++-... +............++..++.|+. + ..|.+
T Consensus 278 ~~~~v~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~~~~-d-----g~i~v 343 (445)
T 2ovr_B 278 HTNRVYSLQFDGIHVVSGSL------DTSIRVWDVETGNCIHT--LTGHQSLTSGMELKDNILVSGNA-D-----STVKI 343 (445)
T ss_dssp CSSCEEEEEECSSEEEEEET------TSCEEEEETTTCCEEEE--ECCCCSCEEEEEEETTEEEEEET-T-----SCEEE
T ss_pred CCCceEEEEECCCEEEEEeC------CCeEEEEECCCCCEEEE--EcCCcccEEEEEEeCCEEEEEeC-C-----CeEEE
Confidence 11222333447777777776 45789999987764322 11111222334445666677765 2 46889
Q ss_pred EECCCCcE
Q psy2979 364 YDVDNDSW 371 (400)
Q Consensus 364 yd~~~~~W 371 (400)
||..+++-
T Consensus 344 wd~~~~~~ 351 (445)
T 2ovr_B 344 WDIKTGQC 351 (445)
T ss_dssp EETTTCCE
T ss_pred EECCCCcE
Confidence 99877653
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0076 Score=54.29 Aligned_cols=237 Identities=10% Similarity=0.014 Sum_probs=117.6
Q ss_pred EEEEEeccCCCcccceEEEEEcCCCceEEccCCccc-ceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCC-
Q psy2979 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFA-ISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKF- 187 (400)
Q Consensus 111 ~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~-~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~- 187 (400)
.++++|+.+ ..+..||..++++..+..+... ..-.+++.. ++..++.......+..||..++++.....+..
T Consensus 21 ~~l~~~~~d-----~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 95 (372)
T 1k8k_C 21 TQIAICPNN-----HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRI 95 (372)
T ss_dssp SEEEEECSS-----SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCC
T ss_pred CEEEEEeCC-----CEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecC
Confidence 345566544 4788899888876554433321 122334444 34413333545678888888777654433221
Q ss_pred cceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCc-eEEccCCCCcccc--cEEEE-eCCEEEEEcCccccCCCCc
Q psy2979 188 DFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNE-WSYIEPMKLAVTS--PAVVA-HEGMLYVTGGAILEDGDGI 262 (400)
Q Consensus 188 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~l~~~~~~--~~~~~-~~~~iyv~GG~~~~~~~~~ 262 (400)
...-.++... ++..++.|+.+ ..+..||..+.+ |.....+..+... .+++. -++..++.|+. ++
T Consensus 96 ~~~v~~~~~~~~~~~l~~~~~d-----~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg--- 164 (372)
T 1k8k_C 96 NRAARCVRWAPNEKKFAVGSGS-----RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC---DF--- 164 (372)
T ss_dssp SSCEEEEEECTTSSEEEEEETT-----SSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET---TS---
T ss_pred CCceeEEEECCCCCEEEEEeCC-----CEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC---CC---
Confidence 1112222222 55666667654 346666666553 3322222111111 12222 26677777776 44
Q ss_pred ceEEEEeCCCC----------------ceeeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEE
Q psy2979 263 EQVQRYNPKVN----------------QWQDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWE 324 (400)
Q Consensus 263 ~~v~~yd~~~~----------------~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 324 (400)
.+..||.... .-..+..+.........+.. ++..++.|+. ...+..||..+.+-.
T Consensus 165 -~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~ 237 (372)
T 1k8k_C 165 -KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH------DSTVCLADADKKMAV 237 (372)
T ss_dssp -CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET------TTEEEEEEGGGTTEE
T ss_pred -CEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeC------CCEEEEEECCCCcee
Confidence 6888885421 11111122111111122222 5666777765 457999998776533
Q ss_pred EccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCC--CcEEEecCC
Q psy2979 325 YKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDN--DSWEIMSHL 377 (400)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~--~~W~~~~~~ 377 (400)
..-.............-++++++.| . + ..+.+||..+ ++|..+..+
T Consensus 238 ~~~~~~~~~v~~~~~~~~~~~l~~~-~-d-----~~i~i~~~~~~~~~~~~~~~~ 285 (372)
T 1k8k_C 238 ATLASETLPLLAVTFITESSLVAAG-H-D-----CFPVLFTYDSAAGKLSFGGRL 285 (372)
T ss_dssp EEEECSSCCEEEEEEEETTEEEEEE-T-T-----SSCEEEEEETTTTEEEECCCC
T ss_pred EEEccCCCCeEEEEEecCCCEEEEE-e-C-----CeEEEEEccCcCceEEEeecc
Confidence 2211111111111222377876666 4 2 3567777777 889877544
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.71 E-value=0.016 Score=51.11 Aligned_cols=217 Identities=12% Similarity=0.050 Sum_probs=115.4
Q ss_pred CcccceeeeEEEE-CCeEEEEEe-ecCEEEEEECCCCCeEEccCCCCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEE
Q psy2979 143 LPFAISKHGLVVS-GRNTIYCLD-IVDIVYVAASMHKILHSLGSLKFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERY 219 (400)
Q Consensus 143 ~~~~~~~~~~~~~-~~~~iyv~~-~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~y 219 (400)
+|......++++. ++. ||+.. ....++.+|+... .......+ ..-++++.. ++++|+...... ...+.+|
T Consensus 28 ~p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~-~~~~~~~~--~~p~gia~~~dG~l~vad~~~~---~~~v~~~ 100 (306)
T 2p4o_A 28 FPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGN-QQIHATVE--GKVSGLAFTSNGDLVATGWNAD---SIPVVSL 100 (306)
T ss_dssp ECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCC-EEEEEECS--SEEEEEEECTTSCEEEEEECTT---SCEEEEE
T ss_pred CCCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCCc-eEEEEeCC--CCceeEEEcCCCcEEEEeccCC---cceEEEE
Confidence 3333334455553 556 88884 5578999998764 33222222 122333333 567888753211 1248889
Q ss_pred eCCCCceEEccCCCCcccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCc---eeeccC----CC--CCceeee
Q psy2979 220 DPTKNEWSYIEPMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ---WQDLAP----ML--IPRSGAA 289 (400)
Q Consensus 220 d~~~~~W~~~~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~---W~~~~~----~~--~~r~~~~ 289 (400)
|+.+++.+.+..++..+.....+. .++.+|+.... ...++++|+.+.. |..-+. .+ .-....+
T Consensus 101 d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~-------~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~png 173 (306)
T 2p4o_A 101 VKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSY-------RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANG 173 (306)
T ss_dssp ECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETT-------TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEE
T ss_pred cCCCCeEEEEEeCCCccccCcccccCCCcEEEEECC-------CCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCC
Confidence 998888877665554444334443 35667876532 2479999987642 211110 11 1111222
Q ss_pred EEEECCeEEEEcCcCCCCCCCCeEEEEECCC-CeE---EEccCCcCccCcceEEEE-CCEEEEEcCccCCCCCCCeEEEE
Q psy2979 290 ICALDSCIYVLGGWHASTENTNRVECYHIAE-NTW---EYKSPMKEKRYRPGIAVI-DGKIYVLGGEEGWDGYHDSIECY 364 (400)
Q Consensus 290 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~-~~W---~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~y 364 (400)
+..-++.+|+..-. .+.+++||+.. ++. ...... ..-.++++- +|+||+.-.. .+.|.+|
T Consensus 174 is~dg~~lyv~d~~------~~~I~~~~~~~~g~~~~~~~~~~~---~~P~gi~vd~dG~l~va~~~------~~~V~~~ 238 (306)
T 2p4o_A 174 LKRFGNFLYVSNTE------KMLLLRIPVDSTDKPGEPEIFVEQ---TNIDDFAFDVEGNLYGATHI------YNSVVRI 238 (306)
T ss_dssp EEEETTEEEEEETT------TTEEEEEEBCTTSCBCCCEEEEES---CCCSSEEEBTTCCEEEECBT------TCCEEEE
T ss_pred cCcCCCEEEEEeCC------CCEEEEEEeCCCCCCCccEEEecc---CCCCCeEECCCCCEEEEeCC------CCeEEEE
Confidence 33335578887643 56899999865 221 111111 111233333 6889987643 2569999
Q ss_pred ECCCCcEEEecCCCCCCCceeeEEE
Q psy2979 365 DVDNDSWEIMSHLPSARSWLGCVPL 389 (400)
Q Consensus 365 d~~~~~W~~~~~~~~~r~~~~~~~~ 389 (400)
|+. ++...+...+.+-....++.+
T Consensus 239 ~~~-G~~~~~~~~~~~~~~p~~~a~ 262 (306)
T 2p4o_A 239 APD-RSTTIIAQAEQGVIGSTAVAF 262 (306)
T ss_dssp CTT-CCEEEEECGGGTCTTEEEEEE
T ss_pred CCC-CCEEEEeecccccCCceEEEE
Confidence 996 455444333334333444444
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.016 Score=53.65 Aligned_cols=258 Identities=11% Similarity=0.012 Sum_probs=128.6
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcc---cc-eeeeEEEE-CCeEEEEE-eecCEEEEEECCCCCeEEcc
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPF---AI-SKHGLVVS-GRNTIYCL-DIVDIVYVAASMHKILHSLG 183 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~---~~-~~~~~~~~-~~~~iyv~-~~~~~~~~yd~~~~~w~~~~ 183 (400)
+.+++.++.+ ..+..+|+.+++.......+. .. .-.+++.. ++. +++. .....+..+|+.+++....-
T Consensus 134 ~~~~~~~~~~-----~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~~~d~~v~~~d~~~~~~~~~~ 207 (433)
T 3bws_A 134 TRLAIPLLED-----EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE-LWVSQMQANAVHVFDLKTLAYKATV 207 (433)
T ss_dssp SEEEEEBTTS-----SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE-EEEEEGGGTEEEEEETTTCCEEEEE
T ss_pred CeEEEEeCCC-----CeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE-EEEEECCCCEEEEEECCCceEEEEE
Confidence 5666666543 458899999887665332211 11 12233333 445 6665 44578999998876543221
Q ss_pred CCCCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE-eCCEEEEEcCccccCCC
Q psy2979 184 SLKFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA-HEGMLYVTGGAILEDGD 260 (400)
Q Consensus 184 ~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~ 260 (400)
.. ....-.+++.. ++.+|+.++.+ ..+..||+.+++....-+... .-.+++. -+++.+++++.. .+.
T Consensus 208 ~~-~~~~~~~~~~~~~~~~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~--~~~ 277 (433)
T 3bws_A 208 DL-TGKWSKILLYDPIRDLVYCSNWIS-----EDISVIDRKTKLEIRKTDKIG--LPRGLLLSKDGKELYIAQFS--ASN 277 (433)
T ss_dssp EC-SSSSEEEEEEETTTTEEEEEETTT-----TEEEEEETTTTEEEEECCCCS--EEEEEEECTTSSEEEEEEEE--SCT
T ss_pred cC-CCCCeeEEEEcCCCCEEEEEecCC-----CcEEEEECCCCcEEEEecCCC--CceEEEEcCCCCEEEEEECC--CCc
Confidence 11 11111222222 44677776543 368999998886644322221 1122222 245344444431 110
Q ss_pred ---CcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CC-eEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCc
Q psy2979 261 ---GIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DS-CIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYR 335 (400)
Q Consensus 261 ---~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~ 335 (400)
.-..+..||+.+.+-......+. ....++.. ++ .+|+.++. ...+..||+.+++-...- +... .
T Consensus 278 ~~~~dg~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~------~~~v~v~d~~~~~~~~~~--~~~~-~ 346 (433)
T 3bws_A 278 QESGGGRLGIYSMDKEKLIDTIGPPG--NKRHIVSGNTENKIYVSDMC------CSKIEVYDLKEKKVQKSI--PVFD-K 346 (433)
T ss_dssp TCSCCEEEEEEETTTTEEEEEEEEEE--CEEEEEECSSTTEEEEEETT------TTEEEEEETTTTEEEEEE--ECSS-S
T ss_pred cccCCCeEEEEECCCCcEEeeccCCC--CcceEEECCCCCEEEEEecC------CCEEEEEECCCCcEEEEe--cCCC-C
Confidence 02478999998775433321111 11122222 34 68887665 568999999877644322 2111 1
Q ss_pred ceEEEE--CC-EEEEEcCccCCC---------CCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEcccccccc
Q psy2979 336 PGIAVI--DG-KIYVLGGEEGWD---------GYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQIHKSQFV 397 (400)
Q Consensus 336 ~~~~~~--~~-~lyv~GG~~~~~---------~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~ 397 (400)
...+.+ ++ .+|+.+.. ... .....|++||+.+.+.... ++....-.+++...+..++++
T Consensus 347 ~~~~~~s~dg~~l~~~~~~-~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~~ 417 (433)
T 3bws_A 347 PNTIALSPDGKYLYVSCRG-PNHPTEGYLKKGLVLGKVYVIDTTTDTVKEF--WEAGNQPTGLDVSPDNRYLVI 417 (433)
T ss_dssp EEEEEECTTSSEEEEEECC-CCCTTTCTTSCCSSCCEEEEEETTTTEEEEE--EECSSSEEEEEECTTSCEEEE
T ss_pred CCeEEEcCCCCEEEEEecC-CCccccccccccccceEEEEEECCCCcEEEE--ecCCCCCceEEEcCCCCEEEE
Confidence 223333 45 45555432 110 0124899999988765443 222222344444455555543
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.015 Score=51.33 Aligned_cols=241 Identities=13% Similarity=0.026 Sum_probs=121.5
Q ss_pred ceEEEEEcCCCceE----EccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCCccee-eeEEEE-
Q psy2979 125 RSVEGFCVKTKVWK----TLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDV-SGIAML- 197 (400)
Q Consensus 125 ~~~~~yd~~~~~w~----~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~-~~~~~~- 197 (400)
..+..||..++... .+........-.+++.. ++..+++......+..||..+++......+...... .+++..
T Consensus 72 g~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~ 151 (337)
T 1gxr_A 72 GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP 151 (337)
T ss_dssp SEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT
T ss_pred CeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECC
Confidence 46788887765421 11111112222333333 333133335557889999988775443332221111 122222
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCcee
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQ 276 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~ 276 (400)
++..++.|+.+ ..+..||..+++....-....... .+++. -++..+++|+. + ..+..||..+.+-.
T Consensus 152 ~~~~l~~~~~d-----g~v~~~d~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~---d----g~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 152 DSKVCFSCCSD-----GNIAVWDLHNQTLVRQFQGHTDGA-SCIDISNDGTKLWTGGL---D----NTVRSWDLREGRQL 218 (337)
T ss_dssp TSSEEEEEETT-----SCEEEEETTTTEEEEEECCCSSCE-EEEEECTTSSEEEEEET---T----SEEEEEETTTTEEE
T ss_pred CCCEEEEEeCC-----CcEEEEeCCCCceeeeeecccCce-EEEEECCCCCEEEEEec---C----CcEEEEECCCCceE
Confidence 55666667654 358899998876433222111111 12222 26667777776 4 37899998776543
Q ss_pred eccCCCCCceeeeEEE-ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccC
Q psy2979 277 DLAPMLIPRSGAAICA-LDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEG 353 (400)
Q Consensus 277 ~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~ 353 (400)
..-..+.+ ...++. -++..+++|+. ...+..||..+..-..+.... .....+.+ ++++++.|+. +
T Consensus 219 ~~~~~~~~--v~~~~~s~~~~~l~~~~~------~~~i~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~-d 286 (337)
T 1gxr_A 219 QQHDFTSQ--IFSLGYCPTGEWLAVGME------SSNVEVLHVNKPDKYQLHLHE---SCVLSLKFAYCGKWFVSTGK-D 286 (337)
T ss_dssp EEEECSSC--EEEEEECTTSSEEEEEET------TSCEEEEETTSSCEEEECCCS---SCEEEEEECTTSSEEEEEET-T
T ss_pred eeecCCCc--eEEEEECCCCCEEEEEcC------CCcEEEEECCCCCeEEEcCCc---cceeEEEECCCCCEEEEecC-C
Confidence 32222222 122222 26677777765 457899999877644332221 11222233 5677777765 2
Q ss_pred CCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEcccccccc
Q psy2979 354 WDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQIHKSQFV 397 (400)
Q Consensus 354 ~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~ 397 (400)
..+.+||..+++-.... .....-.+++...+..++++
T Consensus 287 -----g~i~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~ 323 (337)
T 1gxr_A 287 -----NLLNAWRTPYGASIFQS--KESSSVLSCDISVDDKYIVT 323 (337)
T ss_dssp -----SEEEEEETTTCCEEEEE--ECSSCEEEEEECTTSCEEEE
T ss_pred -----CcEEEEECCCCeEEEEe--cCCCcEEEEEECCCCCEEEE
Confidence 47889998887644322 22222333444444444444
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.025 Score=52.64 Aligned_cols=216 Identities=11% Similarity=0.082 Sum_probs=115.6
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAV 204 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~ 204 (400)
..+..+|..+++-...-.. ....-.++...++. ++.......+..+|..+++-... +............++..++.
T Consensus 179 g~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~-l~s~s~dg~i~~wd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~ 254 (445)
T 2ovr_B 179 RTLKVWNAETGECIHTLYG-HTSTVRCMHLHEKR-VVSGSRDATLRVWDIETGQCLHV--LMGHVAAVRCVQYDGRRVVS 254 (445)
T ss_dssp SCEEEEETTTTEEEEEECC-CSSCEEEEEEETTE-EEEEETTSEEEEEESSSCCEEEE--EECCSSCEEEEEECSSCEEE
T ss_pred CeEEEEECCcCcEEEEECC-CCCcEEEEEecCCE-EEEEeCCCEEEEEECCCCcEEEE--EcCCcccEEEEEECCCEEEE
Confidence 3566777766543221110 11111233333444 55556667888999887653221 11111112223347777777
Q ss_pred cccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCC
Q psy2979 205 GGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIP 284 (400)
Q Consensus 205 GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~ 284 (400)
|+.+ ..+..||+.+.+-.. .+............++..++.|+. ++ .+..||..+.+-... +...
T Consensus 255 ~~~d-----g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~~~~~---d~----~i~i~d~~~~~~~~~--~~~~ 318 (445)
T 2ovr_B 255 GAYD-----FMVKVWDPETETCLH--TLQGHTNRVYSLQFDGIHVVSGSL---DT----SIRVWDVETGNCIHT--LTGH 318 (445)
T ss_dssp EETT-----SCEEEEEGGGTEEEE--EECCCSSCEEEEEECSSEEEEEET---TS----CEEEEETTTCCEEEE--ECCC
T ss_pred EcCC-----CEEEEEECCCCcEeE--EecCCCCceEEEEECCCEEEEEeC---CC----eEEEEECCCCCEEEE--EcCC
Confidence 7765 358888887764322 222111222333447777778877 44 689999877653221 1111
Q ss_pred ceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCc-CccCcceEEEECCEEEEEcCccCCCCCCCeEEE
Q psy2979 285 RSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMK-EKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIEC 363 (400)
Q Consensus 285 r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~ 363 (400)
.........++..++.|+. ...+..||..+++-...-..+ .......+...++..++.|+. + ..|.+
T Consensus 319 ~~~v~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~-d-----g~v~i 386 (445)
T 2ovr_B 319 QSLTSGMELKDNILVSGNA------DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSD-D-----GTVKL 386 (445)
T ss_dssp CSCEEEEEEETTEEEEEET------TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEET-T-----SEEEE
T ss_pred cccEEEEEEeCCEEEEEeC------CCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeC-C-----CeEEE
Confidence 1222333445666777765 457999998776543222211 122223345557777777876 2 47899
Q ss_pred EECCCCcEE
Q psy2979 364 YDVDNDSWE 372 (400)
Q Consensus 364 yd~~~~~W~ 372 (400)
||..+++..
T Consensus 387 wd~~~~~~~ 395 (445)
T 2ovr_B 387 WDLKTGEFI 395 (445)
T ss_dssp EETTTCCEE
T ss_pred EECCCCcee
Confidence 999887644
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.014 Score=52.52 Aligned_cols=264 Identities=14% Similarity=0.064 Sum_probs=123.8
Q ss_pred cEEEEEeccCCCc-ccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEee----cCEE--EEEECCCCCeEE
Q psy2979 110 NVIIAVGGEDDKV-VLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDI----VDIV--YVAASMHKILHS 181 (400)
Q Consensus 110 ~~i~~~gg~~~~~-~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~----~~~~--~~yd~~~~~w~~ 181 (400)
...+.+|.+.... .--.++.+|+.++++..+... .......++.. ++..||+... ...+ |.+++.+++.+.
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~ 91 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL 91 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE
Confidence 3455677665321 222455567788887766543 22222233433 3443666633 2455 455665567766
Q ss_pred ccCCCC-cceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCc-eEEcc-------CCCC-----cccccEEEE-eCC
Q psy2979 182 LGSLKF-DFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNE-WSYIE-------PMKL-----AVTSPAVVA-HEG 246 (400)
Q Consensus 182 ~~~~~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~-------~l~~-----~~~~~~~~~-~~~ 246 (400)
+...+. ...-..++.-++.+|+.+..+ ..+..|+..++. ...+. .-+. ....+.++. -++
T Consensus 92 ~~~~~~~~~~p~~~~~dg~~l~~~~~~~-----~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg 166 (361)
T 3scy_A 92 LNTQKTMGADPCYLTTNGKNIVTANYSG-----GSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDG 166 (361)
T ss_dssp EEEEECSSSCEEEEEECSSEEEEEETTT-----TEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTS
T ss_pred eeEeccCCCCcEEEEECCCEEEEEECCC-----CEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCC
Confidence 654432 122222333234566654322 457788876432 11110 0010 001122333 245
Q ss_pred -EEEEEcCccccCCCCcceEEEEeCCCCc-------eeec-----cCCCCCceeeeEEE-ECC-eEEEEcCcCCCCCCCC
Q psy2979 247 -MLYVTGGAILEDGDGIEQVQRYNPKVNQ-------WQDL-----APMLIPRSGAAICA-LDS-CIYVLGGWHASTENTN 311 (400)
Q Consensus 247 -~iyv~GG~~~~~~~~~~~v~~yd~~~~~-------W~~~-----~~~~~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~ 311 (400)
.+|+.+.. .+.+..|+..... .... ...+....-..++. -++ .+|+.+.. ..
T Consensus 167 ~~l~~~~~~-------~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~------~~ 233 (361)
T 3scy_A 167 KYLLADDLG-------TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI------GG 233 (361)
T ss_dssp SEEEEEETT-------TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT------TC
T ss_pred CEEEEEeCC-------CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC------CC
Confidence 47776543 2367777655433 2111 11111111112222 255 47776633 45
Q ss_pred eEEEEECCCCeEEEccC---CcCccCcceEEEE--CCE-EEEEcCccCCCCCCCeEEEEEC--CCCcEEEecCCCCCCCc
Q psy2979 312 RVECYHIAENTWEYKSP---MKEKRYRPGIAVI--DGK-IYVLGGEEGWDGYHDSIECYDV--DNDSWEIMSHLPSARSW 383 (400)
Q Consensus 312 ~v~~yd~~~~~W~~~~~---~~~~~~~~~~~~~--~~~-lyv~GG~~~~~~~~~~v~~yd~--~~~~W~~~~~~~~~r~~ 383 (400)
.+..||..++++..+.. .+..........+ +|+ ||+.... . .+.+.+|+. .+++++.+..++....-
T Consensus 234 ~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~-~----~~~i~v~~~~~~~g~~~~~~~~~~g~~~ 308 (361)
T 3scy_A 234 TVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL-K----ADGVAIFKVDETNGTLTKVGYQLTGIHP 308 (361)
T ss_dssp EEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS-S----SCEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred eEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC-C----CCEEEEEEEcCCCCcEEEeeEecCCCCC
Confidence 78899988887755543 3322223334444 454 6665421 0 134566554 57787777655433223
Q ss_pred eeeEEEcccccccc
Q psy2979 384 LGCVPLQIHKSQFV 397 (400)
Q Consensus 384 ~~~~~~~~~~~~~~ 397 (400)
.++++-.+..++++
T Consensus 309 ~~~~~spdg~~l~~ 322 (361)
T 3scy_A 309 RNFIITPNGKYLLV 322 (361)
T ss_dssp CEEEECTTSCEEEE
T ss_pred ceEEECCCCCEEEE
Confidence 34455445554444
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0044 Score=55.97 Aligned_cols=239 Identities=12% Similarity=0.037 Sum_probs=120.0
Q ss_pred EEEEEeccCCCcccceEEEEEcCCCceEEccCCcccc-eeeeEEEE-C--CeEEEEEeecCEEEEEECCCCCeEEccCCC
Q psy2979 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAI-SKHGLVVS-G--RNTIYCLDIVDIVYVAASMHKILHSLGSLK 186 (400)
Q Consensus 111 ~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~-~~~~~~~~-~--~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~ 186 (400)
..++.|+.+ ..+.+||.....+..+..+.... .-.+++.. + +..++.......+..+|..+++|..+..+.
T Consensus 24 ~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 98 (379)
T 3jrp_A 24 KRLATCSSD-----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHA 98 (379)
T ss_dssp SEEEEEETT-----SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEEC
T ss_pred CEEEEEECC-----CcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeec
Confidence 345555544 35777877655555433332211 12233332 1 341333355567888898888876655543
Q ss_pred CcceeeeEEEE--C--CEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCccc-ccEEEEe--------------CCE
Q psy2979 187 FDFDVSGIAML--D--GFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVT-SPAVVAH--------------EGM 247 (400)
Q Consensus 187 ~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~-~~~~~~~--------------~~~ 247 (400)
..........+ + +.+++.|+.+ ..+..||..+..-.....+..... -.+++.. ++.
T Consensus 99 ~~~~~v~~~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 173 (379)
T 3jrp_A 99 VHSASVNSVQWAPHEYGPLLLVASSD-----GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR 173 (379)
T ss_dssp CCSSCEEEEEECCGGGCSEEEEEETT-----SEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTC
T ss_pred CCCcceEEEEeCCCCCCCEEEEecCC-----CcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCC
Confidence 22222222222 3 5566777655 457888887663211101111111 1112221 467
Q ss_pred EEEEcCccccCCCCcceEEEEeCCCCc--eeeccCCCCCceeeeEEEE--C---CeEEEEcCcCCCCCCCCeEEEEECCC
Q psy2979 248 LYVTGGAILEDGDGIEQVQRYNPKVNQ--WQDLAPMLIPRSGAAICAL--D---SCIYVLGGWHASTENTNRVECYHIAE 320 (400)
Q Consensus 248 iyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r~~~~~~~~--~---~~iyv~GG~~~~~~~~~~v~~yd~~~ 320 (400)
.++.|+. ++ .+..||..+.. |.....+............ + +.+++.|+. ...+..||..+
T Consensus 174 ~l~~~~~---dg----~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~------dg~i~iwd~~~ 240 (379)
T 3jrp_A 174 KFVTGGA---DN----LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ------DRTCIIWTQDN 240 (379)
T ss_dssp EEEEEET---TS----CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET------TSCEEEEEESS
T ss_pred EEEEEeC---CC----eEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC------CCEEEEEeCCC
Confidence 7788877 54 57788775443 5544433322222222222 4 678888876 44677888776
Q ss_pred Ce----EEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECC-CCcEEEecCCCC
Q psy2979 321 NT----WEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVD-NDSWEIMSHLPS 379 (400)
Q Consensus 321 ~~----W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~-~~~W~~~~~~~~ 379 (400)
.. ......... ......+.+ +++.+++|+. + ..|.+||.. .+.|..+..+..
T Consensus 241 ~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~-d-----g~i~iw~~~~~~~~~~~~~~~~ 299 (379)
T 3jrp_A 241 EQGPWKKTLLKEEKF-PDVLWRASWSLSGNVLALSGG-D-----NKVTLWKENLEGKWEPAGEVHQ 299 (379)
T ss_dssp TTSCCEEEESSSSCC-SSCEEEEEECSSSCCEEEEES-S-----SSEEEEEEEETTEEEEEEEEC-
T ss_pred CCccceeeeeccccC-CCcEEEEEEcCCCCEEEEecC-C-----CcEEEEeCCCCCccccccceec
Confidence 52 222221111 111122233 6776777765 2 357777776 467888765443
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.02 Score=55.17 Aligned_cols=257 Identities=11% Similarity=0.032 Sum_probs=133.7
Q ss_pred CcEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEEC--CCCCeEEccCC
Q psy2979 109 INVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAAS--MHKILHSLGSL 185 (400)
Q Consensus 109 ~~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~--~~~~w~~~~~~ 185 (400)
.+.+++.+..+ ..+.++|..+++.... ++.....|+++.. ++..+|+....+.+..||+ .+.+ .+..+
T Consensus 148 ~~~~~vs~~~d-----~~V~v~D~~t~~~~~~--i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~--~~~~i 218 (543)
T 1nir_A 148 PNLFSVTLRDA-----GQIALVDGDSKKIVKV--IDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT--KVAEI 218 (543)
T ss_dssp GGEEEEEEGGG-----TEEEEEETTTCCEEEE--EECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCE--EEEEE
T ss_pred CCEEEEEEcCC-----CeEEEEECCCceEEEE--EecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCc--EEEEE
Confidence 46677765543 5778889988765422 2211124555554 4444777765689999999 5543 22333
Q ss_pred CCcceeeeEEEE-----CC-EEEEEcccCCCCCCCeEEEEeCCCCceEEccCC-----------CCcccccEEEEe-CCE
Q psy2979 186 KFDFDVSGIAML-----DG-FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPM-----------KLAVTSPAVVAH-EGM 247 (400)
Q Consensus 186 ~~~r~~~~~~~~-----~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l-----------~~~~~~~~~~~~-~~~ 247 (400)
+....-.+++.. ++ .+|+.+-.+ .++..+|..+.+-...-+. +.++....+... ++.
T Consensus 219 ~~g~~p~~va~sp~~~~dg~~l~v~~~~~-----~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~ 293 (543)
T 1nir_A 219 KIGIEARSVESSKFKGYEDRYTIAGAYWP-----PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPE 293 (543)
T ss_dssp ECCSEEEEEEECCSTTCTTTEEEEEEEES-----SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSE
T ss_pred ecCCCcceEEeCCCcCCCCCEEEEEEccC-----CeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCE
Confidence 322222233332 34 566643222 4688889887654332111 111222222222 456
Q ss_pred EEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCe-EEEEcCcCCCCCCCCeEEEEECCCCeEEE
Q psy2979 248 LYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSC-IYVLGGWHASTENTNRVECYHIAENTWEY 325 (400)
Q Consensus 248 iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~ 325 (400)
+|+.... ...++.+|..+..-..+..++..+.-+..+.. +++ +|+.+.. .+++..+|..+++-..
T Consensus 294 ~~vs~~~-------~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~------~~~v~v~D~~tg~l~~ 360 (543)
T 1nir_A 294 FIVNVKE-------TGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANN------SNKVAVIDSKDRRLSA 360 (543)
T ss_dssp EEEEETT-------TTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGG------GTEEEEEETTTTEEEE
T ss_pred EEEEECC-------CCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecC------CCeEEEEECCCCeEEE
Confidence 6665544 34789999876432111111222222333333 555 5554433 5689999999987544
Q ss_pred cc---CCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCC-----cEEEecCCCCCC-CceeeEEEccccc
Q psy2979 326 KS---PMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDND-----SWEIMSHLPSAR-SWLGCVPLQIHKS 394 (400)
Q Consensus 326 ~~---~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~-----~W~~~~~~~~~r-~~~~~~~~~~~~~ 394 (400)
.- ..|.+...... .. ++.+|+.+.. + .+.|-++|..+. .|+.+..++..- ....+.+..+...
T Consensus 361 ~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~-~----d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~ 434 (543)
T 1nir_A 361 LVDVGKTPHPGRGANF-VHPKYGPVWSTSHL-G----DGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSH 434 (543)
T ss_dssp EEECSSSBCCTTCEEE-EETTTEEEEEEEBS-S----SSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCE
T ss_pred eeccCCCCCCCCCccc-CCCCCccEEEeccC-C----CceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCc
Confidence 22 22322222222 22 4788888753 1 246888887762 388777665432 2344555566566
Q ss_pred cccc
Q psy2979 395 QFVD 398 (400)
Q Consensus 395 ~~~~ 398 (400)
++++
T Consensus 435 l~v~ 438 (543)
T 1nir_A 435 LYVD 438 (543)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 5554
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00094 Score=57.16 Aligned_cols=109 Identities=14% Similarity=0.107 Sum_probs=82.1
Q ss_pred cEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEEC
Q psy2979 239 PAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHI 318 (400)
Q Consensus 239 ~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~ 318 (400)
.++...++.+|+..|. ++ .+..+|+.+.+-..-- ++...++.+++..+++||+.... .+.+++||+
T Consensus 58 qGL~~~~~~Ly~stG~---~g----~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~------~~~v~V~D~ 123 (268)
T 3nok_A 58 QGLVFHQGHFFESTGH---QG----TLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWT------EGLLFTWSG 123 (268)
T ss_dssp EEEEEETTEEEEEETT---TT----EEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESS------SCEEEEEET
T ss_pred ceEEEECCEEEEEcCC---CC----EEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEcc------CCEEEEEEC
Confidence 4666678999999998 43 5999999988754433 55555667788889999999765 679999999
Q ss_pred CCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 319 AENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 319 ~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
.+.+-.. ..+.+..+.+++.-+++||+.-|. +.++.+||++.+
T Consensus 124 ~Tl~~~~--ti~~~~eGwGLt~Dg~~L~vSdGs-------~~l~~iDp~T~~ 166 (268)
T 3nok_A 124 MPPQRER--TTRYSGEGWGLCYWNGKLVRSDGG-------TMLTFHEPDGFA 166 (268)
T ss_dssp TTTEEEE--EEECSSCCCCEEEETTEEEEECSS-------SEEEEECTTTCC
T ss_pred CcCcEEE--EEeCCCceeEEecCCCEEEEECCC-------CEEEEEcCCCCe
Confidence 8876432 233344566777778899998664 589999999875
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0067 Score=61.41 Aligned_cols=206 Identities=7% Similarity=0.096 Sum_probs=117.3
Q ss_pred eEEEEEcCCCceEEccC----CcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCC----CCc-ceeeeEE
Q psy2979 126 SVEGFCVKTKVWKTLSC----LPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSL----KFD-FDVSGIA 195 (400)
Q Consensus 126 ~~~~yd~~~~~w~~~~~----~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~----~~~-r~~~~~~ 195 (400)
-+..||+.++++..+.. ++.. .-.+++.- ++. |++... ..+++||+.+++|...... ..+ ..-.++.
T Consensus 428 Gl~~~d~~~~~~~~~~~~~~~l~~~-~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 504 (795)
T 4a2l_A 428 GLSILHRNSGQVENFNQRNSQLVNE-NVYAILPDGEGN-LWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLF 504 (795)
T ss_dssp EEEEEETTTCCEEEECTTTSCCSCS-CEEEEEECSSSC-EEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEE
T ss_pred ceeEEeCCCCcEEEeecCCCCcCCC-eeEEEEECCCCC-EEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEE
Confidence 45677777777666543 1111 11223322 455 777654 7899999999999877543 111 1111222
Q ss_pred EE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCC--CCcc-ccc--EEEE-eCCEEEEEcCccccCCCCcceEEEE
Q psy2979 196 ML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPM--KLAV-TSP--AVVA-HEGMLYVTGGAILEDGDGIEQVQRY 268 (400)
Q Consensus 196 ~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l--~~~~-~~~--~~~~-~~~~iyv~GG~~~~~~~~~~~v~~y 268 (400)
.- ++.||+... ..+.+||+.++++ ..... .... ... +.+. -+|.|++.... .+.+|
T Consensus 505 ~d~~g~lWigt~-------~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~---------Gl~~~ 567 (795)
T 4a2l_A 505 RDSHKRLWIGGE-------EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE---------GFYCF 567 (795)
T ss_dssp ECTTCCEEEEES-------SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS---------CEEEE
T ss_pred ECCCCCEEEEeC-------CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC---------CceeE
Confidence 22 567887543 2388999998888 43321 1111 111 2222 35778874322 58999
Q ss_pred eCCCCceeecc---CCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccC---CcCccCcceEEEE
Q psy2979 269 NPKVNQWQDLA---PMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSP---MKEKRYRPGIAVI 341 (400)
Q Consensus 269 d~~~~~W~~~~---~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~---~~~~~~~~~~~~~ 341 (400)
|+.+++++... .+|.... .+++.- +|.|++.+ .+-+.+|||.++++..... ++.......++..
T Consensus 568 d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lWi~t--------~~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~ 638 (795)
T 4a2l_A 568 NEKDKQIKRYNTTNGLPNNVV-YGILEDSFGRLWLST--------NRGISCFNPETEKFRNFTESDGLQSNQFNTASYCR 638 (795)
T ss_dssp ETTTTEEEEECGGGTCSCSCE-EEEEECTTSCEEEEE--------TTEEEEEETTTTEEEEECGGGTCSCSCEEEEEEEE
T ss_pred CCCCCcEEEeCCCCCCchhhe-EEEEECCCCCEEEEc--------CCceEEEcCCCCcEEEcCCcCCCccccCccCceeE
Confidence 99999887664 3443322 233332 67888877 3478999999999887642 4433332233333
Q ss_pred --CCEEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 342 --DGKIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 342 --~~~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
+|.||+-| . +.+..|||+.
T Consensus 639 ~~~G~l~~g~-~-------~Gl~~~~p~~ 659 (795)
T 4a2l_A 639 TSVGQMYFGG-I-------NGITTFRPEL 659 (795)
T ss_dssp CTTSCEEEEE-T-------TEEEEECGGG
T ss_pred CCCCeEEEec-C-------CceEEEcHHH
Confidence 67777654 3 2466777754
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0049 Score=55.66 Aligned_cols=179 Identities=16% Similarity=0.130 Sum_probs=94.3
Q ss_pred CEEEEEECCCCCeEEccCCCCcce-eeeEEEE-C--CEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEE
Q psy2979 167 DIVYVAASMHKILHSLGSLKFDFD-VSGIAML-D--GFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVV 242 (400)
Q Consensus 167 ~~~~~yd~~~~~w~~~~~~~~~r~-~~~~~~~-~--~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~ 242 (400)
..+..||...+++..+..+..... -.+++.. + +.+++.|+.+ ..+..||..+++|..+..+.........+
T Consensus 33 g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~v~~~ 107 (379)
T 3jrp_A 33 KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-----GKVLIWKEENGRWSQIAVHAVHSASVNSV 107 (379)
T ss_dssp SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-----SCEEEEEEETTEEEEEEEECCCSSCEEEE
T ss_pred CcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC-----CEEEEEEcCCCceeEeeeecCCCcceEEE
Confidence 445666665555544443332211 2222222 2 5666777765 35888999999887665444322222223
Q ss_pred Ee--C--CEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCC-CCceeeeEEEE--------------CCeEEEEcCc
Q psy2979 243 AH--E--GMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPML-IPRSGAAICAL--------------DSCIYVLGGW 303 (400)
Q Consensus 243 ~~--~--~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~r~~~~~~~~--------------~~~iyv~GG~ 303 (400)
.+ + +.++++|+. ++ .+..||..+..-.....+. ....-.++... ++..++.|+.
T Consensus 108 ~~~~~~~~~~l~~~~~---d~----~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (379)
T 3jrp_A 108 QWAPHEYGPLLLVASS---DG----KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 180 (379)
T ss_dssp EECCGGGCSEEEEEET---TS----EEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEET
T ss_pred EeCCCCCCCEEEEecC---CC----cEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeC
Confidence 22 3 567777776 43 7888988766321111110 11111122222 3677777776
Q ss_pred CCCCCCCCeEEEEECCCC--eEEEccCCcCccCcceEEEE--C---CEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 304 HASTENTNRVECYHIAEN--TWEYKSPMKEKRYRPGIAVI--D---GKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 304 ~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~--~---~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
...+..||..++ .|.....+...........+ + +++++.|+. + ..|.+||..+.
T Consensus 181 ------dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~-d-----g~i~iwd~~~~ 241 (379)
T 3jrp_A 181 ------DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ-D-----RTCIIWTQDNE 241 (379)
T ss_dssp ------TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET-T-----SCEEEEEESST
T ss_pred ------CCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC-C-----CEEEEEeCCCC
Confidence 346777777544 45544433322222233333 4 788888876 3 35788888775
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.02 Score=52.94 Aligned_cols=225 Identities=9% Similarity=-0.024 Sum_probs=119.7
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeec---CEEEEEECCCCCeEEccCCCCcceeeeEEEE-CC
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIV---DIVYVAASMHKILHSLGSLKFDFDVSGIAML-DG 199 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~---~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~~ 199 (400)
..+..+|.....-..+..-. ..-.+.+.. ++..|+..... ..++.+|..+++...+...+. ...+.+.. ++
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~--~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~--~~~~~~~spdg 234 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSP--QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR--HNGAPAFSPDG 234 (415)
T ss_dssp EEEEEEETTSCSCEEEEEES--SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSS--CEEEEEECTTS
T ss_pred ceEEEEcCCCCCCEEEeCCC--CcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCC--cccCEEEcCCC
Confidence 57888888765544433111 111223333 44423333222 489999999888766554332 11222222 44
Q ss_pred -EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEE-EeCCE-EEEEcCccccCCCCcceEEEEeCCCCcee
Q psy2979 200 -FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVV-AHEGM-LYVTGGAILEDGDGIEQVQRYNPKVNQWQ 276 (400)
Q Consensus 200 -~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~-~~~~~-iyv~GG~~~~~~~~~~~v~~yd~~~~~W~ 276 (400)
.|++.+..++ ...++.+|+.+++...+...+... ...+ .-+++ |++.+.. ++ ...++.+|..+.+-.
T Consensus 235 ~~la~~~~~~g---~~~i~~~d~~~~~~~~l~~~~~~~--~~~~~spdg~~l~~~s~~---~g--~~~i~~~d~~~~~~~ 304 (415)
T 2hqs_A 235 SKLAFALSKTG---SLNLYVMDLASGQIRQVTDGRSNN--TEPTWFPDSQNLAFTSDQ---AG--RPQVYKVNINGGAPQ 304 (415)
T ss_dssp SEEEEEECTTS---SCEEEEEETTTCCEEECCCCSSCE--EEEEECTTSSEEEEEECT---TS--SCEEEEEETTSSCCE
T ss_pred CEEEEEEecCC---CceEEEEECCCCCEEeCcCCCCcc--cceEECCCCCEEEEEECC---CC--CcEEEEEECCCCCEE
Confidence 4555554332 256999999998876665433211 1111 12454 4444332 22 347999999887655
Q ss_pred eccCCCCCceeeeEE-EECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccC
Q psy2979 277 DLAPMLIPRSGAAIC-ALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEG 353 (400)
Q Consensus 277 ~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~ 353 (400)
.+... .......+ .-+++.+++++.... ...++.+|+.+++...+.... ....... +|+.+++++. +
T Consensus 305 ~l~~~--~~~~~~~~~spdG~~l~~~~~~~g---~~~i~~~d~~~~~~~~l~~~~----~~~~~~~spdg~~l~~~s~-~ 374 (415)
T 2hqs_A 305 RITWE--GSQNQDADVSSDGKFMVMVSSNGG---QQHIAKQDLATGGVQVLSSTF----LDETPSLAPNGTMVIYSSS-Q 374 (415)
T ss_dssp ECCCS--SSEEEEEEECTTSSEEEEEEECSS---CEEEEEEETTTCCEEECCCSS----SCEEEEECTTSSEEEEEEE-E
T ss_pred EEecC--CCcccCeEECCCCCEEEEEECcCC---ceEEEEEECCCCCEEEecCCC----CcCCeEEcCCCCEEEEEEc-C
Confidence 44321 11111222 226665555543221 358999999999887665432 2222233 6666666654 2
Q ss_pred CCCCCCeEEEEECCCCcEEEec
Q psy2979 354 WDGYHDSIECYDVDNDSWEIMS 375 (400)
Q Consensus 354 ~~~~~~~v~~yd~~~~~W~~~~ 375 (400)
.. ...++.+|+.++..+.+.
T Consensus 375 ~~--~~~l~~~d~~g~~~~~l~ 394 (415)
T 2hqs_A 375 GM--GSVLNLVSTDGRFKARLP 394 (415)
T ss_dssp TT--EEEEEEEETTSCCEEECC
T ss_pred CC--ccEEEEEECCCCcEEEee
Confidence 11 347999999887766653
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=97.57 E-value=0.01 Score=52.22 Aligned_cols=218 Identities=9% Similarity=0.097 Sum_probs=115.7
Q ss_pred ceEEEEEcCCCceEEccCCc---ccceeeeEEEE-C-CeEEEEEeecCEEEEEECCCCCeEEc-cCCCC--cce-eeeEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLP---FAISKHGLVVS-G-RNTIYCLDIVDIVYVAASMHKILHSL-GSLKF--DFD-VSGIA 195 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~---~~~~~~~~~~~-~-~~~iyv~~~~~~~~~yd~~~~~w~~~-~~~~~--~r~-~~~~~ 195 (400)
..+..||+.++++..+.... ....-++++.. + +. +|+......++.||+. ++...+ ..... +.. -..++
T Consensus 46 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~ 123 (314)
T 1pjx_A 46 GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCA 123 (314)
T ss_dssp CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEE
T ss_pred CEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEE
Confidence 46889998888877654210 11122344444 3 55 8888666689999998 777665 33211 111 12222
Q ss_pred EE-CCEEEEEcccCC----------CCCCCeEEEEeCCCCceEEccC-CCCcccccEEEEe-----CC-EEEEEcCcccc
Q psy2979 196 ML-DGFVYAVGGWDG----------SCRLDSVERYDPTKNEWSYIEP-MKLAVTSPAVVAH-----EG-MLYVTGGAILE 257 (400)
Q Consensus 196 ~~-~~~iyv~GG~~~----------~~~~~~v~~yd~~~~~W~~~~~-l~~~~~~~~~~~~-----~~-~iyv~GG~~~~ 257 (400)
.. ++.+|+.....+ ......+++||+. ++...+.. +..+ ...+.. ++ .+|+....
T Consensus 124 ~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~---~~i~~~~~~d~dg~~l~v~~~~--- 196 (314)
T 1pjx_A 124 FDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFP---NGIAVRHMNDGRPYQLIVAETP--- 196 (314)
T ss_dssp ECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSE---EEEEEEECTTSCEEEEEEEETT---
T ss_pred ECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCc---ceEEEecccCCCCCEEEEEECC---
Confidence 22 678888654321 1122468899987 65544321 1111 223333 34 57887544
Q ss_pred CCCCcceEEEEeCC-CCceee---ccCCCCC--ceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCc
Q psy2979 258 DGDGIEQVQRYNPK-VNQWQD---LAPMLIP--RSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMK 330 (400)
Q Consensus 258 ~~~~~~~v~~yd~~-~~~W~~---~~~~~~~--r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~ 330 (400)
...+++||+. +.++.. ...++.. ..-.+++.- ++.+|+.... ...+.+||+.+++....-..+
T Consensus 197 ----~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~------~~~i~~~d~~~g~~~~~~~~~ 266 (314)
T 1pjx_A 197 ----TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG------SSHIEVFGPDGGQPKMRIRCP 266 (314)
T ss_dssp ----TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET------TTEEEEECTTCBSCSEEEECS
T ss_pred ----CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC------CCEEEEEcCCCCcEeEEEeCC
Confidence 2478899875 333321 1122211 112223332 6788887532 457999999854421111122
Q ss_pred CccCcceEEEE--CCE-EEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 331 EKRYRPGIAVI--DGK-IYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 331 ~~~~~~~~~~~--~~~-lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
. .....+.+ +++ ||+.... ...|++||+...
T Consensus 267 ~--~~~~~i~~~~dg~~l~v~~~~------~~~l~~~~~~~~ 300 (314)
T 1pjx_A 267 F--EKPSNLHFKPQTKTIFVTEHE------NNAVWKFEWQRN 300 (314)
T ss_dssp S--SCEEEEEECTTSSEEEEEETT------TTEEEEEECSSC
T ss_pred C--CCceeEEECCCCCEEEEEeCC------CCeEEEEeCCCC
Confidence 1 22333333 454 8887643 257999998764
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0062 Score=53.56 Aligned_cols=193 Identities=13% Similarity=0.062 Sum_probs=101.9
Q ss_pred EEEE-eecCEEEEEECCCCCeEEccCCCCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCC---
Q psy2979 160 IYCL-DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKL--- 234 (400)
Q Consensus 160 iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~--- 234 (400)
+|++ .....++.||+.+++......... -.+++.. ++.+|+..+ ..+.+||+.+++++.+...+.
T Consensus 27 l~~~d~~~~~i~~~d~~~~~~~~~~~~~~---~~~i~~~~dG~l~v~~~-------~~l~~~d~~~g~~~~~~~~~~~~~ 96 (297)
T 3g4e_A 27 LLFVDIPAKKVCRWDSFTKQVQRVTMDAP---VSSVALRQSGGYVATIG-------TKFCALNWKEQSAVVLATVDNDKK 96 (297)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEECSSC---EEEEEEBTTSSEEEEET-------TEEEEEETTTTEEEEEEECCTTCS
T ss_pred EEEEECCCCEEEEEECCCCcEEEEeCCCc---eEEEEECCCCCEEEEEC-------CeEEEEECCCCcEEEEEecCCCCC
Confidence 7776 345678999998876544332111 1122222 566666532 468999999998877654321
Q ss_pred -cccccEEEEeCCEEEEEcCccccC---CCC-cceEEEEeCCCCceeecc-CCCCCceeeeEEEE-CC-eEEEEcCcCCC
Q psy2979 235 -AVTSPAVVAHEGMLYVTGGAILED---GDG-IEQVQRYNPKVNQWQDLA-PMLIPRSGAAICAL-DS-CIYVLGGWHAS 306 (400)
Q Consensus 235 -~~~~~~~~~~~~~iyv~GG~~~~~---~~~-~~~v~~yd~~~~~W~~~~-~~~~~r~~~~~~~~-~~-~iyv~GG~~~~ 306 (400)
.+....++.-+|++|+..-..... ... ...++++|+.. +...+. .+..+ .+++.. ++ .+|+....
T Consensus 97 ~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~~~p---ngi~~spdg~~lyv~~~~--- 169 (297)
T 3g4e_A 97 NNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQVDIS---NGLDWSLDHKIFYYIDSL--- 169 (297)
T ss_dssp SEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEESBE---EEEEECTTSCEEEEEEGG---
T ss_pred CCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeeccccc---cceEEcCCCCEEEEecCC---
Confidence 222222233367888753110000 001 45799999863 333321 11111 233333 34 58887654
Q ss_pred CCCCCeEEEEEC--CCCeEEE---ccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCC
Q psy2979 307 TENTNRVECYHI--AENTWEY---KSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLP 378 (400)
Q Consensus 307 ~~~~~~v~~yd~--~~~~W~~---~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~ 378 (400)
...+++||. .++.... +..++.....+....+ +|+||+.... ...|.+||+.+++....-.+|
T Consensus 170 ---~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~------~~~v~~~d~~tG~~~~~i~~p 239 (297)
T 3g4e_A 170 ---SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN------GGRVIRLDPVTGKRLQTVKLP 239 (297)
T ss_dssp ---GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET------TTEEEEECTTTCCEEEEEECS
T ss_pred ---CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC------CCEEEEEcCCCceEEEEEECC
Confidence 467888875 5554422 1122211112223333 6889987532 136999999977655443444
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0097 Score=51.38 Aligned_cols=234 Identities=12% Similarity=-0.018 Sum_probs=121.8
Q ss_pred ccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCC-CCeEEccCCCCcceeeeEEE-ECC
Q psy2979 123 VLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMH-KILHSLGSLKFDFDVSGIAM-LDG 199 (400)
Q Consensus 123 ~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~-~~w~~~~~~~~~r~~~~~~~-~~~ 199 (400)
....+..+|+.+++...+...+ ..-.+++.. ++. .+++.....++.+|..+ ++...+...........++. -++
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~~~--~~v~~~~~spdg~-~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg 96 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQTP--ELFEAPNWSPDGK-YLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG 96 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEEES--SCCEEEEECTTSS-EEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS
T ss_pred cceeEEEEeCCCCceeeeccCC--cceEeeEECCCCC-EEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCC
Confidence 3467888898887766543221 112233333 444 44444567899999988 77666553332111122222 255
Q ss_pred EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE-eCC-EEEEEcCccccCCCCcceEEEEeCCCCceee
Q psy2979 200 FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA-HEG-MLYVTGGAILEDGDGIEQVQRYNPKVNQWQD 277 (400)
Q Consensus 200 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~ 277 (400)
+.+++++.... ....++.++..+++...+..... ....+. -++ .|++.++. ++ ...++.+|..+.....
T Consensus 97 ~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~spdg~~l~~~~~~---~~--~~~l~~~~~~~~~~~~ 167 (297)
T 2ojh_A 97 ALYAISDKVEF-GKSAIYLLPSTGGTPRLMTKNLP---SYWHGWSPDGKSFTYCGIR---DQ--VFDIYSMDIDSGVETR 167 (297)
T ss_dssp SEEEEEECTTT-SSCEEEEEETTCCCCEECCSSSS---EEEEEECTTSSEEEEEEEE---TT--EEEEEEEETTTCCEEE
T ss_pred CEEEEEEeCCC-CcceEEEEECCCCceEEeecCCC---ccceEECCCCCEEEEEECC---CC--ceEEEEEECCCCcceE
Confidence 55555443211 34678889988877655543322 112222 244 45545544 33 2367777887777666
Q ss_pred ccCCCCCceeeeEEEECCe-EEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCC
Q psy2979 278 LAPMLIPRSGAAICALDSC-IYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGW 354 (400)
Q Consensus 278 ~~~~~~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~ 354 (400)
+...+... ......-+++ |++.+..++ ...++.+++.++....+..... ....... +++.+++++.+..
T Consensus 168 ~~~~~~~~-~~~~~s~dg~~l~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~ 239 (297)
T 2ojh_A 168 LTHGEGRN-DGPDYSPDGRWIYFNSSRTG----QMQIWRVRVDGSSVERITDSAY---GDWFPHPSPSGDKVVFVSYDAD 239 (297)
T ss_dssp CCCSSSCE-EEEEECTTSSEEEEEECTTS----SCEEEEEETTSSCEEECCCCSE---EEEEEEECTTSSEEEEEEEETT
T ss_pred cccCCCcc-ccceECCCCCEEEEEecCCC----CccEEEECCCCCCcEEEecCCc---ccCCeEECCCCCEEEEEEcCCC
Confidence 54433221 1111222555 444443222 4578899887777766654321 1112222 5554444443121
Q ss_pred CC-----CCCeEEEEECCCCcEEEecC
Q psy2979 355 DG-----YHDSIECYDVDNDSWEIMSH 376 (400)
Q Consensus 355 ~~-----~~~~v~~yd~~~~~W~~~~~ 376 (400)
.. ....+++||..+++...+..
T Consensus 240 ~~~~~~~~~~~l~~~d~~~~~~~~~~~ 266 (297)
T 2ojh_A 240 VFDHPRDLDVRVQLMDMDGGNVETLFD 266 (297)
T ss_dssp CCSCCSSEEEEEEEEETTSCSCEEEEE
T ss_pred CCcccccCceEEEEEecCCCCceeeec
Confidence 11 23579999999987766543
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.04 Score=47.84 Aligned_cols=232 Identities=11% Similarity=0.079 Sum_probs=123.7
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCc--eEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCC--eEEccC
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKV--WKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKI--LHSLGS 184 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~--w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~--w~~~~~ 184 (400)
+.+++.|..+ ..+..+|+.+++ |+.-. +.....+.++.. ++. +++ ...+.+..||+ +++ |+--.+
T Consensus 5 ~~~lv~~~~~-----~~v~~~d~~tG~~~w~~~~--~~~~~~~~~~~~pdG~-ilv-s~~~~V~~~d~-~G~~~W~~~~~ 74 (276)
T 3no2_A 5 QHLLVGGSGW-----NKIAIINKDTKEIVWEYPL--EKGWECNSVAATKAGE-ILF-SYSKGAKMITR-DGRELWNIAAP 74 (276)
T ss_dssp CEEEEECTTC-----SEEEEEETTTTEEEEEEEC--CTTCCCCEEEECTTSC-EEE-ECBSEEEEECT-TSCEEEEEECC
T ss_pred CcEEEeeCCC-----CEEEEEECCCCeEEEEeCC--CccCCCcCeEECCCCC-EEE-eCCCCEEEECC-CCCEEEEEcCC
Confidence 3455555433 577889988876 65322 211123444444 555 777 55678999999 554 654332
Q ss_pred CCCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCC-ceEEc--cCCCCc--ccccEEEEeCCEEEEEcCccccC
Q psy2979 185 LKFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKN-EWSYI--EPMKLA--VTSPAVVAHEGMLYVTGGAILED 258 (400)
Q Consensus 185 ~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~-~W~~~--~~l~~~--~~~~~~~~~~~~iyv~GG~~~~~ 258 (400)
.....+++..+ ++.+++..+.. ...+..+|+..+ .|+.. ...+.+ .........++.+++....
T Consensus 75 --~~~~~~~~~~~~dG~~lv~~~~~----~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~---- 144 (276)
T 3no2_A 75 --AGCEMQTARILPDGNALVAWCGH----PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA---- 144 (276)
T ss_dssp --TTCEEEEEEECTTSCEEEEEEST----TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT----
T ss_pred --CCccccccEECCCCCEEEEecCC----CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC----
Confidence 11122333333 66666654321 235778888544 24332 111111 1222234456777776544
Q ss_pred CCCcceEEEEeCCCCc-eeeccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCe--EEEcc-CCcCcc
Q psy2979 259 GDGIEQVQRYNPKVNQ-WQDLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENT--WEYKS-PMKEKR 333 (400)
Q Consensus 259 ~~~~~~v~~yd~~~~~-W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~-~~~~~~ 333 (400)
...+.+||+..+. |+.-.+ ..+ +++... ++.+++.+.. ...+..+|+.+++ |+.-. ..+..+
T Consensus 145 ---~~~v~~~d~~G~~~w~~~~~-~~~---~~~~~~~~g~~~v~~~~------~~~v~~~d~~tG~~~w~~~~~~~~~~~ 211 (276)
T 3no2_A 145 ---TSEVREIAPNGQLLNSVKLS-GTP---FSSAFLDNGDCLVACGD------AHCFVQLNLESNRIVRRVNANDIEGVQ 211 (276)
T ss_dssp ---TTEEEEECTTSCEEEEEECS-SCC---CEEEECTTSCEEEECBT------TSEEEEECTTTCCEEEEEEGGGSBSCC
T ss_pred ---CCEEEEECCCCCEEEEEECC-CCc---cceeEcCCCCEEEEeCC------CCeEEEEeCcCCcEEEEecCCCCCCcc
Confidence 2479999997443 765432 111 233334 7788887754 3579999999664 77643 222222
Q ss_pred -Ccc-eEEEE-CCEEEEEc--CccCC---CCCCCeEEEEECCCC-cEEEec
Q psy2979 334 -YRP-GIAVI-DGKIYVLG--GEEGW---DGYHDSIECYDVDND-SWEIMS 375 (400)
Q Consensus 334 -~~~-~~~~~-~~~lyv~G--G~~~~---~~~~~~v~~yd~~~~-~W~~~~ 375 (400)
... ++... +|.+|+.. |. .. ......++.+|+..+ .|+.-.
T Consensus 212 l~~~~~~~~~~~G~i~v~~~~g~-~~~~~~~~~~~~~~~~~~g~~~W~~~~ 261 (276)
T 3no2_A 212 LFFVAQLFPLQNGGLYICNWQGH-DREAGKGKHPQLVEIDSEGKVVWQLND 261 (276)
T ss_dssp CSEEEEEEECTTSCEEEEEECTT-CTTGGGSCCCSEEEECTTSBEEEEECC
T ss_pred ccccccceEcCCCCEEEEeccCc-cccccccCCceEEEECCCCCEEEEecC
Confidence 122 23333 88999987 43 21 001235677777554 377543
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=97.51 E-value=0.011 Score=51.85 Aligned_cols=188 Identities=12% Similarity=0.073 Sum_probs=101.0
Q ss_pred CCeEEEEE--------eecCEEEEEECCCCCeEEccCCC---CcceeeeEEEE-C-CEEEEEcccCCCCCCCeEEEEeCC
Q psy2979 156 GRNTIYCL--------DIVDIVYVAASMHKILHSLGSLK---FDFDVSGIAML-D-GFVYAVGGWDGSCRLDSVERYDPT 222 (400)
Q Consensus 156 ~~~~iyv~--------~~~~~~~~yd~~~~~w~~~~~~~---~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~v~~yd~~ 222 (400)
++. +|+. .....+..||+.++++....... ....-.+++.. + +.+|+.+.. ..+.+||+.
T Consensus 28 ~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~------~~l~~~d~~ 100 (314)
T 1pjx_A 28 NGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR------LGLLVVQTD 100 (314)
T ss_dssp TSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT------TEEEEEETT
T ss_pred CCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC------CCEEEEeCC
Confidence 445 7766 34567899998888887654310 11112233332 4 788887541 368999998
Q ss_pred CCceEEc-cCCCCc---ccccEEEE-eCCEEEEEcCccccCC---------C-C-cceEEEEeCCCCceeecc-CCCCCc
Q psy2979 223 KNEWSYI-EPMKLA---VTSPAVVA-HEGMLYVTGGAILEDG---------D-G-IEQVQRYNPKVNQWQDLA-PMLIPR 285 (400)
Q Consensus 223 ~~~W~~~-~~l~~~---~~~~~~~~-~~~~iyv~GG~~~~~~---------~-~-~~~v~~yd~~~~~W~~~~-~~~~~r 285 (400)
++...+ ...... ..-..++. -++.+|+.... ++ . . ...+++||+. .+...+. .+..+
T Consensus 101 -g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~- 174 (314)
T 1pjx_A 101 -GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPA---GEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFP- 174 (314)
T ss_dssp -SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECB---CBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSE-
T ss_pred -CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecC---cccccccccccccCCCCeEEEECCC-CCEEEeccCCCCc-
Confidence 777665 322211 11223333 36789987643 20 0 0 3579999987 5554432 11122
Q ss_pred eeeeEEEE-----CC-eEEEEcCcCCCCCCCCeEEEEECC-CCeEEE---ccCCcCcc-CcceEEEE--CCEEEEEcCcc
Q psy2979 286 SGAAICAL-----DS-CIYVLGGWHASTENTNRVECYHIA-ENTWEY---KSPMKEKR-YRPGIAVI--DGKIYVLGGEE 352 (400)
Q Consensus 286 ~~~~~~~~-----~~-~iyv~GG~~~~~~~~~~v~~yd~~-~~~W~~---~~~~~~~~-~~~~~~~~--~~~lyv~GG~~ 352 (400)
.+++.. ++ .+|+.... ...+++||+. ++++.. ...++... ..+..... +|++|+....
T Consensus 175 --~~i~~~~~~d~dg~~l~v~~~~------~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~- 245 (314)
T 1pjx_A 175 --NGIAVRHMNDGRPYQLIVAETP------TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG- 245 (314)
T ss_dssp --EEEEEEECTTSCEEEEEEEETT------TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET-
T ss_pred --ceEEEecccCCCCCEEEEEECC------CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC-
Confidence 223333 34 57777543 4689999876 444322 11222111 12222333 6888887532
Q ss_pred CCCCCCCeEEEEECCCCc
Q psy2979 353 GWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 353 ~~~~~~~~v~~yd~~~~~ 370 (400)
...|.+||+.+++
T Consensus 246 -----~~~i~~~d~~~g~ 258 (314)
T 1pjx_A 246 -----SSHIEVFGPDGGQ 258 (314)
T ss_dssp -----TTEEEEECTTCBS
T ss_pred -----CCEEEEEcCCCCc
Confidence 2478999998544
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.052 Score=50.66 Aligned_cols=218 Identities=11% Similarity=0.065 Sum_probs=109.2
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEEE---CCEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML---DGFV 201 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~---~~~i 201 (400)
..+..||..+++-...-. .....-.+++...+..++.......+..+|..+++-...-.- ....-.++... ++..
T Consensus 142 g~i~vwd~~~~~~~~~~~-~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~ 219 (464)
T 3v7d_B 142 KMIRVYDSINKKFLLQLS-GHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEG-HNSTVRCLDIVEYKNIKY 219 (464)
T ss_dssp SCEEEEETTTTEEEEEEC-CCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEEESSSCEE
T ss_pred CcEEEEECCCCcEEEEEe-CCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECC-CCCccEEEEEecCCCCCE
Confidence 468888887765322111 111122333444443144335556788889887653221110 11111122222 4577
Q ss_pred EEEcccCCCCCCCeEEEEeCCCCceEEcc---------------------CCCCcccccEEEEeCCEEEEEcCccccCCC
Q psy2979 202 YAVGGWDGSCRLDSVERYDPTKNEWSYIE---------------------PMKLAVTSPAVVAHEGMLYVTGGAILEDGD 260 (400)
Q Consensus 202 yv~GG~~~~~~~~~v~~yd~~~~~W~~~~---------------------~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~ 260 (400)
++.|+.++ .+..||..+.+-.... .+............++..++.|+. ++
T Consensus 220 l~s~s~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~---d~- 290 (464)
T 3v7d_B 220 IVTGSRDN-----TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY---DN- 290 (464)
T ss_dssp EEEEETTS-----CEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEET---TS-
T ss_pred EEEEcCCC-----cEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeC---CC-
Confidence 77777653 4777777765421110 000001111122345566677776 44
Q ss_pred CcceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEE
Q psy2979 261 GIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAV 340 (400)
Q Consensus 261 ~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~ 340 (400)
.+..||..+.+-...-..............++..++.|+. ...+..||..+++-... +...........
T Consensus 291 ---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~------dg~i~vwd~~~~~~~~~--~~~h~~~v~~~~ 359 (464)
T 3v7d_B 291 ---TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM------DTTIRIWDLENGELMYT--LQGHTALVGLLR 359 (464)
T ss_dssp ---CEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEET------TSCEEEEETTTTEEEEE--ECCCSSCEEEEE
T ss_pred ---eEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeC------CCcEEEEECCCCcEEEE--EeCCCCcEEEEE
Confidence 6899998766532221111111111222225667777765 45799999987763322 222222234455
Q ss_pred ECCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 341 IDGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 341 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
.++..++.|+. + ..|.+||+.+..
T Consensus 360 ~~~~~l~s~s~-d-----g~v~vwd~~~~~ 383 (464)
T 3v7d_B 360 LSDKFLVSAAA-D-----GSIRGWDANDYS 383 (464)
T ss_dssp ECSSEEEEEET-T-----SEEEEEETTTCC
T ss_pred EcCCEEEEEeC-C-----CcEEEEECCCCc
Confidence 56777777776 2 468899998765
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.028 Score=49.90 Aligned_cols=177 Identities=11% Similarity=0.093 Sum_probs=91.4
Q ss_pred eecCEEEEEECCCCCeEEccCCCCcceeeeEEE-ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEE
Q psy2979 164 DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAM-LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVV 242 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~ 242 (400)
.....+..+|..+++-...-... +....+++. -+++.++.|+.+ ..+..||..+++-...-..... .-.+++
T Consensus 99 s~D~~i~lWd~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~g~~d-----g~v~i~~~~~~~~~~~~~~~~~-~v~~~~ 171 (321)
T 3ow8_A 99 SLDAHIRLWDLENGKQIKSIDAG-PVDAWTLAFSPDSQYLATGTHV-----GKVNIFGVESGKKEYSLDTRGK-FILSIA 171 (321)
T ss_dssp ETTSEEEEEETTTTEEEEEEECC-TTCCCCEEECTTSSEEEEECTT-----SEEEEEETTTCSEEEEEECSSS-CEEEEE
T ss_pred eCCCcEEEEECCCCCEEEEEeCC-CccEEEEEECCCCCEEEEEcCC-----CcEEEEEcCCCceeEEecCCCc-eEEEEE
Confidence 44567788888776532211110 111111222 255666667654 4578888877653321111111 111122
Q ss_pred -EeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCcee-eeEE-EECCeEEEEcCcCCCCCCCCeEEEEECC
Q psy2979 243 -AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSG-AAIC-ALDSCIYVLGGWHASTENTNRVECYHIA 319 (400)
Q Consensus 243 -~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~-~~~~-~~~~~iyv~GG~~~~~~~~~~v~~yd~~ 319 (400)
.-+++.++.|+. ++ .+..||..+.+-... +...... .+++ .-++.+++.|+. ...+..||..
T Consensus 172 ~spdg~~lasg~~---dg----~i~iwd~~~~~~~~~--~~~h~~~v~~l~~spd~~~l~s~s~------dg~i~iwd~~ 236 (321)
T 3ow8_A 172 YSPDGKYLASGAI---DG----IINIFDIATGKLLHT--LEGHAMPIRSLTFSPDSQLLVTASD------DGYIKIYDVQ 236 (321)
T ss_dssp ECTTSSEEEEEET---TS----CEEEEETTTTEEEEE--ECCCSSCCCEEEECTTSCEEEEECT------TSCEEEEETT
T ss_pred ECCCCCEEEEEcC---CC----eEEEEECCCCcEEEE--EcccCCceeEEEEcCCCCEEEEEcC------CCeEEEEECC
Confidence 236777788877 54 688999877653221 1111111 1222 226777888876 4578899988
Q ss_pred CCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 320 ENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 320 ~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
+...... +.........+.+ +++.++.|+. + ..|.+||..+.+
T Consensus 237 ~~~~~~~--~~~h~~~v~~~~~sp~~~~l~s~s~-D-----~~v~iwd~~~~~ 281 (321)
T 3ow8_A 237 HANLAGT--LSGHASWVLNVAFCPDDTHFVSSSS-D-----KSVKVWDVGTRT 281 (321)
T ss_dssp TCCEEEE--ECCCSSCEEEEEECTTSSEEEEEET-T-----SCEEEEETTTTE
T ss_pred CcceeEE--EcCCCCceEEEEECCCCCEEEEEeC-C-----CcEEEEeCCCCE
Confidence 7654322 1111111122333 5677777776 2 368889988764
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=97.47 E-value=0.047 Score=47.86 Aligned_cols=226 Identities=12% Similarity=0.086 Sum_probs=113.8
Q ss_pred EEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCCcc
Q psy2979 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDF 189 (400)
Q Consensus 111 ~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r 189 (400)
..++.|+.+ ..+..++..+++....-.. ....-.+++.. ++..++.......+..||..+++-... +....
T Consensus 36 ~~l~s~~~d-----g~i~iw~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~--~~~~~ 107 (312)
T 4ery_A 36 EWLASSSAD-----KLIKIWGAYDGKFEKTISG-HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHS 107 (312)
T ss_dssp SEEEEEETT-----SCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE--EECCS
T ss_pred CEEEEeeCC-----CeEEEEeCCCcccchhhcc-CCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEE--EcCCC
Confidence 344555544 3577888877765432211 11111233333 333133335556788889877653221 11111
Q ss_pred e-eeeEEE-ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE--eCCEEEEEcCccccCCCCcceE
Q psy2979 190 D-VSGIAM-LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA--HEGMLYVTGGAILEDGDGIEQV 265 (400)
Q Consensus 190 ~-~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~v 265 (400)
. -.++.. -++..++.|+.+ ..+..||+.+++-... ++.......... -++.+++.|+. ++ .+
T Consensus 108 ~~v~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~---d~----~i 173 (312)
T 4ery_A 108 NYVFCCNFNPQSNLIVSGSFD-----ESVRIWDVKTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSY---DG----LC 173 (312)
T ss_dssp SCEEEEEECSSSSEEEEEETT-----SCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEET---TS----CE
T ss_pred CCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCEEEEE--ecCCCCcEEEEEEcCCCCEEEEEeC---CC----cE
Confidence 1 111111 145666777765 3588899887754322 111111112222 25677778877 44 68
Q ss_pred EEEeCCCCceeecc-CCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEcc-CCcCccCcceE-EE-E
Q psy2979 266 QRYNPKVNQWQDLA-PMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKS-PMKEKRYRPGI-AV-I 341 (400)
Q Consensus 266 ~~yd~~~~~W~~~~-~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~~~~~~~-~~-~ 341 (400)
..||..+.+....- ....+........-++..++.|+. ...+..||..+.+-...- ........... .. .
T Consensus 174 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (312)
T 4ery_A 174 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL------DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 247 (312)
T ss_dssp EEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET------TTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECS
T ss_pred EEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC------CCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeC
Confidence 89998776543221 111111111122226677777765 468999999887643321 11111111111 11 2
Q ss_pred CCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 342 DGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 342 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
++++++.|+. + ..|.+||..+++
T Consensus 248 ~~~~l~sg~~-d-----g~i~vwd~~~~~ 270 (312)
T 4ery_A 248 GGKWIVSGSE-D-----NLVYIWNLQTKE 270 (312)
T ss_dssp SSCEEEECCT-T-----SCEEEEETTTCC
T ss_pred CCcEEEEECC-C-----CEEEEEECCCch
Confidence 5777777776 2 468899988765
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.03 Score=51.36 Aligned_cols=244 Identities=11% Similarity=0.022 Sum_probs=122.7
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYA 203 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv 203 (400)
..+..||..+++............-.+++.. ++..+++......+..||..+++....-. ...........++.+++
T Consensus 113 ~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~l~ 190 (401)
T 4aez_A 113 RNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA--GHQARVGCLSWNRHVLS 190 (401)
T ss_dssp TEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEEETTEEE
T ss_pred CeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEec--CCCCceEEEEECCCEEE
Confidence 4788999988886654433322233344443 33413333555678889988765432211 11111222233566667
Q ss_pred EcccCCCCCCCeEEEEeCCCCce--EEccCCCCcccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceee-cc
Q psy2979 204 VGGWDGSCRLDSVERYDPTKNEW--SYIEPMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQD-LA 279 (400)
Q Consensus 204 ~GG~~~~~~~~~v~~yd~~~~~W--~~~~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~-~~ 279 (400)
.|+.+ ..+..||..+..- ..+....... .+++. -++..++.|+. ++ .+..||..+.+-.. +.
T Consensus 191 ~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~s~~~---d~----~v~iwd~~~~~~~~~~~ 256 (401)
T 4aez_A 191 SGSRS-----GAIHHHDVRIANHQIGTLQGHSSEV--CGLAWRSDGLQLASGGN---DN----VVQIWDARSSIPKFTKT 256 (401)
T ss_dssp EEETT-----SEEEEEETTSSSCEEEEEECCSSCE--EEEEECTTSSEEEEEET---TS----CEEEEETTCSSEEEEEC
T ss_pred EEcCC-----CCEEEEecccCcceeeEEcCCCCCe--eEEEEcCCCCEEEEEeC---CC----eEEEccCCCCCccEEec
Confidence 77755 4688888874321 1111111111 11222 26777788877 44 68999987654322 11
Q ss_pred CCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCE-EEEEcCccCC
Q psy2979 280 PMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGK-IYVLGGEEGW 354 (400)
Q Consensus 280 ~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~-lyv~GG~~~~ 354 (400)
.... .-.+++.. +..+++.||... ...+..||..+++....-... .....+.+ +++ +++.+|. .
T Consensus 257 ~~~~--~v~~~~~~p~~~~ll~~~~gs~----d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~g~-~- 325 (401)
T 4aez_A 257 NHNA--AVKAVAWCPWQSNLLATGGGTM----DKQIHFWNAATGARVNTVDAG---SQVTSLIWSPHSKEIMSTHGF-P- 325 (401)
T ss_dssp CCSS--CCCEEEECTTSTTEEEEECCTT----TCEEEEEETTTCCEEEEEECS---SCEEEEEECSSSSEEEEEECT-T-
T ss_pred CCcc--eEEEEEECCCCCCEEEEecCCC----CCEEEEEECCCCCEEEEEeCC---CcEEEEEECCCCCeEEEEeec-C-
Confidence 1111 11222222 446777764111 457999998877643322211 11222233 444 4444343 1
Q ss_pred CCCCCeEEEEECCCCcEEEecCCCCCC-CceeeEEEccccccccc
Q psy2979 355 DGYHDSIECYDVDNDSWEIMSHLPSAR-SWLGCVPLQIHKSQFVD 398 (400)
Q Consensus 355 ~~~~~~v~~yd~~~~~W~~~~~~~~~r-~~~~~~~~~~~~~~~~~ 398 (400)
...|.+||..+........++... .-.+++...+..+++.+
T Consensus 326 ---dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~ 367 (401)
T 4aez_A 326 ---DNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTA 367 (401)
T ss_dssp ---TCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEE
T ss_pred ---CCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEE
Confidence 247889998887776654433222 22334444444555444
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.021 Score=52.29 Aligned_cols=224 Identities=13% Similarity=0.059 Sum_probs=106.9
Q ss_pred EEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCCcc
Q psy2979 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDF 189 (400)
Q Consensus 111 ~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r 189 (400)
..++.|+.+ ..+..||........+..- ...-.+++.. ++..++.......+..+|..+++....-......
T Consensus 121 ~~l~~~~~d-----g~i~i~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 193 (425)
T 1r5m_A 121 NSIVTGVEN-----GELRLWNKTGALLNVLNFH--RAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETG 193 (425)
T ss_dssp SEEEEEETT-----SCEEEEETTSCEEEEECCC--CSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---
T ss_pred CEEEEEeCC-----CeEEEEeCCCCeeeeccCC--CccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccC
Confidence 344555544 3577788433333333211 1112233333 3331333355567888888776543322211111
Q ss_pred --------------eeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEE-EeCCEEEEEcCc
Q psy2979 190 --------------DVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVV-AHEGMLYVTGGA 254 (400)
Q Consensus 190 --------------~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~-~~~~~iyv~GG~ 254 (400)
...++....+..+++|+.+ ..+..||..+++-...-...... -.+++ .-++..+++|+.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~i~~~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~ 267 (425)
T 1r5m_A 194 GSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK-----GAIFVYQITEKTPTGKLIGHHGP-ISVLEFNDTNKLLLSASD 267 (425)
T ss_dssp ------------CCCBSCCEEEETTEEEEECGG-----GCEEEEETTCSSCSEEECCCSSC-EEEEEEETTTTEEEEEET
T ss_pred ccceeeccccCCcceeeEEEEcCCCEEEEEcCC-----CeEEEEEcCCCceeeeeccCCCc-eEEEEECCCCCEEEEEcC
Confidence 0222333333345666654 45888998876432111111111 11222 225667777776
Q ss_pred cccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCcc
Q psy2979 255 ILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKR 333 (400)
Q Consensus 255 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~ 333 (400)
++ .+..||..+.+....-.. ......++... ++ .++.|+. ...+..||..+.+-...-.. ..
T Consensus 268 ---d~----~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~-~l~~~~~------d~~i~i~d~~~~~~~~~~~~--~~ 330 (425)
T 1r5m_A 268 ---DG----TLRIWHGGNGNSQNCFYG-HSQSIVSASWVGDD-KVISCSM------DGSVRLWSLKQNTLLALSIV--DG 330 (425)
T ss_dssp ---TS----CEEEECSSSBSCSEEECC-CSSCEEEEEEETTT-EEEEEET------TSEEEEEETTTTEEEEEEEC--TT
T ss_pred ---CC----EEEEEECCCCccceEecC-CCccEEEEEECCCC-EEEEEeC------CCcEEEEECCCCcEeEeccc--CC
Confidence 43 688898766542221111 11122233333 45 6666665 46899999987764332211 11
Q ss_pred CcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 334 YRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 334 ~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
.....+.+ ++++++.|+. + ..|.+||..+..
T Consensus 331 ~~i~~~~~s~~~~~l~~~~~-d-----g~i~i~~~~~~~ 363 (425)
T 1r5m_A 331 VPIFAGRISQDGQKYAVAFM-D-----GQVNVYDLKKLN 363 (425)
T ss_dssp CCEEEEEECTTSSEEEEEET-T-----SCEEEEECHHHH
T ss_pred ccEEEEEEcCCCCEEEEEEC-C-----CeEEEEECCCCc
Confidence 12222333 5677777765 2 368888887654
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.012 Score=52.19 Aligned_cols=209 Identities=12% Similarity=0.055 Sum_probs=105.1
Q ss_pred EEEE-eecCEEEEEECCCCCeEEccCCCCcceeeeEEEE-CC-EEEEEcccCCCCCCCeEEEEeCCCCce-EE-ccCCCC
Q psy2979 160 IYCL-DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML-DG-FVYAVGGWDGSCRLDSVERYDPTKNEW-SY-IEPMKL 234 (400)
Q Consensus 160 iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W-~~-~~~l~~ 234 (400)
+|+. .....+..+|+.+++....-..+.. ...++.- ++ .+|+.+..+ ..+..||+.+++. .. +..-..
T Consensus 12 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~~~~ 84 (331)
T 3u4y_A 12 GIVVEQHLRRISFFSTDTLEILNQITLGYD--FVDTAITSDCSNVVVTSDFC-----QTLVQIETQLEPPKVVAIQEGQS 84 (331)
T ss_dssp EEEEEGGGTEEEEEETTTCCEEEEEECCCC--EEEEEECSSSCEEEEEESTT-----CEEEEEECSSSSCEEEEEEECSS
T ss_pred EEEEecCCCeEEEEeCcccceeeeEEccCC--cceEEEcCCCCEEEEEeCCC-----CeEEEEECCCCceeEEecccCCC
Confidence 6666 4456899999998887654443321 1233322 44 577776533 3799999998874 22 222111
Q ss_pred cccccEEEE-e-CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CC-eEEEEcCcCCCCCCC
Q psy2979 235 AVTSPAVVA-H-EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DS-CIYVLGGWHASTENT 310 (400)
Q Consensus 235 ~~~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~ 310 (400)
+ .++++. - +..+| ++.. ++. ...+..||..+.+....-+.. ...+.++.. ++ .+|+.+.. .
T Consensus 85 ~--~~~~~~s~dg~~l~-~~~~---~~~-~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~spdg~~l~~~~~~------~ 149 (331)
T 3u4y_A 85 S--MADVDITPDDQFAV-TVTG---LNH-PFNMQSYSFLKNKFISTIPIP--YDAVGIAISPNGNGLILIDRS------S 149 (331)
T ss_dssp C--CCCEEECTTSSEEE-ECCC---SSS-SCEEEEEETTTTEEEEEEECC--TTEEEEEECTTSSCEEEEEET------T
T ss_pred C--ccceEECCCCCEEE-EecC---CCC-cccEEEEECCCCCeEEEEECC--CCccceEECCCCCEEEEEecC------C
Confidence 2 221222 2 34566 4332 110 227999999887754432222 122333333 44 47777643 2
Q ss_pred Ce-EEEEECCCCe-EEEc--cCCcCccCcceEEEE--CC-EEEEEcCccCCCCCCCeEEEEECCCCcE-EEecCCCCCCC
Q psy2979 311 NR-VECYHIAENT-WEYK--SPMKEKRYRPGIAVI--DG-KIYVLGGEEGWDGYHDSIECYDVDNDSW-EIMSHLPSARS 382 (400)
Q Consensus 311 ~~-v~~yd~~~~~-W~~~--~~~~~~~~~~~~~~~--~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~r~ 382 (400)
.. +..|+...+. .... ...+.. .......+ ++ .+|+.+.. .+.|.+||+.+++. +.+..++....
T Consensus 150 ~~~i~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~------~~~v~v~d~~~~~~~~~~~~~~~~~~ 222 (331)
T 3u4y_A 150 ANTVRRFKIDADGVLFDTGQEFISGG-TRPFNITFTPDGNFAFVANLI------GNSIGILETQNPENITLLNAVGTNNL 222 (331)
T ss_dssp TTEEEEEEECTTCCEEEEEEEEECSS-SSEEEEEECTTSSEEEEEETT------TTEEEEEECSSTTSCEEEEEEECSSC
T ss_pred CceEEEEEECCCCcEeecCCccccCC-CCccceEECCCCCEEEEEeCC------CCeEEEEECCCCcccceeeeccCCCC
Confidence 34 6666654321 1111 111111 12223333 45 48887644 25799999988765 11233333333
Q ss_pred ceeeEEEcccccccc
Q psy2979 383 WLGCVPLQIHKSQFV 397 (400)
Q Consensus 383 ~~~~~~~~~~~~~~~ 397 (400)
-.++++-.+..++++
T Consensus 223 ~~~~~~spdg~~l~v 237 (331)
T 3u4y_A 223 PGTIVVSRDGSTVYV 237 (331)
T ss_dssp CCCEEECTTSSEEEE
T ss_pred CceEEECCCCCEEEE
Confidence 345555555554443
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.055 Score=47.45 Aligned_cols=227 Identities=11% Similarity=-0.027 Sum_probs=108.9
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEE-ccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCC-
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKT-LSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLK- 186 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~-~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~- 186 (400)
+..++.|+.+ ..+..+|..+++-.. +..-..+ -.++... ++..++.......+..+|..+++-.. .+.
T Consensus 25 ~~~l~s~~~d-----g~v~lWd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~--~~~~ 95 (304)
T 2ynn_A 25 EPWVLTTLYS-----GRVELWNYETQVEVRSIQVTETP--VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV--DFEA 95 (304)
T ss_dssp SSEEEEEETT-----SEEEEEETTTTEEEEEEECCSSC--EEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEE--EEEC
T ss_pred CCEEEEEcCC-----CcEEEEECCCCceeEEeeccCCc--EEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEE--EEeC
Confidence 3445566654 467888887765332 1111111 1122232 33313333555678888987765321 111
Q ss_pred CcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccc-cEEEEe--CCEEEEEcCccccCCCCc
Q psy2979 187 FDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTS-PAVVAH--EGMLYVTGGAILEDGDGI 262 (400)
Q Consensus 187 ~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~-~~~~~~--~~~iyv~GG~~~~~~~~~ 262 (400)
....-.+++.. ++.+++.|+.+ ..+..||..++. .....+...... .+++.. ++.+++.|+. ++
T Consensus 96 h~~~v~~~~~~~~~~~l~sgs~D-----~~v~lWd~~~~~-~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~---D~--- 163 (304)
T 2ynn_A 96 HPDYIRSIAVHPTKPYVLSGSDD-----LTVKLWNWENNW-ALEQTFEGHEHFVMCVAFNPKDPSTFASGCL---DR--- 163 (304)
T ss_dssp CSSCEEEEEECSSSSEEEEEETT-----SCEEEEEGGGTT-EEEEEECCCCSCEEEEEECTTCTTEEEEEET---TS---
T ss_pred CCCcEEEEEEcCCCCEEEEECCC-----CeEEEEECCCCc-chhhhhcccCCcEEEEEECCCCCCEEEEEeC---CC---
Confidence 11111122222 45666777765 357888876552 111111111111 122222 4567888887 54
Q ss_pred ceEEEEeCCCCceeeccCCCCCceeeeEEEE---CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEE
Q psy2979 263 EQVQRYNPKVNQWQDLAPMLIPRSGAAICAL---DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIA 339 (400)
Q Consensus 263 ~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~ 339 (400)
.+..||..+..-...-.....+....+... ++.+++.|+. ...+..||..+.+-.. .+.........+
T Consensus 164 -~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~------D~~i~iWd~~~~~~~~--~~~~h~~~v~~~ 234 (304)
T 2ynn_A 164 -TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD------DLTIKIWDYQTKSCVA--TLEGHMSNVSFA 234 (304)
T ss_dssp -EEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET------TSEEEEEETTTTEEEE--EEECCSSCEEEE
T ss_pred -eEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC------CCeEEEEeCCCCccce--eeCCCCCCEEEE
Confidence 788888754431111001111111111111 4556667765 4689999998875332 111111122223
Q ss_pred EE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEE
Q psy2979 340 VI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWE 372 (400)
Q Consensus 340 ~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~ 372 (400)
.+ ++.+++.|+. + ..|.+||..+.+-.
T Consensus 235 ~~~p~~~~l~s~s~-D-----g~i~iWd~~~~~~~ 263 (304)
T 2ynn_A 235 VFHPTLPIIISGSE-D-----GTLKIWNSSTYKVE 263 (304)
T ss_dssp EECSSSSEEEEEET-T-----SCEEEEETTTCCEE
T ss_pred EECCCCCEEEEEcC-C-----CeEEEEECCCCcee
Confidence 33 5667777776 3 35788998776533
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.063 Score=51.85 Aligned_cols=259 Identities=12% Similarity=0.048 Sum_probs=133.7
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCCc
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFD 188 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~ 188 (400)
+.+++.... ...+.++|..+++-.. .++....-|.++.. +++.+|+......+..+|+...+-+.+..++..
T Consensus 167 ~~~~V~~~~-----~~~V~viD~~t~~v~~--~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G 239 (567)
T 1qks_A 167 NLFSVTLRD-----AGQIALIDGSTYEIKT--VLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG 239 (567)
T ss_dssp GEEEEEETT-----TTEEEEEETTTCCEEE--EEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC
T ss_pred ceEEEEeCC-----CCeEEEEECCCCeEEE--EEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC
Confidence 566666442 3588899998876442 22333333455554 444478776667899999852222222333222
Q ss_pred ceeeeEEEE-----CC-EEEEEcccCCCCCCCeEEEEeCCCCceEEc-c--CC--------CCcccccEEEEeCCEEEEE
Q psy2979 189 FDVSGIAML-----DG-FVYAVGGWDGSCRLDSVERYDPTKNEWSYI-E--PM--------KLAVTSPAVVAHEGMLYVT 251 (400)
Q Consensus 189 r~~~~~~~~-----~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~--~l--------~~~~~~~~~~~~~~~iyv~ 251 (400)
..-..++.. ++ .+|+..-.. .++..+|..+.+=... + .+ |.+|...-.+..++..+++
T Consensus 240 ~~P~~ia~s~~~~pDGk~l~v~n~~~-----~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv 314 (567)
T 1qks_A 240 SEARSIETSKMEGWEDKYAIAGAYWP-----PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV 314 (567)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEET-----TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEE
T ss_pred CCCceeEEccccCCCCCEEEEEEccC-----CeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEE
Confidence 222233333 34 677764332 5678888776543221 1 11 1122222222233333333
Q ss_pred cCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCe-EEEEcCcCCCCCCCCeEEEEECCCCeEEEc---
Q psy2979 252 GGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSC-IYVLGGWHASTENTNRVECYHIAENTWEYK--- 326 (400)
Q Consensus 252 GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~--- 326 (400)
.-. + ...++..|..+.....+..++..+..|....- +++ +|+.... .+++..+|..+++-...
T Consensus 315 ~~~---~---~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~------sn~V~ViD~~t~kl~~~i~v 382 (567)
T 1qks_A 315 NVK---E---TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANA------RNKLVVIDTKEGKLVAIEDT 382 (567)
T ss_dssp EET---T---TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGG------GTEEEEEETTTTEEEEEEEC
T ss_pred Eec---C---CCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCC------CCeEEEEECCCCcEEEEEec
Confidence 211 1 34788888877665555555555555554433 444 4444333 57899999999874322
Q ss_pred -cCCcCccCcceEEEE-CCEEEEEcCccCCCCCCCeEEEEECCCCc-----EEEecCCCCC-CCceeeEEEcccccccc
Q psy2979 327 -SPMKEKRYRPGIAVI-DGKIYVLGGEEGWDGYHDSIECYDVDNDS-----WEIMSHLPSA-RSWLGCVPLQIHKSQFV 397 (400)
Q Consensus 327 -~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~-----W~~~~~~~~~-r~~~~~~~~~~~~~~~~ 397 (400)
...|.+..+.....- ++.+|+.+-. + ...|.++|..+.. |+.+..++.. .....+.+..+..++++
T Consensus 383 gg~~Phpg~g~~~~~p~~g~v~~t~~~-g----~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v 456 (567)
T 1qks_A 383 GGQTPHPGRGANFVHPTFGPVWATSHM-G----DDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYV 456 (567)
T ss_dssp SSSSBCCTTCEEEEETTTEEEEEEEBS-S----SSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEE
T ss_pred cCcCCCCccceeeECCCCCcEEEeCCC-C----CCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEE
Confidence 223333222222111 3678877633 1 2468888876633 8887665542 22233444455555554
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.095 Score=48.82 Aligned_cols=148 Identities=11% Similarity=0.159 Sum_probs=82.2
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceee
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQD 277 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~ 277 (400)
++..++.|+.+ ..+..||..+.+-...-.............-++..++.|+. ++ .+..||..+.+-.
T Consensus 279 ~~~~l~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~---dg----~i~vwd~~~~~~~- 345 (464)
T 3v7d_B 279 HGNIVVSGSYD-----NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM---DT----TIRIWDLENGELM- 345 (464)
T ss_dssp ETTEEEEEETT-----SCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEET---TS----CEEEEETTTTEEE-
T ss_pred CCCEEEEEeCC-----CeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeC---CC----cEEEEECCCCcEE-
Confidence 45556666655 35888998876543321111111111122235667777776 44 6899998766422
Q ss_pred ccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCC
Q psy2979 278 LAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGY 357 (400)
Q Consensus 278 ~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~ 357 (400)
..+............++..++.|+. ...+..||+.+..-...... .......+...++++.+.|+.
T Consensus 346 -~~~~~h~~~v~~~~~~~~~l~s~s~------dg~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~d------ 411 (464)
T 3v7d_B 346 -YTLQGHTALVGLLRLSDKFLVSAAA------DGSIRGWDANDYSRKFSYHH-TNLSAITTFYVSDNILVSGSE------ 411 (464)
T ss_dssp -EEECCCSSCEEEEEECSSEEEEEET------TSEEEEEETTTCCEEEEEEC-TTCCCEEEEEECSSEEEEEET------
T ss_pred -EEEeCCCCcEEEEEEcCCEEEEEeC------CCcEEEEECCCCceeeeecC-CCCccEEEEEeCCCEEEEecC------
Confidence 2222222223344556777777776 46899999987653222111 111222233447777777653
Q ss_pred CCeEEEEECCCCcEEE
Q psy2979 358 HDSIECYDVDNDSWEI 373 (400)
Q Consensus 358 ~~~v~~yd~~~~~W~~ 373 (400)
..|.+||..+++-..
T Consensus 412 -g~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 412 -NQFNIYNLRSGKLVH 426 (464)
T ss_dssp -TEEEEEETTTCCEEE
T ss_pred -CeEEEEECCCCcEEe
Confidence 478999999886544
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.015 Score=54.01 Aligned_cols=223 Identities=14% Similarity=0.053 Sum_probs=115.8
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCCCCcc
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDF 189 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r 189 (400)
+..++.|+.+ ..+.+||..+++-...-... ...-.++. .++..++.......+..+|..+++.... +....
T Consensus 143 ~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~h-~~~v~~l~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~--~~~h~ 213 (435)
T 1p22_A 143 DQKIVSGLRD-----NTIKIWDKNTLECKRILTGH-TGSVLCLQ-YDERVIITGSSDSTVRVWDVNTGEMLNT--LIHHC 213 (435)
T ss_dssp SSEEEEEESS-----SCEEEEESSSCCEEEEECCC-SSCEEEEE-CCSSEEEEEETTSCEEEEESSSCCEEEE--ECCCC
T ss_pred CCEEEEEeCC-----CeEEEEeCCCCeEEEEEcCC-CCcEEEEE-ECCCEEEEEcCCCeEEEEECCCCcEEEE--EcCCC
Confidence 3445556544 46888888776643221111 11112222 2555133335556788899887754321 11111
Q ss_pred eeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEc-cCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEE
Q psy2979 190 DVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYI-EPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRY 268 (400)
Q Consensus 190 ~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~y 268 (400)
........++..++.|+.+ ..+..||..+.+-... ..+........+...++..++.|+. ++ .+..|
T Consensus 214 ~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~---dg----~i~vw 281 (435)
T 1p22_A 214 EAVLHLRFNNGMMVTCSKD-----RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASG---DR----TIKVW 281 (435)
T ss_dssp SCEEEEECCTTEEEEEETT-----SCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEET---TS----EEEEE
T ss_pred CcEEEEEEcCCEEEEeeCC-----CcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeC---CC----eEEEE
Confidence 1122223345566667755 3588888877642211 1111111122233346667777776 43 78999
Q ss_pred eCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEE
Q psy2979 269 NPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVL 348 (400)
Q Consensus 269 d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~ 348 (400)
|..+.+-... +............++..++.|+. ...+..||..+++-... +........+...+++.++.
T Consensus 282 d~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~g~~------dg~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~l~s 351 (435)
T 1p22_A 282 NTSTCEFVRT--LNGHKRGIACLQYRDRLVVSGSS------DNTIRLWDIECGACLRV--LEGHEELVRCIRFDNKRIVS 351 (435)
T ss_dssp ETTTCCEEEE--EECCSSCEEEEEEETTEEEEEET------TSCEEEEETTTCCEEEE--ECCCSSCEEEEECCSSEEEE
T ss_pred ECCcCcEEEE--EcCCCCcEEEEEeCCCEEEEEeC------CCeEEEEECCCCCEEEE--EeCCcCcEEEEEecCCEEEE
Confidence 9877643221 11111122334446777777775 45799999987653321 11111222334447888888
Q ss_pred cCccCCCCCCCeEEEEECCCC
Q psy2979 349 GGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 349 GG~~~~~~~~~~v~~yd~~~~ 369 (400)
|+. + ..|.+||..+.
T Consensus 352 g~~-d-----g~i~vwd~~~~ 366 (435)
T 1p22_A 352 GAY-D-----GKIKVWDLVAA 366 (435)
T ss_dssp EET-T-----SCEEEEEHHHH
T ss_pred EeC-C-----CcEEEEECCCC
Confidence 876 3 36788887543
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.076 Score=47.31 Aligned_cols=208 Identities=11% Similarity=0.185 Sum_probs=111.5
Q ss_pred CceEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCC-CCc-ceeeeEEEECCEEEEEcccCCCCC
Q psy2979 135 KVWKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSL-KFD-FDVSGIAMLDGFVYAVGGWDGSCR 212 (400)
Q Consensus 135 ~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~-~~~-r~~~~~~~~~~~iyv~GG~~~~~~ 212 (400)
..|..+. +|......++...+...+|++.....++.-.-...+|+.+... +.+ ....++...++.+|++|. .
T Consensus 25 ~~W~~~~-~~~~~~~~~v~~~~~~~~~~~G~~g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~-~---- 98 (327)
T 2xbg_A 25 NPWEAIQ-LPTTATILDMSFIDRHHGWLVGVNATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGE-P---- 98 (327)
T ss_dssp CCEEEEE-CSCSSCEEEEEESSSSCEEEEETTTEEEEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEE-T----
T ss_pred CCceEee-cCCCCcEEEEEECCCCcEEEEcCCCeEEEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEEC-C----
Confidence 4688765 2333333444444433277764444555554445689987642 222 233344445678888753 1
Q ss_pred CCeEEEEeCCCCceEEccC---CCCcccccEEE-EeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceee
Q psy2979 213 LDSVERYDPTKNEWSYIEP---MKLAVTSPAVV-AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGA 288 (400)
Q Consensus 213 ~~~v~~yd~~~~~W~~~~~---l~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~ 288 (400)
..+++-+-.-.+|+.+.. +|.. ...++ .-++.+|+.|.. ..+++-.-...+|+.+.... +...+
T Consensus 99 -g~i~~S~DgG~tW~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~--------g~v~~S~DgG~tW~~~~~~~-~~~~~ 166 (327)
T 2xbg_A 99 -PIMLHTTDGGQSWSQIPLDPKLPGS--PRLIKALGNGSAEMITNV--------GAIYRTKDSGKNWQALVQEA-IGVMR 166 (327)
T ss_dssp -TEEEEESSTTSSCEECCCCTTCSSC--EEEEEEEETTEEEEEETT--------CCEEEESSTTSSEEEEECSC-CCCEE
T ss_pred -CeEEEECCCCCCceECccccCCCCC--eEEEEEECCCCEEEEeCC--------ccEEEEcCCCCCCEEeecCC-CcceE
Confidence 235543334578999864 2322 12333 346888887754 14666555567899986432 22334
Q ss_pred eEEEE-CCeEEEEcCcCCCCCCCCeEEEEE-CCCCeEEEccCCcCccCcceEEEE-CCEEEEEcCccCCCCCCCeEEEEE
Q psy2979 289 AICAL-DSCIYVLGGWHASTENTNRVECYH-IAENTWEYKSPMKEKRYRPGIAVI-DGKIYVLGGEEGWDGYHDSIECYD 365 (400)
Q Consensus 289 ~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd-~~~~~W~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd 365 (400)
.++.. ++.+|++|. ...+++-+ .....|+.+.. +.....+.++.. ++.+|+++.. ..++..+
T Consensus 167 ~~~~~~~~~~~~~g~-------~G~~~~S~d~gG~tW~~~~~-~~~~~~~~~~~~~~g~~~~~~~~-------G~~~~s~ 231 (327)
T 2xbg_A 167 NLNRSPSGEYVAVSS-------RGSFYSTWEPGQTAWEPHNR-TTSRRLHNMGFTPDGRLWMIVNG-------GKIAFSD 231 (327)
T ss_dssp EEEECTTSCEEEEET-------TSSEEEEECTTCSSCEEEEC-CSSSCEEEEEECTTSCEEEEETT-------TEEEEEE
T ss_pred EEEEcCCCcEEEEEC-------CCcEEEEeCCCCCceeECCC-CCCCccceeEECCCCCEEEEeCC-------ceEEEec
Confidence 44443 567776663 22345443 33678998853 223333333332 6788877643 1355553
Q ss_pred CC-CCcEEEec
Q psy2979 366 VD-NDSWEIMS 375 (400)
Q Consensus 366 ~~-~~~W~~~~ 375 (400)
.. ..+|+.+.
T Consensus 232 ~D~G~tW~~~~ 242 (327)
T 2xbg_A 232 PDNSENWGELL 242 (327)
T ss_dssp TTEEEEECCCB
T ss_pred CCCCCeeEecc
Confidence 33 56798874
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.059 Score=47.77 Aligned_cols=235 Identities=11% Similarity=0.058 Sum_probs=120.0
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeec-----CEEEEEECCCCCeEEc-
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIV-----DIVYVAASMHKILHSL- 182 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~-----~~~~~yd~~~~~w~~~- 182 (400)
+.+++.+..+ ..+..||+.+++...+...+ ...-.+++.. ++. +|+.... ..++.+|+.++.....
T Consensus 56 g~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~-~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~~~~ 128 (333)
T 2dg1_A 56 GQLFLLDVFE-----GNIFKINPETKEIKRPFVSH-KANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQDII 128 (333)
T ss_dssp SCEEEEETTT-----CEEEEECTTTCCEEEEEECS-SSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCEEEE
T ss_pred CCEEEEECCC-----CEEEEEeCCCCcEEEEeeCC-CCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEEEEEE
Confidence 3455554432 46888999888876543211 1223344444 556 8887443 4899999988876532
Q ss_pred cCCCCcceeeeEEEE-CCEEEEEcccC-CCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE-eCC-EEEEEcCccccC
Q psy2979 183 GSLKFDFDVSGIAML-DGFVYAVGGWD-GSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA-HEG-MLYVTGGAILED 258 (400)
Q Consensus 183 ~~~~~~r~~~~~~~~-~~~iyv~GG~~-~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~~~-~iyv~GG~~~~~ 258 (400)
........-..++.. ++.+|+..... .......++++|+.+++...+..- .....+.+. -++ .+|+....
T Consensus 129 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~i~~~~dg~~l~v~~~~---- 202 (333)
T 2dg1_A 129 EDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--ISVANGIALSTDEKVLWVTETT---- 202 (333)
T ss_dssp CSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--ESSEEEEEECTTSSEEEEEEGG----
T ss_pred ccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC--CCcccceEECCCCCEEEEEeCC----
Confidence 222111111222222 67888754321 111235689999988776554210 001122222 244 58887543
Q ss_pred CCCcceEEEEeCCCC--ceeecc-----CCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCc
Q psy2979 259 GDGIEQVQRYNPKVN--QWQDLA-----PMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMK 330 (400)
Q Consensus 259 ~~~~~~v~~yd~~~~--~W~~~~-----~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~ 330 (400)
...+++||+.++ ...... .++....-.+++.- ++.+|+.... ...+.+||+....-..+. .+
T Consensus 203 ---~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~------~~~v~~~d~~g~~~~~~~-~~ 272 (333)
T 2dg1_A 203 ---ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG------QGRVLVFNKRGYPIGQIL-IP 272 (333)
T ss_dssp ---GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET------TTEEEEECTTSCEEEEEE-CT
T ss_pred ---CCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcC------CCEEEEECCCCCEEEEEE-cC
Confidence 247899998542 232211 11111111222222 6788887632 357999999655444432 22
Q ss_pred Cc---c-CcceEEEE--C-CEEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 331 EK---R-YRPGIAVI--D-GKIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 331 ~~---~-~~~~~~~~--~-~~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
.. . .....+.+ + +.||+.... +.......++++++..
T Consensus 273 ~~~~g~~~~~~~~~~~~dg~~L~v~~~~-g~~~~~~~l~~~~~~~ 316 (333)
T 2dg1_A 273 GRDEGHMLRSTHPQFIPGTNQLIICSND-IEMGGGSMLYTVNGFA 316 (333)
T ss_dssp TGGGTCSCBCCEEEECTTSCEEEEEEEC-GGGTCCEEEEEEECSS
T ss_pred CCccccccCcceEEECCCCCEEEEEeCc-cCCCCCceEEEEeccc
Confidence 11 0 02233344 3 478876543 2222234678887653
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.028 Score=50.20 Aligned_cols=241 Identities=13% Similarity=0.177 Sum_probs=118.0
Q ss_pred ceEEEEEcCCCceEEccCCc-ccceeeeEEEE-CCeEEEEEe-ecCEEEEEECC-CCCeEEccCCCC------cc----e
Q psy2979 125 RSVEGFCVKTKVWKTLSCLP-FAISKHGLVVS-GRNTIYCLD-IVDIVYVAASM-HKILHSLGSLKF------DF----D 190 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~-~~~~~~~~~~~-~~~~iyv~~-~~~~~~~yd~~-~~~w~~~~~~~~------~r----~ 190 (400)
..+..||...+++..+..+. .......++.. ++..+|+.. ....+..||.. .++...+..... +| .
T Consensus 63 ~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~ 142 (347)
T 3hfq_A 63 GGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSH 142 (347)
T ss_dssp EEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCC
T ss_pred ceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCC
Confidence 56888888777766554322 12222334444 344266664 44667778874 334333322111 11 1
Q ss_pred eeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCC-CCceEEccC--CCCc-ccccEEEEeCCE-EEEEcCccccCCCCcce
Q psy2979 191 VSGIAML-DGFVYAVGGWDGSCRLDSVERYDPT-KNEWSYIEP--MKLA-VTSPAVVAHEGM-LYVTGGAILEDGDGIEQ 264 (400)
Q Consensus 191 ~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~-~~~W~~~~~--l~~~-~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~ 264 (400)
-+.++.. ++++|+.+..+ ..+..||.. +++...... .+.. ...+.+..-+++ +|+.+.. + ..
T Consensus 143 ~~~~~~spdg~l~v~~~~~-----~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~---~----~~ 210 (347)
T 3hfq_A 143 IHYTDLTPDNRLAVIDLGS-----DKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGEL---S----SQ 210 (347)
T ss_dssp EEEEEECTTSCEEEEETTT-----TEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT---T----TE
T ss_pred ceEEEECCCCcEEEEeCCC-----CEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCC---C----CE
Confidence 1222222 56677764322 468888887 566554432 1111 111122223554 8887554 2 24
Q ss_pred EEEE--eCCCCceeecc---CCCCC----ceeeeEEEE-CC-eEEEEcCcCCCCCCCCeEEEEECC-CCeEEEccCCcCc
Q psy2979 265 VQRY--NPKVNQWQDLA---PMLIP----RSGAAICAL-DS-CIYVLGGWHASTENTNRVECYHIA-ENTWEYKSPMKEK 332 (400)
Q Consensus 265 v~~y--d~~~~~W~~~~---~~~~~----r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~-~~~W~~~~~~~~~ 332 (400)
+..| +..+.+++.+. ..+.. .....++.. ++ .||+.+.. .+.+..||.. ++.++.+...+..
T Consensus 211 v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~------~~~v~v~~~~~~g~~~~~~~~~~~ 284 (347)
T 3hfq_A 211 IASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG------YNTLAVFAVTADGHLTLIQQISTE 284 (347)
T ss_dssp EEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEET------TTEEEEEEECGGGCEEEEEEEECS
T ss_pred EEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCC------CCEEEEEEECCCCcEEEeEEEecC
Confidence 4555 44456655433 22321 112222222 55 47776543 4578888875 3355555544442
Q ss_pred cCcceEEEE--CC-EEEEEcCccCCCCCCCeEEEE--ECCCCcEEEecC---CCCCCCceeeEEEccc
Q psy2979 333 RYRPGIAVI--DG-KIYVLGGEEGWDGYHDSIECY--DVDNDSWEIMSH---LPSARSWLGCVPLQIH 392 (400)
Q Consensus 333 ~~~~~~~~~--~~-~lyv~GG~~~~~~~~~~v~~y--d~~~~~W~~~~~---~~~~r~~~~~~~~~~~ 392 (400)
......+.+ ++ .||+.+.. + +.+.+| |+++++.+.+.. +|.| .+.+.++..
T Consensus 285 ~~~~~~~~~spdg~~l~v~~~~-~-----~~v~v~~~d~~tg~l~~~~~~~~~p~p---~~~~~~~~~ 343 (347)
T 3hfq_A 285 GDFPRDFDLDPTEAFVVVVNQN-T-----DNATLYARDLTSGKLSLLQKDVTVPEG---VCVRFLEHH 343 (347)
T ss_dssp SSCCCEEEECTTSSEEEEEETT-T-----TEEEEEEECTTTCCEEEEEEEEECTTE---EEEEECC--
T ss_pred CCCcCeEEECCCCCEEEEEEcC-C-----CcEEEEEEeCCCCeEEecccceecCCC---cEEEehhhc
Confidence 222333444 45 47666543 1 345555 888888887653 4433 555555543
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.079 Score=47.28 Aligned_cols=225 Identities=10% Similarity=0.037 Sum_probs=108.7
Q ss_pred EEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCC--eEEccCCCC-
Q psy2979 112 IIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKI--LHSLGSLKF- 187 (400)
Q Consensus 112 i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~--w~~~~~~~~- 187 (400)
.++.|+.+ ..+.++|..+++-...-.... ..-.+++.. ++..+........+..||..+.. ......+..
T Consensus 69 ~l~s~s~D-----g~v~iWd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h 142 (340)
T 1got_B 69 LLLSASQD-----GKLIIWDSYTTNKVHAIPLRS-SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGH 142 (340)
T ss_dssp EEEEEETT-----TEEEEEETTTCCEEEEEECSS-SCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECC
T ss_pred EEEEEeCC-----CcEEEEECCCCCcceEeecCC-ccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCC
Confidence 44455544 467888877665332111111 111222332 33312222445667788876543 111111111
Q ss_pred cceeeeEE-EECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE-eCCEEEEEcCccccCCCCcceE
Q psy2979 188 DFDVSGIA-MLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQV 265 (400)
Q Consensus 188 ~r~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v 265 (400)
...-.++. .-++. ++.|+.+ ..+..||+.+++-...-.-.... -.+++. -++.+++.|+. ++ .+
T Consensus 143 ~~~v~~~~~~~~~~-l~s~s~d-----~~i~~wd~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~sg~~---d~----~v 208 (340)
T 1got_B 143 TGYLSCCRFLDDNQ-IVTSSGD-----TTCALWDIETGQQTTTFTGHTGD-VMSLSLAPDTRLFVSGAC---DA----SA 208 (340)
T ss_dssp SSCEEEEEEEETTE-EEEEETT-----SCEEEEETTTTEEEEEECCCSSC-EEEEEECTTSSEEEEEET---TS----CE
T ss_pred CccEEEEEECCCCc-EEEEECC-----CcEEEEECCCCcEEEEEcCCCCc-eEEEEECCCCCEEEEEeC---CC----cE
Confidence 11111122 22555 4445544 45888999887643321111111 112222 36778888887 54 68
Q ss_pred EEEeCCCCceeeccCCCCCce-eeeEEE-ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--
Q psy2979 266 QRYNPKVNQWQDLAPMLIPRS-GAAICA-LDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI-- 341 (400)
Q Consensus 266 ~~yd~~~~~W~~~~~~~~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-- 341 (400)
..||..+..-... +..... -.+++. -++..++.|+. ...+..||..+++-...-..+........+.+
T Consensus 209 ~~wd~~~~~~~~~--~~~h~~~v~~v~~~p~~~~l~s~s~------d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 280 (340)
T 1got_B 209 KLWDVREGMCRQT--FTGHESDINAICFFPNGNAFATGSD------DATCRLFDLRADQELMTYSHDNIICGITSVSFSK 280 (340)
T ss_dssp EEEETTTCSEEEE--ECCCSSCEEEEEECTTSSEEEEEET------TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT
T ss_pred EEEECCCCeeEEE--EcCCcCCEEEEEEcCCCCEEEEEcC------CCcEEEEECCCCcEEEEEccCCcccceEEEEECC
Confidence 8899876543221 111111 112222 26777888876 45788999887764322121111112223333
Q ss_pred CCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 342 DGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 342 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
++++++.|+. + ..|.+||..+.+
T Consensus 281 ~g~~l~~g~~-d-----~~i~vwd~~~~~ 303 (340)
T 1got_B 281 SGRLLLAGYD-D-----FNCNVWDALKAD 303 (340)
T ss_dssp TSSEEEEEET-T-----SEEEEEETTTCC
T ss_pred CCCEEEEECC-C-----CeEEEEEcccCc
Confidence 6777787776 2 468899987653
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.065 Score=47.49 Aligned_cols=216 Identities=16% Similarity=0.124 Sum_probs=107.0
Q ss_pred EEEEeccCCCcccceEEEEEcCCCceEE-ccCCcccceeeeEEEE-CCeEEEEE-eecCEEEEEECCCCCeEEccCCCCc
Q psy2979 112 IIAVGGEDDKVVLRSVEGFCVKTKVWKT-LSCLPFAISKHGLVVS-GRNTIYCL-DIVDIVYVAASMHKILHSLGSLKFD 188 (400)
Q Consensus 112 i~~~gg~~~~~~~~~~~~yd~~~~~w~~-~~~~~~~~~~~~~~~~-~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~ 188 (400)
+++.|+.+ ..+..+|..+++-.. +..-+. ...+++.. ++. .++. .....+..||..+++-...-.. ..
T Consensus 94 ~l~s~s~D-----~~i~lWd~~~~~~~~~~~~~~~--~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~~~~~~~-~~ 164 (321)
T 3ow8_A 94 IAASSSLD-----AHIRLWDLENGKQIKSIDAGPV--DAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKKEYSLDT-RG 164 (321)
T ss_dssp EEEEEETT-----SEEEEEETTTTEEEEEEECCTT--CCCCEEECTTSS-EEEEECTTSEEEEEETTTCSEEEEEEC-SS
T ss_pred EEEEEeCC-----CcEEEEECCCCCEEEEEeCCCc--cEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCceeEEecC-CC
Confidence 44455544 467888887765332 211111 11123333 333 3333 4446677888776643211111 11
Q ss_pred ceeeeEEE-ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEc-cCCCCcccccEEE-EeCCEEEEEcCccccCCCCcceE
Q psy2979 189 FDVSGIAM-LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYI-EPMKLAVTSPAVV-AHEGMLYVTGGAILEDGDGIEQV 265 (400)
Q Consensus 189 r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~~l~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~v 265 (400)
..-.+++. -+++.++.|+.+ ..+..||..+++-... ..-..+ -.+++ .-++.+++.|+. ++ .+
T Consensus 165 ~~v~~~~~spdg~~lasg~~d-----g~i~iwd~~~~~~~~~~~~h~~~--v~~l~~spd~~~l~s~s~---dg----~i 230 (321)
T 3ow8_A 165 KFILSIAYSPDGKYLASGAID-----GIINIFDIATGKLLHTLEGHAMP--IRSLTFSPDSQLLVTASD---DG----YI 230 (321)
T ss_dssp SCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEEECCCSSC--CCEEEECTTSCEEEEECT---TS----CE
T ss_pred ceEEEEEECCCCCEEEEEcCC-----CeEEEEECCCCcEEEEEcccCCc--eeEEEEcCCCCEEEEEcC---CC----eE
Confidence 11112222 256677777765 3588899988754322 111111 11222 236778888887 54 68
Q ss_pred EEEeCCCCceeeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--
Q psy2979 266 QRYNPKVNQWQDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI-- 341 (400)
Q Consensus 266 ~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-- 341 (400)
..||..+...... +.........+.. ++..++.|+. ...+..||..+.+-... +.........+.+
T Consensus 231 ~iwd~~~~~~~~~--~~~h~~~v~~~~~sp~~~~l~s~s~------D~~v~iwd~~~~~~~~~--~~~h~~~v~~v~~s~ 300 (321)
T 3ow8_A 231 KIYDVQHANLAGT--LSGHASWVLNVAFCPDDTHFVSSSS------DKSVKVWDVGTRTCVHT--FFDHQDQVWGVKYNG 300 (321)
T ss_dssp EEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEET------TSCEEEEETTTTEEEEE--ECCCSSCEEEEEECT
T ss_pred EEEECCCcceeEE--EcCCCCceEEEEECCCCCEEEEEeC------CCcEEEEeCCCCEEEEE--EcCCCCcEEEEEECC
Confidence 8999876554322 1111111112222 6677777776 45788999887764332 1111111122333
Q ss_pred CCEEEEEcCccCCCCCCCeEEEEEC
Q psy2979 342 DGKIYVLGGEEGWDGYHDSIECYDV 366 (400)
Q Consensus 342 ~~~lyv~GG~~~~~~~~~~v~~yd~ 366 (400)
+++.++.||. + ..|.+||.
T Consensus 301 ~g~~l~s~~~-d-----~~i~vwd~ 319 (321)
T 3ow8_A 301 NGSKIVSVGD-D-----QEIHIYDC 319 (321)
T ss_dssp TSSEEEEEET-T-----CCEEEEEC
T ss_pred CCCEEEEEeC-C-----CeEEEEeC
Confidence 5666677766 2 35677763
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.029 Score=48.73 Aligned_cols=202 Identities=11% Similarity=-0.042 Sum_probs=104.5
Q ss_pred eecCEEEEEECCCCC--eEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCC--ceEEccCCCCccccc
Q psy2979 164 DIVDIVYVAASMHKI--LHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKN--EWSYIEPMKLAVTSP 239 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~--w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~l~~~~~~~ 239 (400)
.....+..+|+.+++ |+.-..-. .........-++++++.+. ..+..||+ ++ .|+.-.+ .....+
T Consensus 12 ~~~~~v~~~d~~tG~~~w~~~~~~~-~~~~~~~~~pdG~ilvs~~-------~~V~~~d~-~G~~~W~~~~~--~~~~~~ 80 (276)
T 3no2_A 12 SGWNKIAIINKDTKEIVWEYPLEKG-WECNSVAATKAGEILFSYS-------KGAKMITR-DGRELWNIAAP--AGCEMQ 80 (276)
T ss_dssp TTCSEEEEEETTTTEEEEEEECCTT-CCCCEEEECTTSCEEEECB-------SEEEEECT-TSCEEEEEECC--TTCEEE
T ss_pred CCCCEEEEEECCCCeEEEEeCCCcc-CCCcCeEECCCCCEEEeCC-------CCEEEECC-CCCEEEEEcCC--CCcccc
Confidence 334567777876665 54332210 1122222333778888432 45899999 45 4765432 111122
Q ss_pred EEE-EeCCEEEEEcCccccCCCCcceEEEEeCCCCc-eeecc--CCCCC--ceeeeEEEECCeEEEEcCcCCCCCCCCeE
Q psy2979 240 AVV-AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ-WQDLA--PMLIP--RSGAAICALDSCIYVLGGWHASTENTNRV 313 (400)
Q Consensus 240 ~~~-~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~-W~~~~--~~~~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~v 313 (400)
++. ..++++++..+. + ...++.+|+.... |+.-. ..+.+ .........++.+++.... ...+
T Consensus 81 ~~~~~~dG~~lv~~~~---~---~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~------~~~v 148 (276)
T 3no2_A 81 TARILPDGNALVAWCG---H---PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA------TSEV 148 (276)
T ss_dssp EEEECTTSCEEEEEES---T---TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT------TTEE
T ss_pred ccEECCCCCEEEEecC---C---CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC------CCEE
Confidence 333 346777766432 1 1368888885553 44321 11111 1112233346777766543 4689
Q ss_pred EEEECCCC-eEEEccCCcCccCcceEEEE-CCEEEEEcCccCCCCCCCeEEEEECCCCc--EEEec-CCCCCCC--ceee
Q psy2979 314 ECYHIAEN-TWEYKSPMKEKRYRPGIAVI-DGKIYVLGGEEGWDGYHDSIECYDVDNDS--WEIMS-HLPSARS--WLGC 386 (400)
Q Consensus 314 ~~yd~~~~-~W~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~-~~~~~r~--~~~~ 386 (400)
.+||++.+ .|+.-.+ ...+++... +|.+++.+.. ...|..+|+.+++ |+.-. .++..+. -.++
T Consensus 149 ~~~d~~G~~~w~~~~~----~~~~~~~~~~~g~~~v~~~~------~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~ 218 (276)
T 3no2_A 149 REIAPNGQLLNSVKLS----GTPFSSAFLDNGDCLVACGD------AHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQL 218 (276)
T ss_dssp EEECTTSCEEEEEECS----SCCCEEEECTTSCEEEECBT------TSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEE
T ss_pred EEECCCCCEEEEEECC----CCccceeEcCCCCEEEEeCC------CCeEEEEeCcCCcEEEEecCCCCCCccccccccc
Confidence 99999733 3765432 112234444 7888887764 2469999999664 76642 2232222 2455
Q ss_pred EEEccccccccc
Q psy2979 387 VPLQIHKSQFVD 398 (400)
Q Consensus 387 ~~~~~~~~~~~~ 398 (400)
+++.+..+++.+
T Consensus 219 ~~~~~G~i~v~~ 230 (276)
T 3no2_A 219 FPLQNGGLYICN 230 (276)
T ss_dssp EECTTSCEEEEE
T ss_pred eEcCCCCEEEEe
Confidence 555555554443
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.084 Score=46.76 Aligned_cols=212 Identities=13% Similarity=0.096 Sum_probs=118.8
Q ss_pred eEEEEEcCCCceEEccCCcccceeeeEEEE--CCeEEEEEe-ecCEEEEEECCC----CCeEEcc--CCCCcceeeeEEE
Q psy2979 126 SVEGFCVKTKVWKTLSCLPFAISKHGLVVS--GRNTIYCLD-IVDIVYVAASMH----KILHSLG--SLKFDFDVSGIAM 196 (400)
Q Consensus 126 ~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~--~~~~iyv~~-~~~~~~~yd~~~----~~w~~~~--~~~~~r~~~~~~~ 196 (400)
.+..+|+...+...+. +.....++++.. ++. ||+.. ....++.+++.. .....+- .+..| .++++
T Consensus 11 ~I~~i~~~~~~~~~~~--~~~~~p~g~~~d~~~~~-ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p---~glav 84 (316)
T 1ijq_A 11 EVRKMTLDRSEYTSLI--PNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP---DGLAV 84 (316)
T ss_dssp SEEEEETTSCCCEEEE--CSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSCSCC---CEEEE
T ss_pred eEEEEECCCcceEehh--cCCCceEEEEEEeCCCE-EEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCc---CEEEE
Confidence 5677788777665442 222333556554 456 99883 457899999876 2222221 12222 23443
Q ss_pred --ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEcc--CCCCcccccEEEE--eCCEEEEEcCccccCCCCcceEEEEeC
Q psy2979 197 --LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIE--PMKLAVTSPAVVA--HEGMLYVTGGAILEDGDGIEQVQRYNP 270 (400)
Q Consensus 197 --~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~--~l~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~ 270 (400)
.++.||+.-.. ...++++|+....-..+. .+..++ ++++ .++.||+.... . ...++++++
T Consensus 85 d~~~~~ly~~d~~-----~~~I~~~~~~g~~~~~~~~~~~~~P~---~iavdp~~g~ly~~d~~---~---~~~I~~~~~ 150 (316)
T 1ijq_A 85 DWIHSNIYWTDSV-----LGTVSVADTKGVKRKTLFRENGSKPR---AIVVDPVHGFMYWTDWG---T---PAKIKKGGL 150 (316)
T ss_dssp ETTTTEEEEEETT-----TTEEEEEETTSSSEEEEEECTTCCEE---EEEEETTTTEEEEEECS---S---SCEEEEEET
T ss_pred eecCCeEEEEECC-----CCEEEEEeCCCCceEEEEECCCCCcc---eEEeCCCCCEEEEEccC---C---CCeEEEEcC
Confidence 47899997432 357889998765433332 232222 3344 37899998532 1 247999998
Q ss_pred CCCceeeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCc-CccCcceEEEECCEEEE
Q psy2979 271 KVNQWQDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMK-EKRYRPGIAVIDGKIYV 347 (400)
Q Consensus 271 ~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~~~~~~~~~~~~~lyv 347 (400)
....-+.+..... ..-.+++.- ++.||+.... ...++++|+....-..+...+ ....-.++++.++.||+
T Consensus 151 dG~~~~~~~~~~~-~~P~gla~d~~~~~lY~~D~~------~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~~ly~ 223 (316)
T 1ijq_A 151 NGVDIYSLVTENI-QWPNGITLDLLSGRLYWVDSK------LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFW 223 (316)
T ss_dssp TSCCEEEEECSSC-SCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEE
T ss_pred CCCCeEEEEECCC-CCceEEEEeccCCEEEEEECC------CCeEEEEecCCCceEEEeecCCccCCcEEEEEECCEEEE
Confidence 7654443321111 112334443 6899998754 568999998754333332211 11223466667899999
Q ss_pred EcCccCCCCCCCeEEEEECCCCc
Q psy2979 348 LGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 348 ~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
.-.. ...|.++|+.+++
T Consensus 224 ~d~~------~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 224 TDII------NEAIFSANRLTGS 240 (316)
T ss_dssp EETT------TTEEEEEETTTCC
T ss_pred EECC------CCeEEEEeCCCCc
Confidence 7633 3578888876543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.036 Score=55.89 Aligned_cols=226 Identities=11% Similarity=-0.027 Sum_probs=111.0
Q ss_pred EEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCCcce
Q psy2979 112 IIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFD 190 (400)
Q Consensus 112 i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~ 190 (400)
.+++|+.+ ..+.+||..+++....-... ...-.+++.. ++..|.+......+..||..+++....-.. ....
T Consensus 27 ~la~~~~~-----g~v~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~ 99 (814)
T 3mkq_A 27 WVLTTLYS-----GRVEIWNYETQVEVRSIQVT-ETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA-HPDY 99 (814)
T ss_dssp EEEEEETT-----SEEEEEETTTTEEEEEEECC-SSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEEC-CSSC
T ss_pred EEEEEeCC-----CEEEEEECCCCceEEEEecC-CCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEec-CCCC
Confidence 44555533 46888998776543221111 1111233333 333133335556788899887765332111 1111
Q ss_pred eeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCccc-ccEEEEe--CCEEEEEcCccccCCCCcceEE
Q psy2979 191 VSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVT-SPAVVAH--EGMLYVTGGAILEDGDGIEQVQ 266 (400)
Q Consensus 191 ~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~-~~~~~~~--~~~iyv~GG~~~~~~~~~~~v~ 266 (400)
-.+++.. ++..++.|+.+ ..+..||..++ |.....+..... -.+++.. ++..+++|+. ++ .+.
T Consensus 100 v~~~~~s~~~~~l~~~~~d-----g~i~vw~~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---dg----~v~ 166 (814)
T 3mkq_A 100 IRSIAVHPTKPYVLSGSDD-----LTVKLWNWENN-WALEQTFEGHEHFVMCVAFNPKDPSTFASGCL---DR----TVK 166 (814)
T ss_dssp EEEEEECSSSSEEEEEETT-----SEEEEEEGGGT-SEEEEEEECCSSCEEEEEEETTEEEEEEEEET---TS----EEE
T ss_pred EEEEEEeCCCCEEEEEcCC-----CEEEEEECCCC-ceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC---CC----eEE
Confidence 1112222 45555566644 45888888765 222111111111 1122222 5667777776 43 789
Q ss_pred EEeCCCCceeeccCCCCCceeeeEEEE---CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--
Q psy2979 267 RYNPKVNQWQDLAPMLIPRSGAAICAL---DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI-- 341 (400)
Q Consensus 267 ~yd~~~~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-- 341 (400)
.||..+..-...-..........+... ++..++.|+. ...+..||..+++-... +.........+..
T Consensus 167 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~~ 238 (814)
T 3mkq_A 167 VWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD------DLTIKIWDYQTKSCVAT--LEGHMSNVSFAVFHP 238 (814)
T ss_dssp EEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT------TSEEEEEETTTTEEEEE--EECCSSCEEEEEECS
T ss_pred EEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC------CCEEEEEECCCCcEEEE--EcCCCCCEEEEEEcC
Confidence 999865542221111111111222222 6677777776 46899999887763322 1111111222233
Q ss_pred CCEEEEEcCccCCCCCCCeEEEEECCCCcE
Q psy2979 342 DGKIYVLGGEEGWDGYHDSIECYDVDNDSW 371 (400)
Q Consensus 342 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W 371 (400)
++.+++.|+. + ..|.+||+.+.+-
T Consensus 239 ~~~~l~~~~~-d-----g~v~vwd~~~~~~ 262 (814)
T 3mkq_A 239 TLPIIISGSE-D-----GTLKIWNSSTYKV 262 (814)
T ss_dssp SSSEEEEEET-T-----SCEEEEETTTCSE
T ss_pred CCCEEEEEeC-C-----CeEEEEECCCCcE
Confidence 5667777765 2 3588899887553
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.026 Score=49.88 Aligned_cols=140 Identities=12% Similarity=0.027 Sum_probs=70.6
Q ss_pred ceEEEEEcCCCceEEccCCcccc-eeeeEEEE-CCeEEEEE-eecCEEEEEECCCCCeEEccCCCCc----ceeeeEEEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAI-SKHGLVVS-GRNTIYCL-DIVDIVYVAASMHKILHSLGSLKFD----FDVSGIAML 197 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~-~~~~~~~~-~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~----r~~~~~~~~ 197 (400)
..+..+|+.+++....-.++... ..+.++.. ++..+|+. .....+..+|+.+++-...-+.+.+ ..-..++..
T Consensus 11 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s 90 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALS 90 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEEC
T ss_pred CeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEEC
Confidence 47888998887654322222210 12334443 44336666 3346899999988765432221110 011122222
Q ss_pred -CC-EEEEEcccC---CCC---CCCeEEEEeCCCCceEEccCCCCcccccEEEE-eCC-EEEEEcCccccCCCCcceEEE
Q psy2979 198 -DG-FVYAVGGWD---GSC---RLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA-HEG-MLYVTGGAILEDGDGIEQVQR 267 (400)
Q Consensus 198 -~~-~iyv~GG~~---~~~---~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~v~~ 267 (400)
++ .+|+..... ... ....+..||+.+++....-+.+.. -..++. -++ .+|+.++ .+..
T Consensus 91 ~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~----------~i~~ 158 (337)
T 1pby_B 91 PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ--ITMLAWARDGSKLYGLGR----------DLHV 158 (337)
T ss_dssp TTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS--CCCEEECTTSSCEEEESS----------SEEE
T ss_pred CCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCC--cceeEECCCCCEEEEeCC----------eEEE
Confidence 34 677764210 011 236799999988765433222211 122222 244 4777633 4888
Q ss_pred EeCCCCcee
Q psy2979 268 YNPKVNQWQ 276 (400)
Q Consensus 268 yd~~~~~W~ 276 (400)
||+.+.+-.
T Consensus 159 ~d~~~~~~~ 167 (337)
T 1pby_B 159 MDPEAGTLV 167 (337)
T ss_dssp EETTTTEEE
T ss_pred EECCCCcEe
Confidence 898777643
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.11 Score=47.54 Aligned_cols=211 Identities=11% Similarity=0.078 Sum_probs=120.2
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEE--CCeEEEEE-eecCEEEEEECCCCCeEEccCCCCcceeeeEEE--ECC
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVS--GRNTIYCL-DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAM--LDG 199 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~--~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~--~~~ 199 (400)
..+..+++.......+.. ......+++.. ++. ||+. .....++.+++.....+.+...... .-.++++ .++
T Consensus 96 ~~I~~i~~~~~~~~~~~~--~~~~~~gl~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~-~p~glavd~~~g 171 (386)
T 3v65_B 96 IDIRQVLPHRSEYTLLLN--NLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNVEEVVSTGLE-SPGGLAVDWVHD 171 (386)
T ss_dssp SCEEEECTTSCCCEEEEC--SCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCCEEEEECSSCS-CCCCEEEETTTT
T ss_pred ccceeeccCCCcEEEEec--CCCccEEEEEecCCCe-EEEEeCCCCcEEEEecCCCCcEEEEeCCCC-CccEEEEEeCCC
Confidence 356777777666554432 12223455554 455 8888 4456899999987765554321111 1123333 378
Q ss_pred EEEEEcccCCCCCCCeEEEEeCCCCceEEcc--CCCCcccccEEEE--eCCEEEEEcCccccCCCCcceEEEEeCCCCce
Q psy2979 200 FVYAVGGWDGSCRLDSVERYDPTKNEWSYIE--PMKLAVTSPAVVA--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQW 275 (400)
Q Consensus 200 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~--~l~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W 275 (400)
.||+.-.. ...++++++....-..+. .+..+ .++++ .++.||+..-. . ...++++++....-
T Consensus 172 ~lY~~d~~-----~~~I~~~~~dg~~~~~l~~~~l~~P---~giavdp~~g~ly~td~~---~---~~~I~r~~~dG~~~ 237 (386)
T 3v65_B 172 KLYWTDSG-----TSRIEVANLDGAHRKVLLWQSLEKP---RAIALHPMEGTIYWTDWG---N---TPRIEASSMDGSGR 237 (386)
T ss_dssp EEEEEETT-----TTEEEECBTTSCSCEEEECSSCSCE---EEEEEETTTTEEEEEECS---S---SCEEEEEETTSCSC
T ss_pred eEEEEcCC-----CCeEEEEeCCCCceEEeecCCCCCC---cEEEEEcCCCeEEEeccC---C---CCEEEEEeCCCCCc
Confidence 99987432 246888888765433332 22222 13344 37899988533 1 25799999876544
Q ss_pred eecc--CCCCCceeeeEEE--ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCc
Q psy2979 276 QDLA--PMLIPRSGAAICA--LDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGE 351 (400)
Q Consensus 276 ~~~~--~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~ 351 (400)
+.+. .+..| .+++. .++.||+.... ...|+++|+....-..+.... ...-.++++.++.||+.--.
T Consensus 238 ~~~~~~~~~~P---nGlavd~~~~~lY~aD~~------~~~I~~~d~dG~~~~~~~~~~-~~~P~giav~~~~ly~td~~ 307 (386)
T 3v65_B 238 RIIADTHLFWP---NGLTIDYAGRRMYWVDAK------HHVIERANLDGSHRKAVISQG-LPHPFAITVFEDSLYWTDWH 307 (386)
T ss_dssp EEEECSSCSCE---EEEEEEGGGTEEEEEETT------TTEEEEECTTSCSCEEEECSS-CSSEEEEEEETTEEEEEETT
T ss_pred EEEEECCCCCe---eeEEEeCCCCEEEEEECC------CCEEEEEeCCCCeeEEEEECC-CCCceEEEEECCEEEEeeCC
Confidence 4332 22222 23343 37899999754 578999998754322222111 11234566678999998633
Q ss_pred cCCCCCCCeEEEEECCCC
Q psy2979 352 EGWDGYHDSIECYDVDND 369 (400)
Q Consensus 352 ~~~~~~~~~v~~yd~~~~ 369 (400)
...|.++|..++
T Consensus 308 ------~~~V~~~~~~~G 319 (386)
T 3v65_B 308 ------TKSINSANKFTG 319 (386)
T ss_dssp ------TTEEEEEETTTC
T ss_pred ------CCeEEEEECCCC
Confidence 357888885443
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.079 Score=46.89 Aligned_cols=224 Identities=14% Similarity=0.061 Sum_probs=120.0
Q ss_pred ceEEEEEcCCCceEEccCCc------------------ccceeeeEEEE--CCeEEEEEeecCEEEEEECCCCCeEEccC
Q psy2979 125 RSVEGFCVKTKVWKTLSCLP------------------FAISKHGLVVS--GRNTIYCLDIVDIVYVAASMHKILHSLGS 184 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~------------------~~~~~~~~~~~--~~~~iyv~~~~~~~~~yd~~~~~w~~~~~ 184 (400)
..+..||+..+++..+.... ....-++++.. ++. ||+......+..+|+.++..+.+..
T Consensus 40 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~~~~~~ 118 (322)
T 2fp8_A 40 GRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHATQLAT 118 (322)
T ss_dssp SEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEETTTEEEEECTTCEECEEEES
T ss_pred CeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEECCCCEEEEeCCCCEEEEecc
Confidence 46788888877665442110 01123566666 456 9998666779999988766555443
Q ss_pred CCCc---ceeeeEEEE--CCEEEEEcccCC------------CCCCCeEEEEeCCCCceEEccC-CCCcccccEEEEe-C
Q psy2979 185 LKFD---FDVSGIAML--DGFVYAVGGWDG------------SCRLDSVERYDPTKNEWSYIEP-MKLAVTSPAVVAH-E 245 (400)
Q Consensus 185 ~~~~---r~~~~~~~~--~~~iyv~GG~~~------------~~~~~~v~~yd~~~~~W~~~~~-l~~~~~~~~~~~~-~ 245 (400)
.... ..-..+++- ++.||+.-.... ......+++||+.+++...+.. +. .-..++.- +
T Consensus 119 ~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~---~p~gia~~~d 195 (322)
T 2fp8_A 119 SVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELH---VPGGAEVSAD 195 (322)
T ss_dssp EETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEES---CCCEEEECTT
T ss_pred cCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCc---cCcceEECCC
Confidence 2111 111223333 568998642210 0122568999998887654421 11 11233333 3
Q ss_pred C-EEEEEcCccccCCCCcceEEEEeCCCC---ceeeccCCCCCceeeeEEEE-CCeEEEEcCcCCC-----CCCCCeEEE
Q psy2979 246 G-MLYVTGGAILEDGDGIEQVQRYNPKVN---QWQDLAPMLIPRSGAAICAL-DSCIYVLGGWHAS-----TENTNRVEC 315 (400)
Q Consensus 246 ~-~iyv~GG~~~~~~~~~~~v~~yd~~~~---~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~-----~~~~~~v~~ 315 (400)
+ .+|+.-.. ...+++|+..+. .++.+..++.| .+++.- +|.||+....... .. ...+.+
T Consensus 196 g~~lyv~d~~-------~~~I~~~~~~~~~~~~~~~~~~~~gP---~gi~~d~~G~l~va~~~~~~~~~~~~~-~~~v~~ 264 (322)
T 2fp8_A 196 SSFVLVAEFL-------SHQIVKYWLEGPKKGTAEVLVKIPNP---GNIKRNADGHFWVSSSEELDGNMHGRV-DPKGIK 264 (322)
T ss_dssp SSEEEEEEGG-------GTEEEEEESSSTTTTCEEEEEECSSE---EEEEECTTSCEEEEEEEETTSSTTSCE-EEEEEE
T ss_pred CCEEEEEeCC-------CCeEEEEECCCCcCCccceEEeCCCC---CCeEECCCCCEEEEecCcccccccCCC-ccEEEE
Confidence 3 58887443 347999998753 33333323221 223322 6788887632100 00 246999
Q ss_pred EECCCCeEEEccCCc-C-ccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 316 YHIAENTWEYKSPMK-E-KRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 316 yd~~~~~W~~~~~~~-~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
||+....-..+.... . .....+++.-+++|||.... .+.|.+|++..+
T Consensus 265 ~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~------~~~i~~~~~~~~ 314 (322)
T 2fp8_A 265 FDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLF------HGSVGILVYDKK 314 (322)
T ss_dssp ECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSS------CSEEEEEEC---
T ss_pred ECCCCCEEEEEECCCCCccccceEEEEeCCEEEEeecC------CCceEEEecccc
Confidence 999765544443211 1 11223344458999997644 357889988654
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=97.25 E-value=0.11 Score=47.10 Aligned_cols=189 Identities=11% Similarity=-0.009 Sum_probs=92.4
Q ss_pred EEEEeecCEEEEEECCCCC------eEEccCCCCc---ceeeeEEEE-----CCEE-EEEcccCCCCCCCeEEEEeCCC-
Q psy2979 160 IYCLDIVDIVYVAASMHKI------LHSLGSLKFD---FDVSGIAML-----DGFV-YAVGGWDGSCRLDSVERYDPTK- 223 (400)
Q Consensus 160 iyv~~~~~~~~~yd~~~~~------w~~~~~~~~~---r~~~~~~~~-----~~~i-yv~GG~~~~~~~~~v~~yd~~~- 223 (400)
++.......+..||..+++ +..+...+.. ..-.+++.. ++.. ++.|+.+ ..+..||..+
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 158 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK-----GTTYIWKFHPF 158 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT-----SCEEEEEEESS
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC-----CcEEEEeCCcc
Confidence 3333555678888877766 5555443211 122222222 4555 6777655 3477777665
Q ss_pred -----Cc---eEEccCC--------CCcccccEEEEe-CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCC-C-C-
Q psy2979 224 -----NE---WSYIEPM--------KLAVTSPAVVAH-EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPM-L-I- 283 (400)
Q Consensus 224 -----~~---W~~~~~l--------~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~-~-~- 283 (400)
.+ |.....+ .....-.+++.. ++ ++++|+. ++ .+..||..+.+-...-.. . .
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~---dg----~i~i~d~~~~~~~~~~~~~~~h~ 230 (397)
T 1sq9_A 159 ADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN---NG----TVQISELSTLRPLYNFESQHSMI 230 (397)
T ss_dssp SSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT---TS----EEEEEETTTTEEEEEEECCC---
T ss_pred ccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeC---CC----cEEEEECCCCceeEEEecccccc
Confidence 21 1110011 011112233332 56 7777776 43 799999887653322111 0 0
Q ss_pred --CceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcC-----------ccCcceEEEE--CCEEEE
Q psy2979 284 --PRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKE-----------KRYRPGIAVI--DGKIYV 347 (400)
Q Consensus 284 --~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-----------~~~~~~~~~~--~~~lyv 347 (400)
.....+++.. ++.+++.|+.++. ...+..||..+.+-...-..+. .......+.+ +++.++
T Consensus 231 ~~~~~i~~i~~~~~~~~l~~~~~d~~---~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 307 (397)
T 1sq9_A 231 NNSNSIRSVKFSPQGSLLAIAHDSNS---FGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC 307 (397)
T ss_dssp CCCCCEEEEEECSSTTEEEEEEEETT---EEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEE
T ss_pred ccCCccceEEECCCCCEEEEEecCCC---CceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEE
Confidence 1111222222 6677777765210 1589999988765322111100 1112223333 566777
Q ss_pred EcCccCCCCCCCeEEEEECCCCc
Q psy2979 348 LGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 348 ~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
.|+. + ..|.+||..+.+
T Consensus 308 ~~~~-d-----g~i~iwd~~~~~ 324 (397)
T 1sq9_A 308 SAGW-D-----GKLRFWDVKTKE 324 (397)
T ss_dssp EEET-T-----SEEEEEETTTTE
T ss_pred EEeC-C-----CeEEEEEcCCCc
Confidence 7765 2 478999998764
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.12 Score=47.23 Aligned_cols=217 Identities=15% Similarity=0.117 Sum_probs=108.5
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEEE-CCEEEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML-DGFVYA 203 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~~~iyv 203 (400)
..+..||..+++....-. .....-.++..-++. ++.......+..+|.....-....-......-.+++.. ++..++
T Consensus 156 g~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 233 (401)
T 4aez_A 156 GLVDIYDVESQTKLRTMA-GHQARVGCLSWNRHV-LSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLA 233 (401)
T ss_dssp SCEEEEETTTCCEEEEEC-CCSSCEEEEEEETTE-EEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred CeEEEEECcCCeEEEEec-CCCCceEEEEECCCE-EEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEE
Confidence 367788877765432211 111111233333333 44446667888899874331111100111111122222 566777
Q ss_pred EcccCCCCCCCeEEEEeCCCCceEEc-cCCCCcccccEEEEe--CCEEEEEcC--ccccCCCCcceEEEEeCCCCceeec
Q psy2979 204 VGGWDGSCRLDSVERYDPTKNEWSYI-EPMKLAVTSPAVVAH--EGMLYVTGG--AILEDGDGIEQVQRYNPKVNQWQDL 278 (400)
Q Consensus 204 ~GG~~~~~~~~~v~~yd~~~~~W~~~-~~l~~~~~~~~~~~~--~~~iyv~GG--~~~~~~~~~~~v~~yd~~~~~W~~~ 278 (400)
.|+.+ ..+..||..+.+-... ...... -.+++.. ++.+++.|| . + ..+..||..+.+-...
T Consensus 234 s~~~d-----~~v~iwd~~~~~~~~~~~~~~~~--v~~~~~~p~~~~ll~~~~gs~---d----~~i~i~d~~~~~~~~~ 299 (401)
T 4aez_A 234 SGGND-----NVVQIWDARSSIPKFTKTNHNAA--VKAVAWCPWQSNLLATGGGTM---D----KQIHFWNAATGARVNT 299 (401)
T ss_dssp EEETT-----SCEEEEETTCSSEEEEECCCSSC--CCEEEECTTSTTEEEEECCTT---T----CEEEEEETTTCCEEEE
T ss_pred EEeCC-----CeEEEccCCCCCccEEecCCcce--EEEEEECCCCCCEEEEecCCC---C----CEEEEEECCCCCEEEE
Confidence 77765 3588899887653321 111111 1223322 456777765 3 3 3789999877654322
Q ss_pred cCCCCCceeeeEEEE-CCeEEEE-cCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCC
Q psy2979 279 APMLIPRSGAAICAL-DSCIYVL-GGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGW 354 (400)
Q Consensus 279 ~~~~~~r~~~~~~~~-~~~iyv~-GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~ 354 (400)
-.... .-.+++.. ++..++. +|.. ...+..||..+........++........+.+ +++.++.||. +
T Consensus 300 ~~~~~--~v~~~~~s~~~~~l~~~~g~~-----dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~-d- 370 (401)
T 4aez_A 300 VDAGS--QVTSLIWSPHSKEIMSTHGFP-----DNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAAS-D- 370 (401)
T ss_dssp EECSS--CEEEEEECSSSSEEEEEECTT-----TCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECT-T-
T ss_pred EeCCC--cEEEEEECCCCCeEEEEeecC-----CCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeC-C-
Confidence 22111 11222222 4444444 3422 45788999888777665443332222223333 6777777776 2
Q ss_pred CCCCCeEEEEECCCCc
Q psy2979 355 DGYHDSIECYDVDNDS 370 (400)
Q Consensus 355 ~~~~~~v~~yd~~~~~ 370 (400)
..|.+||..+++
T Consensus 371 ----g~i~iw~~~~~~ 382 (401)
T 4aez_A 371 ----ENLKFWRVYDGD 382 (401)
T ss_dssp ----SEEEEEECCC--
T ss_pred ----CcEEEEECCCCc
Confidence 468899988764
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.016 Score=53.88 Aligned_cols=216 Identities=12% Similarity=0.031 Sum_probs=106.6
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEc-cCCCCcceeeeEEEECCEEEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSL-GSLKFDFDVSGIAMLDGFVYA 203 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~-~~~~~~r~~~~~~~~~~~iyv 203 (400)
..+.++|..+++....-.. ....-.++...++. ++.......+..+|..++.-... ..+............++..++
T Consensus 193 g~i~vwd~~~~~~~~~~~~-h~~~v~~l~~~~~~-l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 270 (435)
T 1p22_A 193 STVRVWDVNTGEMLNTLIH-HCEAVLHLRFNNGM-MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIV 270 (435)
T ss_dssp SCEEEEESSSCCEEEEECC-CCSCEEEEECCTTE-EEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEE
T ss_pred CeEEEEECCCCcEEEEEcC-CCCcEEEEEEcCCE-EEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEE
Confidence 4677888877664321111 11111222222333 44446667788888876542211 111111111122223555566
Q ss_pred EcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCC
Q psy2979 204 VGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLI 283 (400)
Q Consensus 204 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 283 (400)
.|+.+ ..+..||..+++-... +........+...++..++.|+. ++ .+..||..+.+-.. .+..
T Consensus 271 s~~~d-----g~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~g~~---dg----~i~iwd~~~~~~~~--~~~~ 334 (435)
T 1p22_A 271 SASGD-----RTIKVWNTSTCEFVRT--LNGHKRGIACLQYRDRLVVSGSS---DN----TIRLWDIECGACLR--VLEG 334 (435)
T ss_dssp EEETT-----SEEEEEETTTCCEEEE--EECCSSCEEEEEEETTEEEEEET---TS----CEEEEETTTCCEEE--EECC
T ss_pred EEeCC-----CeEEEEECCcCcEEEE--EcCCCCcEEEEEeCCCEEEEEeC---CC----eEEEEECCCCCEEE--EEeC
Confidence 66654 4688899887753322 11111222334446677777777 44 68999987654221 1221
Q ss_pred CceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCe----------EEEccCCcCccCcceEEEECCEEEEEcCccC
Q psy2979 284 PRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENT----------WEYKSPMKEKRYRPGIAVIDGKIYVLGGEEG 353 (400)
Q Consensus 284 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~----------W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~ 353 (400)
.......+..++..++.|+. ...+..||..+.. -..+.... .....+..+++.++.||. +
T Consensus 335 h~~~v~~~~~~~~~l~sg~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~---~~v~~l~~~~~~l~s~s~-D 404 (435)
T 1p22_A 335 HEELVRCIRFDNKRIVSGAY------DGKIKVWDLVAALDPRAPAGTLCLRTLVEHS---GRVFRLQFDEFQIVSSSH-D 404 (435)
T ss_dssp CSSCEEEEECCSSEEEEEET------TSCEEEEEHHHHTSTTSCTTTTEEEEECCCS---SCCCCEEECSSCEEECCS-S
T ss_pred CcCcEEEEEecCCEEEEEeC------CCcEEEEECCCCCCccccccchheeeccCCC---CCeEEEEeCCCEEEEEeC-C
Confidence 11222334447888888876 4568888875432 12221111 111233447777788876 2
Q ss_pred CCCCCCeEEEEECCCCcEEE
Q psy2979 354 WDGYHDSIECYDVDNDSWEI 373 (400)
Q Consensus 354 ~~~~~~~v~~yd~~~~~W~~ 373 (400)
..|.+||..++.-..
T Consensus 405 -----g~i~iwd~~~~~~~~ 419 (435)
T 1p22_A 405 -----DTILIWDFLNDPAAQ 419 (435)
T ss_dssp -----SEEEEEC--------
T ss_pred -----CEEEEEECCCCCCcc
Confidence 478899988765443
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=97.20 E-value=0.093 Score=45.84 Aligned_cols=213 Identities=9% Similarity=0.013 Sum_probs=112.7
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCC-
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKF- 187 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~- 187 (400)
+.+++.+.. ...+..||+.+++...+. .+ ..-.+++.. ++. +++.. ...++.||+.+++++.+.....
T Consensus 25 ~~l~~~d~~-----~~~i~~~d~~~~~~~~~~-~~--~~~~~i~~~~dG~-l~v~~-~~~l~~~d~~~g~~~~~~~~~~~ 94 (297)
T 3g4e_A 25 NSLLFVDIP-----AKKVCRWDSFTKQVQRVT-MD--APVSSVALRQSGG-YVATI-GTKFCALNWKEQSAVVLATVDND 94 (297)
T ss_dssp TEEEEEETT-----TTEEEEEETTTCCEEEEE-CS--SCEEEEEEBTTSS-EEEEE-TTEEEEEETTTTEEEEEEECCTT
T ss_pred CEEEEEECC-----CCEEEEEECCCCcEEEEe-CC--CceEEEEECCCCC-EEEEE-CCeEEEEECCCCcEEEEEecCCC
Confidence 455555432 257889999887654332 12 112234444 455 66653 5789999999988877654321
Q ss_pred -c--ceeeeEEEECCEEEEEcccCC------CCCCCeEEEEeCCCCceEEcc-CCCCcccccEEEEe--CCEEEEEcCcc
Q psy2979 188 -D--FDVSGIAMLDGFVYAVGGWDG------SCRLDSVERYDPTKNEWSYIE-PMKLAVTSPAVVAH--EGMLYVTGGAI 255 (400)
Q Consensus 188 -~--r~~~~~~~~~~~iyv~GG~~~------~~~~~~v~~yd~~~~~W~~~~-~l~~~~~~~~~~~~--~~~iyv~GG~~ 255 (400)
+ +.....+.-++++|+..-... ......++++|+.. +...+. .+..+ .+.+.. +..+|+....
T Consensus 95 ~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~~~p---ngi~~spdg~~lyv~~~~- 169 (297)
T 3g4e_A 95 KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQVDIS---NGLDWSLDHKIFYYIDSL- 169 (297)
T ss_dssp CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEESBE---EEEEECTTSCEEEEEEGG-
T ss_pred CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeeccccc---cceEEcCCCCEEEEecCC-
Confidence 2 222222222678887431111 12234688888863 333321 11111 123332 3468888655
Q ss_pred ccCCCCcceEEEEeC--CCCceee---ccCCCCC-ceeeeEEE-ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccC
Q psy2979 256 LEDGDGIEQVQRYNP--KVNQWQD---LAPMLIP-RSGAAICA-LDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSP 328 (400)
Q Consensus 256 ~~~~~~~~~v~~yd~--~~~~W~~---~~~~~~~-r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 328 (400)
...+++||. .+..... +..++.. ..-.+++. -+|.||+.... ...+.+||+.+++....-.
T Consensus 170 ------~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~------~~~v~~~d~~tG~~~~~i~ 237 (297)
T 3g4e_A 170 ------SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN------GGRVIRLDPVTGKRLQTVK 237 (297)
T ss_dssp ------GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET------TTEEEEECTTTCCEEEEEE
T ss_pred ------CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC------CCEEEEEcCCCceEEEEEE
Confidence 347888875 4444321 1122211 11123333 26789987632 3579999999776544333
Q ss_pred CcCccCcceEEEEC----CEEEEEcCc
Q psy2979 329 MKEKRYRPGIAVID----GKIYVLGGE 351 (400)
Q Consensus 329 ~~~~~~~~~~~~~~----~~lyv~GG~ 351 (400)
+|. .....++++ +.|||....
T Consensus 238 ~p~--~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 238 LPV--DKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp CSS--SBEEEEEEESGGGCEEEEEEBC
T ss_pred CCC--CCceEEEEeCCCCCEEEEEcCC
Confidence 442 234555554 479998754
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.088 Score=45.13 Aligned_cols=195 Identities=15% Similarity=0.100 Sum_probs=109.5
Q ss_pred eeeEEEE--CCeEEEEEe-ecCEEEEEECCCCCeEEccCCCCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCC
Q psy2979 149 KHGLVVS--GRNTIYCLD-IVDIVYVAASMHKILHSLGSLKFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTK 223 (400)
Q Consensus 149 ~~~~~~~--~~~~iyv~~-~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~ 223 (400)
.++++.. ++. ||+.. ....+..+|+....-..+.+... ..-.+++.- ++.||+.-.. ...+.++++..
T Consensus 38 ~~gi~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~-~~p~~ia~d~~~~~lyv~d~~-----~~~I~~~~~~g 110 (267)
T 1npe_A 38 IIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDL-GSPEGIALDHLGRTIFWTDSQ-----LDRIEVAKMDG 110 (267)
T ss_dssp EEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTC-CCEEEEEEETTTTEEEEEETT-----TTEEEEEETTS
T ss_pred EEEEEEecCCCE-EEEEECCCCEEEEEecCCCCcEEEEECCC-CCccEEEEEecCCeEEEEECC-----CCEEEEEEcCC
Confidence 3556665 345 99884 45689999998765333322111 122234433 5799987542 35788998876
Q ss_pred CceEEccCCCCcccccEEEEe--CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE--CCeEEE
Q psy2979 224 NEWSYIEPMKLAVTSPAVVAH--EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL--DSCIYV 299 (400)
Q Consensus 224 ~~W~~~~~l~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv 299 (400)
..-..+.+...... ..++.. ++.||+.... .. ...++++++....-+.+..... ..-.+++.- ++.||+
T Consensus 111 ~~~~~~~~~~~~~P-~~i~vd~~~g~lyv~~~~---~~--~~~I~~~~~dg~~~~~~~~~~~-~~P~gia~d~~~~~lyv 183 (267)
T 1npe_A 111 TQRRVLFDTGLVNP-RGIVTDPVRGNLYWTDWN---RD--NPKIETSHMDGTNRRILAQDNL-GLPNGLTFDAFSSQLCW 183 (267)
T ss_dssp CSCEEEECSSCSSE-EEEEEETTTTEEEEEECC---SS--SCEEEEEETTSCCCEEEECTTC-SCEEEEEEETTTTEEEE
T ss_pred CCEEEEEECCCCCc-cEEEEeeCCCEEEEEECC---CC--CcEEEEEecCCCCcEEEEECCC-CCCcEEEEcCCCCEEEE
Confidence 54333322111111 233333 6899998532 11 2478888886544333322111 112333333 568999
Q ss_pred EcCcCCCCCCCCeEEEEECCCCeEEEc-cCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEE
Q psy2979 300 LGGWHASTENTNRVECYHIAENTWEYK-SPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWE 372 (400)
Q Consensus 300 ~GG~~~~~~~~~~v~~yd~~~~~W~~~-~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~ 372 (400)
.... .+.+.+||+....-..+ .... .-.+++.-++.||+.... .+.|.++|+.+++-.
T Consensus 184 ~d~~------~~~I~~~~~~g~~~~~~~~~~~---~P~gi~~d~~~lyva~~~------~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 184 VDAG------THRAECLNPAQPGRRKVLEGLQ---YPFAVTSYGKNLYYTDWK------TNSVIAMDLAISKEM 242 (267)
T ss_dssp EETT------TTEEEEEETTEEEEEEEEECCC---SEEEEEEETTEEEEEETT------TTEEEEEETTTTEEE
T ss_pred EECC------CCEEEEEecCCCceEEEecCCC---CceEEEEeCCEEEEEECC------CCeEEEEeCCCCCce
Confidence 8754 56899999976543222 2221 223555668999997643 357999999887543
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.12 Score=46.09 Aligned_cols=234 Identities=9% Similarity=0.124 Sum_probs=123.9
Q ss_pred CCceEEccC-Ccc-cceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCCC-CcceeeeEEE-ECCEEEEEcccCC
Q psy2979 134 TKVWKTLSC-LPF-AISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLK-FDFDVSGIAM-LDGFVYAVGGWDG 209 (400)
Q Consensus 134 ~~~w~~~~~-~~~-~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~-~~r~~~~~~~-~~~~iyv~GG~~~ 209 (400)
-..|..+.. .+. .....+++..++. +|++.....++.-+-.-.+|+.+.... .+-....++. -++.+|+.|..
T Consensus 65 G~tW~~~~~~~~~~~~~~~~i~~~~~~-~~~~g~~g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-- 141 (327)
T 2xbg_A 65 GQTWEPRTLVLDHSDYRFNSVSFQGNE-GWIVGEPPIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNV-- 141 (327)
T ss_dssp TSSCEECCCCCSCCCCEEEEEEEETTE-EEEEEETTEEEEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETT--
T ss_pred CCCCeECCCCCCCCCccEEEEEecCCe-EEEEECCCeEEEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCC--
Confidence 347998753 222 2233455555666 888754455665444457899877532 2222233333 36788887641
Q ss_pred CCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe-CCEEEEEcCccccCCCCcceEEEEe-CCCCceeeccCCCCCcee
Q psy2979 210 SCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH-EGMLYVTGGAILEDGDGIEQVQRYN-PKVNQWQDLAPMLIPRSG 287 (400)
Q Consensus 210 ~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yd-~~~~~W~~~~~~~~~r~~ 287 (400)
..+++-+-.-.+|+.+..... ...++++.. ++.+|++|.. + .+++-+ ....+|+.+.. +.+...
T Consensus 142 ----g~v~~S~DgG~tW~~~~~~~~-~~~~~~~~~~~~~~~~~g~~----G----~~~~S~d~gG~tW~~~~~-~~~~~~ 207 (327)
T 2xbg_A 142 ----GAIYRTKDSGKNWQALVQEAI-GVMRNLNRSPSGEYVAVSSR----G----SFYSTWEPGQTAWEPHNR-TTSRRL 207 (327)
T ss_dssp ----CCEEEESSTTSSEEEEECSCC-CCEEEEEECTTSCEEEEETT----S----SEEEEECTTCSSCEEEEC-CSSSCE
T ss_pred ----ccEEEEcCCCCCCEEeecCCC-cceEEEEEcCCCcEEEEECC----C----cEEEEeCCCCCceeECCC-CCCCcc
Confidence 135554444668998864222 222333333 5667766533 1 355543 33688998853 333344
Q ss_pred eeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECC-CCeEEEccCC--cCccCcceEEEE-CCEEEEEcCccCCCCCCCeEE
Q psy2979 288 AAICAL-DSCIYVLGGWHASTENTNRVECYHIA-ENTWEYKSPM--KEKRYRPGIAVI-DGKIYVLGGEEGWDGYHDSIE 362 (400)
Q Consensus 288 ~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~-~~~W~~~~~~--~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~ 362 (400)
+.++.. ++.+|+++. ...++..+.. ...|+.+... +.....+.+... ++.+|++|+. ..++
T Consensus 208 ~~~~~~~~g~~~~~~~-------~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~-------g~i~ 273 (327)
T 2xbg_A 208 HNMGFTPDGRLWMIVN-------GGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGA-------GALL 273 (327)
T ss_dssp EEEEECTTSCEEEEET-------TTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEEST-------TCEE
T ss_pred ceeEECCCCCEEEEeC-------CceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCC-------CeEE
Confidence 444433 678888764 2245555333 5679876532 222122222222 6789998764 2344
Q ss_pred EEECCCCcEEEecC-CCCCCCceeeEEEccccccccc
Q psy2979 363 CYDVDNDSWEIMSH-LPSARSWLGCVPLQIHKSQFVD 398 (400)
Q Consensus 363 ~yd~~~~~W~~~~~-~~~~r~~~~~~~~~~~~~~~~~ 398 (400)
+=.-...+|+.+.. .+.+-..+.++..++..++.+|
T Consensus 274 ~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G 310 (327)
T 2xbg_A 274 CSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILG 310 (327)
T ss_dssp EESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEEC
T ss_pred EeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEc
Confidence 43333568998863 2333344555555555544443
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.12 Score=45.87 Aligned_cols=226 Identities=13% Similarity=0.153 Sum_probs=123.2
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEE-eecCEEEEEECCCC--CeEEccCC------CCcc-eeee
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCL-DIVDIVYVAASMHK--ILHSLGSL------KFDF-DVSG 193 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~-~~~~~~~~yd~~~~--~w~~~~~~------~~~r-~~~~ 193 (400)
..+..+|+.+++.............+++++. ++. +|+. .....+..||+... .-..+... .... .-.+
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ 147 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTD 147 (329)
T ss_dssp CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEE
T ss_pred CcEEEEECCCCeEEeccCCCccCCceEEEECCCCC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcE
Confidence 3688999987775432211111223455554 566 8888 34568999998755 22333211 0111 1223
Q ss_pred EEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCC-------CCccccc-EEEEe-C-CEEEEEcCccccCCCC
Q psy2979 194 IAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPM-------KLAVTSP-AVVAH-E-GMLYVTGGAILEDGDG 261 (400)
Q Consensus 194 ~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l-------~~~~~~~-~~~~~-~-~~iyv~GG~~~~~~~~ 261 (400)
++.. ++.||+..+.. ...+.+||+....-..+... +...... +++.- + +.|||....
T Consensus 148 ia~~~~~g~lyv~d~~~----~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~------- 216 (329)
T 3fvz_A 148 VAVEPSTGAVFVSDGYC----NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE------- 216 (329)
T ss_dssp EEECTTTCCEEEEECSS----CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT-------
T ss_pred EEEeCCCCeEEEEeCCC----CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC-------
Confidence 4443 57899987521 25688999655433333211 1112222 33332 4 899999765
Q ss_pred cceEEEEeCCCCceeec-cCCCCCceeeeEEEECCeEEEEcCcCCCC-CCCCeEEEEECCCCeEEEc-cCCcCccCcceE
Q psy2979 262 IEQVQRYNPKVNQWQDL-APMLIPRSGAAICALDSCIYVLGGWHAST-ENTNRVECYHIAENTWEYK-SPMKEKRYRPGI 338 (400)
Q Consensus 262 ~~~v~~yd~~~~~W~~~-~~~~~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~v~~yd~~~~~W~~~-~~~~~~~~~~~~ 338 (400)
...+.+||+.+.+.... ..........+++...+.+|...|..... .....+..+|+.+++.... ...+.....+..
T Consensus 217 ~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ 296 (329)
T 3fvz_A 217 NGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHD 296 (329)
T ss_dssp TTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEE
T ss_pred CCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeE
Confidence 35899999986654432 21112222233444457777777743211 1145899999888875543 222222233334
Q ss_pred EEE--CCEEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 339 AVI--DGKIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 339 ~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
+++ +|.|||.... .+.|.+|++..
T Consensus 297 ia~~~dG~lyvad~~------~~~I~~~~~~~ 322 (329)
T 3fvz_A 297 IVASEDGTVYIGDAH------TNTVWKFTLTE 322 (329)
T ss_dssp EEECTTSEEEEEESS------SCCEEEEEEEE
T ss_pred EEECCCCCEEEEECC------CCEEEEEeCCc
Confidence 444 6799998754 34788888753
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.12 Score=46.38 Aligned_cols=225 Identities=12% Similarity=0.071 Sum_probs=105.1
Q ss_pred EEEEcCCCceEEccCCcc-cceeeeEEEECCeEEEEEe-ecCEEEEEECCCCC-eEEcc-------CCCCc-c----eee
Q psy2979 128 EGFCVKTKVWKTLSCLPF-AISKHGLVVSGRNTIYCLD-IVDIVYVAASMHKI-LHSLG-------SLKFD-F----DVS 192 (400)
Q Consensus 128 ~~yd~~~~~w~~~~~~~~-~~~~~~~~~~~~~~iyv~~-~~~~~~~yd~~~~~-w~~~~-------~~~~~-r----~~~ 192 (400)
+.++..+++...+...+. ....+.++. ++..+|+.. ....+..|+...+. ...+. .-+.+ | .-+
T Consensus 80 ~~~~~~~g~~~~~~~~~~~~~~p~~~~~-dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~ 158 (361)
T 3scy_A 80 FAFDKEKGTLHLLNTQKTMGADPCYLTT-NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLH 158 (361)
T ss_dssp EEEETTTTEEEEEEEEECSSSCEEEEEE-CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEE
T ss_pred EEEeCCCCcEEEeeEeccCCCCcEEEEE-CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcce
Confidence 444555566666554332 222233444 665366663 34578888876432 11111 00110 0 112
Q ss_pred eEEEE-CC-EEEEEcccCCCCCCCeEEEEeCCCCc-------eEEc-----cCCCCcccccEEE-EeCC-EEEEEcCccc
Q psy2979 193 GIAML-DG-FVYAVGGWDGSCRLDSVERYDPTKNE-------WSYI-----EPMKLAVTSPAVV-AHEG-MLYVTGGAIL 256 (400)
Q Consensus 193 ~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~~~~-------W~~~-----~~l~~~~~~~~~~-~~~~-~iyv~GG~~~ 256 (400)
+++.. ++ .+|+.+.. ...+..|+..... .... ...+....-..++ .-++ .+|+.+..
T Consensus 159 ~~~~spdg~~l~~~~~~-----~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-- 231 (361)
T 3scy_A 159 CVRITPDGKYLLADDLG-----TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI-- 231 (361)
T ss_dssp EEEECTTSSEEEEEETT-----TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT--
T ss_pred EEEECCCCCEEEEEeCC-----CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC--
Confidence 23332 44 57776432 2457777655433 2111 1111111111222 2345 57777643
Q ss_pred cCCCCcceEEEEeCCCCceeecc---CCCCCceeeeEEEE--CCe-EEEEcCcCCCCCCCCeEEEEE--CCCCeEEEccC
Q psy2979 257 EDGDGIEQVQRYNPKVNQWQDLA---PMLIPRSGAAICAL--DSC-IYVLGGWHASTENTNRVECYH--IAENTWEYKSP 328 (400)
Q Consensus 257 ~~~~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~v~~yd--~~~~~W~~~~~ 328 (400)
.+.+..||..+.++..+. ..+........+.+ +++ ||+.+.. . .+.+..|+ +.+++++.+..
T Consensus 232 -----~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~-~----~~~i~v~~~~~~~g~~~~~~~ 301 (361)
T 3scy_A 232 -----GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL-K----ADGVAIFKVDETNGTLTKVGY 301 (361)
T ss_dssp -----TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS-S----SCEEEEEEECTTTCCEEEEEE
T ss_pred -----CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC-C----CCEEEEEEEcCCCCcEEEeeE
Confidence 247888888777665443 22222122222333 554 5554422 0 13455554 45778777665
Q ss_pred CcCccCcceEEEE--CCE-EEEEcCccCCCCCCCeEEEEECCCCcEEEec
Q psy2979 329 MKEKRYRPGIAVI--DGK-IYVLGGEEGWDGYHDSIECYDVDNDSWEIMS 375 (400)
Q Consensus 329 ~~~~~~~~~~~~~--~~~-lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 375 (400)
.+.. .......+ +|+ ||+.+.. + ..-.+|.+|+++++-+.+.
T Consensus 302 ~~~g-~~~~~~~~spdg~~l~~~~~~-~---~~v~v~~~d~~~g~~~~~~ 346 (361)
T 3scy_A 302 QLTG-IHPRNFIITPNGKYLLVACRD-T---NVIQIFERDQATGLLTDIK 346 (361)
T ss_dssp EECS-SCCCEEEECTTSCEEEEEETT-T---TEEEEEEECTTTCCEEECS
T ss_pred ecCC-CCCceEEECCCCCEEEEEECC-C---CCEEEEEEECCCCcEeecc
Confidence 5542 22223334 454 6665533 1 1234555788888877764
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.14 Score=46.00 Aligned_cols=145 Identities=12% Similarity=0.116 Sum_probs=77.8
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEc-cCCCCcccccEEEE-e--CCEEEEEcCccccCCCCcceEEEEeCCCC
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYI-EPMKLAVTSPAVVA-H--EGMLYVTGGAILEDGDGIEQVQRYNPKVN 273 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~~l~~~~~~~~~~~-~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 273 (400)
++..++.|+.+ .++..||+.+++.... ..-.... .++.. . ++..++.|+. ++ .+..||..+.
T Consensus 165 ~~~~l~t~s~D-----~~v~lwd~~~~~~~~~~~~h~~~v--~~~~~~~~~~g~~l~sgs~---Dg----~v~~wd~~~~ 230 (354)
T 2pbi_B 165 SDMQILTASGD-----GTCALWDVESGQLLQSFHGHGADV--LCLDLAPSETGNTFVSGGC---DK----KAMVWDMRSG 230 (354)
T ss_dssp SSSEEEEEETT-----SEEEEEETTTCCEEEEEECCSSCE--EEEEECCCSSCCEEEEEET---TS----CEEEEETTTC
T ss_pred CCCEEEEEeCC-----CcEEEEeCCCCeEEEEEcCCCCCe--EEEEEEeCCCCCEEEEEeC---CC----eEEEEECCCC
Confidence 34444455544 4688899888764322 1111111 11111 1 3567788887 54 6899998877
Q ss_pred ceeeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEc
Q psy2979 274 QWQDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLG 349 (400)
Q Consensus 274 ~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~G 349 (400)
+....-.... .....+.. ++..++.|+. ...+..||..+++-...-...........+.+ ++++.+.|
T Consensus 231 ~~~~~~~~h~--~~v~~v~~~p~~~~l~s~s~------D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g 302 (354)
T 2pbi_B 231 QCVQAFETHE--SDVNSVRYYPSGDAFASGSD------DATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAG 302 (354)
T ss_dssp CEEEEECCCS--SCEEEEEECTTSSEEEEEET------TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEE
T ss_pred cEEEEecCCC--CCeEEEEEeCCCCEEEEEeC------CCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEE
Confidence 6433211111 11122222 5677777776 45788999887754332221111122233333 57777777
Q ss_pred CccCCCCCCCeEEEEECCCCc
Q psy2979 350 GEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 350 G~~~~~~~~~~v~~yd~~~~~ 370 (400)
+. + ..|.+||..+++
T Consensus 303 ~~-d-----~~i~vwd~~~~~ 317 (354)
T 2pbi_B 303 YN-D-----YTINVWDVLKGS 317 (354)
T ss_dssp ET-T-----SCEEEEETTTCS
T ss_pred EC-C-----CcEEEEECCCCc
Confidence 65 2 468899987654
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.034 Score=50.82 Aligned_cols=176 Identities=9% Similarity=-0.072 Sum_probs=84.7
Q ss_pred ceEEEEEcCCCceEEccCCcccc--------------eeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCCCCcce
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAI--------------SKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFD 190 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~--------------~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~ 190 (400)
..+..||..+++....-..+... ...+++...+..+++......+..||..+++-...-.. ....
T Consensus 171 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~-~~~~ 249 (425)
T 1r5m_A 171 NVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIG-HHGP 249 (425)
T ss_dssp CCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECC-CSSC
T ss_pred CeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeecc-CCCc
Confidence 45778888776543322211111 02233333333154446667788999887542211110 1111
Q ss_pred eeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEE-ccCCCCcccccEEEEe-CCEEEEEcCccccCCCCcceEEE
Q psy2979 191 VSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSY-IEPMKLAVTSPAVVAH-EGMLYVTGGAILEDGDGIEQVQR 267 (400)
Q Consensus 191 ~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~~l~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~v~~ 267 (400)
-.+++.. ++..++.|+.+ ..+..||..+.+... +..... .-.+++.. ++ .++.|+. + ..+..
T Consensus 250 i~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~-~l~~~~~---d----~~i~i 314 (425)
T 1r5m_A 250 ISVLEFNDTNKLLLSASDD-----GTLRIWHGGNGNSQNCFYGHSQ--SIVSASWVGDD-KVISCSM---D----GSVRL 314 (425)
T ss_dssp EEEEEEETTTTEEEEEETT-----SCEEEECSSSBSCSEEECCCSS--CEEEEEEETTT-EEEEEET---T----SEEEE
T ss_pred eEEEEECCCCCEEEEEcCC-----CEEEEEECCCCccceEecCCCc--cEEEEEECCCC-EEEEEeC---C----CcEEE
Confidence 1222222 55566666654 358888887654222 111111 11223333 45 6666666 4 37899
Q ss_pred EeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCe
Q psy2979 268 YNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENT 322 (400)
Q Consensus 268 yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 322 (400)
||..+.+-...-.............-++.+++.|+. ...+..||..+..
T Consensus 315 ~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 315 WSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFM------DGQVNVYDLKKLN 363 (425)
T ss_dssp EETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEET------TSCEEEEECHHHH
T ss_pred EECCCCcEeEecccCCccEEEEEEcCCCCEEEEEEC------CCeEEEEECCCCc
Confidence 998766533221111111111112225677777765 4568888886554
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.087 Score=48.22 Aligned_cols=215 Identities=8% Similarity=0.006 Sum_probs=103.6
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEE-ECCeEEEEE-eecCEEEEEECCCCCeEEccCCCCcceeeeEEEE-CCEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVV-SGRNTIYCL-DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML-DGFV 201 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~-~~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~~~i 201 (400)
..+..||..+.+.. ..+.........+. .++. .++. .....+..||..+++-...-. .....-.+++.. ++.+
T Consensus 78 ~~v~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~ 153 (420)
T 3vl1_A 78 GHDFLFNTIIRDGS--KMLKRADYTAVDTAKLQMR-RFILGTTEGDIKVLDSNFNLQREIDQ-AHVSEITKLKFFPSGEA 153 (420)
T ss_dssp TEEEEEECCSEETT--TTSCSCCEEEEEEECSSSC-EEEEEETTSCEEEECTTSCEEEEETT-SSSSCEEEEEECTTSSE
T ss_pred CcEEEEEeccccee--eEEecCCceEEEEEecCCC-EEEEEECCCCEEEEeCCCcceeeecc-cccCccEEEEECCCCCE
Confidence 46778887654321 11222211111122 2444 4443 555678888987665433211 111112222222 5566
Q ss_pred EEEcccCCCCCCCeEEEEeCCCCceE-EccCCCCcccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceeecc
Q psy2979 202 YAVGGWDGSCRLDSVERYDPTKNEWS-YIEPMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLA 279 (400)
Q Consensus 202 yv~GG~~~~~~~~~v~~yd~~~~~W~-~~~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~ 279 (400)
++.|+.+ ..+..||..+.+-. .+..-..+ -.+++. -++..++.|+. ++ .+..||..+.+-...-
T Consensus 154 l~s~s~d-----~~i~iwd~~~~~~~~~~~~h~~~--v~~~~~~~~~~~l~s~~~---d~----~v~iwd~~~~~~~~~~ 219 (420)
T 3vl1_A 154 LISSSQD-----MQLKIWSVKDGSNPRTLIGHRAT--VTDIAIIDRGRNVLSASL---DG----TIRLWECGTGTTIHTF 219 (420)
T ss_dssp EEEEETT-----SEEEEEETTTCCCCEEEECCSSC--EEEEEEETTTTEEEEEET---TS----CEEEEETTTTEEEEEE
T ss_pred EEEEeCC-----CeEEEEeCCCCcCceEEcCCCCc--EEEEEEcCCCCEEEEEcC---CC----cEEEeECCCCceeEEe
Confidence 6667655 46888998766421 11111111 112222 25666677776 44 6888898766532221
Q ss_pred CC-C-CCceeeeEE----------------------EECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCc
Q psy2979 280 PM-L-IPRSGAAIC----------------------ALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYR 335 (400)
Q Consensus 280 ~~-~-~~r~~~~~~----------------------~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~ 335 (400)
.. . .......++ .-++..++.|+. ...+..||..+.+-...-.... ...
T Consensus 220 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~-~~~ 292 (420)
T 3vl1_A 220 NRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV------SGVITVHNVFSKEQTIQLPSKF-TCS 292 (420)
T ss_dssp CBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET------TSCEEEEETTTCCEEEEECCTT-SSC
T ss_pred ecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC------CCeEEEEECCCCceeEEccccc-CCC
Confidence 11 0 000011111 125667777765 4578999988765322211111 111
Q ss_pred ceEEEE--CCE-EEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 336 PGIAVI--DGK-IYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 336 ~~~~~~--~~~-lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
...+.+ ++. +++.|+. + ..|.+||..+.+
T Consensus 293 v~~~~~~~~~~~~l~~g~~-d-----g~i~vwd~~~~~ 324 (420)
T 3vl1_A 293 CNSLTVDGNNANYIYAGYE-N-----GMLAQWDLRSPE 324 (420)
T ss_dssp EEEEEECSSCTTEEEEEET-T-----SEEEEEETTCTT
T ss_pred ceeEEEeCCCCCEEEEEeC-C-----CeEEEEEcCCCc
Confidence 222333 444 6677765 2 478999998753
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.085 Score=46.36 Aligned_cols=186 Identities=15% Similarity=0.106 Sum_probs=95.9
Q ss_pred EEEEeecCEEEEEECCCCCeE----EccCCCCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCC
Q psy2979 160 IYCLDIVDIVYVAASMHKILH----SLGSLKFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKL 234 (400)
Q Consensus 160 iyv~~~~~~~~~yd~~~~~w~----~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~ 234 (400)
+++......+..||..++... .+........-.+++.. ++..++.|+.+ ..+..||..+++......+..
T Consensus 65 ~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~ 139 (337)
T 1gxr_A 65 HVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA-----STLSIWDLAAPTPRIKAELTS 139 (337)
T ss_dssp EEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS-----SEEEEEECCCC--EEEEEEEC
T ss_pred EEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCC-----CcEEEEECCCCCcceeeeccc
Confidence 333333567888888765421 11111111111222222 45566666654 468899998887544433322
Q ss_pred ccccc-EEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCC
Q psy2979 235 AVTSP-AVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTN 311 (400)
Q Consensus 235 ~~~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~ 311 (400)
..... +++. -++..+++|+. ++ .+..||..+.+....-..... ...++... ++..++.|+. ..
T Consensus 140 ~~~~i~~~~~~~~~~~l~~~~~---dg----~v~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~------dg 205 (337)
T 1gxr_A 140 SAPACYALAISPDSKVCFSCCS---DG----NIAVWDLHNQTLVRQFQGHTD-GASCIDISNDGTKLWTGGL------DN 205 (337)
T ss_dssp SSSCEEEEEECTTSSEEEEEET---TS----CEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEET------TS
T ss_pred CCCceEEEEECCCCCEEEEEeC---CC----cEEEEeCCCCceeeeeecccC-ceEEEEECCCCCEEEEEec------CC
Confidence 22222 2222 25667777776 43 689999887654332111111 11222222 6667777765 56
Q ss_pred eEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEE
Q psy2979 312 RVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEI 373 (400)
Q Consensus 312 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~ 373 (400)
.+..||..+.+-...-..+.+ ...+.+ +++.+++|+. + ..+..||..+..-..
T Consensus 206 ~i~~~d~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~~-~-----~~i~~~~~~~~~~~~ 260 (337)
T 1gxr_A 206 TVRSWDLREGRQLQQHDFTSQ---IFSLGYCPTGEWLAVGME-S-----SNVEVLHVNKPDKYQ 260 (337)
T ss_dssp EEEEEETTTTEEEEEEECSSC---EEEEEECTTSSEEEEEET-T-----SCEEEEETTSSCEEE
T ss_pred cEEEEECCCCceEeeecCCCc---eEEEEECCCCCEEEEEcC-C-----CcEEEEECCCCCeEE
Confidence 899999988764433222111 122223 5666777765 2 468899988775433
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.16 Score=45.22 Aligned_cols=142 Identities=11% Similarity=0.051 Sum_probs=75.1
Q ss_pred EEEEeecCEEEEEECCCCCeEEccCCC-CcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCccc
Q psy2979 160 IYCLDIVDIVYVAASMHKILHSLGSLK-FDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVT 237 (400)
Q Consensus 160 iyv~~~~~~~~~yd~~~~~w~~~~~~~-~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~ 237 (400)
++.......+..+|..+++... .+. ....-.+++.. ++.+++.|+.+ ..+..||..+++-...-.-....
T Consensus 157 l~s~s~d~~i~~wd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~sg~~d-----~~v~~wd~~~~~~~~~~~~h~~~- 228 (340)
T 1got_B 157 IVTSSGDTTCALWDIETGQQTT--TFTGHTGDVMSLSLAPDTRLFVSGACD-----ASAKLWDVREGMCRQTFTGHESD- 228 (340)
T ss_dssp EEEEETTSCEEEEETTTTEEEE--EECCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCSEEEEECCCSSC-
T ss_pred EEEEECCCcEEEEECCCCcEEE--EEcCCCCceEEEEECCCCCEEEEEeCC-----CcEEEEECCCCeeEEEEcCCcCC-
Confidence 4444555678888987765332 111 11111122222 56677777765 35888998876533211111111
Q ss_pred ccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEE
Q psy2979 238 SPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVE 314 (400)
Q Consensus 238 ~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~ 314 (400)
-.+++. -++..++.|+. ++ .+..||..+.+-...-..+........+.. ++.+++.|+. ...+.
T Consensus 229 v~~v~~~p~~~~l~s~s~---d~----~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~------d~~i~ 295 (340)
T 1got_B 229 INAICFFPNGNAFATGSD---DA----TCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD------DFNCN 295 (340)
T ss_dssp EEEEEECTTSSEEEEEET---TS----CEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET------TSEEE
T ss_pred EEEEEEcCCCCEEEEEcC---CC----cEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECC------CCeEE
Confidence 111222 26778888887 54 688899877653221111111111222222 6778888776 46799
Q ss_pred EEECCCCe
Q psy2979 315 CYHIAENT 322 (400)
Q Consensus 315 ~yd~~~~~ 322 (400)
.||..+.+
T Consensus 296 vwd~~~~~ 303 (340)
T 1got_B 296 VWDALKAD 303 (340)
T ss_dssp EEETTTCC
T ss_pred EEEcccCc
Confidence 99987654
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.096 Score=46.49 Aligned_cols=235 Identities=14% Similarity=0.197 Sum_probs=110.9
Q ss_pred EEEEeccCCCcccceEEEEEcCCCceEEccCCc---ccceeeeEEEE-CCeEEEEE-eecCEEEEEECCCC-----CeEE
Q psy2979 112 IIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLP---FAISKHGLVVS-GRNTIYCL-DIVDIVYVAASMHK-----ILHS 181 (400)
Q Consensus 112 i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~---~~~~~~~~~~~-~~~~iyv~-~~~~~~~~yd~~~~-----~w~~ 181 (400)
+++.|+.+ ..+..||...+.+..+..+. ....-.+++.. ++. +++. .....+..+|.... .+..
T Consensus 26 ~las~~~D-----~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v~iw~~~~~~~~~~~~~~ 99 (330)
T 2hes_X 26 ILATGSTD-----RKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTS-LLAAGSFDSTVSIWAKEESADRTFEMDL 99 (330)
T ss_dssp EEEEEESS-----SCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSS-EEEEEETTSCEEEEEC-------CCCEE
T ss_pred EEEEEcCC-----CEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCC-EEEEEeCCCcEEEEEcccCcCcccccee
Confidence 55566654 46778887765443322221 11122233333 333 3333 44456777776432 1222
Q ss_pred ccCCCCcc-eeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCC--CceEEccCCCCcccccEEEE--eCCEEEEEcCcc
Q psy2979 182 LGSLKFDF-DVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTK--NEWSYIEPMKLAVTSPAVVA--HEGMLYVTGGAI 255 (400)
Q Consensus 182 ~~~~~~~r-~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~--~~W~~~~~l~~~~~~~~~~~--~~~~iyv~GG~~ 255 (400)
+..+.... .-.+++.. +++.++.|+.+ ..+..||... ..+..+..+......-..+. -++.+++.|+.
T Consensus 100 ~~~~~~h~~~V~~v~~sp~g~~las~s~D-----~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~- 173 (330)
T 2hes_X 100 LAIIEGHENEVKGVAWSNDGYYLATCSRD-----KSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSY- 173 (330)
T ss_dssp EEEEC----CEEEEEECTTSCEEEEEETT-----SCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEET-
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEEEeCC-----CEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcC-
Confidence 22221111 11112221 56667777765 3578888743 23443332222111112222 25677788877
Q ss_pred ccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE--C--CeEEEEcCcCCCCCCCCeEEEEECCC------CeEEE
Q psy2979 256 LEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL--D--SCIYVLGGWHASTENTNRVECYHIAE------NTWEY 325 (400)
Q Consensus 256 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~v~~yd~~~------~~W~~ 325 (400)
++ .+..||..+..|..+..+.........+.. + +..++.|+. ...+..||..+ ..|..
T Consensus 174 --D~----~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~------D~~v~iw~~~~~~~~~~~~~~~ 241 (330)
T 2hes_X 174 --DD----TVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD------DSTVRVWKYMGDDEDDQQEWVC 241 (330)
T ss_dssp --TS----CEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET------TSCEEEEEEEEECTTSCEEEEE
T ss_pred --CC----eEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC------CCeEEEEEecCCCccccceeEE
Confidence 54 578888777777665443322111112222 2 345666665 23455555432 24555
Q ss_pred ccCCcCccC-cceEEEE-CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecC
Q psy2979 326 KSPMKEKRY-RPGIAVI-DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSH 376 (400)
Q Consensus 326 ~~~~~~~~~-~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 376 (400)
...++.... ....+.. .+.+++.||. + ..|.+||..++.|+.+..
T Consensus 242 ~~~~~~~h~~~v~~v~~s~~~~l~s~~~-d-----g~v~iw~~~~~~~~~~~~ 288 (330)
T 2hes_X 242 EAILPDVHKRQVYNVAWGFNGLIASVGA-D-----GVLAVYEEVDGEWKVFAK 288 (330)
T ss_dssp EEECCSCCSSCEEEEEECTTSCEEEEET-T-----SCEEEEEEETTEEEEEEE
T ss_pred eeecccccccceEEEEEcCCCEEEEEeC-C-----CEEEEEEcCCCceEEEec
Confidence 444432111 1112222 3445566665 2 367889988888876643
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.16 Score=46.40 Aligned_cols=142 Identities=11% Similarity=0.039 Sum_probs=72.5
Q ss_pred EEEEeecCEEEEEECCCCCeEEccCCCCcceeee-EEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccc
Q psy2979 160 IYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSG-IAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTS 238 (400)
Q Consensus 160 iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~ 238 (400)
++.......+..||..+.+. ...+........ ....++..++.|+.+ ..+..||..+++-...-.-.. ..-
T Consensus 71 l~~~~~d~~v~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~h~-~~v 142 (420)
T 3vl1_A 71 LYKARLDGHDFLFNTIIRDG--SKMLKRADYTAVDTAKLQMRRFILGTTE-----GDIKVLDSNFNLQREIDQAHV-SEI 142 (420)
T ss_dssp EEEEEETTEEEEEECCSEET--TTTSCSCCEEEEEEECSSSCEEEEEETT-----SCEEEECTTSCEEEEETTSSS-SCE
T ss_pred EEEEEcCCcEEEEEecccce--eeEEecCCceEEEEEecCCCEEEEEECC-----CCEEEEeCCCcceeeeccccc-Ccc
Confidence 44444445677777654332 122222211111 112266777777765 358889988775443311111 111
Q ss_pred cEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCcee-eccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEE
Q psy2979 239 PAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQ-DLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVEC 315 (400)
Q Consensus 239 ~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~ 315 (400)
.+++. -++.+++.|+. ++ .+..||..+.+-. .+..- ...-.+++.. ++..++.|+. ...+..
T Consensus 143 ~~~~~~~~~~~l~s~s~---d~----~i~iwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~~~------d~~v~i 207 (420)
T 3vl1_A 143 TKLKFFPSGEALISSSQ---DM----QLKIWSVKDGSNPRTLIGH--RATVTDIAIIDRGRNVLSASL------DGTIRL 207 (420)
T ss_dssp EEEEECTTSSEEEEEET---TS----EEEEEETTTCCCCEEEECC--SSCEEEEEEETTTTEEEEEET------TSCEEE
T ss_pred EEEEECCCCCEEEEEeC---CC----eEEEEeCCCCcCceEEcCC--CCcEEEEEEcCCCCEEEEEcC------CCcEEE
Confidence 12222 25667777776 43 7899998765421 11111 1111222222 5666777765 457889
Q ss_pred EECCCCeEE
Q psy2979 316 YHIAENTWE 324 (400)
Q Consensus 316 yd~~~~~W~ 324 (400)
||..+++-.
T Consensus 208 wd~~~~~~~ 216 (420)
T 3vl1_A 208 WECGTGTTI 216 (420)
T ss_dssp EETTTTEEE
T ss_pred eECCCCcee
Confidence 998877643
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.06 Score=47.72 Aligned_cols=198 Identities=13% Similarity=0.104 Sum_probs=104.1
Q ss_pred CCeEEEEE-eecCEEEEEECCCCCeEEccCCCCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEc-cCC
Q psy2979 156 GRNTIYCL-DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYI-EPM 232 (400)
Q Consensus 156 ~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~~l 232 (400)
++. +|+. .....++.||+.+++........ ...-.+++.- ++++|+.+... ......+.+||+.+++...+ ...
T Consensus 55 ~g~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~i~~~~dg~l~v~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~ 131 (333)
T 2dg1_A 55 QGQ-LFLLDVFEGNIFKINPETKEIKRPFVSH-KANPAAIKIHKDGRLFVCYLGD-FKSTGGIFAATENGDNLQDIIEDL 131 (333)
T ss_dssp TSC-EEEEETTTCEEEEECTTTCCEEEEEECS-SSSEEEEEECTTSCEEEEECTT-SSSCCEEEEECTTSCSCEEEECSS
T ss_pred CCC-EEEEECCCCEEEEEeCCCCcEEEEeeCC-CCCcceEEECCCCcEEEEeCCC-CCCCceEEEEeCCCCEEEEEEccC
Confidence 455 8876 34567999999988876653211 1122233332 66788865322 11124689999998876532 222
Q ss_pred CCcccccEEEE-eCCEEEEEcCccccCCCC-cceEEEEeCCCCceeeccC-CCCCceeeeEEEE-CC-eEEEEcCcCCCC
Q psy2979 233 KLAVTSPAVVA-HEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLAP-MLIPRSGAAICAL-DS-CIYVLGGWHAST 307 (400)
Q Consensus 233 ~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~~-~~~~r~~~~~~~~-~~-~iyv~GG~~~~~ 307 (400)
.....-..++. -++.+|+..... .... ...++++|+.+.+...+.. ... ..+++.. ++ .+|+....
T Consensus 132 ~~~~~~~~i~~d~~g~l~v~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~i~~~~dg~~l~v~~~~---- 202 (333)
T 2dg1_A 132 STAYCIDDMVFDSKGGFYFTDFRG--YSTNPLGGVYYVSPDFRTVTPIIQNISV---ANGIALSTDEKVLWVTETT---- 202 (333)
T ss_dssp SSCCCEEEEEECTTSCEEEEECCC--BTTBCCEEEEEECTTSCCEEEEEEEESS---EEEEEECTTSSEEEEEEGG----
T ss_pred ccCCcccceEECCCCCEEEEeccc--cccCCCceEEEEeCCCCEEEEeecCCCc---ccceEECCCCCEEEEEeCC----
Confidence 21111112222 367888865420 0011 3579999998776655421 111 1223222 44 47777533
Q ss_pred CCCCeEEEEECCC--CeEEEcc-----CCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEe
Q psy2979 308 ENTNRVECYHIAE--NTWEYKS-----PMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 308 ~~~~~v~~yd~~~--~~W~~~~-----~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 374 (400)
...+++||+.+ .....+. ..+. ........+ +|++|+.... ...|.+||+....-..+
T Consensus 203 --~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~l~v~~~~------~~~v~~~d~~g~~~~~~ 269 (333)
T 2dg1_A 203 --ANRLHRIALEDDGVTIQPFGATIPYYFTG-HEGPDSCCIDSDDNLYVAMYG------QGRVLVFNKRGYPIGQI 269 (333)
T ss_dssp --GTEEEEEEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEBTTCCEEEEEET------TTEEEEECTTSCEEEEE
T ss_pred --CCeEEEEEecCCCcCcccccceEEEecCC-CCCCCceEECCCCCEEEEEcC------CCEEEEECCCCCEEEEE
Confidence 45799999854 2332211 1111 112222333 5788887532 24689999965544443
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.022 Score=57.29 Aligned_cols=236 Identities=13% Similarity=0.083 Sum_probs=120.2
Q ss_pred EEEEeccCCCcccceEEEEEcCCCceEEccCCcccce-eeeEEEE-C--CeEEEEEeecCEEEEEECCCCCeEEccCCCC
Q psy2979 112 IIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAIS-KHGLVVS-G--RNTIYCLDIVDIVYVAASMHKILHSLGSLKF 187 (400)
Q Consensus 112 i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~-~~~~~~~-~--~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~ 187 (400)
.++.|+.+ ..+.+||...+.+..+..+..... -.+++.. + +..++.......+..+|..+++|.....+..
T Consensus 23 ~latg~~d-----g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~ 97 (753)
T 3jro_A 23 RLATCSSD-----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV 97 (753)
T ss_dssp CEEEEETT-----TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECC
T ss_pred eEEEEECC-----CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccC
Confidence 45556554 467888877666655443332222 2233332 2 3413333555678888988887766555432
Q ss_pred cceeeeEEEE--C--CEEEEEcccCCCCCCCeEEEEeCCCCceEE---ccCCCCcccccEEEEe--------------CC
Q psy2979 188 DFDVSGIAML--D--GFVYAVGGWDGSCRLDSVERYDPTKNEWSY---IEPMKLAVTSPAVVAH--------------EG 246 (400)
Q Consensus 188 ~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~---~~~l~~~~~~~~~~~~--------------~~ 246 (400)
.......+.. + +.+++.|+.+ ..+..||..++.-.. ....+... .+++.. ++
T Consensus 98 h~~~V~~v~~sp~~~~~~l~sgs~d-----g~I~vwdl~~~~~~~~~~~~~~~~~v--~~l~~~p~~~~~~~~~~~~~d~ 170 (753)
T 3jro_A 98 HSASVNSVQWAPHEYGPLLLVASSD-----GKVSVVEFKENGTTSPIIIDAHAIGV--NSASWAPATIEEDGEHNGTKES 170 (753)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEETT-----SEEEEEECCSSSCCCCEEEECCSSCE--EEEEECCCC---------CGGG
T ss_pred CCCCeEEEEECCCCCCCEEEEEeCC-----CcEEEEEeecCCCcceeEeecCCCce--EEEEecCcccccccccccCCCC
Confidence 2222222222 3 6677777755 357888887662111 11111111 111111 35
Q ss_pred EEEEEcCccccCCCCcceEEEEeCCCC--ceeeccCCCCCceeeeEEEE--C---CeEEEEcCcCCCCCCCCeEEEEECC
Q psy2979 247 MLYVTGGAILEDGDGIEQVQRYNPKVN--QWQDLAPMLIPRSGAAICAL--D---SCIYVLGGWHASTENTNRVECYHIA 319 (400)
Q Consensus 247 ~iyv~GG~~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~r~~~~~~~~--~---~~iyv~GG~~~~~~~~~~v~~yd~~ 319 (400)
..+++|+. ++ .+..||..+. .+.....+.........+.. + +.+++.||. ...+..||..
T Consensus 171 ~~l~sgs~---dg----~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~------Dg~I~iwd~~ 237 (753)
T 3jro_A 171 RKFVTGGA---DN----LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ------DRTCIIWTQD 237 (753)
T ss_dssp CCEEEEET---TS----CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES------SSCEEEEEES
T ss_pred CEEEEEEC---CC----eEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec------CCEEEEecCC
Confidence 67777776 54 5777776544 34444333221122222222 4 678888876 4568888877
Q ss_pred CCe--EEE-ccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCC-CcEEEecCCC
Q psy2979 320 ENT--WEY-KSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDN-DSWEIMSHLP 378 (400)
Q Consensus 320 ~~~--W~~-~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~-~~W~~~~~~~ 378 (400)
+.. +.. +............+.. +++.++.||. + ..|.+||..+ +.|.....+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~-D-----g~I~vwd~~~~~~~~~~~~~~ 296 (753)
T 3jro_A 238 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG-D-----NKVTLWKENLEGKWEPAGEVH 296 (753)
T ss_dssp SSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECS-S-----SCEECCBCCSSSCCBCCCCBC
T ss_pred CCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcC-C-----CEEEEEecCCCCCcccccccc
Confidence 653 111 1111111111122222 6777777776 2 3578888874 5677665443
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=97.02 E-value=0.15 Score=44.58 Aligned_cols=175 Identities=11% Similarity=0.117 Sum_probs=89.3
Q ss_pred CEEEEEECCCCCeEEccCCCCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEE--E
Q psy2979 167 DIVYVAASMHKILHSLGSLKFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVV--A 243 (400)
Q Consensus 167 ~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~--~ 243 (400)
..+..+|..+++....-.- ....-.+++.. ++..++.|+.+ ..+..||..+++-... +......-..+ .
T Consensus 45 g~i~iw~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d-----~~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~ 116 (312)
T 4ery_A 45 KLIKIWGAYDGKFEKTISG-HKLGISDVAWSSDSNLLVSASDD-----KTLKIWDVSSGKCLKT--LKGHSNYVFCCNFN 116 (312)
T ss_dssp SCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEE--EECCSSCEEEEEEC
T ss_pred CeEEEEeCCCcccchhhcc-CCCceEEEEEcCCCCEEEEECCC-----CEEEEEECCCCcEEEE--EcCCCCCEEEEEEc
Confidence 4566677766655432111 11111122222 55667777755 4688899887753221 11111111111 2
Q ss_pred eCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCC
Q psy2979 244 HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAEN 321 (400)
Q Consensus 244 ~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~ 321 (400)
-++..++.|+. ++ .+..||..+.+-... ++........+.. ++.+++.|+. ...+..||..++
T Consensus 117 ~~~~~l~s~~~---d~----~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~~wd~~~~ 181 (312)
T 4ery_A 117 PQSNLIVSGSF---DE----SVRIWDVKTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSY------DGLCRIWDTASG 181 (312)
T ss_dssp SSSSEEEEEET---TS----CEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEET------TSCEEEEETTTC
T ss_pred CCCCEEEEEeC---CC----cEEEEECCCCEEEEE--ecCCCCcEEEEEEcCCCCEEEEEeC------CCcEEEEECCCC
Confidence 25667777777 44 688999876653221 1111111122222 6677777776 457889999877
Q ss_pred eEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcE
Q psy2979 322 TWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSW 371 (400)
Q Consensus 322 ~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W 371 (400)
+....-.... ......+.+ +++.++.|+. + ..|.+||..+.+-
T Consensus 182 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~-d-----~~i~iwd~~~~~~ 226 (312)
T 4ery_A 182 QCLKTLIDDD-NPPVSFVKFSPNGKYILAATL-D-----NTLKLWDYSKGKC 226 (312)
T ss_dssp CEEEEECCSS-CCCEEEEEECTTSSEEEEEET-T-----TEEEEEETTTTEE
T ss_pred ceeeEEeccC-CCceEEEEECCCCCEEEEEcC-C-----CeEEEEECCCCcE
Confidence 6433211111 111122233 5666666665 2 4788999887653
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.17 Score=50.70 Aligned_cols=208 Identities=14% Similarity=0.163 Sum_probs=111.2
Q ss_pred eEEEEEcCCCceEEccCCcc-----cceeeeEEEE-CCeEEEEEeecCEEEEEECCC------CCeE---E---ccCCCC
Q psy2979 126 SVEGFCVKTKVWKTLSCLPF-----AISKHGLVVS-GRNTIYCLDIVDIVYVAASMH------KILH---S---LGSLKF 187 (400)
Q Consensus 126 ~~~~yd~~~~~w~~~~~~~~-----~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~------~~w~---~---~~~~~~ 187 (400)
-+..||+.++++..+..... ...-.++..- ++. |++.....-+++||+.+ ..+. . ...++.
T Consensus 393 GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 471 (758)
T 3ott_A 393 SINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQ-LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSG 471 (758)
T ss_dssp EEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSE-EEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSC
T ss_pred cHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCC-EEEEECCCceEEEccccccccCCcceeccccccccccccc
Confidence 46788988888776531110 1111233332 345 77765556788888753 1221 1 111221
Q ss_pred cceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccC--CCCcccccEEEE-eCCEEEEEcCccccCCCCcc
Q psy2979 188 DFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEP--MKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIE 263 (400)
Q Consensus 188 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~--l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~ 263 (400)
. .-.++..- ++.|+++||.. .-+.+||+.+++++.... ++....-.++.. -+|.|++.. . .
T Consensus 472 ~-~i~~i~~d~~g~lWi~~~t~-----~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~--------~ 536 (758)
T 3ott_A 472 M-FINQIIPDNEGNVWVLLYNN-----KGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-H--------G 536 (758)
T ss_dssp S-CEEEEEECTTSCEEEEETTC-----SSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-T--------T
T ss_pred c-eeeeEEEcCCCCEEEEccCC-----CCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-c--------C
Confidence 1 11122222 57899866653 248999999999887642 211111112222 367888643 2 2
Q ss_pred eEEEEeCCCCceeecc--CCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE
Q psy2979 264 QVQRYNPKVNQWQDLA--PMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI 341 (400)
Q Consensus 264 ~v~~yd~~~~~W~~~~--~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 341 (400)
.+.+|||.+++++... .+|.. ...++..-+|.|++.. .+-+.+|||.+.+..... ++..... .++..
T Consensus 537 Gl~~~~~~~~~~~~~~~~gl~~~-~i~~i~~~~g~lWi~t--------~~Gl~~~~~~~~~~~~~~-~~~~~~~-~~~~~ 605 (758)
T 3ott_A 537 GVMRINPKDESQQSISFGSFSNN-EILSMTCVKNSIWVST--------TNGLWIIDRKTMDARQQN-MTNKRFT-SLLFD 605 (758)
T ss_dssp EEEEECC--CCCCBCCCCC---C-CEEEEEEETTEEEEEE--------SSCEEEEETTTCCEEEC---CCCCCS-EEEEE
T ss_pred ceEEEecCCCceEEecccCCCcc-ceEEEEECCCCEEEEC--------CCCeEEEcCCCceeEEec-CCCCcee-eeEEE
Confidence 6899999988877653 33322 2233444588898876 346899999998877643 3322222 22222
Q ss_pred --CCEEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 342 --DGKIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 342 --~~~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
+|.||+ ||. +.+..|||+.
T Consensus 606 ~~~G~l~f-G~~-------~Gl~~f~p~~ 626 (758)
T 3ott_A 606 PKEDCVYL-GGA-------DGFGISHSNL 626 (758)
T ss_dssp TTTTEEEE-ECB-------SEEEEEEC--
T ss_pred CCCCcEEE-ecC-------CceEEEChhh
Confidence 677776 444 3567888864
|
| >3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B | Back alignment and structure |
|---|
Probab=96.99 E-value=2.3e-05 Score=67.94 Aligned_cols=79 Identities=14% Similarity=0.348 Sum_probs=55.8
Q ss_pred hhHHHHHHHHHhcCceeceE-------EEECCeEEehhhHHHhhcCcccc------------ccceeecCCCCHHHHHHH
Q psy2979 2 KMVLTGFNEARKNNEFCDVT-------LCVDGSKFPAHRVVLAASSPYFK------------VLETIRLPQLSPYFLHDC 62 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~-------l~~~~~~~~~hr~vLaa~s~yf~------------~m~~vrl~~l~~~~l~~~ 62 (400)
++|..+|.++.+++.|.++. |..|+..++.+..|+.|+..|.+ +|++|||+.|++++|.+.
T Consensus 157 ~~i~~~f~~v~~~~~f~~L~~~~l~~lL~~d~L~v~~E~~v~~av~~W~~~~~~~R~~~~~~ll~~VRf~~l~~~~l~~~ 236 (256)
T 3hve_A 157 EYLETHFRDVSSTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRWIAHDTEIRKVHMKDVMSALWVSGLDSSYLREQ 236 (256)
T ss_dssp HHHHHHHHHHTTCHHHHSSCHHHHHHHHHCC-------CTTHHHHTTTCCC--CCSTTTHHHHHHHHHHHTTCC-CHHHH
T ss_pred HHHHHHHHHHhCCcchhcCCHHHHHHHHccCCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 46788999999999998884 56677777888888888887763 678999999999999999
Q ss_pred hhhcccccCc-hhHHHHHH
Q psy2979 63 VEQCAIIKNN-PQCAQLVE 80 (400)
Q Consensus 63 i~~~~l~~~~-~~c~~~l~ 80 (400)
+++++++... +.|++++.
T Consensus 237 v~~~~l~~~~~~~c~~ll~ 255 (256)
T 3hve_A 237 MLNEPLVREIVKECSNIPL 255 (256)
T ss_dssp HHTSTTHHHHHCC------
T ss_pred HhcChHHHhhHHHHHHHhh
Confidence 9999999988 78998875
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.19 Score=45.19 Aligned_cols=210 Identities=11% Similarity=0.064 Sum_probs=120.2
Q ss_pred eEEEEEcCCCceEEccCCcccceeeeEEEE--CCeEEEEE-eecCEEEEEECCCCCeEEccC--CCCcceeeeEEE--EC
Q psy2979 126 SVEGFCVKTKVWKTLSCLPFAISKHGLVVS--GRNTIYCL-DIVDIVYVAASMHKILHSLGS--LKFDFDVSGIAM--LD 198 (400)
Q Consensus 126 ~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~--~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~--~~~~r~~~~~~~--~~ 198 (400)
.+..+++.......+.. ......+++.. ++. ||+. .....++.+++.....+.+.. +..| .++++ .+
T Consensus 54 ~I~~i~~~g~~~~~~~~--~~~~~~~l~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p---~glavd~~~ 127 (349)
T 3v64_C 54 DIRQVLPHRSEYTLLLN--NLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNVEEVVSTGLESP---GGLAVDWVH 127 (349)
T ss_dssp CEEEECTTSCCEEEEEC--SCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCC---CEEEEETTT
T ss_pred ceEEEeCCCCeeEEeec--CCCceEEEEEeccccE-EEEEeccCCceEEEecCCCCceEEEeCCCCCc---cEEEEecCC
Confidence 46677777666654432 12223455543 455 8888 445689999998776554432 2222 23333 37
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCCceEEcc--CCCCcccccEEEEe--CCEEEEEcCccccCCCCcceEEEEeCCCCc
Q psy2979 199 GFVYAVGGWDGSCRLDSVERYDPTKNEWSYIE--PMKLAVTSPAVVAH--EGMLYVTGGAILEDGDGIEQVQRYNPKVNQ 274 (400)
Q Consensus 199 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~--~l~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 274 (400)
+.||+.-.. ...++++++....-..+. .+..++ ++++- ++.||+..-. . ...++++++....
T Consensus 128 g~ly~~d~~-----~~~I~~~~~dG~~~~~l~~~~l~~P~---~iavdp~~g~ly~td~~---~---~~~I~r~~~dG~~ 193 (349)
T 3v64_C 128 DKLYWTDSG-----TSRIEVANLDGAHRKVLLWQSLEKPR---AIALHPMEGTIYWTDWG---N---TPRIEASSMDGSG 193 (349)
T ss_dssp TEEEEEETT-----TTEEEEEETTSCSCEEEECTTCSCEE---EEEEETTTTEEEEEECS---S---SCEEEEEETTSCS
T ss_pred CeEEEEcCC-----CCeEEEEcCCCCceEEEEeCCCCCcc---eEEEecCcCeEEEeccC---C---CCEEEEEeCCCCC
Confidence 899987432 357889988765433332 222222 33443 7899998543 1 2579999987655
Q ss_pred eeeccCCCCCceeeeEEE--ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCcc
Q psy2979 275 WQDLAPMLIPRSGAAICA--LDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEE 352 (400)
Q Consensus 275 W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~ 352 (400)
-+.+..-... .-.+++. .++.||+.... ...++++|+....-..+.... ...-.++++.++.||+.-..
T Consensus 194 ~~~~~~~~~~-~PnGla~d~~~~~lY~aD~~------~~~I~~~~~dG~~~~~~~~~~-~~~P~giav~~~~ly~td~~- 264 (349)
T 3v64_C 194 RRIIADTHLF-WPNGLTIDYAGRRMYWVDAK------HHVIERANLDGSHRKAVISQG-LPHPFAITVFEDSLYWTDWH- 264 (349)
T ss_dssp CEESCCSSCS-CEEEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEECSS-CSSEEEEEEETTEEEEEETT-
T ss_pred cEEEEECCCC-CcceEEEeCCCCEEEEEECC------CCEEEEEeCCCCceEEEEeCC-CCCceEEEEECCEEEEecCC-
Confidence 4444221111 1123333 37899998754 568999998754322222111 11234566679999998643
Q ss_pred CCCCCCCeEEEEECCCC
Q psy2979 353 GWDGYHDSIECYDVDND 369 (400)
Q Consensus 353 ~~~~~~~~v~~yd~~~~ 369 (400)
...|.++|..++
T Consensus 265 -----~~~V~~~~~~~G 276 (349)
T 3v64_C 265 -----TKSINSANKFTG 276 (349)
T ss_dssp -----TTEEEEEETTTC
T ss_pred -----CCeEEEEEccCC
Confidence 356778875444
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.1 Score=47.57 Aligned_cols=216 Identities=15% Similarity=0.038 Sum_probs=106.4
Q ss_pred EEEE-eecCEEEEEECCCCCeEE-----ccCCC-CcceeeeEEEE-CC-EEEEEcccCCCCCCCeEEEEeCCCCceEEcc
Q psy2979 160 IYCL-DIVDIVYVAASMHKILHS-----LGSLK-FDFDVSGIAML-DG-FVYAVGGWDGSCRLDSVERYDPTKNEWSYIE 230 (400)
Q Consensus 160 iyv~-~~~~~~~~yd~~~~~w~~-----~~~~~-~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 230 (400)
+++. .....+..+|..++.... +..+. ....-.+++.. ++ .+++.|+.+ ..+..||..+++....-
T Consensus 96 ~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~ 170 (402)
T 2aq5_A 96 VIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD-----NVILVWDVGTGAAVLTL 170 (402)
T ss_dssp EEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT-----SCEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC-----CEEEEEECCCCCccEEE
Confidence 4444 555678889988764321 11111 11111122222 33 477777765 35889999887654322
Q ss_pred C-CCCcccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceeecc--CCCCCceeeeEEEECCeEEEEcCcCCC
Q psy2979 231 P-MKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLA--PMLIPRSGAAICALDSCIYVLGGWHAS 306 (400)
Q Consensus 231 ~-l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~r~~~~~~~~~~~iyv~GG~~~~ 306 (400)
. ......-.+++. -++..++.|+. ++ .+..||+.+.+-...- .-...+....+..-++.+++.|.....
T Consensus 171 ~~~~~~~~v~~~~~~~~~~~l~~~~~---d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~ 243 (402)
T 2aq5_A 171 GPDVHPDTIYSVDWSRDGALICTSCR---DK----RVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMS 243 (402)
T ss_dssp CTTTCCSCEEEEEECTTSSCEEEEET---TS----EEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTC
T ss_pred ecCCCCCceEEEEECCCCCEEEEEec---CC----cEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCC
Confidence 1 011111112222 26777777776 43 7999999876543221 111111122222336777777621111
Q ss_pred CCCCCeEEEEECCCCeE-EEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCc--EEEecCCCCCC
Q psy2979 307 TENTNRVECYHIAENTW-EYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDS--WEIMSHLPSAR 381 (400)
Q Consensus 307 ~~~~~~v~~yd~~~~~W-~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r 381 (400)
...+..||..+..- .....+........++.. +..+++.|+. + ..|.+||..+++ ...+.......
T Consensus 244 ---d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~-d-----g~i~i~d~~~~~~~~~~l~~~~~~~ 314 (402)
T 2aq5_A 244 ---ERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKG-D-----SSIRYFEITSEAPFLHYLSMFSSKE 314 (402)
T ss_dssp ---CEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETT-C-----SCEEEEEECSSTTCEEEEEEECCSS
T ss_pred ---CceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcC-C-----CeEEEEEecCCCcceEeecccccCC
Confidence 46899999876431 011111111111122222 3456667754 2 368889988876 55555444333
Q ss_pred CceeeEEEccccccc
Q psy2979 382 SWLGCVPLQIHKSQF 396 (400)
Q Consensus 382 ~~~~~~~~~~~~~~~ 396 (400)
.-.+++...+..++.
T Consensus 315 ~v~~~~~sp~~~~~~ 329 (402)
T 2aq5_A 315 SQRGMGYMPKRGLEV 329 (402)
T ss_dssp CCSEEEECCGGGSCG
T ss_pred cccceEEecccccce
Confidence 344555555555443
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.12 Score=47.59 Aligned_cols=221 Identities=9% Similarity=0.080 Sum_probs=106.3
Q ss_pred EEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEE-eecCEEEEEECCCCCeEEccCCCCc
Q psy2979 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCL-DIVDIVYVAASMHKILHSLGSLKFD 188 (400)
Q Consensus 111 ~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~ 188 (400)
.+++.|+.+ ..+.++|..+++....-... ...-.+++.. ++. +++. .....+..+|..+.+- +..+...
T Consensus 121 ~~l~s~s~D-----g~i~vwd~~~~~~~~~l~~h-~~~V~~v~~~~~~~-~l~sgs~D~~i~iwd~~~~~~--~~~~~~h 191 (410)
T 1vyh_C 121 SVMVSASED-----ATIKVWDYETGDFERTLKGH-TDSVQDISFDHSGK-LLASCSADMTIKLWDFQGFEC--IRTMHGH 191 (410)
T ss_dssp SEEEEEESS-----SCEEEEETTTCCCCEEECCC-SSCEEEEEECTTSS-EEEEEETTSCCCEEETTSSCE--EECCCCC
T ss_pred CEEEEEeCC-----CeEEEEECCCCcEEEEEecc-CCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCce--eEEEcCC
Confidence 345555544 46788888776533211101 1111233333 333 3333 4445677788765442 2222211
Q ss_pred c-eeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEE--EeCCEEEEEcCccccCCCCcce
Q psy2979 189 F-DVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVV--AHEGMLYVTGGAILEDGDGIEQ 264 (400)
Q Consensus 189 r-~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~--~~~~~iyv~GG~~~~~~~~~~~ 264 (400)
. .-.+++.. ++..++.|+.+ ..+..||..+++.... +.........+ .-++.+++.|+. ++ .
T Consensus 192 ~~~V~~v~~~p~~~~l~s~s~D-----~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~g~~l~s~s~---D~----~ 257 (410)
T 1vyh_C 192 DHNVSSVSIMPNGDHIVSASRD-----KTIKMWEVQTGYCVKT--FTGHREWVRMVRPNQDGTLIASCSN---DQ----T 257 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEETT-----SEEEEEETTTCCEEEE--EECCSSCEEEEEECTTSSEEEEEET---TS----C
T ss_pred CCCEEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCcEEEE--EeCCCccEEEEEECCCCCEEEEEcC---CC----e
Confidence 1 11122222 45666667755 4688899888754321 11111111111 236777788877 54 6
Q ss_pred EEEEeCCCCceeeccCCCCCceeeeEEE----------------------ECCeEEEEcCcCCCCCCCCeEEEEECCCCe
Q psy2979 265 VQRYNPKVNQWQDLAPMLIPRSGAAICA----------------------LDSCIYVLGGWHASTENTNRVECYHIAENT 322 (400)
Q Consensus 265 v~~yd~~~~~W~~~~~~~~~r~~~~~~~----------------------~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 322 (400)
+..||..+...... +.........+. ..+.+++.|+. ...+..||..+++
T Consensus 258 v~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~------D~~i~iwd~~~~~ 329 (410)
T 1vyh_C 258 VRVWVVATKECKAE--LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR------DKTIKMWDVSTGM 329 (410)
T ss_dssp EEEEETTTCCEEEE--ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET------TSEEEEEETTTTE
T ss_pred EEEEECCCCceeeE--ecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC------CCeEEEEECCCCc
Confidence 78888776653321 100000001111 12556677765 4679999988775
Q ss_pred EEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 323 WEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 323 W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
-... +.........+.+ +++.++.||. + ..|.+||..+.+
T Consensus 330 ~~~~--~~~h~~~v~~v~~~~~g~~l~s~s~-D-----~~i~vwd~~~~~ 371 (410)
T 1vyh_C 330 CLMT--LVGHDNWVRGVLFHSGGKFILSCAD-D-----KTLRVWDYKNKR 371 (410)
T ss_dssp EEEE--EECCSSCEEEEEECSSSSCEEEEET-T-----TEEEEECCTTSC
T ss_pred eEEE--EECCCCcEEEEEEcCCCCEEEEEeC-C-----CeEEEEECCCCc
Confidence 3221 1111111122233 5666667765 2 468888886653
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.3 Score=47.18 Aligned_cols=117 Identities=12% Similarity=0.126 Sum_probs=70.9
Q ss_pred EEEECCeEEEEEee-cCEEEEEEC-CCCC--eEEccCCCCc--------ceeeeEEEECCEEEEEcccCCCCCCCeEEEE
Q psy2979 152 LVVSGRNTIYCLDI-VDIVYVAAS-MHKI--LHSLGSLKFD--------FDVSGIAMLDGFVYAVGGWDGSCRLDSVERY 219 (400)
Q Consensus 152 ~~~~~~~~iyv~~~-~~~~~~yd~-~~~~--w~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~y 219 (400)
-++.++. +|+... ...++.+|. .+++ |+.-...... ....+.+..+++||+... ...+..+
T Consensus 58 P~v~~g~-vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------dg~l~al 130 (571)
T 2ad6_A 58 PLVIGDM-MYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA------NGHLLAL 130 (571)
T ss_dssp CEEETTE-EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT------TSEEEEE
T ss_pred cEEECCE-EEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC------CCEEEEE
Confidence 3556888 999866 678999999 7765 8764432211 112235567899998643 2468999
Q ss_pred eCCCC--ceEEccCCC-Cc-ccccEEEEeCCEEEEEcCccccCCCC-cceEEEEeCCCCc--eeec
Q psy2979 220 DPTKN--EWSYIEPMK-LA-VTSPAVVAHEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQ--WQDL 278 (400)
Q Consensus 220 d~~~~--~W~~~~~l~-~~-~~~~~~~~~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~--W~~~ 278 (400)
|..++ .|+.-..-+ .. ....+-++.++.+|+..+. .... ...++.||+.+.+ |+.-
T Consensus 131 D~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~---~~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 131 DAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSG---AELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp ETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBC---GGGTCCCEEEEEETTTCCEEEEEE
T ss_pred ECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecC---CccCCCCEEEEEECCCCcEEEEEc
Confidence 99887 487532211 11 1122334568998876432 1000 2478999998665 8654
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.094 Score=45.57 Aligned_cols=186 Identities=9% Similarity=0.066 Sum_probs=87.5
Q ss_pred EEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCccccc
Q psy2979 160 IYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSP 239 (400)
Q Consensus 160 iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~ 239 (400)
++.......+..+|....... +.....+-........++..++.|+.+ ..+..||..... .............
T Consensus 117 l~~~~~d~~i~~~d~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~-~~~~~~~~~~i~~ 189 (313)
T 3odt_A 117 VISGSWDKTAKVWKEGSLVYN-LQAHNASVWDAKVVSFSENKFLTASAD-----KTIKLWQNDKVI-KTFSGIHNDVVRH 189 (313)
T ss_dssp EEEEETTSEEEEEETTEEEEE-EECCSSCEEEEEEEETTTTEEEEEETT-----SCEEEEETTEEE-EEECSSCSSCEEE
T ss_pred EEEEeCCCCEEEEcCCcEEEe-cccCCCceeEEEEccCCCCEEEEEECC-----CCEEEEecCceE-EEEeccCcccEEE
Confidence 444455667788882221111 111111111111112156666666655 347788833221 1222111111222
Q ss_pred EEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEEC
Q psy2979 240 AVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHI 318 (400)
Q Consensus 240 ~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~ 318 (400)
....-++. ++.|+. + ..+..||..+.+-...-... ...-.+++.. ++. ++.|+. ...+..||.
T Consensus 190 ~~~~~~~~-~~~~~~---d----g~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~-l~~~~~------dg~v~iwd~ 253 (313)
T 3odt_A 190 LAVVDDGH-FISCSN---D----GLIKLVDMHTGDVLRTYEGH-ESFVYCIKLLPNGD-IVSCGE------DRTVRIWSK 253 (313)
T ss_dssp EEEEETTE-EEEEET---T----SEEEEEETTTCCEEEEEECC-SSCEEEEEECTTSC-EEEEET------TSEEEEECT
T ss_pred EEEcCCCe-EEEccC---C----CeEEEEECCchhhhhhhhcC-CceEEEEEEecCCC-EEEEec------CCEEEEEEC
Confidence 22334667 666666 4 37899998765422211111 1111222233 444 555554 568999999
Q ss_pred CCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCC
Q psy2979 319 AENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHL 377 (400)
Q Consensus 319 ~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~ 377 (400)
.+.+....-..+.. ....+.. +++ ++.|+. + ..|.+||..++++.....+
T Consensus 254 ~~~~~~~~~~~~~~--~i~~~~~~~~~~-~~~~~~-d-----g~i~iw~~~~~~~~~~~~~ 305 (313)
T 3odt_A 254 ENGSLKQVITLPAI--SIWSVDCMSNGD-IIVGSS-D-----NLVRIFSQEKSRWASEDEI 305 (313)
T ss_dssp TTCCEEEEEECSSS--CEEEEEECTTSC-EEEEET-T-----SCEEEEESCGGGCCC----
T ss_pred CCCceeEEEeccCc--eEEEEEEccCCC-EEEEeC-C-----CcEEEEeCCCCceeehhhh
Confidence 88865443222211 1122222 566 455665 2 4689999998877655443
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.17 Score=43.90 Aligned_cols=211 Identities=9% Similarity=-0.003 Sum_probs=113.9
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEee-cCEEEEEECCCCCeEEccCCCCc-c--eeeeEEE-EC
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDI-VDIVYVAASMHKILHSLGSLKFD-F--DVSGIAM-LD 198 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~-~~~~~~yd~~~~~w~~~~~~~~~-r--~~~~~~~-~~ 198 (400)
..+..||+.++ ...+.. +. ....+++.. ++. +|+... ...+..||+.+++...+...... . .-..++. -+
T Consensus 50 ~~i~~~~~~~~-~~~~~~-~~-~~~~~l~~~~dg~-l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~ 125 (296)
T 3e5z_A 50 NRTWAWSDDGQ-LSPEMH-PS-HHQNGHCLNKQGH-LIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPD 125 (296)
T ss_dssp TEEEEEETTSC-EEEEES-SC-SSEEEEEECTTCC-EEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTT
T ss_pred CEEEEEECCCC-eEEEEC-CC-CCcceeeECCCCc-EEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCC
Confidence 47889999887 554432 21 122344443 556 887744 46899999988887765432111 1 1112222 26
Q ss_pred CEEEEE----cccC--------CCCCCCeEEEEeCCCCceEEccC-CCCcccccEEEE-eCCEEEEEcCccccCCCCcce
Q psy2979 199 GFVYAV----GGWD--------GSCRLDSVERYDPTKNEWSYIEP-MKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQ 264 (400)
Q Consensus 199 ~~iyv~----GG~~--------~~~~~~~v~~yd~~~~~W~~~~~-l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~ 264 (400)
+.+|+. |... .......++++|+. ++...+.. +..+ .+++. -++++++.+.. ...
T Consensus 126 G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~---~gi~~s~dg~~lv~~~~-------~~~ 194 (296)
T 3e5z_A 126 GSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKP---NGLAFLPSGNLLVSDTG-------DNA 194 (296)
T ss_dssp SCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSE---EEEEECTTSCEEEEETT-------TTE
T ss_pred CCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCC---ccEEECCCCCEEEEeCC-------CCe
Confidence 788886 4311 01123479999988 55554432 2111 12332 35666655443 347
Q ss_pred EEEEeCC-CCce-e--eccCCCCCceeeeEEE-ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEE
Q psy2979 265 VQRYNPK-VNQW-Q--DLAPMLIPRSGAAICA-LDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIA 339 (400)
Q Consensus 265 v~~yd~~-~~~W-~--~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~ 339 (400)
+++||.. +.+. . .+-..... .-.+++. -+|.||+..+ ..+.+||+.......+. .+.. ...+
T Consensus 195 i~~~~~~~~g~~~~~~~~~~~~~~-~p~~i~~d~~G~l~v~~~--------~~v~~~~~~g~~~~~~~-~~~~---~~~~ 261 (296)
T 3e5z_A 195 THRYCLNARGETEYQGVHFTVEPG-KTDGLRVDAGGLIWASAG--------DGVHVLTPDGDELGRVL-TPQT---TSNL 261 (296)
T ss_dssp EEEEEECSSSCEEEEEEEECCSSS-CCCSEEEBTTSCEEEEET--------TEEEEECTTSCEEEEEE-CSSC---CCEE
T ss_pred EEEEEECCCCcCcCCCeEeeCCCC-CCCeEEECCCCCEEEEcC--------CeEEEECCCCCEEEEEE-CCCC---ceeE
Confidence 8999875 3444 1 11111111 1112333 3778988772 47999999865544443 2222 3334
Q ss_pred EE---C-CEEEEEcCccCCCCCCCeEEEEECCCCcE
Q psy2979 340 VI---D-GKIYVLGGEEGWDGYHDSIECYDVDNDSW 371 (400)
Q Consensus 340 ~~---~-~~lyv~GG~~~~~~~~~~v~~yd~~~~~W 371 (400)
++ + +.||+... +.+++|++++++-
T Consensus 262 ~f~~~d~~~L~v~t~--------~~l~~~~~~~~~~ 289 (296)
T 3e5z_A 262 CFGGPEGRTLYMTVS--------TEFWSIETNVRGL 289 (296)
T ss_dssp EEESTTSCEEEEEET--------TEEEEEECSCCBC
T ss_pred EEECCCCCEEEEEcC--------CeEEEEEcccccc
Confidence 44 2 35777653 3689999988754
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.021 Score=51.58 Aligned_cols=238 Identities=12% Similarity=-0.008 Sum_probs=109.7
Q ss_pred EEEEEeccCCCcccceEEEEEcCCCceEEccCCcccc-eeeeEEEE-CCeEEEEEeecCEEEEEECCCCC-eEEccCCCC
Q psy2979 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAI-SKHGLVVS-GRNTIYCLDIVDIVYVAASMHKI-LHSLGSLKF 187 (400)
Q Consensus 111 ~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~-~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~-w~~~~~~~~ 187 (400)
..++.|+.+ ..+..||..++.|..+..+.... .-.+++.. ++..|+.......+..+|..++. |.....+..
T Consensus 24 ~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~ 98 (377)
T 3dwl_C 24 TEFVTTTAT-----NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLR 98 (377)
T ss_dssp SEEECCCSS-----SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCC
T ss_pred CEEEEecCC-----CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecc
Confidence 355566544 46778888888777665554322 22334443 33313333445678888888776 443332221
Q ss_pred c-ceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCc-eEEccCCCCccc-c-cEEEE-eCCEEEEEcCccccCCCC
Q psy2979 188 D-FDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNE-WSYIEPMKLAVT-S-PAVVA-HEGMLYVTGGAILEDGDG 261 (400)
Q Consensus 188 ~-r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~l~~~~~-~-~~~~~-~~~~iyv~GG~~~~~~~~ 261 (400)
. ..-.+++.. ++..++.|+.+ ..+..||..+++ |.....+..+.. . .+++. -++++++.|+. ++
T Consensus 99 ~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~---d~-- 168 (377)
T 3dwl_C 99 LNRAATFVRWSPNEDKFAVGSGA-----RVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA---DR-- 168 (377)
T ss_dssp CSSCEEEEECCTTSSCCEEEESS-----SCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEES---SS--
T ss_pred cCCceEEEEECCCCCEEEEEecC-----CeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeC---CC--
Confidence 1 111122211 45666667654 357888887764 332322222111 1 12222 25677777777 54
Q ss_pred cceEEEEeCCCCcee----------------eccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeE-
Q psy2979 262 IEQVQRYNPKVNQWQ----------------DLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTW- 323 (400)
Q Consensus 262 ~~~v~~yd~~~~~W~----------------~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W- 323 (400)
.+..||..+.... .+..+.....-.+++.. ++++++.|+. ...+..||..+.+-
T Consensus 169 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~------d~~i~iwd~~~~~~~ 240 (377)
T 3dwl_C 169 --KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGH------DSSVTIAYPSAPEQP 240 (377)
T ss_dssp --CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEET------TTEEC-CEECSTTSC
T ss_pred --EEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeC------CCcEEEEECCCCCCc
Confidence 5788887543321 11122111111122222 6676777765 45777888776542
Q ss_pred -EEccCCcCccCcceEE--EECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCC
Q psy2979 324 -EYKSPMKEKRYRPGIA--VIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLP 378 (400)
Q Consensus 324 -~~~~~~~~~~~~~~~~--~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~ 378 (400)
..+..+.........+ .-++++++.|+. +.+.+|+.....|+....+.
T Consensus 241 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~ 291 (377)
T 3dwl_C 241 PRALITVKLSQLPLRSLLWANESAIVAAGYN-------YSPILLQGNESGWAHTRDLD 291 (377)
T ss_dssp EEECCCEECSSSCEEEEEEEETTEEEEEESS-------SSEEEECCCC---CCSBCCC
T ss_pred ceeeEeecCCCCceEEEEEcCCCCEEEEEcC-------CcEEEEEeCCCceEEEeeec
Confidence 1122222211111222 237887777754 34568888877787776554
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.037 Score=55.60 Aligned_cols=179 Identities=15% Similarity=0.121 Sum_probs=94.7
Q ss_pred CEEEEEECCCCCeEEccCCCCccee-eeEEEE-C--CEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEE
Q psy2979 167 DIVYVAASMHKILHSLGSLKFDFDV-SGIAML-D--GFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVV 242 (400)
Q Consensus 167 ~~~~~yd~~~~~w~~~~~~~~~r~~-~~~~~~-~--~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~ 242 (400)
..+..||...+++.....+...... .+++.. + +..++.|+.+ ..+..||..+++|..+..+.........+
T Consensus 31 g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D-----g~I~vwd~~~~~~~~~~~~~~h~~~V~~v 105 (753)
T 3jro_A 31 KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-----GKVLIWKEENGRWSQIAVHAVHSASVNSV 105 (753)
T ss_dssp TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT-----SCEEEEEEETTEEEEEEEECCCSSCEEEE
T ss_pred CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC-----CeEEEEECCCCcccccccccCCCCCeEEE
Confidence 4566666665556555444322222 222222 2 5677777765 35888999998877665444322222333
Q ss_pred Ee--C--CEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCC-CCceeeeEEEE--------------CCeEEEEcCc
Q psy2979 243 AH--E--GMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPML-IPRSGAAICAL--------------DSCIYVLGGW 303 (400)
Q Consensus 243 ~~--~--~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~r~~~~~~~~--------------~~~iyv~GG~ 303 (400)
.. + +.++++|+. ++ .+..||..+..-.....+. .+....++... ++..++.|+.
T Consensus 106 ~~sp~~~~~~l~sgs~---dg----~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~ 178 (753)
T 3jro_A 106 QWAPHEYGPLLLVASS---DG----KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 178 (753)
T ss_dssp EECCGGGCSEEEEEET---TS----EEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEET
T ss_pred EECCCCCCCEEEEEeC---CC----cEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEEC
Confidence 32 3 677788877 44 7888988765221111000 11111111111 3567777766
Q ss_pred CCCCCCCCeEEEEECCCC--eEEEccCCcCccCcceEEEE--C---CEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 304 HASTENTNRVECYHIAEN--TWEYKSPMKEKRYRPGIAVI--D---GKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 304 ~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~--~---~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
...+..||..++ .+.....+.........+.+ + +++++.||. + ..|.+||+.++
T Consensus 179 ------dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~-D-----g~I~iwd~~~~ 239 (753)
T 3jro_A 179 ------DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ-D-----RTCIIWTQDNE 239 (753)
T ss_dssp ------TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES-S-----SCEEEEEESSS
T ss_pred ------CCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec-C-----CEEEEecCCCC
Confidence 345777776544 44444333322222233333 4 788888886 3 35788888775
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.26 Score=45.75 Aligned_cols=240 Identities=11% Similarity=0.037 Sum_probs=117.6
Q ss_pred cEEEEEeccCCCcccceEEEEEcC--CCceEE-ccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEE--cc
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVK--TKVWKT-LSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHS--LG 183 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~--~~~w~~-~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~--~~ 183 (400)
..+++.|+.+ ..+.+||.. +++... +.....+..-.+++.. ++..|++......++.++..+..... ..
T Consensus 115 ~~l~~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~ 189 (450)
T 2vdu_B 115 SRLIACADSD-----KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQE 189 (450)
T ss_dssp SEEEEEEGGG-----TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCC
T ss_pred CEEEEEECCC-----CeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccce
Confidence 4555667654 467888877 544322 1110111111233333 33314443555678888876654321 11
Q ss_pred CCCC-cceeeeE-EEEC---CEEEEEcccCCCCCCCeEEEEeCCCCceEEc--cCCCCcccccEEEEeCCEEEEEcCccc
Q psy2979 184 SLKF-DFDVSGI-AMLD---GFVYAVGGWDGSCRLDSVERYDPTKNEWSYI--EPMKLAVTSPAVVAHEGMLYVTGGAIL 256 (400)
Q Consensus 184 ~~~~-~r~~~~~-~~~~---~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~--~~l~~~~~~~~~~~~~~~iyv~GG~~~ 256 (400)
.+.. ...-.++ ..-+ +.+++.|+.+ ..+..||..+++.... ........ ..+.. ++..++.|+.
T Consensus 190 ~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~h~~~v~-~~~~s-d~~~l~s~~~-- 260 (450)
T 2vdu_B 190 PILGHVSMLTDVHLIKDSDGHQFIITSDRD-----EHIKISHYPQCFIVDKWLFGHKHFVS-SICCG-KDYLLLSAGG-- 260 (450)
T ss_dssp CSEECSSCEEEEEEEECTTSCEEEEEEETT-----SCEEEEEESCTTCEEEECCCCSSCEE-EEEEC-STTEEEEEES--
T ss_pred eeecccCceEEEEEcCCCCCCcEEEEEcCC-----CcEEEEECCCCceeeeeecCCCCceE-EEEEC-CCCEEEEEeC--
Confidence 1111 1111122 2235 7777778765 4588888877654322 11111111 11222 7777778876
Q ss_pred cCCCCcceEEEEeCCCCceeeccCC------------------------CCCceeeeEEEE-CCeEEEEcC-cCCCCCCC
Q psy2979 257 EDGDGIEQVQRYNPKVNQWQDLAPM------------------------LIPRSGAAICAL-DSCIYVLGG-WHASTENT 310 (400)
Q Consensus 257 ~~~~~~~~v~~yd~~~~~W~~~~~~------------------------~~~r~~~~~~~~-~~~iyv~GG-~~~~~~~~ 310 (400)
++ .+..||..+.+....-.. ........++.. ++..+++++ . .
T Consensus 261 -d~----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~------d 329 (450)
T 2vdu_B 261 -DD----KIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA------T 329 (450)
T ss_dssp -SS----EEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETT------C
T ss_pred -CC----eEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECC------C
Confidence 43 789999887663222110 001111122222 344444443 3 4
Q ss_pred CeEEEEEC--C-CCeEEEccCCcCccCcceEEEECCEEEEEcCccCCC---CCCCeEEEEECCCCcEEEe
Q psy2979 311 NRVECYHI--A-ENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWD---GYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 311 ~~v~~yd~--~-~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~---~~~~~v~~yd~~~~~W~~~ 374 (400)
..+..||. . .+++..+..++.......++...+.+++..+..... ...-.++.++.++++|+..
T Consensus 330 ~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~ 399 (450)
T 2vdu_B 330 KCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSFVVN 399 (450)
T ss_dssp SEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTTEEEEC
T ss_pred CeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCCeEEEc
Confidence 57888887 3 345555554443322233444467777766541111 1223777888888888643
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=96.90 E-value=0.25 Score=45.33 Aligned_cols=212 Identities=12% Similarity=0.080 Sum_probs=118.9
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEE--CCeEEEEE-eecCEEEEEECCCC----CeEEccCCCCcceeeeEEE-
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVS--GRNTIYCL-DIVDIVYVAASMHK----ILHSLGSLKFDFDVSGIAM- 196 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~--~~~~iyv~-~~~~~~~~yd~~~~----~w~~~~~~~~~r~~~~~~~- 196 (400)
..+...++....+..+. +......+++.. ++. ||+. .....++.+++... ....+..-. ...-.++++
T Consensus 92 ~~I~~i~l~~~~~~~~~--~~~~~~~~l~~d~~~~~-lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~-~~~p~glavD 167 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTSLI--PNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-IQAPDGLAVD 167 (400)
T ss_dssp TEEEEECTTSCSCEEEE--CSCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC------CCCEEEECSS-CSCEEEEEEE
T ss_pred ceeEEEccCCcceeEec--cccCcceEEeeeeccCc-eEEEecCCCeEEEEEcccCCCCCcceEEEeCC-CCCcccEEEE
Confidence 46777787777666543 222333455554 466 9988 34567888888652 222222111 111223333
Q ss_pred -ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEcc--CCCCcccccEEEE--eCCEEEEEcCccccCCCCcceEEEEeCC
Q psy2979 197 -LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIE--PMKLAVTSPAVVA--HEGMLYVTGGAILEDGDGIEQVQRYNPK 271 (400)
Q Consensus 197 -~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~--~l~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~ 271 (400)
.++.||+.-.. ...++++++....-..+. .+..++ ++++ .++.||+.--. . ...++++++.
T Consensus 168 ~~~~~lY~~d~~-----~~~I~~~~~~g~~~~~l~~~~~~~P~---~iavdp~~g~ly~td~~---~---~~~I~~~~~d 233 (400)
T 3p5b_L 168 WIHSNIYWTDSV-----LGTVSVADTKGVKRKTLFRENGSKPR---AIVVDPVHGFMYWTDWG---T---PAKIKKGGLN 233 (400)
T ss_dssp TTTTEEEEEETT-----TTEEEEECTTTCSEEEEEECSSCCEE---EEEEETTTTEEEEEECS---S---SCCEEEEETT
T ss_pred ecCCceEEEECC-----CCeEEEEeCCCCceEEEEeCCCCCcc---eEEEecccCeEEEEeCC---C---CCEEEEEeCC
Confidence 37899998432 357889998876554442 222222 3444 37899998521 1 2468999887
Q ss_pred CCceeecc--CCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCc-CccCcceEEEECCEEE
Q psy2979 272 VNQWQDLA--PMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMK-EKRYRPGIAVIDGKIY 346 (400)
Q Consensus 272 ~~~W~~~~--~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~~~~~~~~~~~~~ly 346 (400)
...-+.+. .+..| .+++.- ++.||+.... ...|+++|+....-..+...+ ......++++.++.||
T Consensus 234 G~~~~~~~~~~l~~P---~glavd~~~~~lY~aD~~------~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~ly 304 (400)
T 3p5b_L 234 GVDIYSLVTENIQWP---NGITLDLLSGRLYWVDSK------LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVF 304 (400)
T ss_dssp SCSCEEEECSSCSCE---EEEEEETTTTEEEEEETT------TTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEE
T ss_pred CCccEEEEECCCCce---EEEEEEeCCCEEEEEECC------CCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEE
Confidence 65433332 22222 233333 7899999754 578999998765433332211 1123346777899999
Q ss_pred EEcCccCCCCCCCeEEEEECCCC
Q psy2979 347 VLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 347 v~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
+.--. ...|+++|..++
T Consensus 305 wtd~~------~~~V~~~~~~~G 321 (400)
T 3p5b_L 305 WTDII------NEAIFSANRLTG 321 (400)
T ss_dssp EEESS------SCSEEEEESSSC
T ss_pred EecCC------CCeEEEEEcCCC
Confidence 98632 245777775443
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.052 Score=47.90 Aligned_cols=239 Identities=14% Similarity=0.146 Sum_probs=114.3
Q ss_pred EEEEEeccCCCcccceEEEEEcCCCceEEccCCccc-ceeeeEEEEC---CeEEEEEeecCEEEEEECCCCCeEEccCCC
Q psy2979 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFA-ISKHGLVVSG---RNTIYCLDIVDIVYVAASMHKILHSLGSLK 186 (400)
Q Consensus 111 ~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~-~~~~~~~~~~---~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~ 186 (400)
..++.|+.+ ..+.++|..+++...+..+... ..-.+++... +..|.....-..+..+|..+++|.....+.
T Consensus 26 ~~lasgs~D-----~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~ 100 (316)
T 3bg1_A 26 TRLATCSSD-----RSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHA 100 (316)
T ss_dssp CEEEEEETT-----TEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEEC
T ss_pred CEEEEEeCC-----CeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEcc
Confidence 455666655 4677888776543222222211 1112233321 331333355567888898877665443322
Q ss_pred Ccce-eeeEEEE-C--CEEEEEcccCCCCCCCeEEEEeCCCC-ceEEccCCCCcccccEEEEe-----------------
Q psy2979 187 FDFD-VSGIAML-D--GFVYAVGGWDGSCRLDSVERYDPTKN-EWSYIEPMKLAVTSPAVVAH----------------- 244 (400)
Q Consensus 187 ~~r~-~~~~~~~-~--~~iyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~~l~~~~~~~~~~~~----------------- 244 (400)
.... -.+++.. + +.+++.|+.++ .+..||..++ .|.....+.........+..
T Consensus 101 ~h~~~V~~v~~~p~~~g~~lasgs~D~-----~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~ 175 (316)
T 3bg1_A 101 GHDSSVNSVCWAPHDYGLILACGSSDG-----AISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQK 175 (316)
T ss_dssp CCSSCCCEEEECCTTTCSCEEEECSSS-----CEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCC
T ss_pred CCCCceEEEEECCCCCCcEEEEEcCCC-----CEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccC
Confidence 1111 1122222 2 45667777553 4677777665 46443222111000000000
Q ss_pred --CCEEEEEcCccccCCCCcceEEEEeCCC-CceeeccCCCCCceeeeEEEE--C----CeEEEEcCcCCCCCCCCeEEE
Q psy2979 245 --EGMLYVTGGAILEDGDGIEQVQRYNPKV-NQWQDLAPMLIPRSGAAICAL--D----SCIYVLGGWHASTENTNRVEC 315 (400)
Q Consensus 245 --~~~iyv~GG~~~~~~~~~~~v~~yd~~~-~~W~~~~~~~~~r~~~~~~~~--~----~~iyv~GG~~~~~~~~~~v~~ 315 (400)
.++.++.||. |+ .+..||..+ ..|..+..+.........+.. + +.+++.|+. ..++..
T Consensus 176 ~~~~~~l~sgs~---D~----~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~------D~~v~i 242 (316)
T 3bg1_A 176 PNYIKRFASGGC---DN----LIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQ------DGRVFI 242 (316)
T ss_dssp CCCCCBEECCBT---TS----BCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEET------TCEEEE
T ss_pred ccccceEEEecC---CC----eEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcC------CCeEEE
Confidence 1356677776 54 566677653 457665544322221222222 2 256777765 457888
Q ss_pred EECCC---CeEEE--ccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECC-CCcEEEecCCCCCC
Q psy2979 316 YHIAE---NTWEY--KSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVD-NDSWEIMSHLPSAR 381 (400)
Q Consensus 316 yd~~~---~~W~~--~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~-~~~W~~~~~~~~~r 381 (400)
+|..+ +.|.. +... ......+.. ++++++.||. + ..|.+|+.. .+.|..+..+..+-
T Consensus 243 w~~~~~~~~~~~~~~~~~~---~~~v~~v~~sp~g~~las~~~-D-----~~v~lw~~~~~g~~~~~~~~~~~~ 307 (316)
T 3bg1_A 243 WTCDDASSNTWSPKLLHKF---NDVVWHVSWSITANILAVSGG-D-----NKVTLWKESVDGQWVCISDVNKGQ 307 (316)
T ss_dssp EECSSTTCCCCBCCEEEEC---SSCEEEEEECTTTCCEEEEES-S-----SCEEEEEECTTSCEEEEEECC---
T ss_pred EEccCccccchhhhhhhcC---CCcEEEEEEcCCCCEEEEEcC-C-----CeEEEEEECCCCcEEEeeeccCCC
Confidence 88765 23321 1111 011112223 5777777776 3 356777764 56899888777654
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.21 Score=49.37 Aligned_cols=191 Identities=10% Similarity=-0.017 Sum_probs=99.7
Q ss_pred CEEEEEECCCCCeEEccCCCCccee-eeEEE-ECCEEEEEcccCCCCCCCeEEEEeCCCC-ceEEccCCCCcc----ccc
Q psy2979 167 DIVYVAASMHKILHSLGSLKFDFDV-SGIAM-LDGFVYAVGGWDGSCRLDSVERYDPTKN-EWSYIEPMKLAV----TSP 239 (400)
Q Consensus 167 ~~~~~yd~~~~~w~~~~~~~~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~~l~~~~----~~~ 239 (400)
..++.+|..+++-..+......... ..++. -+++..+++..+.......+..+|+.++ .+..+..-.... ...
T Consensus 235 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 314 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHP 314 (706)
T ss_dssp EEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSC
T ss_pred eEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCC
Confidence 5688899888775554432111112 22222 2555444444443334457899999988 665553211111 011
Q ss_pred EEEEe--CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECC-eEEEEcCcCCCCCCCCeEEEE
Q psy2979 240 AVVAH--EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDS-CIYVLGGWHASTENTNRVECY 316 (400)
Q Consensus 240 ~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~y 316 (400)
....- ++++++.+.. ++ ...++.+|........+..-...........-++ .||+.+..+.. . ...++.+
T Consensus 315 ~~~sp~~dg~~l~~~~~---~g--~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~-~-~~~l~~~ 387 (706)
T 2z3z_A 315 LTFLPGSNNQFIWQSRR---DG--WNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASP-L-ERHFYCI 387 (706)
T ss_dssp CEECTTCSSEEEEEECT---TS--SCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCT-T-CBEEEEE
T ss_pred ceeecCCCCEEEEEEcc---CC--ccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCC-c-eEEEEEE
Confidence 22333 7776666654 43 3578899977776776643222221111112244 56666544221 1 3589999
Q ss_pred ECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 317 HIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 317 d~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
|..+++...+.... ..+ .+.+ +++.+++... + ......++.+|..+++
T Consensus 388 d~~~~~~~~l~~~~---~~~-~~~~spdg~~l~~~~~-~-~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 388 DIKGGKTKDLTPES---GMH-RTQLSPDGSAIIDIFQ-S-PTVPRKVTVTNIGKGS 437 (706)
T ss_dssp ETTCCCCEESCCSS---SEE-EEEECTTSSEEEEEEE-C-SSCSCEEEEEESSSCE
T ss_pred EcCCCCceeccCCC---ceE-EEEECCCCCEEEEEec-C-CCCCcEEEEEECCCCe
Confidence 99888766665211 112 2233 5665555533 2 1223578999988876
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.27 Score=45.31 Aligned_cols=199 Identities=13% Similarity=0.086 Sum_probs=109.7
Q ss_pred eeEEEE-CCeEEEEEee-cCEEEEEECCCCCeEEccCCC-CcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCc-
Q psy2979 150 HGLVVS-GRNTIYCLDI-VDIVYVAASMHKILHSLGSLK-FDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNE- 225 (400)
Q Consensus 150 ~~~~~~-~~~~iyv~~~-~~~~~~yd~~~~~w~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~- 225 (400)
+++++. ++. ||+... ...+..+|+.++.-..+.... .++ .+...-++.+|+...... ..++.+|+.++.
T Consensus 134 ~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~--ia~~~~g~~l~~~d~~~~----~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 134 WGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK--PAVTKDKQRVYSIGWEGT----HTVYVYMKASGWA 206 (409)
T ss_dssp EEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEEEETCCBCB--CEECTTSSEEEEEBSSTT----CEEEEEEGGGTTC
T ss_pred eEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEeeccCCCCc--eeEecCCCcEEEEecCCC----ceEEEEEcCCCce
Confidence 445554 556 998843 468999999987765544321 111 111112446777644221 278999987653
Q ss_pred eEEccCCC--CcccccEEEEe--CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccC---CCCCcee-e-eEEEE--C
Q psy2979 226 WSYIEPMK--LAVTSPAVVAH--EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAP---MLIPRSG-A-AICAL--D 294 (400)
Q Consensus 226 W~~~~~l~--~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~---~~~~r~~-~-~~~~~--~ 294 (400)
...+..++ ....-++++.. ++.||+.... ..+++||+.+.....+.. ....... . .++.. +
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~--------~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~ 278 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSN--------KNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVD 278 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTT--------CEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTT
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECC--------CcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCC
Confidence 22331111 11122233332 6899995332 379999998776555421 1111112 1 44444 5
Q ss_pred CeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCC-c----------CccCcceEEEE--CCEEEEEcC-ccCCCCCCCe
Q psy2979 295 SCIYVLGGWHASTENTNRVECYHIAENTWEYKSPM-K----------EKRYRPGIAVI--DGKIYVLGG-EEGWDGYHDS 360 (400)
Q Consensus 295 ~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~-~----------~~~~~~~~~~~--~~~lyv~GG-~~~~~~~~~~ 360 (400)
+.||+.... ...+++|++....-...... . .....+...++ +|+||+... . ...
T Consensus 279 g~lyv~d~~------~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~------~~~ 346 (409)
T 3hrp_A 279 SNFYMSDQN------LSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK------GYC 346 (409)
T ss_dssp TEEEEEETT------TTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT------TCE
T ss_pred CEEEEEeCC------CCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC------CCE
Confidence 899998754 56899999876532222221 0 00122334444 578999864 3 357
Q ss_pred EEEEECCCCcEEEec
Q psy2979 361 IECYDVDNDSWEIMS 375 (400)
Q Consensus 361 v~~yd~~~~~W~~~~ 375 (400)
|.++|+.++....+.
T Consensus 347 I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 347 LRKLDILDGYVSTVA 361 (409)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred EEEEECCCCEEEEEe
Confidence 999997777666553
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.48 Score=47.60 Aligned_cols=208 Identities=13% Similarity=0.098 Sum_probs=113.5
Q ss_pred EEEEEcCCCceEEccCCcccceeeeEEEE--CCeEEEEE-eecCEEEEEECCCC----CeEEccC--CCCcceeeeEEE-
Q psy2979 127 VEGFCVKTKVWKTLSCLPFAISKHGLVVS--GRNTIYCL-DIVDIVYVAASMHK----ILHSLGS--LKFDFDVSGIAM- 196 (400)
Q Consensus 127 ~~~yd~~~~~w~~~~~~~~~~~~~~~~~~--~~~~iyv~-~~~~~~~~yd~~~~----~w~~~~~--~~~~r~~~~~~~- 196 (400)
+..++.....+..+.. ......++++. ++. ||+. ...+.++.+++... ....+.. +..| .++++
T Consensus 406 Ir~i~l~~~~~~~l~~--~~~~~~gl~~d~~~~~-lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P---~GLAvD 479 (791)
T 3m0c_C 406 VRKMTLDRSEYTSLIP--NLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP---DGLAVD 479 (791)
T ss_dssp EEEECTTSCCCEEEEC--SCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSCSCC---CEEEEE
T ss_pred eeEeeccCCcceeeec--CCCceEEEeecccCCe-eEEeeccceeEEEEeccCCCCCcceeEEEecCCCCc---ceeeee
Confidence 4445555444444321 12223445543 456 8888 33457888887642 2222221 2122 22333
Q ss_pred -ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEcc--CCCCcccccEEEE--eCCEEEEEcCccccCCCCcceEEEEeCC
Q psy2979 197 -LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIE--PMKLAVTSPAVVA--HEGMLYVTGGAILEDGDGIEQVQRYNPK 271 (400)
Q Consensus 197 -~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~--~l~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~ 271 (400)
.++.||+.-. ....|+++++....-..+. .+..++ ++++ .++.||+.--. . ...|+++++.
T Consensus 480 ~~~~~LY~tD~-----~~~~I~v~~ldG~~~~~l~~~~l~~P~---gIaVDp~~g~LYwtD~g---~---~~~I~~~~~d 545 (791)
T 3m0c_C 480 WIHSNIYWTDS-----VLGTVSVADTKGVKRKTLFRENGSKPR---AIVVDPVHGFMYWTDWG---T---PAKIKKGGLN 545 (791)
T ss_dssp TTTTEEEEEET-----TTTEEEEEETTSSSEEEEEECTTCCEE---EEEEETTTTEEEEEECS---S---SCEEEEEETT
T ss_pred ecCCcEEEEec-----CCCeEEEEeCCCCeEEEEEeCCCCCcc---eEEEecCCCCEEEecCC---C---CCeEEEEecC
Confidence 3679999743 2357999998876554442 233222 3444 36899998521 1 2479999987
Q ss_pred CCceeecc--CCCCCceeeeEEE--ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCC-cCccCcceEEEECCEEE
Q psy2979 272 VNQWQDLA--PMLIPRSGAAICA--LDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPM-KEKRYRPGIAVIDGKIY 346 (400)
Q Consensus 272 ~~~W~~~~--~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~-~~~~~~~~~~~~~~~ly 346 (400)
...-..+. .+..| .++++ .++.||+.... ...|+++++....-..+... ..-....++++.+++||
T Consensus 546 G~~~~~lv~~~l~~P---~GLavD~~~~~LYwaD~~------~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lY 616 (791)
T 3m0c_C 546 GVDIYSLVTENIQWP---NGITLDLLSGRLYWVDSK------LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVF 616 (791)
T ss_dssp SCCEEEEECSSCSCE---EEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEE
T ss_pred CCceEEEEeCCCCCc---eEEEEecCCCeEEEEeCC------CCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEE
Confidence 65544432 22222 23333 37899999754 57899999875543333221 11123346677899999
Q ss_pred EEcCccCCCCCCCeEEEEECCCC
Q psy2979 347 VLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 347 v~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
+.-.. ...|+++|..++
T Consensus 617 wtD~~------~~~I~~~dk~tG 633 (791)
T 3m0c_C 617 WTDII------NEAIFSANRLTG 633 (791)
T ss_dssp EEETT------TTEEEEEETTTC
T ss_pred EEECC------CCEEEEEeCCCC
Confidence 98643 356777775444
|
| >1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.15 Score=41.88 Aligned_cols=145 Identities=14% Similarity=0.152 Sum_probs=83.8
Q ss_pred eEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEE--c----cCCCCcccccEEEEe--CCEEEEEcCccccCCCCcce
Q psy2979 193 GIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSY--I----EPMKLAVTSPAVVAH--EGMLYVTGGAILEDGDGIEQ 264 (400)
Q Consensus 193 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~--~----~~l~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 264 (400)
+++..++.+|++=| ..+++++.....+.. + +.||.. .. ++... ++++|++-|. .
T Consensus 28 Ai~~~~g~~y~Fkg-------~~~wr~~~~~~~~~p~~I~~~wp~Lp~~-iD-Aa~~~~~~~~iyfFkG~---------~ 89 (207)
T 1pex_A 28 AITSLRGETMIFKD-------RFFWRLHPQQVDAELFLTKSFWPELPNR-ID-AAYEHPSHDLIFIFRGR---------K 89 (207)
T ss_dssp EEEEETTEEEEEET-------TEEEEECSSSSCCEEEEHHHHCTTSCSS-CC-EEEEETTTTEEEEEETT---------E
T ss_pred EEEeCCCcEEEEEC-------CEEEEEeCCCcCCCceehhHhccCCCCC-cc-EEEEeccCCcEEEEccC---------E
Confidence 45557999999976 457777765443321 1 345532 22 23322 6999999887 7
Q ss_pred EEEEeCCCCce---eeccCCCCCc---eeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccC------Cc
Q psy2979 265 VQRYNPKVNQW---QDLAPMLIPR---SGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSP------MK 330 (400)
Q Consensus 265 v~~yd~~~~~W---~~~~~~~~~r---~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~------~~ 330 (400)
+|+|+..+..- ..+..+..|. .--++... ++++|++-|. ..|+||..+++-..--+ .+
T Consensus 90 ~w~~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG~--------~ywr~d~~~~~~d~gyPr~i~~~~~ 161 (207)
T 1pex_A 90 FWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGN--------QVWRYDDTNHIMDKDYPRLIEEDFP 161 (207)
T ss_dssp EEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEETT--------EEEEEETTTTEECSSCCCBHHHHST
T ss_pred EEEEeCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeCC--------EEEEEeCcCccccCCCCccHHHcCC
Confidence 89997532211 1222221221 12223332 4899999874 79999987754221000 11
Q ss_pred -CccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcE
Q psy2979 331 -EKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSW 371 (400)
Q Consensus 331 -~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W 371 (400)
.+..--++...+|++|++-|. ..|+||+.+++=
T Consensus 162 Gip~~iDaAf~~~g~~YfFkg~--------~y~rf~~~~~~v 195 (207)
T 1pex_A 162 GIGDKVDAVYEKNGYIYFFNGP--------IQFEYSIWSNRI 195 (207)
T ss_dssp TSCSCCSEEEEETTEEEEEETT--------EEEEEETTTTEE
T ss_pred CCCCCccEEEEcCCcEEEEECC--------EEEEEeCCccEE
Confidence 112223344569999999885 689999987653
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.24 Score=43.69 Aligned_cols=227 Identities=11% Similarity=0.116 Sum_probs=107.2
Q ss_pred EEEEeccCCCcccceEEEEEcCCCc----eEEccCCcccceeeeEEEE-CCe-EEEEEeecCEEEEEEC-CCCCeEEccC
Q psy2979 112 IIAVGGEDDKVVLRSVEGFCVKTKV----WKTLSCLPFAISKHGLVVS-GRN-TIYCLDIVDIVYVAAS-MHKILHSLGS 184 (400)
Q Consensus 112 i~~~gg~~~~~~~~~~~~yd~~~~~----w~~~~~~~~~~~~~~~~~~-~~~-~iyv~~~~~~~~~yd~-~~~~w~~~~~ 184 (400)
.++.|+.+ ..+.+||..+++ ...+. .....-.+++.. ++. .+++......+..||. .+++...+..
T Consensus 25 ~l~~~~~d-----~~v~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 97 (342)
T 1yfq_A 25 LLLITSWD-----GSLTVYKFDIQAKNVDLLQSL--RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTN 97 (342)
T ss_dssp EEEEEETT-----SEEEEEEEETTTTEEEEEEEE--ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBS
T ss_pred EEEEEcCC-----CeEEEEEeCCCCccccceeee--ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccc
Confidence 44555543 467778776655 22222 111122333433 222 2555566678899998 8777655544
Q ss_pred CCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCc-------eEEccCCCCcccccEEEEeCCEEEEEcCcccc
Q psy2979 185 LKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNE-------WSYIEPMKLAVTSPAVVAHEGMLYVTGGAILE 257 (400)
Q Consensus 185 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~-------W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~ 257 (400)
......-.+++...+..++.|+.+ ..+..||+.+.. .+.+..+.....-.+++...+. +++|+.
T Consensus 98 ~~~~~~v~~l~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-l~~~~~--- 168 (342)
T 1yfq_A 98 NEANLGICRICKYGDDKLIAASWD-----GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR-LIVGMN--- 168 (342)
T ss_dssp CCCCSCEEEEEEETTTEEEEEETT-----SEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE-EEEEES---
T ss_pred cCCCCceEEEEeCCCCEEEEEcCC-----CeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc-EEEEeC---
Confidence 111111222222224555556654 457778766400 1122223322222233444555 555555
Q ss_pred CCCCcceEEEEeCCC-Cc--eeeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCC--------eEE
Q psy2979 258 DGDGIEQVQRYNPKV-NQ--WQDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAEN--------TWE 324 (400)
Q Consensus 258 ~~~~~~~v~~yd~~~-~~--W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~--------~W~ 324 (400)
+ ..+..||..+ .. ..... .+......++... ++..++.|+. ...+..||.... ...
T Consensus 169 d----~~i~i~d~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~l~~~~~------dg~i~i~~~~~~~~~~~~~~~~~ 237 (342)
T 1yfq_A 169 N----SQVQWFRLPLCEDDNGTIEE-SGLKYQIRDVALLPKEQEGYACSSI------DGRVAVEFFDDQGDDYNSSKRFA 237 (342)
T ss_dssp T----TEEEEEESSCCTTCCCEEEE-CSCSSCEEEEEECSGGGCEEEEEET------TSEEEEEECCTTCCSTTCTTCEE
T ss_pred C----CeEEEEECCccccccceeee-cCCCCceeEEEECCCCCCEEEEEec------CCcEEEEEEcCCCccccccccee
Confidence 3 3799999877 32 22111 1111112222333 4677777765 335555554332 222
Q ss_pred EccCCc--C--c-cCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcE
Q psy2979 325 YKSPMK--E--K-RYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSW 371 (400)
Q Consensus 325 ~~~~~~--~--~-~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W 371 (400)
.-.... . . ......+.+ ++++++.|+. + ..|.+||..+.+-
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d-----g~i~vwd~~~~~~ 285 (342)
T 1yfq_A 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS-D-----GIISCWNLQTRKK 285 (342)
T ss_dssp EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET-T-----SCEEEEETTTTEE
T ss_pred eecccccccccccceeEEEEEEcCCCCEEEEecC-C-----ceEEEEcCccHhH
Confidence 111110 0 0 011223333 5676677765 2 3689999987653
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.12 Score=46.75 Aligned_cols=185 Identities=11% Similarity=0.037 Sum_probs=95.3
Q ss_pred EEEEEeccCCCcccceEEEEEcCCCceEEccCC-cccceeeeEEEEC-CeEEEEE-eecCEEEEEECCCCCeEEccCCCC
Q psy2979 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCL-PFAISKHGLVVSG-RNTIYCL-DIVDIVYVAASMHKILHSLGSLKF 187 (400)
Q Consensus 111 ~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~-~~~~~~~~~~~~~-~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~ 187 (400)
.+++.|+.+ ..+.+||..+++....... .....-.+++... +..+++. .....+..+|..+.....+.....
T Consensus 87 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 161 (383)
T 3ei3_B 87 TTVAVGSKG-----GDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDS 161 (383)
T ss_dssp TEEEEEEBT-----SCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCC
T ss_pred CEEEEEcCC-----CeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCC
Confidence 455666554 4688899888776544332 1222233444444 2213333 555678889988765554443221
Q ss_pred c-ceeeeEEE-ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE-eCCE-EEEEcCccccCCCCcc
Q psy2979 188 D-FDVSGIAM-LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA-HEGM-LYVTGGAILEDGDGIE 263 (400)
Q Consensus 188 ~-r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~~~~-iyv~GG~~~~~~~~~~ 263 (400)
. ..-.+++. -++..++.|+.+ ..+..||.....-..+....... .+++. -++. +++.|+. ++
T Consensus 162 ~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~h~~~v--~~~~~~~~~~~~l~s~~~---d~---- 227 (383)
T 3ei3_B 162 WDYWYCCVDVSVSRQMLATGDST-----GRLLLLGLDGHEIFKEKLHKAKV--THAEFNPRCDWLMATSSV---DA---- 227 (383)
T ss_dssp SSCCEEEEEEETTTTEEEEEETT-----SEEEEEETTSCEEEEEECSSSCE--EEEEECSSCTTEEEEEET---TS----
T ss_pred CCCCeEEEEECCCCCEEEEECCC-----CCEEEEECCCCEEEEeccCCCcE--EEEEECCCCCCEEEEEeC---CC----
Confidence 1 11122222 255666777655 46888998544333332211111 12222 2344 7777776 43
Q ss_pred eEEEEeCCC----CceeeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCe
Q psy2979 264 QVQRYNPKV----NQWQDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENT 322 (400)
Q Consensus 264 ~v~~yd~~~----~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 322 (400)
.+..||..+ ......-. ....-.+++.. ++..++.|+. ...+..||..+.+
T Consensus 228 ~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~l~~~~~------d~~i~iwd~~~~~ 284 (383)
T 3ei3_B 228 TVKLWDLRNIKDKNSYIAEMP--HEKPVNAAYFNPTDSTKLLTTDQ------RNEIRVYSSYDWS 284 (383)
T ss_dssp EEEEEEGGGCCSTTCEEEEEE--CSSCEEEEEECTTTSCEEEEEES------SSEEEEEETTBTT
T ss_pred EEEEEeCCCCCcccceEEEec--CCCceEEEEEcCCCCCEEEEEcC------CCcEEEEECCCCc
Confidence 788898876 22222111 11111222222 5677777765 4578889887543
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=96.79 E-value=0.046 Score=49.03 Aligned_cols=183 Identities=10% Similarity=0.011 Sum_probs=92.1
Q ss_pred eecCEEEEEECCCCCeEEccCCCCcc-eeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEE
Q psy2979 164 DIVDIVYVAASMHKILHSLGSLKFDF-DVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAV 241 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~~~~r-~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~ 241 (400)
.....+..||..++++..+..+.... .-.+++.. ++..++.|+.+ ..+..||..++++.....+.........
T Consensus 27 ~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~v~~ 101 (372)
T 1k8k_C 27 PNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD-----RNAYVWTLKGRTWKPTLVILRINRAARC 101 (372)
T ss_dssp CSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT-----SCEEEEEEETTEEEEEEECCCCSSCEEE
T ss_pred eCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCC-----CeEEEEECCCCeeeeeEEeecCCCceeE
Confidence 34466778888777665554443221 12222222 56666677654 3588899888877654332222222222
Q ss_pred EE--eCCEEEEEcCccccCCCCcceEEEEeCCCCc-eeeccCCCC--CceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEE
Q psy2979 242 VA--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ-WQDLAPMLI--PRSGAAICAL-DSCIYVLGGWHASTENTNRVEC 315 (400)
Q Consensus 242 ~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~--~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~ 315 (400)
.. -++..+++|+. ++ .+..||..+.. |........ ...-.++... ++..++.|+. ...+..
T Consensus 102 ~~~~~~~~~l~~~~~---d~----~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~~ 168 (372)
T 1k8k_C 102 VRWAPNEKKFAVGSG---SR----VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC------DFKCRI 168 (372)
T ss_dssp EEECTTSSEEEEEET---TS----SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET------TSCEEE
T ss_pred EEECCCCCEEEEEeC---CC----EEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC------CCCEEE
Confidence 22 25667777776 43 46666665543 332222211 1111222222 6677777765 456888
Q ss_pred EECCCC----------------eEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 316 YHIAEN----------------TWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 316 yd~~~~----------------~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
||.... .-..+..+.........+.+ +++.++.|+. + ..|.+||..+.+
T Consensus 169 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----~~i~i~d~~~~~ 235 (372)
T 1k8k_C 169 FSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH-D-----STVCLADADKKM 235 (372)
T ss_dssp EECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET-T-----TEEEEEEGGGTT
T ss_pred EEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeC-C-----CEEEEEECCCCc
Confidence 885311 00111111111111223333 5666666665 2 468899987765
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.21 Score=49.49 Aligned_cols=152 Identities=9% Similarity=0.030 Sum_probs=80.4
Q ss_pred CCeEEEEeCCCCceEEccCCCCcccccEEEE--eCCEEEEEcCccccCCCC-cceEEEEeCCCC-ceeeccCCCCCc---
Q psy2979 213 LDSVERYDPTKNEWSYIEPMKLAVTSPAVVA--HEGMLYVTGGAILEDGDG-IEQVQRYNPKVN-QWQDLAPMLIPR--- 285 (400)
Q Consensus 213 ~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~-~W~~~~~~~~~r--- 285 (400)
...+..+|..+++-..+............+. -+++..+++.. +... ...++.+|+.+. .+..+.......
T Consensus 234 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~---~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~ 310 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEV---NRAQNECKVNAYDAETGRFVRTLFVETDKHYVE 310 (706)
T ss_dssp EEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEE---CTTSCEEEEEEEETTTCCEEEEEEEEECSSCCC
T ss_pred eeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEe---CCCCCeeEEEEEECCCCceeeEEEEccCCCeEC
Confidence 3568899999887655542211111112222 25554444333 3222 458999999887 665543111110
Q ss_pred -eeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--C-CEEEEEcCccCCCCCCC
Q psy2979 286 -SGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--D-GKIYVLGGEEGWDGYHD 359 (400)
Q Consensus 286 -~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~-~~lyv~GG~~~~~~~~~ 359 (400)
.......- ++++++.+..++ ...++.+|...+....+....... ...... + +.||+.+.. + .....
T Consensus 311 ~~~~~~~sp~~dg~~l~~~~~~g----~~~l~~~~~~~~~~~~l~~~~~~v--~~~~~~spdg~~l~~~~~~-~-~~~~~ 382 (706)
T 2z3z_A 311 PLHPLTFLPGSNNQFIWQSRRDG----WNHLYLYDTTGRLIRQVTKGEWEV--TNFAGFDPKGTRLYFESTE-A-SPLER 382 (706)
T ss_dssp CCSCCEECTTCSSEEEEEECTTS----SCEEEEEETTSCEEEECCCSSSCE--EEEEEECTTSSEEEEEESS-S-CTTCB
T ss_pred ccCCceeecCCCCEEEEEEccCC----ccEEEEEECCCCEEEecCCCCeEE--EeeeEEcCCCCEEEEEecC-C-CCceE
Confidence 01122333 677665554332 467999998777777665322111 111233 3 456666543 2 22245
Q ss_pred eEEEEECCCCcEEEec
Q psy2979 360 SIECYDVDNDSWEIMS 375 (400)
Q Consensus 360 ~v~~yd~~~~~W~~~~ 375 (400)
.++.+|..+++.+.+.
T Consensus 383 ~l~~~d~~~~~~~~l~ 398 (706)
T 2z3z_A 383 HFYCIDIKGGKTKDLT 398 (706)
T ss_dssp EEEEEETTCCCCEESC
T ss_pred EEEEEEcCCCCceecc
Confidence 8999999887766654
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.087 Score=47.28 Aligned_cols=194 Identities=13% Similarity=0.057 Sum_probs=96.3
Q ss_pred eEEEECCeEEEEEeecCEEEEEECCCCCeEEccCC---CCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCce
Q psy2979 151 GLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSL---KFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEW 226 (400)
Q Consensus 151 ~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~---~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 226 (400)
+++...+..+........+..+|..+++-...... .....-.+++.. +++.++.|+.+ ..+..||..+++-
T Consensus 87 ~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d-----~~i~iwd~~~~~~ 161 (344)
T 4gqb_B 87 DLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD-----ICIKVWDLAQQVV 161 (344)
T ss_dssp EEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEE
T ss_pred EEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC-----CeEEEEECCCCcE
Confidence 34444444244445556788888877653221110 011111122222 56777777765 3588899988754
Q ss_pred EEccCCCCccccc-EEEE-e-CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE---CCeEEEE
Q psy2979 227 SYIEPMKLAVTSP-AVVA-H-EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL---DSCIYVL 300 (400)
Q Consensus 227 ~~~~~l~~~~~~~-~~~~-~-~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~---~~~iyv~ 300 (400)
... +......- +++. . +..+++.|+. |+ .+..||..+.+-...-...........+.. ++.+++.
T Consensus 162 ~~~--~~~h~~~V~~~~~~~~~~~~l~s~s~---D~----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s 232 (344)
T 4gqb_B 162 LSS--YRAHAAQVTCVAASPHKDSVFLSCSE---DN----RILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVF 232 (344)
T ss_dssp EEE--ECCCSSCEEEEEECSSCTTEEEEEET---TS----CEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEE
T ss_pred EEE--EcCcCCceEEEEecCCCCCceeeecc---cc----ccccccccccceeeeeecceeeccceeeeecCCCCcceEE
Confidence 322 21111111 1222 2 3357788877 54 688999877653322111111111122222 5578888
Q ss_pred cCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CC-EEEEEcCccCCCCCCCeEEEEECCCCcEE
Q psy2979 301 GGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DG-KIYVLGGEEGWDGYHDSIECYDVDNDSWE 372 (400)
Q Consensus 301 GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~W~ 372 (400)
|+. ...+..||..+++- +..+......-..+.+ ++ ++++.|+. + ..|.+||..+++-.
T Consensus 233 g~~------dg~v~~wd~~~~~~--~~~~~~h~~~v~~v~fsp~g~~~lasgs~-D-----~~i~vwd~~~~~~~ 293 (344)
T 4gqb_B 233 GDE------NGTVSLVDTKSTSC--VLSSAVHSQCVTGLVFSPHSVPFLASLSE-D-----CSLAVLDSSLSELF 293 (344)
T ss_dssp EET------TSEEEEEESCC--C--CEEEECCSSCEEEEEECSSSSCCEEEEET-T-----SCEEEECTTCCEEE
T ss_pred ecc------CCcEEEEECCCCcE--EEEEcCCCCCEEEEEEccCCCeEEEEEeC-C-----CeEEEEECCCCcEE
Confidence 876 45788999876542 1111111112223333 34 56666765 2 35888998887543
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.24 Score=43.02 Aligned_cols=236 Identities=13% Similarity=0.091 Sum_probs=106.2
Q ss_pred EEEEEeccCCCcccceEEEEEcCCCceEEccCCcc-cceeeeEEEEC---CeEEEEEeecCEEEEEECCCCCeEEccCCC
Q psy2979 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPF-AISKHGLVVSG---RNTIYCLDIVDIVYVAASMHKILHSLGSLK 186 (400)
Q Consensus 111 ~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~-~~~~~~~~~~~---~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~ 186 (400)
..++.|+.+ ..+.+||...+....+..+.. ...-.+++... +..|.....-..+..+|..+++|..+..+.
T Consensus 22 ~~las~s~D-----~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~ 96 (297)
T 2pm7_B 22 KRMATCSSD-----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHA 96 (297)
T ss_dssp SEEEEEETT-----SCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEEC
T ss_pred CEEEEEeCC-----CEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEee
Confidence 455666655 467778776433221111111 11112233321 331333355567888898887765443322
Q ss_pred CcceeeeEEEE--C--CEEEEEcccCCCCCCCeEEEEeCCCCc-eE--EccCCCCcccccEEEE--------------eC
Q psy2979 187 FDFDVSGIAML--D--GFVYAVGGWDGSCRLDSVERYDPTKNE-WS--YIEPMKLAVTSPAVVA--------------HE 245 (400)
Q Consensus 187 ~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~v~~yd~~~~~-W~--~~~~l~~~~~~~~~~~--------------~~ 245 (400)
........+.. + +.+++.|+.+ ..+..||..++. +. .+..-.... .+++. .+
T Consensus 97 ~h~~~v~~v~~~p~~~g~~l~s~s~d-----~~v~~wd~~~~~~~~~~~~~~h~~~v--~~~~~~p~~~~~~~~~~~~~~ 169 (297)
T 2pm7_B 97 VHSASVNSVQWAPHEYGPMLLVASSD-----GKVSVVEFKENGTTSPIIIDAHAIGV--NSASWAPATIEEDGEHNGTKE 169 (297)
T ss_dssp CCSSCEEEEEECCGGGCSEEEEEETT-----SEEEEEEBCSSSCBCCEEEECCSSCE--EEEEECCCC------------
T ss_pred cCCCceeEEEeCcCCCCcEEEEEECC-----CcEEEEEecCCCceeeeeeecccCcc--ceEeecCCcccccccCCCCCC
Confidence 11111112222 1 4566667655 357777776542 21 010000000 01111 12
Q ss_pred CEEEEEcCccccCCCCcceEEEEeCCCC--ceeeccCCCCCceeeeEEEE--C---CeEEEEcCcCCCCCCCCeEEEEEC
Q psy2979 246 GMLYVTGGAILEDGDGIEQVQRYNPKVN--QWQDLAPMLIPRSGAAICAL--D---SCIYVLGGWHASTENTNRVECYHI 318 (400)
Q Consensus 246 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~r~~~~~~~~--~---~~iyv~GG~~~~~~~~~~v~~yd~ 318 (400)
++.++.|+. ++ .+..||..+. .|.....+.........+.. + +.+++.|+. ...+..+|.
T Consensus 170 ~~~l~sgs~---D~----~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~------D~~v~iWd~ 236 (297)
T 2pm7_B 170 SRKFVTGGA---DN----LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQ------DRTCIIWTQ 236 (297)
T ss_dssp CCEEEEEET---TS----CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET------TSCEEEEEE
T ss_pred cceEEEEcC---CC----cEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEEC------CCcEEEEEe
Confidence 457778877 54 5666666443 35444333322111222222 2 367777765 346777776
Q ss_pred CC--CeEEEccCC-cCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECC-CCcEEEecCC
Q psy2979 319 AE--NTWEYKSPM-KEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVD-NDSWEIMSHL 377 (400)
Q Consensus 319 ~~--~~W~~~~~~-~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~-~~~W~~~~~~ 377 (400)
.+ ..|....-. .........+.. ++++++.||. + ..|.+|++. .+.|..+..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~-D-----~~v~lw~~~~~g~w~~~~~~ 295 (297)
T 2pm7_B 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG-D-----NKVTLWKENLEGKWEPAGEV 295 (297)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEET-T-----SCEEEEEECTTSCEEEC---
T ss_pred CCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcC-C-----CcEEEEEECCCCcEEecccc
Confidence 55 335431110 100111112222 6777777776 3 246667655 4679887654
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.42 Score=46.79 Aligned_cols=234 Identities=12% Similarity=0.053 Sum_probs=125.7
Q ss_pred ceEEEEEcC--C-CceEEccCCc---ccceeeeEEEE-CCeEEEEEeec----------CEEEEEECCC------CCeEE
Q psy2979 125 RSVEGFCVK--T-KVWKTLSCLP---FAISKHGLVVS-GRNTIYCLDIV----------DIVYVAASMH------KILHS 181 (400)
Q Consensus 125 ~~~~~yd~~--~-~~w~~~~~~~---~~~~~~~~~~~-~~~~iyv~~~~----------~~~~~yd~~~------~~w~~ 181 (400)
..++.++.. . +...++...+ ........+.. ++..|+..... ..++.+|..+ ++...
T Consensus 102 ~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 181 (662)
T 3azo_A 102 QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRE 181 (662)
T ss_dssp CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEE
T ss_pred CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeE
Confidence 467778776 3 5666666543 12222333433 55535544222 4789999887 66555
Q ss_pred cc-CCCCcceeeeEE-EECCEEEEEcccCCCC---CCCeEEEEeCC-CCceEEccCCCCc--ccccEEE-EeCCEEEEEc
Q psy2979 182 LG-SLKFDFDVSGIA-MLDGFVYAVGGWDGSC---RLDSVERYDPT-KNEWSYIEPMKLA--VTSPAVV-AHEGMLYVTG 252 (400)
Q Consensus 182 ~~-~~~~~r~~~~~~-~~~~~iyv~GG~~~~~---~~~~v~~yd~~-~~~W~~~~~l~~~--~~~~~~~-~~~~~iyv~G 252 (400)
+. .-. ......+ .-+++..++...+... ....++.+|.. ++++.....+... ......+ .-+|++|+.+
T Consensus 182 l~~~~~--~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~ 259 (662)
T 3azo_A 182 LSDDAH--RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVAT 259 (662)
T ss_dssp SSCSCS--SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEE
T ss_pred EEecCC--CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEE
Confidence 54 211 1111222 2255433333332211 13578999998 5633332222211 1111222 2367788776
Q ss_pred CccccCCCCcceEEEEeCCCCceeeccCCCCCce-------eeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEE
Q psy2979 253 GAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRS-------GAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWE 324 (400)
Q Consensus 253 G~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~-------~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 324 (400)
.. ++ ...++.+|+.+.++..+.+...... ....+.. ++++++.+.. + ...++.+|..+++..
T Consensus 260 ~~---~~--~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~----~~~l~~~d~~~~~~~ 329 (662)
T 3azo_A 260 DR---TG--WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G----AAVLGILDPESGELV 329 (662)
T ss_dssp CT---TS--SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S----SCEEEEEETTTTEEE
T ss_pred CC---CC--CeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-C----ccEEEEEECCCCcEE
Confidence 65 43 3479999998888888754322110 1123333 6777777654 2 568999999888877
Q ss_pred EccCCcCccCcceE-EEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEec
Q psy2979 325 YKSPMKEKRYRPGI-AVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMS 375 (400)
Q Consensus 325 ~~~~~~~~~~~~~~-~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 375 (400)
.+...... ...+ ..-++.+++..+. . .....++.+|+.+++.+.+.
T Consensus 330 ~l~~~~~~--~~~~~s~~~~~~~~~~~~-~--~~~~~i~~~d~~~g~~~~l~ 376 (662)
T 3azo_A 330 DAAGPWTE--WAATLTVSGTRAVGVAAS-P--RTAYEVVELDTVTGRARTIG 376 (662)
T ss_dssp ECCSSCCE--EEEEEEEETTEEEEEEEE-T--TEEEEEEEEETTTCCEEEEE
T ss_pred EecCCCCe--EEEEEecCCCEEEEEEcC-C--CCCCEEEEEECCCCceEEee
Confidence 76432111 1122 2336666666543 1 22457899999888887774
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.17 Score=46.59 Aligned_cols=188 Identities=12% Similarity=-0.031 Sum_probs=98.5
Q ss_pred CEEEEEECCCCCeEEccCCCCcceeeeEEE-ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE-e
Q psy2979 167 DIVYVAASMHKILHSLGSLKFDFDVSGIAM-LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA-H 244 (400)
Q Consensus 167 ~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~ 244 (400)
..++.+|.....-..+..-.. ...+.+. -+++.+++++.++ ....+..+|+.+++...+...+... .+.+. -
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~~--~v~~~~~Spdg~~la~~s~~~--~~~~i~~~d~~tg~~~~l~~~~~~~--~~~~~sp 232 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSPQ--PLMSPAWSPDGSKLAYVTFES--GRSALVIQTLANGAVRQVASFPRHN--GAPAFSP 232 (415)
T ss_dssp EEEEEEETTSCSCEEEEEESS--CEEEEEECTTSSEEEEEECTT--SSCEEEEEETTTCCEEEEECCSSCE--EEEEECT
T ss_pred ceEEEEcCCCCCCEEEeCCCC--cceeeEEcCCCCEEEEEEecC--CCcEEEEEECCCCcEEEeecCCCcc--cCEEEcC
Confidence 578888887554433322111 1111221 2555445554432 1257999999999877665443211 12222 2
Q ss_pred CCE-EEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeE
Q psy2979 245 EGM-LYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTW 323 (400)
Q Consensus 245 ~~~-iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 323 (400)
+++ |++.+.. ++ ...++.+|..+.+...+...+.. .......-+++.+++++.... ...++.+|..+++-
T Consensus 233 dg~~la~~~~~---~g--~~~i~~~d~~~~~~~~l~~~~~~-~~~~~~spdg~~l~~~s~~~g---~~~i~~~d~~~~~~ 303 (415)
T 2hqs_A 233 DGSKLAFALSK---TG--SLNLYVMDLASGQIRQVTDGRSN-NTEPTWFPDSQNLAFTSDQAG---RPQVYKVNINGGAP 303 (415)
T ss_dssp TSSEEEEEECT---TS--SCEEEEEETTTCCEEECCCCSSC-EEEEEECTTSSEEEEEECTTS---SCEEEEEETTSSCC
T ss_pred CCCEEEEEEec---CC--CceEEEEECCCCCEEeCcCCCCc-ccceEECCCCCEEEEEECCCC---CcEEEEEECCCCCE
Confidence 454 5545543 33 24799999988877666443221 111111225654444432111 34899999988775
Q ss_pred EEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEec
Q psy2979 324 EYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMS 375 (400)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 375 (400)
..+.... .......+ +|+.+++++. .. ....++.+|+.+++...+.
T Consensus 304 ~~l~~~~---~~~~~~~~spdG~~l~~~~~-~~--g~~~i~~~d~~~~~~~~l~ 351 (415)
T 2hqs_A 304 QRITWEG---SQNQDADVSSDGKFMVMVSS-NG--GQQHIAKQDLATGGVQVLS 351 (415)
T ss_dssp EECCCSS---SEEEEEEECTTSSEEEEEEE-CS--SCEEEEEEETTTCCEEECC
T ss_pred EEEecCC---CcccCeEECCCCCEEEEEEC-cC--CceEEEEEECCCCCEEEec
Confidence 5443211 11112233 5655555443 21 1357999999998887654
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=96.74 E-value=0.29 Score=44.17 Aligned_cols=110 Identities=12% Similarity=0.110 Sum_probs=57.3
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCC---C-C-cccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCC
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPM---K-L-AVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPK 271 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l---~-~-~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~ 271 (400)
++ +++.|+.+ ..+..||..+.+....-.. . . ...-.+++. -++.++++|+. ++. ...+..||..
T Consensus 197 ~~-~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~---d~~-~g~i~i~d~~ 266 (397)
T 1sq9_A 197 RG-LIATGFNN-----GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHD---SNS-FGCITLYETE 266 (397)
T ss_dssp TS-EEEEECTT-----SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEE---ETT-EEEEEEEETT
T ss_pred Cc-eEEEEeCC-----CcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEec---CCC-CceEEEEECC
Confidence 45 66666654 4588899887754332111 1 0 111112222 25677777776 310 1478999987
Q ss_pred CCceee-ccCCC--C--------CceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeE
Q psy2979 272 VNQWQD-LAPML--I--------PRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTW 323 (400)
Q Consensus 272 ~~~W~~-~~~~~--~--------~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 323 (400)
+.+-.. +...+ . .......+.. ++.+++.|+. ...+..||..+.+-
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~ 325 (397)
T 1sq9_A 267 FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW------DGKLRFWDVKTKER 325 (397)
T ss_dssp TCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET------TSEEEEEETTTTEE
T ss_pred CCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC------CCeEEEEEcCCCce
Confidence 654221 11100 0 1111122222 5677777765 56899999987764
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.32 Score=43.82 Aligned_cols=234 Identities=9% Similarity=-0.041 Sum_probs=117.1
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEE-EECCeEEEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLV-VSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYA 203 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~-~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv 203 (400)
..++.+|..+++..++...+.. ...... .-++..|+.......++.+|+.+++-..+...+... ..+++.++
T Consensus 60 ~~l~~~d~~~~~~~~l~~~~~~-~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~------~~~g~~l~ 132 (396)
T 3c5m_A 60 RNYYLLNLETQQAVQLTEGKGD-NTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEW------KGYGTWVA 132 (396)
T ss_dssp CEEEEEETTTTEEEECCCSSCB-CTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTE------EEEEEEEE
T ss_pred ceEEEEECCCCcEEEeecCCCC-ccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEeccccc------CCCCCEEE
Confidence 4678889888887766532221 111122 224442444444457888888877655444332210 01111111
Q ss_pred Ecc-------------cC--C----------CCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe-CCE-EEEEcCccc
Q psy2979 204 VGG-------------WD--G----------SCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH-EGM-LYVTGGAIL 256 (400)
Q Consensus 204 ~GG-------------~~--~----------~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~-~~~-iyv~GG~~~ 256 (400)
+.. .. + ......++.+|+.+++...+..-+... .+....- ++. |+.....
T Consensus 133 ~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~-~~~~~sp~dg~~l~~~~~~-- 209 (396)
T 3c5m_A 133 NSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWL-GHPIYRPFDDSTVGFCHEG-- 209 (396)
T ss_dssp CTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCE-EEEEEETTEEEEEEEEECS--
T ss_pred eccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCccc-ccceECCCCCCEEEEEecC--
Confidence 110 00 0 022346888999988876664321111 1111222 343 4444321
Q ss_pred cCCCC-cceEEEEeCCCCceeeccCCCCCceeee-EE-EECCe-EEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCc
Q psy2979 257 EDGDG-IEQVQRYNPKVNQWQDLAPMLIPRSGAA-IC-ALDSC-IYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEK 332 (400)
Q Consensus 257 ~~~~~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~-~~-~~~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~ 332 (400)
.... ...++.+|..+..+..+.. ..+..... .+ .-+++ |+..+ ...... ...++.+|+.+++...+...+..
T Consensus 210 -~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~~spdg~~l~~~~-~~~~~~-~~~l~~~d~~~g~~~~l~~~~~~ 285 (396)
T 3c5m_A 210 -PHDLVDARMWLVNEDGSNVRKIKE-HAEGESCTHEFWIPDGSAMAYVS-YFKGQT-DRVIYKANPETLENEEVMVMPPC 285 (396)
T ss_dssp -CSSSCSCCCEEEETTSCCCEESSC-CCTTEEEEEEEECTTSSCEEEEE-EETTTC-CEEEEEECTTTCCEEEEEECCSE
T ss_pred -CCCCCCceEEEEECCCCceeEeec-cCCCccccceEECCCCCEEEEEe-cCCCCc-cceEEEEECCCCCeEEeeeCCCC
Confidence 1111 2478999998887777654 22111121 22 22555 44443 221111 24599999998887776554421
Q ss_pred cCcceEEEE-CCEEEEEcCccCC-----------CCCCCeEEEEECCCCcEEEecC
Q psy2979 333 RYRPGIAVI-DGKIYVLGGEEGW-----------DGYHDSIECYDVDNDSWEIMSH 376 (400)
Q Consensus 333 ~~~~~~~~~-~~~lyv~GG~~~~-----------~~~~~~v~~yd~~~~~W~~~~~ 376 (400)
. ....- +|+++++.+. .. ......++.+|+.+++.+.+..
T Consensus 286 --~-~~~s~~dg~~l~~~~~-~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~ 337 (396)
T 3c5m_A 286 --S-HLMSNFDGSLMVGDGC-DAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCK 337 (396)
T ss_dssp --E-EEEECSSSSEEEEEEC-CC----------CCCCCCEEEEEETTTTBCCEEEE
T ss_pred --C-CCccCCCCceEEEecC-CcceeeccccccccCCCCcEEEEecccCceEEccC
Confidence 1 22223 6776666442 10 1123689999999887666543
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.31 Score=43.18 Aligned_cols=190 Identities=13% Similarity=0.129 Sum_probs=100.5
Q ss_pred EEEEEECCCCCeEEccCCCCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCC--ceEEccC-C-----CCcccc
Q psy2979 168 IVYVAASMHKILHSLGSLKFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKN--EWSYIEP-M-----KLAVTS 238 (400)
Q Consensus 168 ~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~-l-----~~~~~~ 238 (400)
.+..+|+.+++.........-..-.+++.- ++.+|+....+ ..+.+||+..+ .-..+.. . ......
T Consensus 70 ~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~-----~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~ 144 (329)
T 3fvz_A 70 TILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVAL-----HQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQ 144 (329)
T ss_dssp CEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTT-----TEEEEECTTCSSCCSEEESBTTBCCCSTTCCSS
T ss_pred cEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCC-----CEEEEEeCCCCeEEEEEecccCCCCCCccccCC
Confidence 577888877665432211110111223332 67799875432 56899998765 2222211 0 111112
Q ss_pred c-EEEEe--CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCC-------CCCce-eeeEEEE-C-CeEEEEcCcCC
Q psy2979 239 P-AVVAH--EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPM-------LIPRS-GAAICAL-D-SCIYVLGGWHA 305 (400)
Q Consensus 239 ~-~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~-------~~~r~-~~~~~~~-~-~~iyv~GG~~~ 305 (400)
. .++.. ++.||+..+. . ...+.+||+....-..+... +.... -.+++.- + +.||+....
T Consensus 145 P~~ia~~~~~g~lyv~d~~---~---~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~-- 216 (329)
T 3fvz_A 145 PTDVAVEPSTGAVFVSDGY---C---NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE-- 216 (329)
T ss_dssp EEEEEECTTTCCEEEEECS---S---CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT--
T ss_pred CcEEEEeCCCCeEEEEeCC---C---CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC--
Confidence 2 33443 6899999852 1 34799999765544443211 11111 2334443 4 899999865
Q ss_pred CCCCCCeEEEEECCCCeEEEccCCc-CccCcceEEEECCEEEEEcCccC-CCCCCCeEEEEECCCCcEEEe
Q psy2979 306 STENTNRVECYHIAENTWEYKSPMK-EKRYRPGIAVIDGKIYVLGGEEG-WDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 306 ~~~~~~~v~~yd~~~~~W~~~~~~~-~~~~~~~~~~~~~~lyv~GG~~~-~~~~~~~v~~yd~~~~~W~~~ 374 (400)
...+.+||+.+++....-..+ ......+++...+.+|...|... .......+.++|+.+++....
T Consensus 217 ----~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~ 283 (329)
T 3fvz_A 217 ----NGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDV 283 (329)
T ss_dssp ----TTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEE
T ss_pred ----CCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEE
Confidence 568999999866654432211 12112223333466777666411 112345789999888875554
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.18 Score=44.74 Aligned_cols=188 Identities=10% Similarity=0.034 Sum_probs=93.4
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEEC----CeEEEEEeecCEEEEEECCCCC--eEEcc
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSG----RNTIYCLDIVDIVYVAASMHKI--LHSLG 183 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~----~~~iyv~~~~~~~~~yd~~~~~--w~~~~ 183 (400)
..+++.|+.+ .....+..||..+++............-.+++... +..++.......+..||..+++ ...+.
T Consensus 31 ~~l~~~~s~~--~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 108 (357)
T 3i2n_A 31 AKFVTMGNFA--RGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVK 108 (357)
T ss_dssp SEEEEEEC----CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEEC
T ss_pred ceEEEecCcc--CCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEE
Confidence 3566666541 11246888888887755432222222222333332 2313333555678888887664 12221
Q ss_pred CCCCcceeeeEE-------EECCEEEEEcccCCCCCCCeEEEEeCCCCc--eEEccCCCC--cccccEEE-----EeCCE
Q psy2979 184 SLKFDFDVSGIA-------MLDGFVYAVGGWDGSCRLDSVERYDPTKNE--WSYIEPMKL--AVTSPAVV-----AHEGM 247 (400)
Q Consensus 184 ~~~~~r~~~~~~-------~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~l~~--~~~~~~~~-----~~~~~ 247 (400)
.-..+ -.++. .-++..++.|+.+ ..+..||..+++ ...+..... ...-.+++ ..++.
T Consensus 109 ~~~~~--v~~~~~~~~~~~s~~~~~l~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 181 (357)
T 3i2n_A 109 GHKEI--INAIDGIGGLGIGEGAPEIVTGSRD-----GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEER 181 (357)
T ss_dssp CCSSC--EEEEEEESGGGCC-CCCEEEEEETT-----SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCC
T ss_pred ecccc--eEEEeeccccccCCCccEEEEEeCC-----CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCC
Confidence 11111 11111 1245566667655 358888988764 333332221 11112222 14677
Q ss_pred EEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE----CCeEEEEcCcCCCCCCCCeEEEEECCCC
Q psy2979 248 LYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL----DSCIYVLGGWHASTENTNRVECYHIAEN 321 (400)
Q Consensus 248 iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~v~~yd~~~~ 321 (400)
+++.|+. + ..+..||..+.+-........+ ..++... ++..++.|+. ...+..||..+.
T Consensus 182 ~l~~~~~---d----~~i~i~d~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~ 244 (357)
T 3i2n_A 182 VVCAGYD---N----GDIKLFDLRNMALRWETNIKNG--VCSLEFDRKDISMNKLVATSL------EGKFHVFDMRTQ 244 (357)
T ss_dssp EEEEEET---T----SEEEEEETTTTEEEEEEECSSC--EEEEEESCSSSSCCEEEEEES------TTEEEEEEEEEE
T ss_pred EEEEEcc---C----CeEEEEECccCceeeecCCCCc--eEEEEcCCCCCCCCEEEEECC------CCeEEEEeCcCC
Confidence 7777776 4 3799999987764333222222 2223332 4667777765 457888887653
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.57 Score=46.25 Aligned_cols=117 Identities=15% Similarity=0.159 Sum_probs=72.6
Q ss_pred EEEECCeEEEEEeecCEEEEEECCCCC--eEEccCCCCc--------ceeeeEEEECCEEEEEcccCCCCCCCeEEEEeC
Q psy2979 152 LVVSGRNTIYCLDIVDIVYVAASMHKI--LHSLGSLKFD--------FDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDP 221 (400)
Q Consensus 152 ~~~~~~~~iyv~~~~~~~~~yd~~~~~--w~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~ 221 (400)
-++.++. ||+......++.+|..+++ |+.-...+.. ....+.+..+++||+... ...+..+|.
T Consensus 73 P~v~~g~-vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~------dg~l~alD~ 145 (677)
T 1kb0_A 73 PVVVDGI-MYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW------DGRLIALDA 145 (677)
T ss_dssp CEEETTE-EEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT------TSEEEEEET
T ss_pred CEEECCE-EEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC------CCEEEEEEC
Confidence 3556888 9998767789999998775 8765443211 112345567889988643 246899999
Q ss_pred CCCc--eEEccC-C-CC-cccccEEEEeCCEEEEEcCccccCCCC-cceEEEEeCCCCc--eeec
Q psy2979 222 TKNE--WSYIEP-M-KL-AVTSPAVVAHEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQ--WQDL 278 (400)
Q Consensus 222 ~~~~--W~~~~~-l-~~-~~~~~~~~~~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~--W~~~ 278 (400)
.+++ |+.-.. - +. .....+.++.++.+|+..+. .... ...+..||..+.+ |+.-
T Consensus 146 ~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~---~~~~~~g~v~a~D~~tG~~~W~~~ 207 (677)
T 1kb0_A 146 ATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGG---AEYGVRGYITAYDAETGERKWRWF 207 (677)
T ss_dssp TTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBC---TTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecc---cccCCCCEEEEEECCCCcEEEEec
Confidence 8874 876432 1 11 11222335568888876542 1111 3579999988765 8754
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.3 Score=42.76 Aligned_cols=200 Identities=11% Similarity=0.022 Sum_probs=109.0
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeec---CEEEEEECCCCCeEEccCCCCcceeeeEEEE-CC
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIV---DIVYVAASMHKILHSLGSLKFDFDVSGIAML-DG 199 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~---~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~~ 199 (400)
..+..+|+..+ .......+ ..-++++.. ++. +|+.... ..++.+|+.+++...+...+..+...+.+.. ++
T Consensus 53 ~~I~~~d~~g~-~~~~~~~~--~~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~ 128 (306)
T 2p4o_A 53 GEIVSITPDGN-QQIHATVE--GKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT 128 (306)
T ss_dssp TEEEEECTTCC-EEEEEECS--SEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSS
T ss_pred CeEEEECCCCc-eEEEEeCC--CCceeEEEcCCCc-EEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCC
Confidence 46788887654 22222222 233455554 556 8888432 2588999888888776655444443343333 45
Q ss_pred EEEEEcccCCCCCCCeEEEEeCCCCc---eEEccC----CC-Ccc-cccEEEEeCCEEEEEcCccccCCCCcceEEEEeC
Q psy2979 200 FVYAVGGWDGSCRLDSVERYDPTKNE---WSYIEP----MK-LAV-TSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNP 270 (400)
Q Consensus 200 ~iyv~GG~~~~~~~~~v~~yd~~~~~---W~~~~~----l~-~~~-~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~ 270 (400)
.+|+.-- ....++++|+.+++ |..-+. .+ ... ...++..-++.+|+.--. .+.+++||.
T Consensus 129 ~~~v~d~-----~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~-------~~~I~~~~~ 196 (306)
T 2p4o_A 129 QYLTADS-----YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTE-------KMLLLRIPV 196 (306)
T ss_dssp EEEEEET-----TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETT-------TTEEEEEEB
T ss_pred cEEEEEC-----CCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCC-------CCEEEEEEe
Confidence 6777532 12478999987652 211111 11 111 112233345689988544 458999998
Q ss_pred CCC-ce---eeccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEEC---
Q psy2979 271 KVN-QW---QDLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVID--- 342 (400)
Q Consensus 271 ~~~-~W---~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~--- 342 (400)
..+ +. +....+..| .+++.- +|.+|+.... .+.|.+||+. ++...+...+.+...+..++++
T Consensus 197 ~~~g~~~~~~~~~~~~~P---~gi~vd~dG~l~va~~~------~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~ 266 (306)
T 2p4o_A 197 DSTDKPGEPEIFVEQTNI---DDFAFDVEGNLYGATHI------YNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTE 266 (306)
T ss_dssp CTTSCBCCCEEEEESCCC---SSEEEBTTCCEEEECBT------TCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCST
T ss_pred CCCCCCCccEEEeccCCC---CCeEECCCCCEEEEeCC------CCeEEEECCC-CCEEEEeecccccCCceEEEEeccc
Confidence 652 21 111112122 223333 6789888643 4679999986 5544443333333445556654
Q ss_pred ---CEEEEEcC
Q psy2979 343 ---GKIYVLGG 350 (400)
Q Consensus 343 ---~~lyv~GG 350 (400)
+.|||...
T Consensus 267 ~d~~~LyVt~~ 277 (306)
T 2p4o_A 267 GDCTAIYVVTN 277 (306)
T ss_dssp TTTTEEEEEEC
T ss_pred CCCCEEEEECC
Confidence 68999754
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.15 Score=47.21 Aligned_cols=186 Identities=13% Similarity=0.066 Sum_probs=90.4
Q ss_pred EEEEEeccCCCcccceEEEEEcCCCceEEccCC-cccceeeeEEEE--CCeEEEEEeecCEEEEEECCCCCeEEccCCCC
Q psy2979 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCL-PFAISKHGLVVS--GRNTIYCLDIVDIVYVAASMHKILHSLGSLKF 187 (400)
Q Consensus 111 ~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~-~~~~~~~~~~~~--~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~ 187 (400)
.+++.|+.+ ..+.++|..+++...+..+ .....-.+++.. ++..|+....-..+..+|..++..........
T Consensus 133 ~~lasGs~d-----g~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 207 (435)
T 4e54_B 133 STVAVGSKG-----GDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDT 207 (435)
T ss_dssp TCEEEEETT-----SCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSS
T ss_pred CEEEEEeCC-----CEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCC
Confidence 355666655 4677888776553322211 112222334443 34413333444567888987765544433221
Q ss_pred cc-eeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe---CCEEEEEcCccccCCCCc
Q psy2979 188 DF-DVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH---EGMLYVTGGAILEDGDGI 262 (400)
Q Consensus 188 ~r-~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~ 262 (400)
.. ...++... ++.+++.|+.+ ..+..||...+.- ..+......-..+.+ ++.+++.|+. ++
T Consensus 208 ~~~~~~~~~~~~~~~~l~~g~~d-----g~i~~wd~~~~~~---~~~~~h~~~v~~v~~~p~~~~~~~s~s~---d~--- 273 (435)
T 4e54_B 208 INIWFCSLDVSASSRMVVTGDNV-----GNVILLNMDGKEL---WNLRMHKKKVTHVALNPCCDWFLATASV---DQ--- 273 (435)
T ss_dssp CSCCCCCEEEETTTTEEEEECSS-----SBEEEEESSSCBC---CCSBCCSSCEEEEEECTTCSSEEEEEET---TS---
T ss_pred CCccEEEEEECCCCCEEEEEeCC-----CcEeeeccCccee---EEEecccceEEeeeecCCCceEEEEecC---cc---
Confidence 11 11222222 56777777765 3588888765432 222211111122222 3457777776 44
Q ss_pred ceEEEEeCCCCceeeccCCCCCc-eeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCe
Q psy2979 263 EQVQRYNPKVNQWQDLAPMLIPR-SGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENT 322 (400)
Q Consensus 263 ~~v~~yd~~~~~W~~~~~~~~~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 322 (400)
.+..||..+..-...-....+. .....+.+ ++..++.|+. ...+..||..+..
T Consensus 274 -~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~------D~~i~iwd~~~~~ 329 (435)
T 4e54_B 274 -TVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ------KSEIRVYSASQWD 329 (435)
T ss_dssp -BCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES------SSCEEEEESSSSS
T ss_pred -eeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC------CCEEEEEECCCCc
Confidence 5778887654322110000111 11111111 5677777765 4578888887653
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.3 Score=42.35 Aligned_cols=189 Identities=16% Similarity=0.156 Sum_probs=100.0
Q ss_pred EEEE-eecCEEEEEECCCCCeEEccCCCCcceeeeEEE-ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCC---
Q psy2979 160 IYCL-DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAM-LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKL--- 234 (400)
Q Consensus 160 iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~--- 234 (400)
+|++ .....++.||+.++ ........ ..-.+++. -++.+|+.... ...+.+||+.+++...+.....
T Consensus 42 l~~~~~~~~~i~~~~~~~~-~~~~~~~~--~~~~~l~~~~dg~l~v~~~~-----~~~i~~~d~~~g~~~~~~~~~~~~~ 113 (296)
T 3e5z_A 42 VIFSDVRQNRTWAWSDDGQ-LSPEMHPS--HHQNGHCLNKQGHLIACSHG-----LRRLERQREPGGEWESIADSFEGKK 113 (296)
T ss_dssp EEEEEGGGTEEEEEETTSC-EEEEESSC--SSEEEEEECTTCCEEEEETT-----TTEEEEECSTTCCEEEEECEETTEE
T ss_pred EEEEeCCCCEEEEEECCCC-eEEEECCC--CCcceeeECCCCcEEEEecC-----CCeEEEEcCCCCcEEEEeeccCCCC
Confidence 5555 44567889999887 55443311 11123333 26778876431 2469999998888776643211
Q ss_pred -cccccEEEEeCCEEEEE----cCcccc----C-CCC-cceEEEEeCCCCceeecc-CCCCCceeeeEEEE-CCeEEEEc
Q psy2979 235 -AVTSPAVVAHEGMLYVT----GGAILE----D-GDG-IEQVQRYNPKVNQWQDLA-PMLIPRSGAAICAL-DSCIYVLG 301 (400)
Q Consensus 235 -~~~~~~~~~~~~~iyv~----GG~~~~----~-~~~-~~~v~~yd~~~~~W~~~~-~~~~~r~~~~~~~~-~~~iyv~G 301 (400)
.+....+..-+|.+|+. |..... . ... ...++++|+. .+...+. .+..+ .+++.. ++++++.+
T Consensus 114 ~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~---~gi~~s~dg~~lv~~ 189 (296)
T 3e5z_A 114 LNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKP---NGLAFLPSGNLLVSD 189 (296)
T ss_dssp CCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSE---EEEEECTTSCEEEEE
T ss_pred CCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCC---ccEEECCCCCEEEEe
Confidence 11222333347889997 321000 0 000 3479999987 5444442 22222 223332 56666554
Q ss_pred CcCCCCCCCCeEEEEECC-CCeE-EEccCCcCccCcc-eEEEE-CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEe
Q psy2979 302 GWHASTENTNRVECYHIA-ENTW-EYKSPMKEKRYRP-GIAVI-DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 302 G~~~~~~~~~~v~~yd~~-~~~W-~~~~~~~~~~~~~-~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 374 (400)
.. ...+++||+. +++. ............+ +++.- +|+||+..+ ..|.+||+.......+
T Consensus 190 ~~------~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~--------~~v~~~~~~g~~~~~~ 252 (296)
T 3e5z_A 190 TG------DNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASAG--------DGVHVLTPDGDELGRV 252 (296)
T ss_dssp TT------TTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEET--------TEEEEECTTSCEEEEE
T ss_pred CC------CCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEcC--------CeEEEECCCCCEEEEE
Confidence 33 4689999986 4554 1111111111111 23322 688998762 3689999986655544
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.15 Score=44.75 Aligned_cols=227 Identities=12% Similarity=0.075 Sum_probs=107.5
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcc----cceeeeEEEE-CCeEEEEEe------------ecCEEEEE
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPF----AISKHGLVVS-GRNTIYCLD------------IVDIVYVA 172 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~----~~~~~~~~~~-~~~~iyv~~------------~~~~~~~y 172 (400)
+.+++.+..+ ..+..+|+.+++-...-..+. ....+.++.. ++..+|+.. ....+..+
T Consensus 46 ~~l~v~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~ 120 (337)
T 1pby_B 46 RIAYATVNKS-----ESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120 (337)
T ss_dssp SEEEEEETTT-----TEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEE
T ss_pred CEEEEEeCCC-----CeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEE
Confidence 3566655422 468899988876543211111 0012334443 443366663 34789999
Q ss_pred ECCCCCeEEccCCCCcceeeeEEEE-CC-EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCC-cccccEEEEeCCEEE
Q psy2979 173 ASMHKILHSLGSLKFDFDVSGIAML-DG-FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKL-AVTSPAVVAHEGMLY 249 (400)
Q Consensus 173 d~~~~~w~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~-~~~~~~~~~~~~~iy 249 (400)
|+.+.+....-+.. ..-..++.. ++ .||+.+ ..+..||+.+++-...-+... .+ ......-+..+|
T Consensus 121 d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~--------~~i~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~ 189 (337)
T 1pby_B 121 DAETLSRRKAFEAP--RQITMLAWARDGSKLYGLG--------RDLHVMDPEAGTLVEDKPIQSWEA-ETYAQPDVLAVW 189 (337)
T ss_dssp ETTTTEEEEEEECC--SSCCCEEECTTSSCEEEES--------SSEEEEETTTTEEEEEECSTTTTT-TTBCCCBCCCCC
T ss_pred ECCCCcEEEEEeCC--CCcceeEECCCCCEEEEeC--------CeEEEEECCCCcEeeeeeccccCC-CceeCCCccEEe
Confidence 99877644322211 111222222 34 477662 358899998876543222211 11 111111122233
Q ss_pred EEcCccc----------cCC-C----C-cceEEEEeCCCCceeeccCCCCCceeeeEEEE-CC-eEEEEcCcCCCCCCCC
Q psy2979 250 VTGGAIL----------EDG-D----G-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DS-CIYVLGGWHASTENTN 311 (400)
Q Consensus 250 v~GG~~~----------~~~-~----~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~ 311 (400)
+.+.... ..+ . . ...+..||+.+.+-..+...+......+++.. ++ .+|+. ..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~---------~~ 260 (337)
T 1pby_B 190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA---------YN 260 (337)
T ss_dssp CCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE---------ES
T ss_pred eeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe---------CC
Confidence 3221100 000 0 0 12688999988765422211111111223332 44 45544 14
Q ss_pred eEEEEECCCCeEEEccCCcCccCcceEEEE-CC-EEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 312 RVECYHIAENTWEYKSPMKEKRYRPGIAVI-DG-KIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 312 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
.+..||+.+.+-...-..+ ....+++.. ++ .||+. +. ...|.+||+.+.+
T Consensus 261 ~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~-~~------~~~i~v~d~~~~~ 312 (337)
T 1pby_B 261 VLESFDLEKNASIKRVPLP--HSYYSVNVSTDGSTVWLG-GA------LGDLAAYDAETLE 312 (337)
T ss_dssp EEEEEETTTTEEEEEEECS--SCCCEEEECTTSCEEEEE-SB------SSEEEEEETTTCC
T ss_pred eEEEEECCCCcCcceecCC--CceeeEEECCCCCEEEEE-cC------CCcEEEEECcCCc
Confidence 7999999887643322221 122223322 44 46664 43 2579999998775
|
| >1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D | Back alignment and structure |
|---|
Probab=96.62 E-value=0.002 Score=49.76 Aligned_cols=69 Identities=17% Similarity=0.252 Sum_probs=52.6
Q ss_pred eEEEE-CCeEEehhhHHHhhcCccccccc------eeecCCCCHHHHH---HHhhhcc----------------------
Q psy2979 20 VTLCV-DGSKFPAHRVVLAASSPYFKVLE------TIRLPQLSPYFLH---DCVEQCA---------------------- 67 (400)
Q Consensus 20 v~l~~-~~~~~~~hr~vLaa~s~yf~~m~------~vrl~~l~~~~l~---~~i~~~~---------------------- 67 (400)
|+|.. ||+.|.+||.| |.+|+||+.|- .|.|+.++...|. ++.+.+.
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~w 82 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVW 82 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTCCSSEECTTCCHHHHHHHHHHHHHHTTCC-----------------HH
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCCCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhhHH
Confidence 67777 89999999998 89999999883 4899999998555 4444432
Q ss_pred ----cccCchhHHHHHHHHHhcCCCc
Q psy2979 68 ----IIKNNPQCAQLVEEAKLFHLLP 89 (400)
Q Consensus 68 ----l~~~~~~c~~~l~~a~~~~~~~ 89 (400)
+-.+...+.+++.+|..+++.+
T Consensus 83 D~~F~~vd~~~l~eLi~AAnyL~I~~ 108 (141)
T 1fs1_B 83 DQEFLKVDQGTLFELILAANYLDIKG 108 (141)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhhhH
Confidence 3445667788888887776544
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=96.60 E-value=0.35 Score=42.79 Aligned_cols=183 Identities=12% Similarity=0.089 Sum_probs=96.6
Q ss_pred EEEE-eecCEEEEEECCCCCeEEccCCCCcceeeeEE-EECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCc--
Q psy2979 160 IYCL-DIVDIVYVAASMHKILHSLGSLKFDFDVSGIA-MLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLA-- 235 (400)
Q Consensus 160 iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~-- 235 (400)
+|++ .....++.||+.+++...... +. .-.+++ .-++++|+... ..+.+||+.+++...+...+..
T Consensus 63 l~~~d~~~~~i~~~d~~~~~~~~~~~-~~--~v~~i~~~~dg~l~v~~~-------~gl~~~d~~~g~~~~~~~~~~~~~ 132 (326)
T 2ghs_A 63 AWWFNILERELHELHLASGRKTVHAL-PF--MGSALAKISDSKQLIASD-------DGLFLRDTATGVLTLHAELESDLP 132 (326)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEEC-SS--CEEEEEEEETTEEEEEET-------TEEEEEETTTCCEEEEECSSTTCT
T ss_pred EEEEECCCCEEEEEECCCCcEEEEEC-CC--cceEEEEeCCCeEEEEEC-------CCEEEEECCCCcEEEEeeCCCCCC
Confidence 6666 345689999998876554332 21 112222 24788887542 3489999999988776543321
Q ss_pred --ccccEEEEeCCEEEEEcCccccCCCC-cceEEEEeCCCCceeeccC-CCCCceeeeEEEE-CC-eEEEEcCcCCCCCC
Q psy2979 236 --VTSPAVVAHEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLAP-MLIPRSGAAICAL-DS-CIYVLGGWHASTEN 309 (400)
Q Consensus 236 --~~~~~~~~~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~~-~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~ 309 (400)
+....+..-+|++|+..... .... ...+++|| +.+...+.. ... ..+.+.. ++ .+|+....
T Consensus 133 ~~~~~~i~~d~~G~l~v~~~~~--~~~~~~~~l~~~~--~g~~~~~~~~~~~---~~~i~~s~dg~~lyv~~~~------ 199 (326)
T 2ghs_A 133 GNRSNDGRMHPSGALWIGTMGR--KAETGAGSIYHVA--KGKVTKLFADISI---PNSICFSPDGTTGYFVDTK------ 199 (326)
T ss_dssp TEEEEEEEECTTSCEEEEEEET--TCCTTCEEEEEEE--TTEEEEEEEEESS---EEEEEECTTSCEEEEEETT------
T ss_pred CCCCCCEEECCCCCEEEEeCCC--cCCCCceEEEEEe--CCcEEEeeCCCcc---cCCeEEcCCCCEEEEEECC------
Confidence 11222223367888753210 1111 45799998 455544321 111 1123322 44 57777543
Q ss_pred CCeEEEEECC--CC-e------EEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEe
Q psy2979 310 TNRVECYHIA--EN-T------WEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 310 ~~~v~~yd~~--~~-~------W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 374 (400)
...+++||.. ++ . +..+.. ....+....+ +|.+|+.... ...|.+||+....-..+
T Consensus 200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~~---~~~~p~gi~~d~~G~lwva~~~------~~~v~~~d~~g~~~~~i 266 (326)
T 2ghs_A 200 VNRLMRVPLDARTGLPTGKAEVFIDSTG---IKGGMDGSVCDAEGHIWNARWG------EGAVDRYDTDGNHIARY 266 (326)
T ss_dssp TCEEEEEEBCTTTCCBSSCCEEEEECTT---SSSEEEEEEECTTSCEEEEEET------TTEEEEECTTCCEEEEE
T ss_pred CCEEEEEEcccccCCcccCceEEEECCC---CCCCCCeeEECCCCCEEEEEeC------CCEEEEECCCCCEEEEE
Confidence 4589999975 44 2 222211 1111223333 5778886421 13689999955433333
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.36 Score=42.81 Aligned_cols=234 Identities=10% Similarity=-0.013 Sum_probs=107.2
Q ss_pred EEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCCcc
Q psy2979 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDF 189 (400)
Q Consensus 111 ~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r 189 (400)
..++.|+.+ ..+.+||..+++-...-.- ....-.+++.. ++..++.......+..+|..+++....-....+
T Consensus 45 ~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~- 117 (369)
T 3zwl_B 45 DLLFSCSKD-----SSASVWYSLNGERLGTLDG-HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVP- 117 (369)
T ss_dssp CEEEEEESS-----SCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSC-
T ss_pred CEEEEEeCC-----CEEEEEeCCCchhhhhhhh-cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCC-
Confidence 344555543 4678888877654321111 11112233333 334133335556788899887764433222111
Q ss_pred eeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCc----eEEccCCCC-----ccc--ccEEEE--eCCEEEEEcCcc
Q psy2979 190 DVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNE----WSYIEPMKL-----AVT--SPAVVA--HEGMLYVTGGAI 255 (400)
Q Consensus 190 ~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~----W~~~~~l~~-----~~~--~~~~~~--~~~~iyv~GG~~ 255 (400)
-.+++.. ++..++.++.+.......+..||..+.. +.....-+. ... ...... -+++.+++|+.
T Consensus 118 -v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 195 (369)
T 3zwl_B 118 -VKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHK- 195 (369)
T ss_dssp -EEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEET-
T ss_pred -eEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcC-
Confidence 1122222 4555555554322223457777665442 221111110 000 112222 25666677766
Q ss_pred ccCCCCcceEEEEeCCCC-ce-eeccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCc
Q psy2979 256 LEDGDGIEQVQRYNPKVN-QW-QDLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEK 332 (400)
Q Consensus 256 ~~~~~~~~~v~~yd~~~~-~W-~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~ 332 (400)
+ ..+..||..+. .- ..+..... .-.+++.. ++..++.|+. ...+..||..+.+....-..+.
T Consensus 196 --d----g~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~------d~~i~v~d~~~~~~~~~~~~~~- 260 (369)
T 3zwl_B 196 --D----GKISKYDVSNNYEYVDSIDLHEK--SISDMQFSPDLTYFITSSR------DTNSFLVDVSTLQVLKKYETDC- 260 (369)
T ss_dssp --T----SEEEEEETTTTTEEEEEEECCSS--CEEEEEECTTSSEEEEEET------TSEEEEEETTTCCEEEEEECSS-
T ss_pred --C----CEEEEEECCCCcEeEEEEecCCC--ceeEEEECCCCCEEEEecC------CceEEEEECCCCceeeeecCCC-
Confidence 4 37999998763 22 22211111 11122222 6666777765 4589999998776443322111
Q ss_pred cCcceEEEE--CCEEEEEcCccCCC--------CCCCeEEEEECCCCc
Q psy2979 333 RYRPGIAVI--DGKIYVLGGEEGWD--------GYHDSIECYDVDNDS 370 (400)
Q Consensus 333 ~~~~~~~~~--~~~lyv~GG~~~~~--------~~~~~v~~yd~~~~~ 370 (400)
....+.+ +++..++|+.++.. .....+..||..+.+
T Consensus 261 --~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 306 (369)
T 3zwl_B 261 --PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE 306 (369)
T ss_dssp --CEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCC
T ss_pred --CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCc
Confidence 1112222 45555555441211 112268888887764
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.046 Score=48.98 Aligned_cols=156 Identities=13% Similarity=0.185 Sum_probs=86.3
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccc-cEEEE--eCCEEEEEcCccccCCCCcceEEEEeCCCCc
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTS-PAVVA--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ 274 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~-~~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 274 (400)
++.+++.||.+ ..+..||..+++|.....+...... -..+. -++..++.|+. ++ .+..||..+..
T Consensus 27 ~g~~las~~~D-----~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~---D~----~v~iw~~~~~~ 94 (345)
T 3fm0_A 27 AGTLLASCGGD-----RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF---DA----TTCIWKKNQDD 94 (345)
T ss_dssp TSSCEEEEETT-----SCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEET---TS----CEEEEEECCC-
T ss_pred CCCEEEEEcCC-----CeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEEC---CC----cEEEEEccCCC
Confidence 56677777765 3588888888877543322221111 11222 26777788877 54 57778877776
Q ss_pred eeeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCe-EEEccCCcCccCcceEEEE--CCEEEEEc
Q psy2979 275 WQDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENT-WEYKSPMKEKRYRPGIAVI--DGKIYVLG 349 (400)
Q Consensus 275 W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~~~~~~~~~~--~~~lyv~G 349 (400)
+..+..+.........+.. ++.+++.|+. ...+..||..+.. +..+..+.........+.. ++++++.|
T Consensus 95 ~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~------D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~ 168 (345)
T 3fm0_A 95 FECVTTLEGHENEVKSVAWAPSGNLLATCSR------DKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASA 168 (345)
T ss_dssp EEEEEEECCCSSCEEEEEECTTSSEEEEEET------TSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEE
T ss_pred eEEEEEccCCCCCceEEEEeCCCCEEEEEEC------CCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEE
Confidence 6554433322111222222 6777777776 4567888876542 3322222211111222333 56677777
Q ss_pred CccCCCCCCCeEEEEECCCCcEEEecCC
Q psy2979 350 GEEGWDGYHDSIECYDVDNDSWEIMSHL 377 (400)
Q Consensus 350 G~~~~~~~~~~v~~yd~~~~~W~~~~~~ 377 (400)
+. + ..|..||..++.|.....+
T Consensus 169 s~-d-----~~i~~w~~~~~~~~~~~~~ 190 (345)
T 3fm0_A 169 SY-D-----DTVKLYREEEDDWVCCATL 190 (345)
T ss_dssp ET-T-----SCEEEEEEETTEEEEEEEE
T ss_pred eC-C-----CcEEEEEecCCCEEEEEEe
Confidence 76 2 3578899888888765444
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.22 Score=43.81 Aligned_cols=178 Identities=16% Similarity=0.260 Sum_probs=94.3
Q ss_pred EECCeEEEEEeecCEEEEEECC-CCCeEEccCCCCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCC-ceEEcc
Q psy2979 154 VSGRNTIYCLDIVDIVYVAASM-HKILHSLGSLKFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKN-EWSYIE 230 (400)
Q Consensus 154 ~~~~~~iyv~~~~~~~~~yd~~-~~~w~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~ 230 (400)
..++. +|+......++.||+. ...|....+.+ ...+.+.. ++.||+.. .+ ..+..||+... .|....
T Consensus 105 ~~~~~-l~v~t~~~~l~~~d~~g~~~~~~~~~~~---~~~~~~~~~~g~l~vgt-~~-----~~l~~~d~~g~~~~~~~~ 174 (330)
T 3hxj_A 105 IFEDI-LYVTSMDGHLYAINTDGTEKWRFKTKKA---IYATPIVSEDGTIYVGS-ND-----NYLYAINPDGTEKWRFKT 174 (330)
T ss_dssp EETTE-EEEECTTSEEEEECTTSCEEEEEECSSC---CCSCCEECTTSCEEEEC-TT-----SEEEEECTTSCEEEEEEC
T ss_pred EECCE-EEEEecCCEEEEEcCCCCEEEEEcCCCc---eeeeeEEcCCCEEEEEc-CC-----CEEEEECCCCCEeEEEec
Confidence 34777 8887666789999988 23365433211 11222333 66777742 21 45889998822 365432
Q ss_pred CCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCC-CceeeccCCCCCceeeeEEEE-CCeEEEEcCcCCCCC
Q psy2979 231 PMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKV-NQWQDLAPMLIPRSGAAICAL-DSCIYVLGGWHASTE 308 (400)
Q Consensus 231 ~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~-~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~ 308 (400)
+.......+..-++.||+.. . .+++||+.. ..|+...+... ..+.+.. ++.||+...
T Consensus 175 --~~~~~~~~~~d~~g~l~v~t-~---------~l~~~d~~g~~~~~~~~~~~~---~~~~~~~~~g~l~v~t~------ 233 (330)
T 3hxj_A 175 --NDAITSAASIGKDGTIYFGS-D---------KVYAINPDGTEKWNFYAGYWT---VTRPAISEDGTIYVTSL------ 233 (330)
T ss_dssp --SSCCCSCCEECTTCCEEEES-S---------SEEEECTTSCEEEEECCSSCC---CSCCEECTTSCEEEEET------
T ss_pred --CCCceeeeEEcCCCEEEEEe-C---------EEEEECCCCcEEEEEccCCcc---eeceEECCCCeEEEEcC------
Confidence 22222222222478888765 2 478888543 23665432211 1222333 557887642
Q ss_pred CCCeEEEEECCCCe-EEEccCCcCccCcceEEEE-CCEEEEEcCccCCCCCCCeEEEEECCCC-cEEE
Q psy2979 309 NTNRVECYHIAENT-WEYKSPMKEKRYRPGIAVI-DGKIYVLGGEEGWDGYHDSIECYDVDND-SWEI 373 (400)
Q Consensus 309 ~~~~v~~yd~~~~~-W~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~-~W~~ 373 (400)
...+.+||+.... |..-...+ .. ...+.. ++.||+.... ..+++||+... .|+.
T Consensus 234 -~~gl~~~~~~g~~~~~~~~~~~--~~-~~~~~~~~g~l~v~t~~-------ggl~~~d~~g~~~~~~ 290 (330)
T 3hxj_A 234 -DGHLYAINPDGTEKWRFKTGKR--IE-SSPVIGNTDTIYFGSYD-------GHLYAINPDGTEKWNF 290 (330)
T ss_dssp -TTEEEEECTTSCEEEEEECSSC--CC-SCCEECTTSCEEEECTT-------CEEEEECTTSCEEEEE
T ss_pred -CCeEEEECCCCCEeEEeeCCCC--cc-ccceEcCCCeEEEecCC-------CCEEEECCCCcEEEEE
Confidence 2468888875554 54432211 11 122233 6788875432 36899998543 3554
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.22 Score=44.29 Aligned_cols=182 Identities=10% Similarity=0.006 Sum_probs=86.4
Q ss_pred cCEEEEEECCCCCeEEccCCCCcc-eeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE
Q psy2979 166 VDIVYVAASMHKILHSLGSLKFDF-DVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA 243 (400)
Q Consensus 166 ~~~~~~yd~~~~~w~~~~~~~~~r-~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~ 243 (400)
...+..+|..+++-.. .+.... .-.+++.. ++..++.|+.+ ..+..||..+++....-..+.+.. .....
T Consensus 53 dg~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~v~-~~~~~ 124 (369)
T 3zwl_B 53 DSSASVWYSLNGERLG--TLDGHTGTIWSIDVDCFTKYCVTGSAD-----YSIKLWDVSNGQCVATWKSPVPVK-RVEFS 124 (369)
T ss_dssp SSCEEEEETTTCCEEE--EECCCSSCEEEEEECTTSSEEEEEETT-----TEEEEEETTTCCEEEEEECSSCEE-EEEEC
T ss_pred CCEEEEEeCCCchhhh--hhhhcCCcEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCcEEEEeecCCCeE-EEEEc
Confidence 3456677776654322 111111 11122222 45666667654 468889988876544332222211 11112
Q ss_pred eCCEEEEEcCccccCCCC-cceEEEEeCCCCc----eeeccCCCCC-----c--eeeeEEEE--CCeEEEEcCcCCCCCC
Q psy2979 244 HEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQ----WQDLAPMLIP-----R--SGAAICAL--DSCIYVLGGWHASTEN 309 (400)
Q Consensus 244 ~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~----W~~~~~~~~~-----r--~~~~~~~~--~~~iyv~GG~~~~~~~ 309 (400)
-++..+++++. +... ...+..||..+.. +......+.. . .....+.. ++..+++|+.
T Consensus 125 ~~~~~l~~~~~---~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------ 195 (369)
T 3zwl_B 125 PCGNYFLAILD---NVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHK------ 195 (369)
T ss_dssp TTSSEEEEEEC---CBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEET------
T ss_pred cCCCEEEEecC---CccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcC------
Confidence 25555555554 2111 2367777765442 1111111100 0 01122222 5666777765
Q ss_pred CCeEEEEECCC-CeEE-EccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEE
Q psy2979 310 TNRVECYHIAE-NTWE-YKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEI 373 (400)
Q Consensus 310 ~~~v~~yd~~~-~~W~-~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~ 373 (400)
...+..||..+ ..-. .+... ......+.+ +++.++.|+. + ..|.+||..+.+...
T Consensus 196 dg~i~i~d~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~-d-----~~i~v~d~~~~~~~~ 254 (369)
T 3zwl_B 196 DGKISKYDVSNNYEYVDSIDLH---EKSISDMQFSPDLTYFITSSR-D-----TNSFLVDVSTLQVLK 254 (369)
T ss_dssp TSEEEEEETTTTTEEEEEEECC---SSCEEEEEECTTSSEEEEEET-T-----SEEEEEETTTCCEEE
T ss_pred CCEEEEEECCCCcEeEEEEecC---CCceeEEEECCCCCEEEEecC-C-----ceEEEEECCCCceee
Confidence 46899999987 3322 22211 111222333 5666677765 2 478899988765443
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.35 Score=41.81 Aligned_cols=219 Identities=10% Similarity=0.057 Sum_probs=98.2
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCC-eEEccCCCCcceeeeEEEECCEEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKI-LHSLGSLKFDFDVSGIAMLDGFVY 202 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~-w~~~~~~~~~r~~~~~~~~~~~iy 202 (400)
..+.+||..+++........ ...-.+++.. ++..+++......+..++..... ...+..+............++..+
T Consensus 39 g~v~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l 117 (313)
T 3odt_A 39 GTVRLWSKDDQWLGTVVYTG-QGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVV 117 (313)
T ss_dssp SEEEEEEESSSEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEE
T ss_pred CcEEEEECCCCEEEEEeecC-CccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEE
Confidence 46788887665433221111 1112233333 33313333444556666655432 111111111111112222355566
Q ss_pred EEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCC
Q psy2979 203 AVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPML 282 (400)
Q Consensus 203 v~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~ 282 (400)
+.|+.+ ..+..||....... +.....+.........++..++.|+. ++ .+..||.... -.......
T Consensus 118 ~~~~~d-----~~i~~~d~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~---d~----~i~i~d~~~~-~~~~~~~~ 183 (313)
T 3odt_A 118 ISGSWD-----KTAKVWKEGSLVYN-LQAHNASVWDAKVVSFSENKFLTASA---DK----TIKLWQNDKV-IKTFSGIH 183 (313)
T ss_dssp EEEETT-----SEEEEEETTEEEEE-EECCSSCEEEEEEEETTTTEEEEEET---TS----CEEEEETTEE-EEEECSSC
T ss_pred EEEeCC-----CCEEEEcCCcEEEe-cccCCCceeEEEEccCCCCEEEEEEC---CC----CEEEEecCce-EEEEeccC
Confidence 666654 35777882222221 11111122111222226667777776 44 6888883322 22222211
Q ss_pred CCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCe
Q psy2979 283 IPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDS 360 (400)
Q Consensus 283 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~ 360 (400)
..........-++. ++.|+. ...+..||..+.+-... +.........+.+ +++ ++.|+. ...
T Consensus 184 ~~~i~~~~~~~~~~-~~~~~~------dg~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~-l~~~~~------dg~ 247 (313)
T 3odt_A 184 NDVVRHLAVVDDGH-FISCSN------DGLIKLVDMHTGDVLRT--YEGHESFVYCIKLLPNGD-IVSCGE------DRT 247 (313)
T ss_dssp SSCEEEEEEEETTE-EEEEET------TSEEEEEETTTCCEEEE--EECCSSCEEEEEECTTSC-EEEEET------TSE
T ss_pred cccEEEEEEcCCCe-EEEccC------CCeEEEEECCchhhhhh--hhcCCceEEEEEEecCCC-EEEEec------CCE
Confidence 12222222333666 666665 56899999887653221 1111111222333 454 455554 246
Q ss_pred EEEEECCCCcEEEe
Q psy2979 361 IECYDVDNDSWEIM 374 (400)
Q Consensus 361 v~~yd~~~~~W~~~ 374 (400)
|.+||..+++....
T Consensus 248 v~iwd~~~~~~~~~ 261 (313)
T 3odt_A 248 VRIWSKENGSLKQV 261 (313)
T ss_dssp EEEECTTTCCEEEE
T ss_pred EEEEECCCCceeEE
Confidence 88999888764443
|
| >1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.25 Score=40.17 Aligned_cols=144 Identities=12% Similarity=0.091 Sum_probs=84.5
Q ss_pred eEEEECCEEEEEcccCCCCCCCeEEEEeCCCC--ceE--Ec----cCCCCcccccEEEEe--CCEEEEEcCccccCCCCc
Q psy2979 193 GIAMLDGFVYAVGGWDGSCRLDSVERYDPTKN--EWS--YI----EPMKLAVTSPAVVAH--EGMLYVTGGAILEDGDGI 262 (400)
Q Consensus 193 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~--~~----~~l~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~ 262 (400)
+++.+++++|++=| ..+++++.... ... .+ +.||... . ++... ++++|++-|.
T Consensus 11 Ai~~~~g~~yfFkg-------~~~Wr~~~~~~~~~~~p~~Is~~w~glP~~I-D-Aa~~~~~~~~~yfFkG~-------- 73 (195)
T 1itv_A 11 AIAEIGNQLYLFKD-------GKYWRFSEGRGSRPQGPFLIADKWPALPRKL-D-SVFEEPLSKKLFFFSGR-------- 73 (195)
T ss_dssp EEEEETTEEEEEET-------TEEEEECCSSSCCCEEEEEHHHHCTTSCSSC-S-EEEECTTTCCEEEEETT--------
T ss_pred EEEEeCCEEEEEEC-------CEEEEEECCccccCCCcEEhhhccCCCCCCc-c-EEEEECCCCeEEEEeCC--------
Confidence 35557999999977 56788876542 221 12 3455422 1 23332 7899999887
Q ss_pred ceEEEEeCCCCce-eeccC--CCCC--ceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEE-----cc-CCc-
Q psy2979 263 EQVQRYNPKVNQW-QDLAP--MLIP--RSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEY-----KS-PMK- 330 (400)
Q Consensus 263 ~~v~~yd~~~~~W-~~~~~--~~~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~-----~~-~~~- 330 (400)
..|+|+..+..- ..+.. +|.. .-.++....++++|++-|. ..++||..+++=.. +. ..+
T Consensus 74 -~yw~~~~~~~~~Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg~--------~ywr~d~~~~~~~~gyPr~i~~~w~G 144 (195)
T 1itv_A 74 -QVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSGR--------RLWRFDVKAQMVDPRSASEVDRMFPG 144 (195)
T ss_dssp -EEEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEETT--------EEEEEETTTTEECGGGCEEHHHHSTT
T ss_pred -EEEEEcCCccCCCEEeeecccCCCccceeEEEEcCCCeEEEEeCC--------EEEEEeCCcccccCCCccChhhcCCC
Confidence 688888542111 01111 2221 2223333237899999763 79999988764211 11 111
Q ss_pred CccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 331 EKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 331 ~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
.+...-++...+|++|++-|. ..|+||..+..
T Consensus 145 vp~~idaa~~~~g~~Yffkg~--------~y~~~~~~~~~ 176 (195)
T 1itv_A 145 VPLDTHDVFQFREKAYFCQDR--------FYWRVSSRSEL 176 (195)
T ss_dssp SCSSCSEEEEETTEEEEEETT--------EEEEEECCTTC
T ss_pred CCCCCCEEEEeCCeEEEEeCC--------EEEEEECCccE
Confidence 122334455568999999886 68999988765
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0087 Score=54.21 Aligned_cols=147 Identities=12% Similarity=0.136 Sum_probs=75.2
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe--CCEEEEEcCccccCCCCcceEEEEeCCCCc-
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH--EGMLYVTGGAILEDGDGIEQVQRYNPKVNQ- 274 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~- 274 (400)
++.+++.|+.+ ..+..||..++.|..+..+......-....+ ++..++.|+. ++ .+..||..+..
T Consensus 22 ~g~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~---d~----~v~vwd~~~~~~ 89 (377)
T 3dwl_C 22 QRTEFVTTTAT-----NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQ---DR----NAYVYEKRPDGT 89 (377)
T ss_dssp SSSEEECCCSS-----SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEET---TS----SEEEC------C
T ss_pred CCCEEEEecCC-----CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeC---CC----eEEEEEcCCCCc
Confidence 45666666654 3577888888888777666533322222222 5677777776 44 68888888776
Q ss_pred eeeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCe-EEEccCCcC-ccCcceEEEE--CCEEEEE
Q psy2979 275 WQDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENT-WEYKSPMKE-KRYRPGIAVI--DGKIYVL 348 (400)
Q Consensus 275 W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~-~~~~~~~~~~--~~~lyv~ 348 (400)
|.....+.........+.. ++..++.|+. ...+..||..+++ |.....+.. .......+.+ ++++++.
T Consensus 90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 163 (377)
T 3dwl_C 90 WKQTLVLLRLNRAATFVRWSPNEDKFAVGSG------ARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAA 163 (377)
T ss_dssp CCCEEECCCCSSCEEEEECCTTSSCCEEEES------SSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEE
T ss_pred eeeeeEecccCCceEEEEECCCCCEEEEEec------CCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEE
Confidence 5444333222222222222 5667777765 4568888887664 322222222 1112223333 5677777
Q ss_pred cCccCCCCCCCeEEEEECCC
Q psy2979 349 GGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 349 GG~~~~~~~~~~v~~yd~~~ 368 (400)
|+. + ..|.+||..+
T Consensus 164 ~~~-d-----~~i~iwd~~~ 177 (377)
T 3dwl_C 164 GCA-D-----RKAYVLSAYV 177 (377)
T ss_dssp EES-S-----SCEEEEEECC
T ss_pred EeC-C-----CEEEEEEEEe
Confidence 776 2 3578888753
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.27 Score=43.36 Aligned_cols=151 Identities=15% Similarity=0.142 Sum_probs=73.8
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEE-eecCEEEEEECCCCCeEEccCCCC
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCL-DIVDIVYVAASMHKILHSLGSLKF 187 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~ 187 (400)
+.+++.++.+ ..+.++|+.+++....-..+.....+.++.. ++..+|+. .....++.+|+.+++....-..+.
T Consensus 11 ~~~~v~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~ 85 (349)
T 1jmx_B 11 HEYMIVTNYP-----NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS 85 (349)
T ss_dssp CEEEEEEETT-----TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC
T ss_pred CEEEEEeCCC-----CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccc
Confidence 4566665543 5788999988875433222321122344444 34326666 345689999998876543222211
Q ss_pred -----cceeeeEEEE-CC-EEEEEccc---CCC---CCCCeEEEEeCCCCceEE-ccCCCCcccccEE-EEeCCEEEEEc
Q psy2979 188 -----DFDVSGIAML-DG-FVYAVGGW---DGS---CRLDSVERYDPTKNEWSY-IEPMKLAVTSPAV-VAHEGMLYVTG 252 (400)
Q Consensus 188 -----~r~~~~~~~~-~~-~iyv~GG~---~~~---~~~~~v~~yd~~~~~W~~-~~~l~~~~~~~~~-~~~~~~iyv~G 252 (400)
...-..++.. ++ .+|+.+.. ... .....+..||+.+++-.. +...+.+..-.++ ..-++++|+.+
T Consensus 86 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~l~~~~ 165 (349)
T 1jmx_B 86 VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG 165 (349)
T ss_dssp STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES
T ss_pred ccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCcEEEcc
Confidence 1111222322 34 56665421 000 012578899988743211 1111111222222 23366677743
Q ss_pred CccccCCCCcceEEEEeCCCCce
Q psy2979 253 GAILEDGDGIEQVQRYNPKVNQW 275 (400)
Q Consensus 253 G~~~~~~~~~~~v~~yd~~~~~W 275 (400)
+ .+..+|+.+.+-
T Consensus 166 ~----------~i~~~d~~~~~~ 178 (349)
T 1jmx_B 166 P----------DIYKMDVKTGKY 178 (349)
T ss_dssp S----------SEEEECTTTCCE
T ss_pred C----------cEEEEeCCCCce
Confidence 3 377777766553
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.49 Score=43.10 Aligned_cols=198 Identities=14% Similarity=0.103 Sum_probs=111.1
Q ss_pred eecCEEEEEECCCCCeEEccCCCCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEE
Q psy2979 164 DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAV 241 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~ 241 (400)
...+.+..+++.......+.+. ...-.+++.. ++.||+.-- ....+.++++.....+.+........ .++
T Consensus 93 ~~~~~I~~i~~~~~~~~~~~~~--~~~~~gl~~d~~~~~ly~~D~-----~~~~I~r~~~~g~~~~~~~~~~~~~p-~gl 164 (386)
T 3v65_B 93 ANRIDIRQVLPHRSEYTLLLNN--LENAIALDFHHRRELVFWSDV-----TLDRILRANLNGSNVEEVVSTGLESP-GGL 164 (386)
T ss_dssp ECBSCEEEECTTSCCCEEEECS--CSCEEEEEEETTTTEEEEEET-----TTTEEEEEETTSCCEEEEECSSCSCC-CCE
T ss_pred ecCccceeeccCCCcEEEEecC--CCccEEEEEecCCCeEEEEeC-----CCCcEEEEecCCCCcEEEEeCCCCCc-cEE
Confidence 3446778888887766554431 1222334433 578998742 23579999998876655432111111 233
Q ss_pred EE--eCCEEEEEcCccccCCCCcceEEEEeCCCCceeecc--CCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEE
Q psy2979 242 VA--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLA--PMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVEC 315 (400)
Q Consensus 242 ~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~ 315 (400)
++ .++.||+.... ...++++++....-+.+. .+..| .++++- ++.||+..-.. ...+++
T Consensus 165 avd~~~g~lY~~d~~-------~~~I~~~~~dg~~~~~l~~~~l~~P---~giavdp~~g~ly~td~~~-----~~~I~r 229 (386)
T 3v65_B 165 AVDWVHDKLYWTDSG-------TSRIEVANLDGAHRKVLLWQSLEKP---RAIALHPMEGTIYWTDWGN-----TPRIEA 229 (386)
T ss_dssp EEETTTTEEEEEETT-------TTEEEECBTTSCSCEEEECSSCSCE---EEEEEETTTTEEEEEECSS-----SCEEEE
T ss_pred EEEeCCCeEEEEcCC-------CCeEEEEeCCCCceEEeecCCCCCC---cEEEEEcCCCeEEEeccCC-----CCEEEE
Confidence 33 47899998654 357888888765433332 23333 233333 68899886321 368999
Q ss_pred EECCCCeEEEccCCcCccCcceEEEE---CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEec--CCCCCCCceeeEEEc
Q psy2979 316 YHIAENTWEYKSPMKEKRYRPGIAVI---DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMS--HLPSARSWLGCVPLQ 390 (400)
Q Consensus 316 yd~~~~~W~~~~~~~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~r~~~~~~~~~ 390 (400)
+++....-..+.. .....+...++ +++||+.-.. .+.|+++|+....-+.+. .++.| .++++.+
T Consensus 230 ~~~dG~~~~~~~~--~~~~~PnGlavd~~~~~lY~aD~~------~~~I~~~d~dG~~~~~~~~~~~~~P---~giav~~ 298 (386)
T 3v65_B 230 SSMDGSGRRIIAD--THLFWPNGLTIDYAGRRMYWVDAK------HHVIERANLDGSHRKAVISQGLPHP---FAITVFE 298 (386)
T ss_dssp EETTSCSCEEEEC--SSCSCEEEEEEEGGGTEEEEEETT------TTEEEEECTTSCSCEEEECSSCSSE---EEEEEET
T ss_pred EeCCCCCcEEEEE--CCCCCeeeEEEeCCCCEEEEEECC------CCEEEEEeCCCCeeEEEEECCCCCc---eEEEEEC
Confidence 9987654333321 11122333333 6899998543 368999998764433332 23222 5666655
Q ss_pred ccccc
Q psy2979 391 IHKSQ 395 (400)
Q Consensus 391 ~~~~~ 395 (400)
+..|+
T Consensus 299 ~~ly~ 303 (386)
T 3v65_B 299 DSLYW 303 (386)
T ss_dssp TEEEE
T ss_pred CEEEE
Confidence 54443
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.17 Score=43.31 Aligned_cols=184 Identities=11% Similarity=-0.026 Sum_probs=96.3
Q ss_pred CEEEEEECCCCCeEEccCCCCcceeeeEEE-ECCEEEEEcccCCCCCCCeEEEEeCCC-CceEEccCCCC-cccccEEEE
Q psy2979 167 DIVYVAASMHKILHSLGSLKFDFDVSGIAM-LDGFVYAVGGWDGSCRLDSVERYDPTK-NEWSYIEPMKL-AVTSPAVVA 243 (400)
Q Consensus 167 ~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~-~~W~~~~~l~~-~~~~~~~~~ 243 (400)
..++.+|+.+++...+..... .-.+++. -+++.+++++ + ..+..||+.+ ++...+...+. .........
T Consensus 22 ~~i~~~d~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~-~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 22 SSIEIFNIRTRKMRVVWQTPE--LFEAPNWSPDGKYLLLNS-E-----GLLYRLSLAGDPSPEKVDTGFATICNNDHGIS 93 (297)
T ss_dssp EEEEEEETTTTEEEEEEEESS--CCEEEEECTTSSEEEEEE-T-----TEEEEEESSSCCSCEECCCTTCCCBCSCCEEC
T ss_pred eeEEEEeCCCCceeeeccCCc--ceEeeEECCCCCEEEEEc-C-----CeEEEEeCCCCCCceEeccccccccccceEEC
Confidence 457778887776554433211 1112222 2455555554 1 4789999998 87766654332 222222233
Q ss_pred eCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCe-EEEEcCcCCCCCCCCeEEEEECCCC
Q psy2979 244 HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSC-IYVLGGWHASTENTNRVECYHIAEN 321 (400)
Q Consensus 244 ~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~v~~yd~~~~ 321 (400)
-+++.+++++. +......++.+|..+.....+..... ...+... +++ |++.++.++ ...++.++..++
T Consensus 94 pdg~~l~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~spdg~~l~~~~~~~~----~~~l~~~~~~~~ 163 (297)
T 2ojh_A 94 PDGALYAISDK---VEFGKSAIYLLPSTGGTPRLMTKNLP---SYWHGWSPDGKSFTYCGIRDQ----VFDIYSMDIDSG 163 (297)
T ss_dssp TTSSEEEEEEC---TTTSSCEEEEEETTCCCCEECCSSSS---EEEEEECTTSSEEEEEEEETT----EEEEEEEETTTC
T ss_pred CCCCEEEEEEe---CCCCcceEEEEECCCCceEEeecCCC---ccceEECCCCCEEEEEECCCC----ceEEEEEECCCC
Confidence 35655555553 21114589999988776655543222 1222222 454 444454321 336788888877
Q ss_pred eEEEccCCcCccCcceEEEE--CCE-EEEEcCccCCCCCCCeEEEEECCCCcEEEec
Q psy2979 322 TWEYKSPMKEKRYRPGIAVI--DGK-IYVLGGEEGWDGYHDSIECYDVDNDSWEIMS 375 (400)
Q Consensus 322 ~W~~~~~~~~~~~~~~~~~~--~~~-lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 375 (400)
....+...+.. ...... +++ |++.+.. + ....+|.+++.+.....+.
T Consensus 164 ~~~~~~~~~~~---~~~~~~s~dg~~l~~~~~~-~---~~~~i~~~~~~~~~~~~~~ 213 (297)
T 2ojh_A 164 VETRLTHGEGR---NDGPDYSPDGRWIYFNSSR-T---GQMQIWRVRVDGSSVERIT 213 (297)
T ss_dssp CEEECCCSSSC---EEEEEECTTSSEEEEEECT-T---SSCEEEEEETTSSCEEECC
T ss_pred cceEcccCCCc---cccceECCCCCEEEEEecC-C---CCccEEEECCCCCCcEEEe
Confidence 77665543321 122223 454 5554433 2 2467888888777766654
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.48 Score=47.09 Aligned_cols=234 Identities=8% Similarity=-0.107 Sum_probs=116.8
Q ss_pred ccceEEEEEcCCCceEEccCCcccc-----------------------eeeeEEEE-CCeEEEEEeecCEEEEEECCCC-
Q psy2979 123 VLRSVEGFCVKTKVWKTLSCLPFAI-----------------------SKHGLVVS-GRNTIYCLDIVDIVYVAASMHK- 177 (400)
Q Consensus 123 ~~~~~~~yd~~~~~w~~~~~~~~~~-----------------------~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~- 177 (400)
....+..+|..+++...+....... .-...+.. ++. .+++.....++.+|..++
T Consensus 62 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~-~l~~~~~~~i~~~d~~~~~ 140 (741)
T 2ecf_A 62 NQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQ-RLLFPLGGELYLYDLKQEG 140 (741)
T ss_dssp TEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSS-EEEEEETTEEEEEESSSCS
T ss_pred cccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCC-EEEEEeCCcEEEEECCCCC
Confidence 3458899999988876654322110 11233333 455 444433488999999877
Q ss_pred --CeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcc----------------ccc
Q psy2979 178 --ILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAV----------------TSP 239 (400)
Q Consensus 178 --~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~----------------~~~ 239 (400)
....+...... .......-+++..+++.. ..++.+|..+++...+....... ...
T Consensus 141 ~~~~~~l~~~~~~-~~~~~~SPDG~~la~~~~------~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~ 213 (741)
T 2ecf_A 141 KAAVRQLTHGEGF-ATDAKLSPKGGFVSFIRG------RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTG 213 (741)
T ss_dssp TTSCCBCCCSSSC-EEEEEECTTSSEEEEEET------TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCS
T ss_pred cceEEEcccCCcc-cccccCCCCCCEEEEEeC------CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccc
Confidence 54443332111 111111125543333321 36999999988776664322210 111
Q ss_pred EEEEeCCEEEEEcCccccCC---------------------------CC--cceEEEEeCCC-CceeeccCC-CCCc-ee
Q psy2979 240 AVVAHEGMLYVTGGAILEDG---------------------------DG--IEQVQRYNPKV-NQWQDLAPM-LIPR-SG 287 (400)
Q Consensus 240 ~~~~~~~~iyv~GG~~~~~~---------------------------~~--~~~v~~yd~~~-~~W~~~~~~-~~~r-~~ 287 (400)
..-.-+++..+++.. ++ .. ...++.+|..+ .+-..+... .... ..
T Consensus 214 ~~~SpDg~~l~~~~~---d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 290 (741)
T 2ecf_A 214 YWWAPDDSAIAYARI---DESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLA 290 (741)
T ss_dssp EEECTTSSCEEEEEE---ECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEE
T ss_pred eEECCCCCEEEEEEE---cCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEE
Confidence 122234543333322 11 00 23788889877 665444322 1111 12
Q ss_pred eeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCcc----CcceEEEECCEEEEEcCccCCCCCCCeEEE
Q psy2979 288 AAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKR----YRPGIAVIDGKIYVLGGEEGWDGYHDSIEC 363 (400)
Q Consensus 288 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~----~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~ 363 (400)
.... -+++.++++..+.... ...++.+|+.+++...+....... .......-+|++++.+.. ++ ...+|.
T Consensus 291 ~~~~-pDg~~l~~~~~~~~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~-~g---~~~l~~ 364 (741)
T 2ecf_A 291 RVNW-RDPQHLSFQRQSRDQK-KLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSER-TG---FQHLYR 364 (741)
T ss_dssp EEEE-EETTEEEEEEEETTSS-EEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECT-TS---SCEEEE
T ss_pred EEEe-CCCCEEEEEEecccCC-eEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecC-CC---ccEEEE
Confidence 2223 4555444443322222 568999999998876654322111 111122226776666654 22 357888
Q ss_pred EECCCCcEEEe
Q psy2979 364 YDVDNDSWEIM 374 (400)
Q Consensus 364 yd~~~~~W~~~ 374 (400)
+|..+. ++.+
T Consensus 365 ~~~~~~-~~~l 374 (741)
T 2ecf_A 365 IDSKGK-AAAL 374 (741)
T ss_dssp ECSSSC-EEES
T ss_pred EcCCCC-eeee
Confidence 887665 5554
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.5 Score=43.09 Aligned_cols=194 Identities=13% Similarity=0.113 Sum_probs=108.3
Q ss_pred EEEEeecCEEEEEECCC--CCeEEccCCCCcceeeeEEEE---CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccC---
Q psy2979 160 IYCLDIVDIVYVAASMH--KILHSLGSLKFDFDVSGIAML---DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEP--- 231 (400)
Q Consensus 160 iyv~~~~~~~~~yd~~~--~~w~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~--- 231 (400)
||+.. ..-++.++... .+|....+......-.+++.- .+.||+.+.. +. .-..+++.+....+|+.+..
T Consensus 25 l~vgt-~~Gl~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~-g~-~g~gl~~s~D~G~tW~~~~~~~~ 101 (394)
T 3b7f_A 25 LLVAT-IKGAWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAART-GH-LGPTVFRSDDGGGNWTEATRPPA 101 (394)
T ss_dssp EEEEE-TTEEEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC----CCEEEEEESSTTSCCEECSBCCC
T ss_pred EEEEe-cCceEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecC-CC-CCccEEEeCCCCCCceECCcccc
Confidence 55543 24467777654 689876422222233344433 4678876532 11 01247777777889998853
Q ss_pred CCCcc---------cccEEEEe----CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCC---CC------------
Q psy2979 232 MKLAV---------TSPAVVAH----EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPM---LI------------ 283 (400)
Q Consensus 232 l~~~~---------~~~~~~~~----~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~---~~------------ 283 (400)
++... .-.+++.. .+.||+.+.. ..+++.+-...+|+.+... |.
T Consensus 102 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~--------ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~ 173 (394)
T 3b7f_A 102 FNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSP--------QGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGT 173 (394)
T ss_dssp CCCCC----CCCCCEEEEEEECCTTSTTCEEEEEET--------TEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----
T ss_pred CCCcccccccccccceeEEEeCCCCCCCEEEEEecC--------CcEEEEcCCCCCeEECcCccCCccccccccccccCC
Confidence 22111 01123332 5778875422 3689998888999988532 21
Q ss_pred --CceeeeEEEE---CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCC------cCc-----cCcceEEEE-C--CE
Q psy2979 284 --PRSGAAICAL---DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPM------KEK-----RYRPGIAVI-D--GK 344 (400)
Q Consensus 284 --~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~------~~~-----~~~~~~~~~-~--~~ 344 (400)
....+.++.. .+.||+... ...+++.+-...+|+.+... |.. ...+.++.. . +.
T Consensus 174 ~~~~~i~~i~~d~~~~~~l~vg~~-------~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~ 246 (394)
T 3b7f_A 174 PDGPKMHSILVDPRDPKHLYIGMS-------SGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDI 246 (394)
T ss_dssp CCCCEEEEEEECTTCTTCEEEEEE-------TBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTE
T ss_pred CCCCceeEEEECCCCCCEEEEEEC-------CCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCE
Confidence 1122344433 356777643 23588888788899987531 211 112222222 2 67
Q ss_pred EEEEcCccCCCCCCCeEEEEECCCCcEEEecC-CCC
Q psy2979 345 IYVLGGEEGWDGYHDSIECYDVDNDSWEIMSH-LPS 379 (400)
Q Consensus 345 lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~-~~~ 379 (400)
||+..+ ..+++++-...+|+.+.. +|.
T Consensus 247 l~vg~~--------~gl~~s~D~G~tW~~~~~~l~~ 274 (394)
T 3b7f_A 247 LYQQNH--------CGIYRMDRREGVWKRIGDAMPR 274 (394)
T ss_dssp EEEEET--------TEEEEEETTTTEEECGGGGSCT
T ss_pred EEEEcC--------CeEEEeCCCCCcceECCCCCCC
Confidence 777432 358899988999999854 554
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.17 Score=45.15 Aligned_cols=167 Identities=11% Similarity=0.125 Sum_probs=86.0
Q ss_pred CEEEEEECCCCCeEEccCCC--CcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE
Q psy2979 167 DIVYVAASMHKILHSLGSLK--FDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA 243 (400)
Q Consensus 167 ~~~~~yd~~~~~w~~~~~~~--~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~ 243 (400)
..+..+|..+++|.....+. ....-.+++.. ++..++.|+.++ .+..||..++.+..+..+......-..+.
T Consensus 38 ~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~-----~v~iw~~~~~~~~~~~~~~~h~~~v~~v~ 112 (345)
T 3fm0_A 38 RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA-----TTCIWKKNQDDFECVTTLEGHENEVKSVA 112 (345)
T ss_dssp SCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS-----CEEEEEECCC-EEEEEEECCCSSCEEEEE
T ss_pred CeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC-----cEEEEEccCCCeEEEEEccCCCCCceEEE
Confidence 45666776666664322211 11111222222 566777777653 47778877776655443332111112222
Q ss_pred --eCCEEEEEcCccccCCCCcceEEEEeCCCCc-eeeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEEC
Q psy2979 244 --HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ-WQDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHI 318 (400)
Q Consensus 244 --~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~ 318 (400)
-+++.++.|+. ++ .+..||..+.. +..+..+.........+.. ++.+++.|+. ...+..||.
T Consensus 113 ~sp~~~~l~s~s~---D~----~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~------d~~i~~w~~ 179 (345)
T 3fm0_A 113 WAPSGNLLATCSR---DK----SVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASY------DDTVKLYRE 179 (345)
T ss_dssp ECTTSSEEEEEET---TS----CEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEET------TSCEEEEEE
T ss_pred EeCCCCEEEEEEC---CC----eEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeC------CCcEEEEEe
Confidence 26777888877 54 68888876543 3322222211111122222 5677777776 457888998
Q ss_pred CCCeEEEccCCcCccCcceEEEE--CCEEEEEcCc
Q psy2979 319 AENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGE 351 (400)
Q Consensus 319 ~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~ 351 (400)
.++.|.....+.........+.+ +++.++.|+.
T Consensus 180 ~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~ 214 (345)
T 3fm0_A 180 EEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD 214 (345)
T ss_dssp ETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred cCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC
Confidence 88888755443322222223333 5667777766
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.12 Score=46.56 Aligned_cols=212 Identities=13% Similarity=-0.030 Sum_probs=99.1
Q ss_pred eEEEEEcCCCceEEccCCc---ccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCCc-ceeeeEEEE-C-
Q psy2979 126 SVEGFCVKTKVWKTLSCLP---FAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFD-FDVSGIAML-D- 198 (400)
Q Consensus 126 ~~~~yd~~~~~w~~~~~~~---~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~-r~~~~~~~~-~- 198 (400)
.+.++|..+++-....... ....-.+++.. ++..+........+..+|..+++.... +... ..-.+++.. +
T Consensus 116 ~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~--~~~h~~~v~~v~~s~~~ 193 (357)
T 4g56_B 116 AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKS--YNAHSSEVNCVAACPGK 193 (357)
T ss_dssp CEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTC
T ss_pred EEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEE--EcCCCCCEEEEEEccCC
Confidence 5777887665432211111 11112233333 334133335556788889887653321 1111 111122222 2
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe---CCEEEEEcCccccCCCCcceEEEEeCCCCce
Q psy2979 199 GFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH---EGMLYVTGGAILEDGDGIEQVQRYNPKVNQW 275 (400)
Q Consensus 199 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W 275 (400)
+.+++.||.+ ..+..||..+.+-...............+.. ++.+++.|+. ++ .+..||..+.+-
T Consensus 194 ~~~~~s~~~d-----g~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~---d~----~i~~wd~~~~~~ 261 (357)
T 4g56_B 194 DTIFLSCGED-----GRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE---TG----NVSLVNIKNPDS 261 (357)
T ss_dssp SSCEEEEETT-----SCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES---SS----CEEEEESSCGGG
T ss_pred CceeeeeccC-----CceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec---cc----ceeEEECCCCcE
Confidence 3467777755 3588889887653322222222222222222 4677888876 43 688899876542
Q ss_pred eeccCCCCCceeeeEEEE--CC-eEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE---CCEEEEEc
Q psy2979 276 QDLAPMLIPRSGAAICAL--DS-CIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI---DGKIYVLG 349 (400)
Q Consensus 276 ~~~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~---~~~lyv~G 349 (400)
.. .+.........+.+ ++ .+++.|+. ...+..||..+++....-.. ...-..+.+ ++++++.|
T Consensus 262 ~~--~~~~~~~~v~~l~~sp~~~~~lasgs~------D~~i~iwd~~~~~~~~~~~H---~~~V~~vafsP~d~~~l~s~ 330 (357)
T 4g56_B 262 AQ--TSAVHSQNITGLAYSYHSSPFLASISE------DCTVAVLDADFSEVFRDLSH---RDFVTGVAWSPLDHSKFTTV 330 (357)
T ss_dssp CE--EECCCSSCEEEEEECSSSSCCEEEEET------TSCEEEECTTSCEEEEECCC---SSCEEEEEECSSSTTEEEEE
T ss_pred eE--EEeccceeEEEEEEcCCCCCEEEEEeC------CCEEEEEECCCCcEeEECCC---CCCEEEEEEeCCCCCEEEEE
Confidence 11 11111111122222 34 56666665 35788999988765443211 111122332 57778888
Q ss_pred CccCCCCCCCeEEEEECCC
Q psy2979 350 GEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 350 G~~~~~~~~~~v~~yd~~~ 368 (400)
|. + ..|.+||..+
T Consensus 331 s~-D-----g~v~iW~~~~ 343 (357)
T 4g56_B 331 GW-D-----HKVLHHHLPS 343 (357)
T ss_dssp ET-T-----SCEEEEECC-
T ss_pred cC-C-----CeEEEEECCC
Confidence 87 3 3577888654
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.46 Score=42.09 Aligned_cols=252 Identities=11% Similarity=0.055 Sum_probs=118.8
Q ss_pred EEEEEeccCCCcccceEEEEEcCCCceEEccCCc-ccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCCc
Q psy2979 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLP-FAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFD 188 (400)
Q Consensus 111 ~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~-~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~ 188 (400)
..++.|+.+ ..+..||..+........+. ....-.+++.. ++..++.......+..+|..+++.........
T Consensus 55 ~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~- 128 (368)
T 3mmy_A 55 NFLIAGSWA-----NDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDA- 128 (368)
T ss_dssp EEEEEEETT-----SEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS-
T ss_pred eEEEEECCC-----CcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccC-
Confidence 556666654 46788887763222111111 11111233333 33313333555678889988876554332211
Q ss_pred ceeeeEEE---ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceE
Q psy2979 189 FDVSGIAM---LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQV 265 (400)
Q Consensus 189 r~~~~~~~---~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v 265 (400)
.-.++.. -++.+++.|+.+ ..+..||..+++-... +.......+.....+.+++.++. ..+
T Consensus 129 -~v~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--------~~i 192 (368)
T 3mmy_A 129 -PVKTIHWIKAPNYSCVMTGSWD-----KTLKFWDTRSSNPMMV--LQLPERCYCADVIYPMAVVATAE--------RGL 192 (368)
T ss_dssp -CEEEEEEEECSSCEEEEEEETT-----SEEEEECSSCSSCSEE--EECSSCEEEEEEETTEEEEEEGG--------GCE
T ss_pred -ceEEEEEEeCCCCCEEEEccCC-----CcEEEEECCCCcEEEE--EecCCCceEEEecCCeeEEEeCC--------CcE
Confidence 1122222 256777777765 4588899887642221 11112222333445555444332 367
Q ss_pred EEEeCCCCc--eeeccCCCCCceeeeEEEECC----eEEEEcCcCCCCCCCCeEEEEECCCCeE-----EEccC--Cc--
Q psy2979 266 QRYNPKVNQ--WQDLAPMLIPRSGAAICALDS----CIYVLGGWHASTENTNRVECYHIAENTW-----EYKSP--MK-- 330 (400)
Q Consensus 266 ~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~----~iyv~GG~~~~~~~~~~v~~yd~~~~~W-----~~~~~--~~-- 330 (400)
..||..... +..................+. ..++.|+. ...+..||.....- ..... ..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 266 (368)
T 3mmy_A 193 IVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI------EGRVAIHYINPPNPAKDNFTFKCHRSNGTN 266 (368)
T ss_dssp EEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET------TSEEEEEESSCSCHHHHSEEEECSEEC---
T ss_pred EEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC------CCcEEEEecCCCCccccceeeeeeeccccc
Confidence 788776543 333322211111112222222 23566655 45788888876521 11100 00
Q ss_pred ----CccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCC-CCCceeeEEEccccccccc
Q psy2979 331 ----EKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPS-ARSWLGCVPLQIHKSQFVD 398 (400)
Q Consensus 331 ----~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~r~~~~~~~~~~~~~~~~~ 398 (400)
........+.+ ++++++.|+. + ..|.+||..+.+- +..++. ...-.+++.-.+..++..+
T Consensus 267 ~~~~~~~~~v~~~~~sp~~~~l~s~~~-d-----g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~l~~~ 333 (368)
T 3mmy_A 267 TSAPQDIYAVNGIAFHPVHGTLATVGS-D-----GRFSFWDKDARTK--LKTSEQLDQPISACCFNHNGNIFAYA 333 (368)
T ss_dssp -CCCEEECCEEEEEECTTTCCEEEEET-T-----SCEEEEETTTTEE--EEECCCCSSCEEEEEECTTSSCEEEE
T ss_pred ccccccccceEEEEEecCCCEEEEEcc-C-----CeEEEEECCCCcE--EEEecCCCCCceEEEECCCCCeEEEE
Confidence 00001222333 5667777776 2 4689999887643 333332 2223344444555555544
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=96.40 E-value=0.45 Score=41.74 Aligned_cols=143 Identities=13% Similarity=0.146 Sum_probs=73.5
Q ss_pred EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEE-EeCCEEEEEcCccccCCCCcceEEEEeCCCCceeec
Q psy2979 200 FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVV-AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDL 278 (400)
Q Consensus 200 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~ 278 (400)
.+++.|+.+ ..+..||..+.+....-.-..... .+++ .-++.+++.|+. ++ .+..||..+.+-.
T Consensus 186 ~~~~s~~~d-----~~i~i~d~~~~~~~~~~~~h~~~v-~~~~~s~~~~~l~s~s~---Dg----~i~iwd~~~~~~~-- 250 (340)
T 4aow_A 186 PIIVSCGWD-----KLVKVWNLANCKLKTNHIGHTGYL-NTVTVSPDGSLCASGGK---DG----QAMLWDLNEGKHL-- 250 (340)
T ss_dssp CEEEEEETT-----SCEEEEETTTTEEEEEECCCSSCE-EEEEECTTSSEEEEEET---TC----EEEEEETTTTEEE--
T ss_pred cEEEEEcCC-----CEEEEEECCCCceeeEecCCCCcE-EEEEECCCCCEEEEEeC---CC----eEEEEEeccCcee--
Confidence 455666654 357888988776433211111111 1222 236778888887 54 6888988765432
Q ss_pred cCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEc-cCCc--C---cc-CcceEEEE--CCEEEEEc
Q psy2979 279 APMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYK-SPMK--E---KR-YRPGIAVI--DGKIYVLG 349 (400)
Q Consensus 279 ~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~-~~~~--~---~~-~~~~~~~~--~~~lyv~G 349 (400)
..+........+....+..++.++. ...+..||..+..-... .... . .. .....+.+ +++.++.|
T Consensus 251 ~~~~~~~~v~~~~~~~~~~~~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg 324 (340)
T 4aow_A 251 YTLDGGDIINALCFSPNRYWLCAAT------GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAG 324 (340)
T ss_dssp EEEECSSCEEEEEECSSSSEEEEEE------TTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEE
T ss_pred eeecCCceEEeeecCCCCceeeccC------CCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEE
Confidence 2222222222333334444555554 45788899887754322 1111 0 11 11122233 67777778
Q ss_pred CccCCCCCCCeEEEEECCCC
Q psy2979 350 GEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 350 G~~~~~~~~~~v~~yd~~~~ 369 (400)
+. + ..|.+||.+++
T Consensus 325 s~-D-----g~v~iW~~~tG 338 (340)
T 4aow_A 325 YT-D-----NLVRVWQVTIG 338 (340)
T ss_dssp ET-T-----SCEEEEEEEC-
T ss_pred eC-C-----CEEEEEeCCCc
Confidence 76 3 35888888775
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.53 Score=42.37 Aligned_cols=246 Identities=8% Similarity=-0.114 Sum_probs=119.8
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEE--EECCEEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIA--MLDGFVY 202 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~--~~~~~iy 202 (400)
..++.+|+.+++..++...+..........-++..|+.......++.+|+.+++-..+...+......... .-+++.+
T Consensus 60 ~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l 139 (388)
T 3pe7_A 60 WNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKL 139 (388)
T ss_dssp CEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEE
T ss_pred ceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCee
Confidence 47889999998887776544222211222234542554444467889999888766554444332221111 1233333
Q ss_pred EE----cccC-------------CCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe-CCEEEEEcCccccCCCC-cc
Q psy2979 203 AV----GGWD-------------GSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH-EGMLYVTGGAILEDGDG-IE 263 (400)
Q Consensus 203 v~----GG~~-------------~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~-~~ 263 (400)
+. +... .......++.+|+.+++-..+..-+.. ..+....- +++..++.... .... ..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~-~~~~~~sp~dg~~l~~~~~~--~~~~~~~ 216 (388)
T 3pe7_A 140 VGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQW-LGHPIYRPYDDSTVAFCHEG--PHDLVDA 216 (388)
T ss_dssp EEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSC-EEEEEEETTEEEEEEEEECS--CTTTSSC
T ss_pred ccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCcc-ccccEECCCCCCEEEEEEec--CCCCCcc
Confidence 21 0000 011235788999998876655432211 12222233 44433332221 1111 45
Q ss_pred eEEEEeCCCCceeeccCCCCCc-eeeeEEEECCe-EEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCc------cCc
Q psy2979 264 QVQRYNPKVNQWQDLAPMLIPR-SGAAICALDSC-IYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEK------RYR 335 (400)
Q Consensus 264 ~v~~yd~~~~~W~~~~~~~~~r-~~~~~~~~~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~------~~~ 335 (400)
.++.+|..+.....+....... ..+....-+++ |+..+.. .... ...++.+|+.+++-..+...+.. ...
T Consensus 217 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~-~~~~-~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~ 294 (388)
T 3pe7_A 217 RMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYL-KGSP-DRFIYSADPETLENRQLTSMPACSHLMSNYDG 294 (388)
T ss_dssp SEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEE-TTCC-CEEEEEECTTTCCEEEEEEECCEEEEEECTTS
T ss_pred eEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecC-CCCC-cceEEEEecCCCceEEEEcCCCceeeeecCCC
Confidence 7999998877766665433211 11122222555 5443322 1111 23599999999887666544320 011
Q ss_pred ceEEEECC-EEEEEcCcc--CCCCCCCeEEEEECCCCcEEEecC
Q psy2979 336 PGIAVIDG-KIYVLGGEE--GWDGYHDSIECYDVDNDSWEIMSH 376 (400)
Q Consensus 336 ~~~~~~~~-~lyv~GG~~--~~~~~~~~v~~yd~~~~~W~~~~~ 376 (400)
. ...-+| .|++..... ........|+++|+.+++-+.+..
T Consensus 295 ~-~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~ 337 (388)
T 3pe7_A 295 S-LMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVAR 337 (388)
T ss_dssp S-EEEEEECCC------------CCCCEEEEEETTTTEEEEEEE
T ss_pred C-eEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEecc
Confidence 1 222233 343321000 001224689999999988777654
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.6 Score=42.91 Aligned_cols=224 Identities=14% Similarity=0.144 Sum_probs=119.2
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeecC--EEEEEECCCCCe-EEccCC
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVD--IVYVAASMHKIL-HSLGSL 185 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~--~~~~yd~~~~~w-~~~~~~ 185 (400)
+.+++.... ...+..+|+.+++-..+.... ...+ ++.. ++..+|+..... .++.+++..+.- ..+...
T Consensus 142 g~lyv~d~~-----~~~I~~id~~~g~~~~~~~~~--~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~ 213 (409)
T 3hrp_A 142 NTVLAYQRD-----DPRVRLISVDDNKVTTVHPGF--KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQL 213 (409)
T ss_dssp TEEEEEETT-----TTEEEEEETTTTEEEEEEETC--CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEEC
T ss_pred CCEEEEecC-----CCcEEEEECCCCEEEEeeccC--CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeec
Confidence 456665432 247888999887655443221 1122 3332 333277774322 899999875532 233111
Q ss_pred C--CcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccC---CCCcccc-c-EEEEe--CCEEEEEcCc
Q psy2979 186 K--FDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEP---MKLAVTS-P-AVVAH--EGMLYVTGGA 254 (400)
Q Consensus 186 ~--~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~---l~~~~~~-~-~~~~~--~~~iyv~GG~ 254 (400)
. ....-.+++.. ++.||+... ...+.+||+.++....+.. ....... . .++.. ++.+|+....
T Consensus 214 ~~~~~~~p~~iav~p~~g~lyv~d~------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~ 287 (409)
T 3hrp_A 214 GSTFSGKIGAVALDETEEWLYFVDS------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN 287 (409)
T ss_dssp CTTSCSCCCBCEECTTSSEEEEECT------TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred cchhcCCcEEEEEeCCCCeEEEEEC------CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence 1 11122233333 678999432 2479999999887555421 1111222 1 44444 6899998654
Q ss_pred cccCCCCcceEEEEeCCCCceeeccCCCC----------C--ceeeeEEEE-CCeEEEEcC-cCCCCCCCCeEEEEECCC
Q psy2979 255 ILEDGDGIEQVQRYNPKVNQWQDLAPMLI----------P--RSGAAICAL-DSCIYVLGG-WHASTENTNRVECYHIAE 320 (400)
Q Consensus 255 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~----------~--r~~~~~~~~-~~~iyv~GG-~~~~~~~~~~v~~yd~~~ 320 (400)
...+++||+....-........ . ..-.+++.- ++.||+... . ...+.++|+.+
T Consensus 288 -------~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~------~~~I~~~~~~~ 354 (409)
T 3hrp_A 288 -------LSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK------GYCLRKLDILD 354 (409)
T ss_dssp -------TTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT------TCEEEEEETTT
T ss_pred -------CCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC------CCEEEEEECCC
Confidence 3579999987652222211100 0 011233333 678999875 3 56899999777
Q ss_pred CeEEEccCCc------------CccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEEC
Q psy2979 321 NTWEYKSPMK------------EKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDV 366 (400)
Q Consensus 321 ~~W~~~~~~~------------~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~ 366 (400)
+..+.+...+ .....+..+++ ++.|||.... .+.|.+|++
T Consensus 355 G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~------n~~Ir~i~~ 408 (409)
T 3hrp_A 355 GYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAW------GKAIRKYAV 408 (409)
T ss_dssp TEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEEST------TCEEEEEEE
T ss_pred CEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECC------CCeEEEEEe
Confidence 7766554221 01123334444 4889987643 245666654
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.1 Score=46.98 Aligned_cols=196 Identities=13% Similarity=0.060 Sum_probs=92.9
Q ss_pred eEEEECCeEEEEEeecCEEEEEECCCCCeEEccCCC---CcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCce
Q psy2979 151 GLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLK---FDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEW 226 (400)
Q Consensus 151 ~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~---~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 226 (400)
+++...+..+++......+..+|..+++-....... ....-.+++.. +++.++.|+.++ .+..||..+++-
T Consensus 99 ~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg-----~v~iwd~~~~~~ 173 (357)
T 4g56_B 99 DVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDF-----SVKVWDLSQKAV 173 (357)
T ss_dssp EEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTS-----CEEEEETTTTEE
T ss_pred EEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCC-----eEEEEECCCCcE
Confidence 344444442554455567788887765432211111 11111122222 566777777653 588899888764
Q ss_pred EEccCCCCcccccEEEE-e-CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE---CCeEEEEc
Q psy2979 227 SYIEPMKLAVTSPAVVA-H-EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL---DSCIYVLG 301 (400)
Q Consensus 227 ~~~~~l~~~~~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~---~~~iyv~G 301 (400)
...-....... .+++. . ++.+++.|+. ++ .+..||..+.+-...............+.. ++.+++.|
T Consensus 174 ~~~~~~h~~~v-~~v~~s~~~~~~~~s~~~---dg----~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g 245 (357)
T 4g56_B 174 LKSYNAHSSEV-NCVAACPGKDTIFLSCGE---DG----RILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACG 245 (357)
T ss_dssp EEEECCCSSCE-EEEEECTTCSSCEEEEET---TS----CEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEE
T ss_pred EEEEcCCCCCE-EEEEEccCCCceeeeecc---CC----ceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEe
Confidence 33211111111 12222 2 3357777776 54 688899876653332222222222222332 45777777
Q ss_pred CcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CC-EEEEEcCccCCCCCCCeEEEEECCCCcEEE
Q psy2979 302 GWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DG-KIYVLGGEEGWDGYHDSIECYDVDNDSWEI 373 (400)
Q Consensus 302 G~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~ 373 (400)
+. ...+..||..+.+-.. .+.........+.+ ++ ++.+.|+. + ..|.+||..+++...
T Consensus 246 ~~------d~~i~~wd~~~~~~~~--~~~~~~~~v~~l~~sp~~~~~lasgs~-D-----~~i~iwd~~~~~~~~ 306 (357)
T 4g56_B 246 DE------TGNVSLVNIKNPDSAQ--TSAVHSQNITGLAYSYHSSPFLASISE-D-----CTVAVLDADFSEVFR 306 (357)
T ss_dssp ES------SSCEEEEESSCGGGCE--EECCCSSCEEEEEECSSSSCCEEEEET-T-----SCEEEECTTSCEEEE
T ss_pred ec------ccceeEEECCCCcEeE--EEeccceeEEEEEEcCCCCCEEEEEeC-C-----CEEEEEECCCCcEeE
Confidence 65 4578889987654211 11111111223333 33 56666665 2 358899988875443
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.44 Score=43.31 Aligned_cols=178 Identities=13% Similarity=0.037 Sum_probs=89.5
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEE-----ccCCCCccccc-EEEEe-CC-EEEEEcCccccCCCCcceEEEEe
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSY-----IEPMKLAVTSP-AVVAH-EG-MLYVTGGAILEDGDGIEQVQRYN 269 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-----~~~l~~~~~~~-~~~~~-~~-~iyv~GG~~~~~~~~~~~v~~yd 269 (400)
++.+++.|+.+ ..+..||..++.... +..+....... +++.. ++ .+++.|+. ++ .+..||
T Consensus 93 ~~~~l~s~s~d-----g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~---dg----~i~iwd 160 (402)
T 2aq5_A 93 NDNVIASGSED-----CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC---DN----VILVWD 160 (402)
T ss_dssp CTTEEEEEETT-----SEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET---TS----CEEEEE
T ss_pred CCCEEEEEeCC-----CeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC---CC----EEEEEE
Confidence 56677777755 458888988774321 11111111111 12222 33 57777776 44 689999
Q ss_pred CCCCceeeccC-CCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEcc-CCcCccCcceEE-EECCEE
Q psy2979 270 PKVNQWQDLAP-MLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKS-PMKEKRYRPGIA-VIDGKI 345 (400)
Q Consensus 270 ~~~~~W~~~~~-~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~~~~~~~~-~~~~~l 345 (400)
..+.+....-. ......-.+++.. ++..++.|+. ...+..||+.+++-...- ..........++ .-++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (402)
T 2aq5_A 161 VGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR------DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKI 234 (402)
T ss_dssp TTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET------TSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEE
T ss_pred CCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec------CCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcE
Confidence 88776443211 1111111222222 6677777765 568999999887644322 111111111222 227887
Q ss_pred EEEcCccCCCCCCCeEEEEECCCCcE-EEecCCCCCCCceeeEEEccccccc
Q psy2979 346 YVLGGEEGWDGYHDSIECYDVDNDSW-EIMSHLPSARSWLGCVPLQIHKSQF 396 (400)
Q Consensus 346 yv~GG~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~r~~~~~~~~~~~~~~~ 396 (400)
++.|.. . .....|.+||..+..- .....+.....-..++.-.+..+++
T Consensus 235 l~~g~~-~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 283 (402)
T 2aq5_A 235 LTTGFS-R--MSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVY 283 (402)
T ss_dssp EEEEEC-T--TCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEE
T ss_pred EEEecc-C--CCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEE
Confidence 777721 0 1135789999877532 1111222333334444455555554
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.11 Score=51.47 Aligned_cols=211 Identities=12% Similarity=0.094 Sum_probs=115.1
Q ss_pred eEEEEEcCCCceEEccCCcccceeeeEEEE--CCeEEEEE-eecCEEEEEECCC----CCeEEcc--CCCCcceeeeEEE
Q psy2979 126 SVEGFCVKTKVWKTLSCLPFAISKHGLVVS--GRNTIYCL-DIVDIVYVAASMH----KILHSLG--SLKFDFDVSGIAM 196 (400)
Q Consensus 126 ~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~--~~~~iyv~-~~~~~~~~yd~~~----~~w~~~~--~~~~~r~~~~~~~ 196 (400)
.+..+++...+...+. +.....+++++. ++. ||+. .....++.+++.. ..-..+- .+..| .++++
T Consensus 387 ~I~~id~~~~~~~~~~--~~~~~p~gla~d~~~~~-Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P---~glav 460 (699)
T 1n7d_A 387 EVRKMTLDRSEYTSLI--PNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP---DGLAV 460 (699)
T ss_dssp C-CEECTTSCCEECCS--CCCTTCCCCEEETTTTE-EEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--C---CCEEC
T ss_pred ceEEEeCCCCcceeee--ccCcceEEEccccccCe-EEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCc---ceEEE
Confidence 4556666665555432 222233455554 456 8887 3446788888865 1111111 11111 22332
Q ss_pred --ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccC--CCCcccccEEEE--eCCEEEEEcCccccCCCCcceEEEEeC
Q psy2979 197 --LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEP--MKLAVTSPAVVA--HEGMLYVTGGAILEDGDGIEQVQRYNP 270 (400)
Q Consensus 197 --~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~--l~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~ 270 (400)
.++.||+.-. ....+.++++....-..+.. +..+ .++++ .++.||+..-. . ...|+++++
T Consensus 461 D~~~g~LY~tD~-----~~~~I~v~d~dg~~~~~l~~~~~~~P---~giavDp~~g~ly~td~~---~---~~~I~~~~~ 526 (699)
T 1n7d_A 461 DWIHSNIYWTDS-----VLGTVSVADTKGVKRKTLFREQGSKP---RAIVVDPVHGFMYWTDWG---T---PAKIKKGGL 526 (699)
T ss_dssp CCSSSBCEECCT-----TTSCEEEEBSSSCCEEEECCCSSCCC---CCEECCSSSSCCEECCCS---S---SCCEEBCCS
T ss_pred EeeCCcEEEEec-----cCCeEEEEecCCCceEEEEeCCCCCc---ceEEEccCCCcEEEcccC---C---CCeEEEEeC
Confidence 3678888632 23568899988765444422 2222 23333 36788887422 1 246888887
Q ss_pred CCCceeecc--CCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCc-CccCcceEEEECCEE
Q psy2979 271 KVNQWQDLA--PMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMK-EKRYRPGIAVIDGKI 345 (400)
Q Consensus 271 ~~~~W~~~~--~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~~~~~~~~~~~~~l 345 (400)
....-+.+. .+..| .+++.- ++.||+.... ...|+++|+....-..+...+ ......++++.++.|
T Consensus 527 dG~~~~~l~~~~l~~P---nGlavd~~~~~LY~aD~~------~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~l 597 (699)
T 1n7d_A 527 NGVDIYSLVTENIQWP---NGITLDLLSGRLYWVDSK------LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKV 597 (699)
T ss_dssp SSCCCCEESCSSCSSC---CCEEECTTTCCEEEEETT------TTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEE
T ss_pred CCCCeeEEEeCCCCCc---cEEEEeccCCEEEEEecC------CCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEE
Confidence 654433332 22222 233332 6799998754 578999998754434443222 222345667778999
Q ss_pred EEEcCccCCCCCCCeEEEEECCCCcE
Q psy2979 346 YVLGGEEGWDGYHDSIECYDVDNDSW 371 (400)
Q Consensus 346 yv~GG~~~~~~~~~~v~~yd~~~~~W 371 (400)
|+.-.. ...|.++|+.+++-
T Consensus 598 ywtd~~------~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 598 FWTDII------NEAIFSANRLTGSD 617 (699)
T ss_dssp EEECST------TTCEEEEETTTEEE
T ss_pred EEEeCC------CCeEEEEEccCCCc
Confidence 998643 35789999876643
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.37 Score=43.07 Aligned_cols=214 Identities=10% Similarity=-0.030 Sum_probs=102.4
Q ss_pred ceEEEEEcCCCceEEccC--C-cccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCCc-ceeeeEEEE--
Q psy2979 125 RSVEGFCVKTKVWKTLSC--L-PFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFD-FDVSGIAML-- 197 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~--~-~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~-r~~~~~~~~-- 197 (400)
..+.++|..+++-..... + .....-.+++.. ++..|........+..+|..+++-. ..+... ..-.+++..
T Consensus 103 g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~--~~~~~h~~~V~~~~~~~~ 180 (344)
T 4gqb_B 103 GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVL--SSYRAHAAQVTCVAASPH 180 (344)
T ss_dssp SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE--EEECCCSSCEEEEEECSS
T ss_pred CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEE--EEEcCcCCceEEEEecCC
Confidence 467888887765221110 0 011111233333 3341332255567888898876532 222111 111122221
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCccccc-EEEE--eCCEEEEEcCccccCCCCcceEEEEeCCCCc
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSP-AVVA--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ 274 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~-~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 274 (400)
+..+++.|+.+ ..+..||..+.+-...-......... +++. .++++++.|+. ++ .+..||..+.+
T Consensus 181 ~~~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~---dg----~v~~wd~~~~~ 248 (344)
T 4gqb_B 181 KDSVFLSCSED-----NRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE---NG----TVSLVDTKSTS 248 (344)
T ss_dssp CTTEEEEEETT-----SCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET---TS----EEEEEESCC--
T ss_pred CCCceeeeccc-----cccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc---CC----cEEEEECCCCc
Confidence 33577777765 35888999877643321111111111 2222 25678888877 44 78899987653
Q ss_pred eeeccCCCCCceeeeEEEE--CC-eEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE---CCEEEEE
Q psy2979 275 WQDLAPMLIPRSGAAICAL--DS-CIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI---DGKIYVL 348 (400)
Q Consensus 275 W~~~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~---~~~lyv~ 348 (400)
- +..+.........+.+ ++ .+++.|+. ...+..||..+++-..+.... ..-..+.+ +..+++.
T Consensus 249 ~--~~~~~~h~~~v~~v~fsp~g~~~lasgs~------D~~i~vwd~~~~~~~~~~~H~---~~V~~v~~sp~~~~llas 317 (344)
T 4gqb_B 249 C--VLSSAVHSQCVTGLVFSPHSVPFLASLSE------DCSLAVLDSSLSELFRSQAHR---DFVRDATWSPLNHSLLTT 317 (344)
T ss_dssp C--CEEEECCSSCEEEEEECSSSSCCEEEEET------TSCEEEECTTCCEEEEECCCS---SCEEEEEECSSSTTEEEE
T ss_pred E--EEEEcCCCCCEEEEEEccCCCeEEEEEeC------CCeEEEEECCCCcEEEEcCCC---CCEEEEEEeCCCCeEEEE
Confidence 1 1111111111122222 34 56666665 457888999887654432211 11122333 3457777
Q ss_pred cCccCCCCCCCeEEEEECCCC
Q psy2979 349 GGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 349 GG~~~~~~~~~~v~~yd~~~~ 369 (400)
||. + ..|..++..++
T Consensus 318 ~s~-D-----~~v~~w~v~~~ 332 (344)
T 4gqb_B 318 VGW-D-----HQVVHHVVPTE 332 (344)
T ss_dssp EET-T-----SCEEEEECCC-
T ss_pred EcC-C-----CeEEEEECCCC
Confidence 776 3 35677776653
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.98 Score=44.75 Aligned_cols=235 Identities=8% Similarity=-0.044 Sum_probs=120.6
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEee----------------cCEEEEEECCCCCeE--EccCC
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDI----------------VDIVYVAASMHKILH--SLGSL 185 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~----------------~~~~~~yd~~~~~w~--~~~~~ 185 (400)
..+.++|..+++..... ++... ..+++.. +++.|+.... ...++.++..++... .+-..
T Consensus 151 ~~i~v~d~~tg~~~~~~-~~~~~-~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~ 228 (710)
T 2xdw_A 151 VTIKFMKVDGAKELPDV-LERVK-FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEF 228 (710)
T ss_dssp EEEEEEETTTTEEEEEE-EEEEC-SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECC
T ss_pred EEEEEEECCCCCCCccc-ccCcc-cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEecc
Confidence 37888898888766532 11111 1234444 4543554411 234888888776532 11111
Q ss_pred C-CcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCC------C--ceEEccCCCCcccccEEEEeCCEEEEEcCcc
Q psy2979 186 K-FDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTK------N--EWSYIEPMKLAVTSPAVVAHEGMLYVTGGAI 255 (400)
Q Consensus 186 ~-~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~------~--~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~ 255 (400)
+ .+....+.... +++..+++...+......++.+|..+ . .+..+..-..... .....-++.||+.+..
T Consensus 229 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~- 306 (710)
T 2xdw_A 229 PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEY-DYVTNEGTVFTFKTNR- 306 (710)
T ss_dssp TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCE-EEEEEETTEEEEEECT-
T ss_pred CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEE-EEEeccCCEEEEEECC-
Confidence 1 12222232222 44433333322222246788899876 4 5777654322221 1233456788888654
Q ss_pred ccCCCCcceEEEEeCCCC---ceeeccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCe-EEEccCCc
Q psy2979 256 LEDGDGIEQVQRYNPKVN---QWQDLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENT-WEYKSPMK 330 (400)
Q Consensus 256 ~~~~~~~~~v~~yd~~~~---~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~-W~~~~~~~ 330 (400)
++. ...++.+|..+. .|+.+.+-........+... ++.+++....++ ...++.+|+.+++ ...+. .+
T Consensus 307 --~~~-~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g----~~~l~~~~~~~g~~~~~l~-~~ 378 (710)
T 2xdw_A 307 --HSP-NYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDV----KNTLQLHDLATGALLKIFP-LE 378 (710)
T ss_dssp --TCT-TCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETT----EEEEEEEETTTCCEEEEEC-CC
T ss_pred --CCC-CCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECC----EEEEEEEECCCCCEEEecC-CC
Confidence 321 357899998765 48877543322223334445 677777765432 4579999986554 44443 22
Q ss_pred CccCcceEEEE--CC-EEEEEcCccCCCCCCCeEEEEECCCCc--EEEecC
Q psy2979 331 EKRYRPGIAVI--DG-KIYVLGGEEGWDGYHDSIECYDVDNDS--WEIMSH 376 (400)
Q Consensus 331 ~~~~~~~~~~~--~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~ 376 (400)
. ........ ++ .+++.... ...-..++.||..+++ ++.+..
T Consensus 379 ~--~~v~~~~~s~d~~~l~~~~ss---~~~P~~i~~~d~~tg~~~~~~l~~ 424 (710)
T 2xdw_A 379 V--GSVVGYSGQKKDTEIFYQFTS---FLSPGIIYHCDLTKEELEPRVFRE 424 (710)
T ss_dssp S--SEEEEEECCTTCSEEEEEEEC---SSCCCEEEEEETTSSSCCCEEEEE
T ss_pred C--ceEEEEecCCCCCEEEEEEeC---CCCCCEEEEEECCCCccceEEeee
Confidence 1 11111222 33 45444221 1234689999998877 665543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.63 Score=46.69 Aligned_cols=187 Identities=11% Similarity=0.003 Sum_probs=91.2
Q ss_pred EEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCC-Ccc
Q psy2979 112 IIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLK-FDF 189 (400)
Q Consensus 112 i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~-~~r 189 (400)
.+++|+.+ ..+.+||..+++....-.. ....-.+++.. ++..+........+..||..++ |.....+. ...
T Consensus 69 ~l~~~~~d-----g~i~vw~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~-~~~~~~~~~~~~ 141 (814)
T 3mkq_A 69 WIIVGSDD-----FRIRVFNYNTGEKVVDFEA-HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN-WALEQTFEGHEH 141 (814)
T ss_dssp EEEEEETT-----SEEEEEETTTCCEEEEEEC-CSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT-SEEEEEEECCSS
T ss_pred EEEEEeCC-----CeEEEEECCCCcEEEEEec-CCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC-ceEEEEEcCCCC
Confidence 34555543 4788899888765432111 11111223333 3331333344567888887765 22222111 111
Q ss_pred eeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe---CCEEEEEcCccccCCCCcce
Q psy2979 190 DVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH---EGMLYVTGGAILEDGDGIEQ 264 (400)
Q Consensus 190 ~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~~~ 264 (400)
.-.+++.. ++..++.|+.+ ..+..||..+.+-...........-..++.. ++..+++|+. ++ .
T Consensus 142 ~v~~~~~~p~~~~~l~~~~~d-----g~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg----~ 209 (814)
T 3mkq_A 142 FVMCVAFNPKDPSTFASGCLD-----RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD---DL----T 209 (814)
T ss_dssp CEEEEEEETTEEEEEEEEETT-----SEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT---TS----E
T ss_pred cEEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC---CC----E
Confidence 12222222 45677777755 3588888866542211111111112222222 6777788877 43 7
Q ss_pred EEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeE
Q psy2979 265 VQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTW 323 (400)
Q Consensus 265 v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 323 (400)
+..||..+.+-...-.............-++.+++.|+. ...+..||+.+.+-
T Consensus 210 i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~v~vwd~~~~~~ 262 (814)
T 3mkq_A 210 IKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE------DGTLKIWNSSTYKV 262 (814)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEET------TSCEEEEETTTCSE
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCcE
Confidence 899998766532211111111111112225667777765 45688888877653
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.97 Score=44.51 Aligned_cols=117 Identities=15% Similarity=0.095 Sum_probs=72.1
Q ss_pred EEEECCeEEEEEeecCEEEEEECCCCC--eEEccCCCCc--------ceeeeEEEECCEEEEEcccCCCCCCCeEEEEeC
Q psy2979 152 LVVSGRNTIYCLDIVDIVYVAASMHKI--LHSLGSLKFD--------FDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDP 221 (400)
Q Consensus 152 ~~~~~~~~iyv~~~~~~~~~yd~~~~~--w~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~ 221 (400)
-++.++. +|+......++.+|..+++ |+.-...+.. ....+.+..+++||+... ...+..+|.
T Consensus 62 P~v~~g~-vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------dg~l~alD~ 134 (668)
T 1kv9_A 62 PLFHDGV-IYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL------DGRLIALDA 134 (668)
T ss_dssp CEEETTE-EEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT------TSEEEEEET
T ss_pred CEEECCE-EEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC------CCEEEEEEC
Confidence 3566888 9998777789999998776 8765433211 012234556889988542 246899999
Q ss_pred CCCc--eEEccCCCC--cccccEEEEeCCEEEEEcCccccCCCC-cceEEEEeCCCCc--eeec
Q psy2979 222 TKNE--WSYIEPMKL--AVTSPAVVAHEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQ--WQDL 278 (400)
Q Consensus 222 ~~~~--W~~~~~l~~--~~~~~~~~~~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~--W~~~ 278 (400)
.+++ |+.-..-+. .....+.++.++.+|+..+. .... ...++.||+.+.+ |+.-
T Consensus 135 ~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~---~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 135 KTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGG---AEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp TTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBC---TTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCC---CCcCCCCEEEEEECCCCcEEEEec
Confidence 8874 876432111 11222335678888875332 1111 3479999998765 8753
|
| >2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0014 Score=51.89 Aligned_cols=43 Identities=23% Similarity=0.407 Sum_probs=22.9
Q ss_pred eEEEE-CCeEEehhhHHHhhcCcccccc-------ceeecCCCCHHHHHHHh
Q psy2979 20 VTLCV-DGSKFPAHRVVLAASSPYFKVL-------ETIRLPQLSPYFLHDCV 63 (400)
Q Consensus 20 v~l~~-~~~~~~~hr~vLaa~s~yf~~m-------~~vrl~~l~~~~l~~~i 63 (400)
|+|.. ||+.|.+||.| |.+|+||+.| ..|.|+.++...|...+
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~~~~~Ipl~~V~~~iL~kVi 56 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVI 56 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC------------CCTTSCHHHHHHHH
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHccCCCCceeCCcCcHHHHHHHH
Confidence 66665 89999999999 8999999998 35889999998655433
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=96.24 E-value=1 Score=45.10 Aligned_cols=182 Identities=10% Similarity=0.149 Sum_probs=100.0
Q ss_pred CCeEEEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEcc----C
Q psy2979 156 GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIE----P 231 (400)
Q Consensus 156 ~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~----~ 231 (400)
++. |++.. ..-+.+||+.+.++...... .+..-.++..-++.||+... ..+.+||+.+++++... .
T Consensus 73 ~g~-lWigT-~~Gl~~yd~~~~~f~~~~~~-~~~~i~~i~~~~g~lWigt~-------~Gl~~~~~~~~~~~~~~~~~~~ 142 (758)
T 3ott_A 73 NTY-LYMGT-DNGILVYNYRADRYEQPETD-FPTDVRTMALQGDTLWLGAL-------NGLYTYQLQSRKLTSFDTRRNG 142 (758)
T ss_dssp TTE-EEEEE-TTEEEEEETTTTEECCCSCC-CCSCEEEEEEETTEEEEEET-------TEEEEEETTTCCEEEECHHHHC
T ss_pred CCc-EEEEe-CCCeEEEeCCCCEEECcccC-CCceEEEEEecCCcEEEEcC-------CcceeEeCCCCeEEEeccCCCC
Confidence 455 77763 46789999999877652111 11111223335788888532 25889999999887662 2
Q ss_pred CCCcccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCC----CceeeeEEEE-C-CeEEEEcCcC
Q psy2979 232 MKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLI----PRSGAAICAL-D-SCIYVLGGWH 304 (400)
Q Consensus 232 l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~----~r~~~~~~~~-~-~~iyv~GG~~ 304 (400)
++.... .+++. -++.|++... ..+.+||+.+.+++....... ...-.++..- + +.|++..
T Consensus 143 l~~~~i-~~i~~d~~g~lWigt~---------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt--- 209 (758)
T 3ott_A 143 LPNNTI-YSIIRTKDNQIYVGTY---------NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGT--- 209 (758)
T ss_dssp CSCSCE-EEEEECTTCCEEEEET---------TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEE---
T ss_pred cCCCeE-EEEEEcCCCCEEEEeC---------CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEE---
Confidence 332211 12222 2678887421 268999999988876532111 1111223333 2 3467632
Q ss_pred CCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE-CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEe
Q psy2979 305 ASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI-DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 305 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 374 (400)
..-+.+||+.++++.....++... ..+++.- +|.|+|.- . ..+.+||+.+++++..
T Consensus 210 -----~~Gl~~~~~~~~~~~~~~~l~~~~-i~~i~~d~~g~lWigT-~-------~Gl~~~~~~~~~~~~~ 266 (758)
T 3ott_A 210 -----EGYLFQYFPSTGQIKQTEAFHNNS-IKSLALDGNGDLLAGT-D-------NGLYVYHNDTTPLQHI 266 (758)
T ss_dssp -----EEEEEEEETTTTEEEEEEEEEEEE-EEEEEECTTCCEEEEE-T-------TEEEEECCTTSCCEEE
T ss_pred -----CCCCeEEcCCCCeEEeccCCCCCe-EEEEEEcCCCCEEEEe-C-------CceeEEecCCCcEEEE
Confidence 235889999999887654332111 1111111 56677643 1 2466777776666544
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.88 Score=43.57 Aligned_cols=227 Identities=9% Similarity=-0.042 Sum_probs=114.2
Q ss_pred ceEEEEEc--CCCceEEccCCcccceeeeEEEE-----CCeEEEEEe-ecCEEEEEECCCCCeEEccCC-----------
Q psy2979 125 RSVEGFCV--KTKVWKTLSCLPFAISKHGLVVS-----GRNTIYCLD-IVDIVYVAASMHKILHSLGSL----------- 185 (400)
Q Consensus 125 ~~~~~yd~--~~~~w~~~~~~~~~~~~~~~~~~-----~~~~iyv~~-~~~~~~~yd~~~~~w~~~~~~----------- 185 (400)
..+..||. .+.+- +..++....-..+++. +++.+|+.. ..+.+..+|..+.+-...-+.
T Consensus 200 ~~V~v~D~~~~t~~~--~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~ 277 (543)
T 1nir_A 200 ARIDMIDLWAKEPTK--VAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH 277 (543)
T ss_dssp SEEEEEETTSSSCEE--EEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEE
T ss_pred CeEEEEECcCCCCcE--EEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccc
Confidence 67888998 55442 2233333333445554 455477774 467888999877654322111
Q ss_pred CCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE-eCCE-EEEEcCccccCCCCc
Q psy2979 186 KFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA-HEGM-LYVTGGAILEDGDGI 262 (400)
Q Consensus 186 ~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~~~~-iyv~GG~~~~~~~~~ 262 (400)
+.+|....+..- ++.+|+.... ...+..+|..+.+-..+..++....-+..+. -+++ +|+.+.. .
T Consensus 278 ~~~~v~~i~~s~~~~~~~vs~~~-----~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~-------~ 345 (543)
T 1nir_A 278 PEPRVAAIIASHEHPEFIVNVKE-----TGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANN-------S 345 (543)
T ss_dssp SCCCEEEEEECSSSSEEEEEETT-----TTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGG-------G
T ss_pred cCCceEEEEECCCCCEEEEEECC-----CCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecC-------C
Confidence 111222222222 3455554332 2568888887653211111222222233332 3444 6665544 3
Q ss_pred ceEEEEeCCCCceeec---cCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCC-----eEEEccCCcCcc
Q psy2979 263 EQVQRYNPKVNQWQDL---APMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAEN-----TWEYKSPMKEKR 333 (400)
Q Consensus 263 ~~v~~yd~~~~~W~~~---~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~-----~W~~~~~~~~~~ 333 (400)
+.+..+|..+.+-... ...|.+..+.....- ++.+|+.+... ..+|..+|..+. .|+.+..++...
T Consensus 346 ~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~-----d~~V~v~d~~~~~~~~~~~~~v~~l~~~g 420 (543)
T 1nir_A 346 NKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLG-----DGSISLIGTDPKNHPQYAWKKVAELQGQG 420 (543)
T ss_dssp TEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSS-----SSEEEEEECCTTTCTTTBTSEEEEEECSC
T ss_pred CeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCC-----CceEEEEEeCCCCCchhcCeEEEEEEcCC
Confidence 5788999988865432 223333222222222 36788876421 357888887662 377666555432
Q ss_pred Cc-ceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 334 YR-PGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 334 ~~-~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
.. ..+... +..||+-.-..........|.+||..+.+
T Consensus 421 ~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 421 GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD 460 (543)
T ss_dssp SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence 22 122222 34566643110100124589999998765
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.48 Score=43.42 Aligned_cols=138 Identities=13% Similarity=0.039 Sum_probs=70.7
Q ss_pred eecCEEEEEECCCCCeEEccCCCCcceeeeEEE-ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEE
Q psy2979 164 DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAM-LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVV 242 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~ 242 (400)
.....+..+|..+++....-.. ....-.+++. -++.+++.||.++ ++..||..+.+- +..+......-..+
T Consensus 127 s~Dg~i~vwd~~~~~~~~~l~~-h~~~V~~v~~~~~~~~l~sgs~D~-----~i~iwd~~~~~~--~~~~~~h~~~V~~v 198 (410)
T 1vyh_C 127 SEDATIKVWDYETGDFERTLKG-HTDSVQDISFDHSGKLLASCSADM-----TIKLWDFQGFEC--IRTMHGHDHNVSSV 198 (410)
T ss_dssp ESSSCEEEEETTTCCCCEEECC-CSSCEEEEEECTTSSEEEEEETTS-----CCCEEETTSSCE--EECCCCCSSCEEEE
T ss_pred eCCCeEEEEECCCCcEEEEEec-cCCcEEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCce--eEEEcCCCCCEEEE
Confidence 4445678888877653221110 1111112222 2566777787663 467788776543 22222111111222
Q ss_pred Ee--CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEEC
Q psy2979 243 AH--EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHI 318 (400)
Q Consensus 243 ~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~ 318 (400)
.+ ++..++.|+. ++ .+..||..+..-... +.........+.. ++.+++.|+. ...+..||.
T Consensus 199 ~~~p~~~~l~s~s~---D~----~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~g~~l~s~s~------D~~v~vwd~ 263 (410)
T 1vyh_C 199 SIMPNGDHIVSASR---DK----TIKMWEVQTGYCVKT--FTGHREWVRMVRPNQDGTLIASCSN------DQTVRVWVV 263 (410)
T ss_dssp EECSSSSEEEEEET---TS----EEEEEETTTCCEEEE--EECCSSCEEEEEECTTSSEEEEEET------TSCEEEEET
T ss_pred EEeCCCCEEEEEeC---CC----eEEEEECCCCcEEEE--EeCCCccEEEEEECCCCCEEEEEcC------CCeEEEEEC
Confidence 22 5667777777 44 789999877653221 1111111112222 6677777776 457888888
Q ss_pred CCCeEE
Q psy2979 319 AENTWE 324 (400)
Q Consensus 319 ~~~~W~ 324 (400)
.+....
T Consensus 264 ~~~~~~ 269 (410)
T 1vyh_C 264 ATKECK 269 (410)
T ss_dssp TTCCEE
T ss_pred CCCcee
Confidence 776543
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.46 Score=41.21 Aligned_cols=151 Identities=17% Similarity=0.191 Sum_probs=73.8
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe--C--CEEEEEcCccccCCCCcceEEEEeCCCCc
Q psy2979 199 GFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH--E--GMLYVTGGAILEDGDGIEQVQRYNPKVNQ 274 (400)
Q Consensus 199 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 274 (400)
+.+++.|+.+ .++..||..+++|..+..+.........+.. + +.+++.|+. ++ .+..||..+..
T Consensus 67 g~~l~s~s~D-----~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~---d~----~v~~wd~~~~~ 134 (297)
T 2pm7_B 67 GTILASCSYD-----GKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS---DG----KVSVVEFKENG 134 (297)
T ss_dssp CSEEEEEETT-----TEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET---TS----EEEEEEBCSSS
T ss_pred CCEEEEEcCC-----CEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEEC---CC----cEEEEEecCCC
Confidence 5667777765 4688899888877544322211111122222 2 567777776 44 68888876542
Q ss_pred -eeeccCCCCCceeeeEEEE--------------CCeEEEEcCcCCCCCCCCeEEEEECCC--CeEEEccCCcCccCcce
Q psy2979 275 -WQDLAPMLIPRSGAAICAL--------------DSCIYVLGGWHASTENTNRVECYHIAE--NTWEYKSPMKEKRYRPG 337 (400)
Q Consensus 275 -W~~~~~~~~~r~~~~~~~~--------------~~~iyv~GG~~~~~~~~~~v~~yd~~~--~~W~~~~~~~~~~~~~~ 337 (400)
+...........-.++... ++++++.|+. ...+..||..+ ..|.....+......-.
T Consensus 135 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~------D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~ 208 (297)
T 2pm7_B 135 TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA------DNLVKIWKYNSDAQTYVLESTLEGHSDWVR 208 (297)
T ss_dssp CBCCEEEECCSSCEEEEEECCCC------------CCEEEEEET------TSCEEEEEEETTTTEEEEEEEECCCSSCEE
T ss_pred ceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcC------CCcEEEEEEcCCCceEEEEEEecCCCCceE
Confidence 2110000000000011111 2457777776 34566666544 34554443332222222
Q ss_pred EEEE--C---CEEEEEcCccCCCCCCCeEEEEECCC--CcEEE
Q psy2979 338 IAVI--D---GKIYVLGGEEGWDGYHDSIECYDVDN--DSWEI 373 (400)
Q Consensus 338 ~~~~--~---~~lyv~GG~~~~~~~~~~v~~yd~~~--~~W~~ 373 (400)
.+.. + +++++.|+. + ..|.+||+.+ ..|..
T Consensus 209 ~v~~sp~~~~~~~las~s~-D-----~~v~iWd~~~~~~~~~~ 245 (297)
T 2pm7_B 209 DVAWSPTVLLRSYMASVSQ-D-----RTCIIWTQDNEQGPWKK 245 (297)
T ss_dssp EEEECCCCSSSEEEEEEET-T-----SCEEEEEESSTTSCCEE
T ss_pred EEEECCCCCCceEEEEEEC-C-----CcEEEEEeCCCCCccce
Confidence 3333 2 367777776 3 3567777665 34543
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.34 Score=44.04 Aligned_cols=224 Identities=8% Similarity=0.006 Sum_probs=107.6
Q ss_pred cceEEEEEcCCCceE-EccCCcccceeeeEEEE-CCeEEEEE-eecCEEEEEECCCC--CeEEccCCCCc-ceeeeEEEE
Q psy2979 124 LRSVEGFCVKTKVWK-TLSCLPFAISKHGLVVS-GRNTIYCL-DIVDIVYVAASMHK--ILHSLGSLKFD-FDVSGIAML 197 (400)
Q Consensus 124 ~~~~~~yd~~~~~w~-~~~~~~~~~~~~~~~~~-~~~~iyv~-~~~~~~~~yd~~~~--~w~~~~~~~~~-r~~~~~~~~ 197 (400)
...+.+||..++.-. .+..+.....-.+++.. ++. +++. .....+..||..+. ....+..+... ..-.+++..
T Consensus 44 d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 122 (416)
T 2pm9_A 44 DSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNK-IIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFN 122 (416)
T ss_dssp CCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSS-CEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEEC
T ss_pred CCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCC-eEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEc
Confidence 346788887765422 12222222222334433 333 3333 44457888887761 11122222111 111122222
Q ss_pred -C-CEEEEEcccCCCCCCCeEEEEeCCCCc------eEE-ccCCC-CcccccEEEEe-C-CEEEEEcCccccCCCCcceE
Q psy2979 198 -D-GFVYAVGGWDGSCRLDSVERYDPTKNE------WSY-IEPMK-LAVTSPAVVAH-E-GMLYVTGGAILEDGDGIEQV 265 (400)
Q Consensus 198 -~-~~iyv~GG~~~~~~~~~v~~yd~~~~~------W~~-~~~l~-~~~~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~v 265 (400)
+ +.+++.|+.+ ..+..||..+.+ -.. +.... ....-.+++.. + +.+++.|+. ++ .+
T Consensus 123 ~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg----~v 190 (416)
T 2pm9_A 123 AKQDNVLASGGNN-----GEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGS---SN----FA 190 (416)
T ss_dssp SSSTTBEEEECSS-----SCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESS---SS----CE
T ss_pred CCCCCEEEEEcCC-----CeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcC---CC----CE
Confidence 2 5677777755 358888888765 111 11111 11111223332 3 578888887 44 68
Q ss_pred EEEeCCCCceeeccCCCC-----CceeeeEEEE-CC-eEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCc-CccCcce
Q psy2979 266 QRYNPKVNQWQDLAPMLI-----PRSGAAICAL-DS-CIYVLGGWHASTENTNRVECYHIAENTWEYKSPMK-EKRYRPG 337 (400)
Q Consensus 266 ~~yd~~~~~W~~~~~~~~-----~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~~~~~~ 337 (400)
..||..+.+-...-.... .....+++.. ++ .+++.|+.++. ...+..||..+..- .+..+. .......
T Consensus 191 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~---~~~i~~~d~~~~~~-~~~~~~~~~~~~v~ 266 (416)
T 2pm9_A 191 SIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN---DPSILIWDLRNANT-PLQTLNQGHQKGIL 266 (416)
T ss_dssp EEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS---SCCCCEEETTSTTS-CSBCCCSCCSSCEE
T ss_pred EEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC---CceEEEEeCCCCCC-CcEEeecCccCcee
Confidence 999998776443322221 1112222222 33 57777765321 12688888876431 111121 1111222
Q ss_pred EEEE---CCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 338 IAVI---DGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 338 ~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
.+.+ ++++++.|+. + ..|.+||..+.+
T Consensus 267 ~~~~s~~~~~~l~s~~~-d-----g~v~~wd~~~~~ 296 (416)
T 2pm9_A 267 SLDWCHQDEHLLLSSGR-D-----NTVLLWNPESAE 296 (416)
T ss_dssp EEEECSSCSSCEEEEES-S-----SEEEEECSSSCC
T ss_pred EEEeCCCCCCeEEEEeC-C-----CCEEEeeCCCCc
Confidence 3333 5677777776 2 468899988764
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0041 Score=56.76 Aligned_cols=182 Identities=9% Similarity=0.050 Sum_probs=76.5
Q ss_pred EECCeEEEEEeecCEEEEEECCCCC--eEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCC--ceEEc
Q psy2979 154 VSGRNTIYCLDIVDIVYVAASMHKI--LHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKN--EWSYI 229 (400)
Q Consensus 154 ~~~~~~iyv~~~~~~~~~yd~~~~~--w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~ 229 (400)
+.++. +|+......++.+|..+++ |+.... . ...+.+..++.+|+.++.+ ..+..+|..++ .|..-
T Consensus 7 v~~~~-v~~gs~dg~v~a~d~~tG~~~W~~~~~--~--~~s~p~~~~g~~~v~~s~d-----g~l~a~d~~tG~~~w~~~ 76 (369)
T 2hz6_A 7 LPETL-LFVSTLDGSLHAVSKRTGSIKWTLKED--P--VLQVPTHVEEPAFLPDPND-----GSLYTLGSKNNEGLTKLP 76 (369)
T ss_dssp -CTTE-EEEEETTSEEEEEETTTCCEEEEEECC--C--SCCCC-----CCEEECTTT-----CCEEEC-----CCSEECS
T ss_pred eeCCE-EEEEcCCCEEEEEECCCCCEEEEecCC--C--ceecceEcCCCEEEEeCCC-----CEEEEEECCCCceeeeee
Confidence 33455 7777666788999988775 765331 1 1112233466788876543 35888998765 46532
Q ss_pred cCCCCcccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCc--eeeccCCCCCceeeeEEEECCeEEEEcCcCCC
Q psy2979 230 EPMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ--WQDLAPMLIPRSGAAICALDSCIYVLGGWHAS 306 (400)
Q Consensus 230 ~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~ 306 (400)
...+... ..+.+. .++.+|+ |+. ...++.+|+.+.+ |+.-.... .+ .+..++.+|+. +.
T Consensus 77 ~~~~~~~-~~sp~~~~~~~v~~-g~~-------dg~v~a~D~~tG~~~w~~~~~~~-~~----~~p~~~~v~~~-~~--- 138 (369)
T 2hz6_A 77 FTIPELV-QASPCRSSDGILYM-GKK-------QDIWYVIDLLTGEKQQTLSSAFA-DS----LSPSTSLLYLG-RT--- 138 (369)
T ss_dssp CCHHHHH-TTCSCC-----CCC-CEE-------EEEEEEECCC---------------------------EEEE-EE---
T ss_pred ccCcccc-ccCceEecCCEEEE-EeC-------CCEEEEEECCCCcEEEEecCCCc-cc----ccccCCEEEEE-ec---
Confidence 2211111 111122 3555554 433 2368899987654 66432211 01 11134555543 32
Q ss_pred CCCCCeEEEEECCCCe--EEEcc-CCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCc--EEEe
Q psy2979 307 TENTNRVECYHIAENT--WEYKS-PMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS--WEIM 374 (400)
Q Consensus 307 ~~~~~~v~~yd~~~~~--W~~~~-~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~ 374 (400)
...+..+|+.+++ |+.-. ....+... .-...++.+|+.... ..++++|+.+++ |+.-
T Consensus 139 ---dg~v~a~d~~tG~~~W~~~~~~~~~~~~~-~~~~~~~~v~~~~~d-------g~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 139 ---EYTITMYDTKTRELRWNATYFDYAASLPE-DDVDYKMSHFVSNGD-------GLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp ---EEEEECCCSSSSSCCCEEEEEEECCBCCC-CCTTCCCCEEEEETS-------CEEEEECTTTCCEEEEEE
T ss_pred ---CCEEEEEECCCCCEEEeEecccccCcccc-CCccccceEEEECCC-------CEEEEEECCCCcEEEEec
Confidence 3578888987664 76421 10000000 000123566664321 368888887764 7653
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.75 Score=41.89 Aligned_cols=229 Identities=13% Similarity=0.129 Sum_probs=124.5
Q ss_pred EEEEEcCC--CceEEccCCcccceeeeEEEE---CCeEEEEEeecC----EEEEEECCCCCeEEccCC---CCc--c---
Q psy2979 127 VEGFCVKT--KVWKTLSCLPFAISKHGLVVS---GRNTIYCLDIVD----IVYVAASMHKILHSLGSL---KFD--F--- 189 (400)
Q Consensus 127 ~~~yd~~~--~~w~~~~~~~~~~~~~~~~~~---~~~~iyv~~~~~----~~~~yd~~~~~w~~~~~~---~~~--r--- 189 (400)
+..++... ..|..+........-++++.- ++. ||+..... .+++.+....+|+.+... +.. +
T Consensus 33 l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~-l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~ 111 (394)
T 3b7f_A 33 AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPER-MLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETG 111 (394)
T ss_dssp EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTC-EEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----C
T ss_pred eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCe-EEEEecCCCCCccEEEeCCCCCCceECCccccCCCccccccc
Confidence 55666544 589876421222233445544 355 88874433 688887778899987642 111 1
Q ss_pred ----eeeeEEEE----CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCC---CC--------------cccccEEEEe
Q psy2979 190 ----DVSGIAML----DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPM---KL--------------AVTSPAVVAH 244 (400)
Q Consensus 190 ----~~~~~~~~----~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l---~~--------------~~~~~~~~~~ 244 (400)
.-.+++.. .+.||+.+. ...+++.+....+|+.+..+ |. ....++++..
T Consensus 112 ~~~~~i~~l~~~~~~~~~~l~~g~~------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d 185 (394)
T 3b7f_A 112 RVVDHVFWLTPGHASEPGTWYAGTS------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVD 185 (394)
T ss_dssp CCCCEEEEEEECCTTSTTCEEEEEE------TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEEC
T ss_pred ccccceeEEEeCCCCCCCEEEEEec------CCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEEC
Confidence 11223332 467777542 13488888888899987532 21 1111233332
Q ss_pred ---CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccC-C-----CC-----CceeeeEEEEC---CeEEEEcCcCCCC
Q psy2979 245 ---EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAP-M-----LI-----PRSGAAICALD---SCIYVLGGWHAST 307 (400)
Q Consensus 245 ---~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~-~-----~~-----~r~~~~~~~~~---~~iyv~GG~~~~~ 307 (400)
.+.||+.... ..+++.+....+|+.+.. + |. ....+.++... +.||+..
T Consensus 186 ~~~~~~l~vg~~~--------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~------ 251 (394)
T 3b7f_A 186 PRDPKHLYIGMSS--------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN------ 251 (394)
T ss_dssp TTCTTCEEEEEET--------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE------
T ss_pred CCCCCEEEEEECC--------CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc------
Confidence 3568876433 258888888899998853 1 21 12234444432 5677743
Q ss_pred CCCCeEEEEECCCCeEEEccC-CcCc--cCcceEEEE---CCEEEEEcCccCCC-------CCCCeEEEEECCCCcEEEe
Q psy2979 308 ENTNRVECYHIAENTWEYKSP-MKEK--RYRPGIAVI---DGKIYVLGGEEGWD-------GYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 308 ~~~~~v~~yd~~~~~W~~~~~-~~~~--~~~~~~~~~---~~~lyv~GG~~~~~-------~~~~~v~~yd~~~~~W~~~ 374 (400)
...+++.+-...+|+.+.. +|.. .....++.. .+.||+.... ... .....+++-.-...+|+.+
T Consensus 252 --~~gl~~s~D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~-~~~~w~~~~~~~~~~~~~S~DgG~tW~~~ 328 (394)
T 3b7f_A 252 --HCGIYRMDRREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMD-GSDVWPRVSPGGKPAVYVTRDAGESWQRQ 328 (394)
T ss_dssp --TTEEEEEETTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECB-CCSSTTCCBCCSSCCEEEESSTTSCCEEE
T ss_pred --CCeEEEeCCCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEecc-CCccceeecCCCceeEEEECCCCCCceEC
Confidence 3468889888999999864 4432 222222221 3678886421 100 1112344433334689988
Q ss_pred c-CCCC
Q psy2979 375 S-HLPS 379 (400)
Q Consensus 375 ~-~~~~ 379 (400)
. .+|.
T Consensus 329 ~~glp~ 334 (394)
T 3b7f_A 329 DRGLPT 334 (394)
T ss_dssp CBTSCC
T ss_pred CCCCCC
Confidence 5 3554
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.38 Score=43.31 Aligned_cols=177 Identities=8% Similarity=-0.069 Sum_probs=93.5
Q ss_pred eecCEEEEEECCCCCeEEccCC-CCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccc-c
Q psy2979 164 DIVDIVYVAASMHKILHSLGSL-KFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTS-P 239 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~-~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~-~ 239 (400)
.....+..||..+.+....-.. .....-.+++.. ++.+++.|+.+ ..+..||..++....+......... .
T Consensus 93 ~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~v~ 167 (383)
T 3ei3_B 93 SKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR-----GATTLRDFSGSVIQVFAKTDSWDYWYC 167 (383)
T ss_dssp EBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT-----TEEEEEETTSCEEEEEECCCCSSCCEE
T ss_pred cCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC-----CEEEEEECCCCceEEEeccCCCCCCeE
Confidence 3345677788887766544332 122222233333 34666767654 4688899988766655433211111 1
Q ss_pred EEE-EeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCe-EEEEcCcCCCCCCCCeEEEE
Q psy2979 240 AVV-AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSC-IYVLGGWHASTENTNRVECY 316 (400)
Q Consensus 240 ~~~-~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~v~~y 316 (400)
+++ .-++..++.|+. + ..+..||.....-..+..-.. .-.+++.. ++. +++.|+. ...+..|
T Consensus 168 ~~~~~~~~~~l~~~~~---d----~~i~i~d~~~~~~~~~~~h~~--~v~~~~~~~~~~~~l~s~~~------d~~i~iw 232 (383)
T 3ei3_B 168 CVDVSVSRQMLATGDS---T----GRLLLLGLDGHEIFKEKLHKA--KVTHAEFNPRCDWLMATSSV------DATVKLW 232 (383)
T ss_dssp EEEEETTTTEEEEEET---T----SEEEEEETTSCEEEEEECSSS--CEEEEEECSSCTTEEEEEET------TSEEEEE
T ss_pred EEEECCCCCEEEEECC---C----CCEEEEECCCCEEEEeccCCC--cEEEEEECCCCCCEEEEEeC------CCEEEEE
Confidence 222 235677777776 4 378999985444333322111 11122222 444 7777766 4578999
Q ss_pred ECCC----CeEEEccCCcCccCcceEEEE---CCEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 317 HIAE----NTWEYKSPMKEKRYRPGIAVI---DGKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 317 d~~~----~~W~~~~~~~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
|..+ ......... ......+.+ +++.++.|+. + ..|.+||..+.
T Consensus 233 d~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~~l~~~~~-d-----~~i~iwd~~~~ 283 (383)
T 3ei3_B 233 DLRNIKDKNSYIAEMPH---EKPVNAAYFNPTDSTKLLTTDQ-R-----NEIRVYSSYDW 283 (383)
T ss_dssp EGGGCCSTTCEEEEEEC---SSCEEEEEECTTTSCEEEEEES-S-----SEEEEEETTBT
T ss_pred eCCCCCcccceEEEecC---CCceEEEEEcCCCCCEEEEEcC-C-----CcEEEEECCCC
Confidence 9876 333222111 111122233 5566777765 2 46888887654
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.65 Score=40.51 Aligned_cols=186 Identities=13% Similarity=0.105 Sum_probs=85.4
Q ss_pred EEEEEeccCCCcccceEEEEEcCCC--ceEEccCCcccc-eeeeEEEEC---CeEEEEE-eecCEEEEEECCCC------
Q psy2979 111 VIIAVGGEDDKVVLRSVEGFCVKTK--VWKTLSCLPFAI-SKHGLVVSG---RNTIYCL-DIVDIVYVAASMHK------ 177 (400)
Q Consensus 111 ~i~~~gg~~~~~~~~~~~~yd~~~~--~w~~~~~~~~~~-~~~~~~~~~---~~~iyv~-~~~~~~~~yd~~~~------ 177 (400)
..++.|+.+ ..+.+||..++ .+..+..+.... .-.+++... +. +++. .....+..+|..++
T Consensus 24 ~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~-~l~s~~~dg~v~vwd~~~~~~~~~~ 97 (351)
T 3f3f_A 24 RHVATCSSD-----QHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR-IIASASYDKTVKLWEEDPDQEECSG 97 (351)
T ss_dssp SEEEEEETT-----SEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS-EEEEEETTSCEEEEEECTTSCTTSS
T ss_pred CEEEEeeCC-----CeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC-EEEEEcCCCeEEEEecCCCcccccc
Confidence 345566544 46777877643 333322222111 122333332 44 3333 44556777887654
Q ss_pred -CeEEccCCCCcce-eeeEEEE-C--CEEEEEcccCCCCCCCeEEEEeCCCCc----eEEc---cCC---CCcc-cccEE
Q psy2979 178 -ILHSLGSLKFDFD-VSGIAML-D--GFVYAVGGWDGSCRLDSVERYDPTKNE----WSYI---EPM---KLAV-TSPAV 241 (400)
Q Consensus 178 -~w~~~~~~~~~r~-~~~~~~~-~--~~iyv~GG~~~~~~~~~v~~yd~~~~~----W~~~---~~l---~~~~-~~~~~ 241 (400)
.|..+..+..... -.+++.. + +..++.|+.+ ..+..||..+.+ |... ..+ +... .....
T Consensus 98 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (351)
T 3f3f_A 98 RRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGND-----GILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFC 172 (351)
T ss_dssp CSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-----CEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEE
T ss_pred cCcceeeeecccCCceeEEEEcCCCCCcEEEEecCC-----CcEEEecCCChHHhccccccccccccccccCCcccceeE
Confidence 2333333222111 1122222 3 5666667654 358888877653 2211 111 1111 11111
Q ss_pred EEe-----CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCcee-eeEEEE-CC----eEEEEcCcCCCCCCC
Q psy2979 242 VAH-----EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSG-AAICAL-DS----CIYVLGGWHASTENT 310 (400)
Q Consensus 242 ~~~-----~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~-~~~~~~-~~----~iyv~GG~~~~~~~~ 310 (400)
... ++..+++|+. + ..+..++........+..+...... .+++.. ++ .+++.|+. .
T Consensus 173 ~~~~p~~~~~~~l~~~~~---~----~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~------d 239 (351)
T 3f3f_A 173 LSWCPSRFSPEKLAVSAL---E----QAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCK------D 239 (351)
T ss_dssp EEECCCSSSCCEEEEEET---T----EEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEET------T
T ss_pred EEeccCCCCCcEEEEecC---C----CcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcC------C
Confidence 111 3667777766 3 2455556666665444444322222 222222 33 67777775 3
Q ss_pred CeEEEEECCC
Q psy2979 311 NRVECYHIAE 320 (400)
Q Consensus 311 ~~v~~yd~~~ 320 (400)
..+..||..+
T Consensus 240 g~i~iwd~~~ 249 (351)
T 3f3f_A 240 GRIRIFKITE 249 (351)
T ss_dssp SCEEEEEEEE
T ss_pred CeEEEEeCCC
Confidence 4566776654
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.73 Score=40.84 Aligned_cols=235 Identities=10% Similarity=-0.008 Sum_probs=113.3
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEE-c--cCCcccce--eeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccC
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKT-L--SCLPFAIS--KHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGS 184 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~-~--~~~~~~~~--~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~ 184 (400)
+.+++.|+.+ ..+..+|..+++-.. + ........ ....+..++. +.+......+..||..+.+-...-.
T Consensus 48 ~~~l~sg~~D-----g~v~iwd~~~~~~~~~~~~~~v~~~~~~~~~~s~s~D~~-i~~w~~~~~~~~~~~~~~~~~~~~~ 121 (343)
T 3lrv_A 48 KWVCMCRCED-----GALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNR-LLLLYPGNQITILDSKTNKVLREIE 121 (343)
T ss_dssp EEEEEEEEET-----TEEEEEEESSSSCEEEEEEECCCTTCCCCSEEEECSTTE-EEEEETTTEEEEEETTTCCEEEEEE
T ss_pred CCEEEEECCC-----CcEEEEECCCCcEEEEEecCCceeeeeCCceEEecCCCe-EEEEEccCceEEeecCCcceeEEee
Confidence 5667777766 467788877665321 1 11110000 0122222444 6666666677778877765222111
Q ss_pred CCCcceeeeEEE-E--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE-eCCEEEEEcCccccCCC
Q psy2979 185 LKFDFDVSGIAM-L--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA-HEGMLYVTGGAILEDGD 260 (400)
Q Consensus 185 ~~~~r~~~~~~~-~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~ 260 (400)
......-.+++. - ++..++.|+.+ ..+..||..+++-...........-.+++. -++.+++.|+. ++
T Consensus 122 ~~~~~~v~~~~~~~~~~~~~l~s~s~d-----g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~---dg- 192 (343)
T 3lrv_A 122 VDSANEIIYMYGHNEVNTEYFIWADNR-----GTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSP---DG- 192 (343)
T ss_dssp CCCSSCEEEEECCC---CCEEEEEETT-----CCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECT---TS-
T ss_pred cCCCCCEEEEEcCCCCCCCEEEEEeCC-----CcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcC---CC-
Confidence 111111111111 1 45667777765 358889998887644332222212223332 36788888887 54
Q ss_pred CcceEEEEeCCCCcee--eccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEE-EccCCcCccCcc
Q psy2979 261 GIEQVQRYNPKVNQWQ--DLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWE-YKSPMKEKRYRP 336 (400)
Q Consensus 261 ~~~~v~~yd~~~~~W~--~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~~~~~ 336 (400)
.+..||..+.+-. .+.. .....-.++... ++..++.|+. ..+..||..+.+-. .+..+.......
T Consensus 193 ---~i~iwd~~~~~~~~~~~~~-~h~~~v~~l~fs~~g~~l~s~~~-------~~v~iwd~~~~~~~~~~~~~~~~~~~~ 261 (343)
T 3lrv_A 193 ---ILDVYNLSSPDQASSRFPV-DEEAKIKEVKFADNGYWMVVECD-------QTVVCFDLRKDVGTLAYPTYTIPEFKT 261 (343)
T ss_dssp ---CEEEEESSCTTSCCEECCC-CTTSCEEEEEECTTSSEEEEEES-------SBEEEEETTSSTTCBSSCCCBC-----
T ss_pred ---EEEEEECCCCCCCccEEec-cCCCCEEEEEEeCCCCEEEEEeC-------CeEEEEEcCCCCcceeecccccccccc
Confidence 6899998876532 2211 011111122222 5666666652 37889998775421 111111010111
Q ss_pred --eEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEE
Q psy2979 337 --GIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEI 373 (400)
Q Consensus 337 --~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~ 373 (400)
.++.+ +++.++.|+. +.. .-.+|.|+.....|..
T Consensus 262 ~~~~~~~~~~g~~l~~~s~-~d~--~i~v~~~~~~~~~~~~ 299 (343)
T 3lrv_A 262 GTVTYDIDDSGKNMIAYSN-ESN--SLTIYKFDKKTKNWTK 299 (343)
T ss_dssp CCEEEEECTTSSEEEEEET-TTT--EEEEEEECTTTCSEEE
T ss_pred cceEEEECCCCCEEEEecC-CCC--cEEEEEEcccccceEe
Confidence 12334 4665555332 111 1344445556678997
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.79 Score=41.05 Aligned_cols=197 Identities=13% Similarity=0.070 Sum_probs=110.9
Q ss_pred ecCEEEEEECCCCCeEEccCCCCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccC--CCCcccccE
Q psy2979 165 IVDIVYVAASMHKILHSLGSLKFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEP--MKLAVTSPA 240 (400)
Q Consensus 165 ~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~--l~~~~~~~~ 240 (400)
..+.+..+++.......+.+- ...-.+++.- ++.||+.-- ....+.++++.....+.+.. +..+ .+
T Consensus 51 ~~~~I~~i~~~g~~~~~~~~~--~~~~~~l~~d~~~~~ly~~D~-----~~~~I~r~~~~g~~~~~~~~~~~~~p---~g 120 (349)
T 3v64_C 51 NRIDIRQVLPHRSEYTLLLNN--LENAIALDFHHRRELVFWSDV-----TLDRILRANLNGSNVEEVVSTGLESP---GG 120 (349)
T ss_dssp CBSCEEEECTTSCCEEEEECS--CSCEEEEEEETTTTEEEEEET-----TTTEEEEEETTSCSCEEEECSSCSCC---CE
T ss_pred cccceEEEeCCCCeeEEeecC--CCceEEEEEeccccEEEEEec-----cCCceEEEecCCCCceEEEeCCCCCc---cE
Confidence 345677788877666554321 1122333332 678998742 23578999998776555422 2222 23
Q ss_pred EEE--eCCEEEEEcCccccCCCCcceEEEEeCCCCceeecc--CCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEE
Q psy2979 241 VVA--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLA--PMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVE 314 (400)
Q Consensus 241 ~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~ 314 (400)
+++ .++.||+.... .+.++++++....-+.+. .+..| .++++- ++.||+..-.. ...++
T Consensus 121 lavd~~~g~ly~~d~~-------~~~I~~~~~dG~~~~~l~~~~l~~P---~~iavdp~~g~ly~td~~~-----~~~I~ 185 (349)
T 3v64_C 121 LAVDWVHDKLYWTDSG-------TSRIEVANLDGAHRKVLLWQSLEKP---RAIALHPMEGTIYWTDWGN-----TPRIE 185 (349)
T ss_dssp EEEETTTTEEEEEETT-------TTEEEEEETTSCSCEEEECTTCSCE---EEEEEETTTTEEEEEECSS-----SCEEE
T ss_pred EEEecCCCeEEEEcCC-------CCeEEEEcCCCCceEEEEeCCCCCc---ceEEEecCcCeEEEeccCC-----CCEEE
Confidence 444 47899998655 357999998765533332 23333 233343 68899886431 26899
Q ss_pred EEECCCCeEEEccCCcCccCcceEEEE---CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEcc
Q psy2979 315 CYHIAENTWEYKSPMKEKRYRPGIAVI---DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQI 391 (400)
Q Consensus 315 ~yd~~~~~W~~~~~~~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 391 (400)
++++....-+.+.. .....+...++ +++||+.-.. ...|+++|+....-+.+.... ...-.++++.++
T Consensus 186 r~~~dG~~~~~~~~--~~~~~PnGla~d~~~~~lY~aD~~------~~~I~~~~~dG~~~~~~~~~~-~~~P~giav~~~ 256 (349)
T 3v64_C 186 ASSMDGSGRRIIAD--THLFWPNGLTIDYAGRRMYWVDAK------HHVIERANLDGSHRKAVISQG-LPHPFAITVFED 256 (349)
T ss_dssp EEETTSCSCEESCC--SSCSCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEECSS-CSSEEEEEEETT
T ss_pred EEeCCCCCcEEEEE--CCCCCcceEEEeCCCCEEEEEECC------CCEEEEEeCCCCceEEEEeCC-CCCceEEEEECC
Confidence 99987654444322 11222333333 6899998543 358999998765433332211 112256666554
Q ss_pred cccc
Q psy2979 392 HKSQ 395 (400)
Q Consensus 392 ~~~~ 395 (400)
..|+
T Consensus 257 ~ly~ 260 (349)
T 3v64_C 257 SLYW 260 (349)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=1.2 Score=43.16 Aligned_cols=119 Identities=13% Similarity=0.116 Sum_probs=69.9
Q ss_pred eEEEECCeEEEEEee-cCEEEEEEC-CCCC--eEEccCCCCc-----c---eeeeEEE--ECCE----EEEEcccCCCCC
Q psy2979 151 GLVVSGRNTIYCLDI-VDIVYVAAS-MHKI--LHSLGSLKFD-----F---DVSGIAM--LDGF----VYAVGGWDGSCR 212 (400)
Q Consensus 151 ~~~~~~~~~iyv~~~-~~~~~~yd~-~~~~--w~~~~~~~~~-----r---~~~~~~~--~~~~----iyv~GG~~~~~~ 212 (400)
+-++.++. ||+... ...++.+|. .+++ |+.-...... . ...+.+. .+++ ||+...
T Consensus 57 tP~v~~g~-vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~------ 129 (599)
T 1w6s_A 57 APLVVDGK-MYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL------ 129 (599)
T ss_dssp CCEEETTE-EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT------
T ss_pred ccEEECCE-EEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC------
Confidence 34556888 999866 678999999 7765 8875443211 1 1123444 4666 887532
Q ss_pred CCeEEEEeCCCCc--eEEccCCCCc--ccccEEEEeCCEEEEEcCccccCCCC-cceEEEEeCCCCc--eeecc
Q psy2979 213 LDSVERYDPTKNE--WSYIEPMKLA--VTSPAVVAHEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQ--WQDLA 279 (400)
Q Consensus 213 ~~~v~~yd~~~~~--W~~~~~l~~~--~~~~~~~~~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~--W~~~~ 279 (400)
...+..+|..+++ |+.-..-+.. ....+-++.++.||+-.+. .... ...+..||..+.+ |+.-.
T Consensus 130 dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g---~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 130 DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSG---AELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBC---GGGTCCCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecc---cccCCCCeEEEEECCCCcEEEEEcC
Confidence 2468899998874 8753221111 1122334578888875431 1000 3478999998765 87543
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=95.99 E-value=1.1 Score=42.98 Aligned_cols=143 Identities=15% Similarity=0.141 Sum_probs=76.2
Q ss_pred EEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCccc---cc-EEEE-eC-CEEEEEcCccccCCCCcceEEEEeCCCCc
Q psy2979 201 VYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVT---SP-AVVA-HE-GMLYVTGGAILEDGDGIEQVQRYNPKVNQ 274 (400)
Q Consensus 201 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~---~~-~~~~-~~-~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 274 (400)
+++.|+.+ ..+..||..+.+-... +..... .. +++. -+ +..++.|+. ++ .+..||..+.+
T Consensus 175 ~l~~~~~d-----~~v~vwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg----~i~vwd~~~~~ 240 (615)
T 1pgu_A 175 RSMTVGDD-----GSVVFYQGPPFKFSAS--DRTHHKQGSFVRDVEFSPDSGEFVITVGS---DR----KISCFDGKSGE 240 (615)
T ss_dssp EEEEEETT-----TEEEEEETTTBEEEEE--ECSSSCTTCCEEEEEECSTTCCEEEEEET---TC----CEEEEETTTCC
T ss_pred EEEEEeCC-----CcEEEEeCCCcceeee--ecccCCCCceEEEEEECCCCCCEEEEEeC---CC----eEEEEECCCCC
Confidence 66666654 4688889776543322 221111 12 2222 24 677777776 44 68999987765
Q ss_pred eeecc-CC--CCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCc---CccCcceEEEECCEEEEE
Q psy2979 275 WQDLA-PM--LIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMK---EKRYRPGIAVIDGKIYVL 348 (400)
Q Consensus 275 W~~~~-~~--~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~---~~~~~~~~~~~~~~lyv~ 348 (400)
....- .. .....-.++...++..++.|+. ...+..||..+.+....-..+ .......+...++..++.
T Consensus 241 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 314 (615)
T 1pgu_A 241 FLKYIEDDQEPVQGGIFALSWLDSQKFATVGA------DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIIS 314 (615)
T ss_dssp EEEECCBTTBCCCSCEEEEEESSSSEEEEEET------TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEE
T ss_pred EeEEecccccccCCceEEEEEcCCCEEEEEcC------CCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEE
Confidence 43322 10 1111111222227777777775 467999999887654432222 111111222225566666
Q ss_pred cCccCCCCCCCeEEEEECCCC
Q psy2979 349 GGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 349 GG~~~~~~~~~~v~~yd~~~~ 369 (400)
|+. + ..+..||..+.
T Consensus 315 ~~~-~-----g~i~~~d~~~~ 329 (615)
T 1pgu_A 315 LSL-D-----GTLNFYELGHD 329 (615)
T ss_dssp EET-T-----SCEEEEETTEE
T ss_pred EEC-C-----CCEEEEECCCC
Confidence 665 2 46888888763
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.73 Score=41.74 Aligned_cols=186 Identities=10% Similarity=0.011 Sum_probs=91.9
Q ss_pred EEEEeecCEEEEEECCCCC------eE-EccCCC-CcceeeeEEEE-C-CEEEEEcccCCCCCCCeEEEEeCCCCceEEc
Q psy2979 160 IYCLDIVDIVYVAASMHKI------LH-SLGSLK-FDFDVSGIAML-D-GFVYAVGGWDGSCRLDSVERYDPTKNEWSYI 229 (400)
Q Consensus 160 iyv~~~~~~~~~yd~~~~~------w~-~~~~~~-~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 229 (400)
++.......+..+|..+.+ -. ...... ....-.+++.. + +.+++.|+.+ ..+..||..+++....
T Consensus 129 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~~~~~ 203 (416)
T 2pm9_A 129 LASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSS-----NFASIWDLKAKKEVIH 203 (416)
T ss_dssp EEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSS-----SCEEEEETTTTEEEEE
T ss_pred EEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCC-----CCEEEEECCCCCcceE
Confidence 3333445678888887764 11 111111 11111222222 2 5677777755 3588999988765443
Q ss_pred cCCCC-----cccccEEEEe-C-CEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCC--CCceeeeEEEE--CCeEE
Q psy2979 230 EPMKL-----AVTSPAVVAH-E-GMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPML--IPRSGAAICAL--DSCIY 298 (400)
Q Consensus 230 ~~l~~-----~~~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~--~~r~~~~~~~~--~~~iy 298 (400)
-..+. ...-.+++.. + ..+++.|+. ++. ...+..||..+..- .+..+. ....-.+++.. ++.++
T Consensus 204 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~-~~~i~~~d~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l 278 (416)
T 2pm9_A 204 LSYTSPNSGIKQQLSVVEWHPKNSTRVATATG---SDN-DPSILIWDLRNANT-PLQTLNQGHQKGILSLDWCHQDEHLL 278 (416)
T ss_dssp ECCCCCSSCCCCCEEEEEECSSCTTEEEEEEC---CSS-SCCCCEEETTSTTS-CSBCCCSCCSSCEEEEEECSSCSSCE
T ss_pred EeccccccccCCceEEEEECCCCCCEEEEEEC---CCC-CceEEEEeCCCCCC-CcEEeecCccCceeEEEeCCCCCCeE
Confidence 33221 1111122222 3 357777766 321 12578888876431 111222 11111222222 56777
Q ss_pred EEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CC-EEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 299 VLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DG-KIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 299 v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~-~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
+.|+. ...+..||..+.+-... ++........+.+ ++ ++++.|+. + ..|.+||..+.
T Consensus 279 ~s~~~------dg~v~~wd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~~l~s~~~-d-----~~i~iw~~~~~ 338 (416)
T 2pm9_A 279 LSSGR------DNTVLLWNPESAEQLSQ--FPARGNWCFKTKFAPEAPDLFACASF-D-----NKIEVQTLQNL 338 (416)
T ss_dssp EEEES------SSEEEEECSSSCCEEEE--EECSSSCCCCEEECTTCTTEEEECCS-S-----SEEEEEESCCC
T ss_pred EEEeC------CCCEEEeeCCCCcccee--ecCCCCceEEEEECCCCCCEEEEEec-C-----CcEEEEEccCC
Confidence 77776 46799999887653221 1111111112222 44 67777776 2 45777887654
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=1.6 Score=46.27 Aligned_cols=218 Identities=11% Similarity=0.009 Sum_probs=104.8
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEEE---CCE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML---DGF 200 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~---~~~ 200 (400)
..+.+||..+++....-. .....-.+++.. ++..+........+..+|..+++....-.. ....-.+++.. ++.
T Consensus 637 ~~i~vw~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~ 714 (1249)
T 3sfz_A 637 KTLQVFKAETGEKLLDIK-AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDE-HSEQVNCCHFTNKSNHL 714 (1249)
T ss_dssp SCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECSSSSCC
T ss_pred CeEEEEECCCCCEEEEec-cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcC-CCCcEEEEEEecCCCce
Confidence 468888888776432111 111112233333 333133335556788899887764321111 11111122222 334
Q ss_pred EEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccC
Q psy2979 201 VYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAP 280 (400)
Q Consensus 201 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~ 280 (400)
+++.|+.+ ..+..||..+++....-.-........+..-++..++.|+. ++ .+..||..+..-...-.
T Consensus 715 ~l~sg~~d-----~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~---dg----~v~vwd~~~~~~~~~~~ 782 (1249)
T 3sfz_A 715 LLATGSND-----FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA---DG----TLRLWDVRSANERKSIN 782 (1249)
T ss_dssp EEEEEETT-----SCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES---SS----EEEEEEGGGTEEEEEEE
T ss_pred EEEEEeCC-----CeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC---CC----eEEEEeCCCCcccceec
Confidence 55556644 35888998887643321111111111112236667777776 43 68888876654322111
Q ss_pred CCC------------C-ceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEE
Q psy2979 281 MLI------------P-RSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKI 345 (400)
Q Consensus 281 ~~~------------~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l 345 (400)
... . .....+..-++..+++++ .+.+..||..+............ .....+.+ ++++
T Consensus 783 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-------~~~v~~~d~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~ 854 (1249)
T 3sfz_A 783 VKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-------KNKVLLFDIHTSGLLAEIHTGHH-STIQYCDFSPYDHL 854 (1249)
T ss_dssp CCCCC--------CCCCCBCCCCBCTTSSEEEEEE-------TTEEEEEETTTCCEEEEEECSSS-SCCCEEEECSSTTE
T ss_pred ccccccccCCccccccceEEEEEECCCCCEEEEEc-------CCcEEEEEecCCCceeEEcCCCC-CceEEEEEcCCCCE
Confidence 000 0 000111122556555554 35788999888765443221111 11122222 5667
Q ss_pred EEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 346 YVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 346 yv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
.++|+. + ..|.+||..+..
T Consensus 855 l~~~~~-d-----g~v~vwd~~~~~ 873 (1249)
T 3sfz_A 855 AVIALS-Q-----YCVELWNIDSRL 873 (1249)
T ss_dssp EEEECS-S-----SCEEEEETTTTE
T ss_pred EEEEeC-C-----CeEEEEEcCCCc
Confidence 777765 2 358889988764
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=95.94 E-value=0.16 Score=44.78 Aligned_cols=67 Identities=19% Similarity=0.322 Sum_probs=38.9
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccc-cEEEEe-C--CEEEEEcCccccCCCCcceEEEEeCCCC-
Q psy2979 199 GFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTS-PAVVAH-E--GMLYVTGGAILEDGDGIEQVQRYNPKVN- 273 (400)
Q Consensus 199 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~-~~~~~~-~--~~iyv~GG~~~~~~~~~~~v~~yd~~~~- 273 (400)
+.+++.|+.+ ..+..||+.+++|.....+...... .+++.. + +.+++.|+. ++ .+..||..+.
T Consensus 71 ~~~l~s~s~D-----~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~---D~----~i~lwd~~~~~ 138 (316)
T 3bg1_A 71 GNILASCSYD-----RKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSS---DG----AISLLTYTGEG 138 (316)
T ss_dssp SSCEEEEETT-----SCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECS---SS----CEEEEEECSSS
T ss_pred CCEEEEEECC-----CEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcC---CC----CEEEEecCCCC
Confidence 5666777765 4588899988777544332211111 122222 2 567788877 54 5777777654
Q ss_pred ceee
Q psy2979 274 QWQD 277 (400)
Q Consensus 274 ~W~~ 277 (400)
.|..
T Consensus 139 ~~~~ 142 (316)
T 3bg1_A 139 QWEV 142 (316)
T ss_dssp CEEE
T ss_pred Ccce
Confidence 4643
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.7 Score=40.42 Aligned_cols=185 Identities=16% Similarity=0.211 Sum_probs=94.4
Q ss_pred ceEEEEEcC-CCceEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCC--eEEccCCCCcceeeeEEE-ECC
Q psy2979 125 RSVEGFCVK-TKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKI--LHSLGSLKFDFDVSGIAM-LDG 199 (400)
Q Consensus 125 ~~~~~yd~~-~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~--w~~~~~~~~~r~~~~~~~-~~~ 199 (400)
..+..||+. ...|..-. +... ..+.+.. ++. +|+......++.||+. ++ |....+ ... ..+.+. -++
T Consensus 117 ~~l~~~d~~g~~~~~~~~--~~~~-~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~--~~~-~~~~~~d~~g 188 (330)
T 3hxj_A 117 GHLYAINTDGTEKWRFKT--KKAI-YATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTN--DAI-TSAASIGKDG 188 (330)
T ss_dssp SEEEEECTTSCEEEEEEC--SSCC-CSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECS--SCC-CSCCEECTTC
T ss_pred CEEEEEcCCCCEEEEEcC--CCce-eeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecC--CCc-eeeeEEcCCC
Confidence 367888887 22365432 2111 1223333 556 7876555789999998 44 543221 111 122233 367
Q ss_pred EEEEEcccCCCCCCCeEEEEeCCC-CceEEccCCCCcccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCc-ee
Q psy2979 200 FVYAVGGWDGSCRLDSVERYDPTK-NEWSYIEPMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ-WQ 276 (400)
Q Consensus 200 ~iyv~GG~~~~~~~~~v~~yd~~~-~~W~~~~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~-W~ 276 (400)
.||+.. ..+.+||... ..|+...+ ... ..+.+. -++.||+.... ..+.+||+.... |+
T Consensus 189 ~l~v~t--------~~l~~~d~~g~~~~~~~~~--~~~-~~~~~~~~~g~l~v~t~~--------~gl~~~~~~g~~~~~ 249 (330)
T 3hxj_A 189 TIYFGS--------DKVYAINPDGTEKWNFYAG--YWT-VTRPAISEDGTIYVTSLD--------GHLYAINPDGTEKWR 249 (330)
T ss_dssp CEEEES--------SSEEEECTTSCEEEEECCS--SCC-CSCCEECTTSCEEEEETT--------TEEEEECTTSCEEEE
T ss_pred EEEEEe--------CEEEEECCCCcEEEEEccC--Ccc-eeceEECCCCeEEEEcCC--------CeEEEECCCCCEeEE
Confidence 787754 3488888442 24655422 111 122233 35688875422 268888875554 54
Q ss_pred eccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCC-eEEEccCCcCccCcceEEE-ECCEEEEEc
Q psy2979 277 DLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAEN-TWEYKSPMKEKRYRPGIAV-IDGKIYVLG 349 (400)
Q Consensus 277 ~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~-~W~~~~~~~~~~~~~~~~~-~~~~lyv~G 349 (400)
.-..-+ ... ..+.. ++.||+... ...+.+||+... .|..- ++.. ...+.+. -+|+||+.+
T Consensus 250 ~~~~~~--~~~-~~~~~~~g~l~v~t~-------~ggl~~~d~~g~~~~~~~--~~~~-~~~~~~~d~~g~l~~gt 312 (330)
T 3hxj_A 250 FKTGKR--IES-SPVIGNTDTIYFGSY-------DGHLYAINPDGTEKWNFE--TGSW-IIATPVIDENGTIYFGT 312 (330)
T ss_dssp EECSSC--CCS-CCEECTTSCEEEECT-------TCEEEEECTTSCEEEEEE--CSSC-CCSCCEECTTCCEEEEC
T ss_pred eeCCCC--ccc-cceEcCCCeEEEecC-------CCCEEEECCCCcEEEEEE--cCCc-cccceEEcCCCEEEEEc
Confidence 432211 111 22233 678887542 237999998533 46542 2222 1222333 478888844
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.82 Score=40.25 Aligned_cols=198 Identities=11% Similarity=0.014 Sum_probs=108.2
Q ss_pred ecCEEEEEECCCCCeEEccCCCCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCC----CceEEc-c-CCCCcc
Q psy2979 165 IVDIVYVAASMHKILHSLGSLKFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTK----NEWSYI-E-PMKLAV 236 (400)
Q Consensus 165 ~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~----~~W~~~-~-~l~~~~ 236 (400)
..+.+..+|+.+.....+-+ ....-.+++.- ++.||+.... ...+.++++.. .....+ + .+..+
T Consensus 8 ~~~~I~~i~~~~~~~~~~~~--~~~~p~g~~~d~~~~~ly~~D~~-----~~~I~~~~~~g~~~~~~~~~~~~~~~~~p- 79 (316)
T 1ijq_A 8 NRHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVISRDIQAP- 79 (316)
T ss_dssp CBSSEEEEETTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETT-----TTEEEEEEC--------CEEEECSSCSCC-
T ss_pred CCCeEEEEECCCcceEehhc--CCCceEEEEEEeCCCEEEEEECC-----CCcEEEEECCCCCCCcccEEEEeCCCCCc-
Confidence 34567888888877655432 11222344443 5789998542 35789999876 222222 1 12222
Q ss_pred cccEEEE--eCCEEEEEcCccccCCCCcceEEEEeCCCCceeecc--CCCCCceeeeEEE--ECCeEEEEcCcCCCCCCC
Q psy2979 237 TSPAVVA--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLA--PMLIPRSGAAICA--LDSCIYVLGGWHASTENT 310 (400)
Q Consensus 237 ~~~~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~ 310 (400)
.++++ .++.||+.-.. ...+.++|+....-..+. .+..| .++++ .++.||+..-.. .
T Consensus 80 --~glavd~~~~~ly~~d~~-------~~~I~~~~~~g~~~~~~~~~~~~~P---~~iavdp~~g~ly~~d~~~-----~ 142 (316)
T 1ijq_A 80 --DGLAVDWIHSNIYWTDSV-------LGTVSVADTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWGT-----P 142 (316)
T ss_dssp --CEEEEETTTTEEEEEETT-------TTEEEEEETTSSSEEEEEECTTCCE---EEEEEETTTTEEEEEECSS-----S
T ss_pred --CEEEEeecCCeEEEEECC-------CCEEEEEeCCCCceEEEEECCCCCc---ceEEeCCCCCEEEEEccCC-----C
Confidence 34444 47899998554 357899998765433332 23333 23333 378999886321 3
Q ss_pred CeEEEEECCCCeEEEccCCcCccCcceEEEE---CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCC-CCCCceee
Q psy2979 311 NRVECYHIAENTWEYKSPMKEKRYRPGIAVI---DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLP-SARSWLGC 386 (400)
Q Consensus 311 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~r~~~~~ 386 (400)
..++++++....-+.+... ....+...++ +++||+.-.. .+.|+++|+....-+.+...+ ....-.++
T Consensus 143 ~~I~~~~~dG~~~~~~~~~--~~~~P~gla~d~~~~~lY~~D~~------~~~I~~~d~dg~~~~~~~~~~~~~~~P~gi 214 (316)
T 1ijq_A 143 AKIKKGGLNGVDIYSLVTE--NIQWPNGITLDLLSGRLYWVDSK------LHSISSIDVNGGNRKTILEDEKRLAHPFSL 214 (316)
T ss_dssp CEEEEEETTSCCEEEEECS--SCSCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEEECTTTTSSEEEE
T ss_pred CeEEEEcCCCCCeEEEEEC--CCCCceEEEEeccCCEEEEEECC------CCeEEEEecCCCceEEEeecCCccCCcEEE
Confidence 5899999876544433221 1222333333 6899998643 368999998765444443221 11223566
Q ss_pred EEEcccccc
Q psy2979 387 VPLQIHKSQ 395 (400)
Q Consensus 387 ~~~~~~~~~ 395 (400)
++.++..|+
T Consensus 215 av~~~~ly~ 223 (316)
T 1ijq_A 215 AVFEDKVFW 223 (316)
T ss_dssp EEETTEEEE
T ss_pred EEECCEEEE
Confidence 665544443
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.53 Score=41.06 Aligned_cols=193 Identities=14% Similarity=0.125 Sum_probs=97.2
Q ss_pred EEEE-eecCEEEEEECCCCCeEEccCCCCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCc--
Q psy2979 160 IYCL-DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLA-- 235 (400)
Q Consensus 160 iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~-- 235 (400)
||+. .....++.+++ +++........ . .-.+++.- ++++|+.... ...+.+||+. ++.+.+......
T Consensus 59 l~~~d~~~~~i~~~~~-~g~~~~~~~~~-~-~~~gl~~d~dG~l~v~~~~-----~~~v~~~~~~-g~~~~~~~~~~~~~ 129 (305)
T 3dr2_A 59 LVWSDLVGRRVLGWRE-DGTVDVLLDAT-A-FTNGNAVDAQQRLVHCEHG-----RRAITRSDAD-GQAHLLVGRYAGKR 129 (305)
T ss_dssp EEEEETTTTEEEEEET-TSCEEEEEESC-S-CEEEEEECTTSCEEEEETT-----TTEEEEECTT-SCEEEEECEETTEE
T ss_pred EEEEECCCCEEEEEeC-CCCEEEEeCCC-C-ccceeeECCCCCEEEEECC-----CCEEEEECCC-CCEEEEEeccCCCc
Confidence 5555 33457888888 44444332211 1 11222222 5678876321 1468889986 666655432111
Q ss_pred --ccccEEEEeCCEEEEE----cCccccCC----C-C-cceEEEEeCCCCceeeccCCCCCceeeeEEEE-CC-eEEEEc
Q psy2979 236 --VTSPAVVAHEGMLYVT----GGAILEDG----D-G-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DS-CIYVLG 301 (400)
Q Consensus 236 --~~~~~~~~~~~~iyv~----GG~~~~~~----~-~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~G 301 (400)
.....+..-+|.||+. |-.....+ . . ...+++||+.+.+++.+..+..+ .+++.. ++ .||+..
T Consensus 130 ~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~p---~gl~~spdg~~lyv~~ 206 (305)
T 3dr2_A 130 LNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDHP---NGLAFSPDEQTLYVSQ 206 (305)
T ss_dssp CSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEESSE---EEEEECTTSSEEEEEE
T ss_pred cCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecCCCC---cceEEcCCCCEEEEEe
Confidence 1122233347889986 32100000 0 1 35799999988887766411111 223333 44 478775
Q ss_pred CcCCCCCCCCeEEEEECCCCeEEE---ccCCcCccCcceEEEE-CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEe
Q psy2979 302 GWHASTENTNRVECYHIAENTWEY---KSPMKEKRYRPGIAVI-DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 302 G~~~~~~~~~~v~~yd~~~~~W~~---~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 374 (400)
....... ...+++||...+.... ....+.. ...+++.- +|+||+..+ +.|.+||+.......+
T Consensus 207 ~~~~~~~-~~~i~~~~~~~~~l~~~~~~~~~~~~-~pdgi~~d~~G~lwv~~~--------~gv~~~~~~g~~~~~~ 273 (305)
T 3dr2_A 207 TPEQGHG-SVEITAFAWRDGALHDRRHFASVPDG-LPDGFCVDRGGWLWSSSG--------TGVCVFDSDGQLLGHI 273 (305)
T ss_dssp CCC---C-CCEEEEEEEETTEEEEEEEEECCSSS-CCCSEEECTTSCEEECCS--------SEEEEECTTSCEEEEE
T ss_pred cCCcCCC-CCEEEEEEecCCCccCCeEEEECCCC-CCCeEEECCCCCEEEecC--------CcEEEECCCCCEEEEE
Confidence 4321111 2589999987665321 1111111 11122222 677887653 2599999976655554
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.89 E-value=1.5 Score=43.27 Aligned_cols=117 Identities=17% Similarity=0.174 Sum_probs=71.9
Q ss_pred EEEECCeEEEEEeecCEEEEEECCCCC--eEEccCCCCc--------ceeeeEEEECCEEEEEcccCCCCCCCeEEEEeC
Q psy2979 152 LVVSGRNTIYCLDIVDIVYVAASMHKI--LHSLGSLKFD--------FDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDP 221 (400)
Q Consensus 152 ~~~~~~~~iyv~~~~~~~~~yd~~~~~--w~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~ 221 (400)
-++.++. ||+......++.+|..+++ |+.-...+.. ....+.+..+++||+.+. ...+..+|.
T Consensus 66 P~v~~g~-vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~------dg~l~AlDa 138 (689)
T 1yiq_A 66 PIVVDGV-MYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL------DGRLEAIDA 138 (689)
T ss_dssp CEEETTE-EEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT------TSEEEEEET
T ss_pred CEEECCE-EEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc------CCEEEEEEC
Confidence 3456888 9998666789999998776 8764433211 012234567889988642 246889999
Q ss_pred CCCc--eEEccC-CCC--cccccEEEEeCCEEEEEcCccccCCCC-cceEEEEeCCCCc--eeec
Q psy2979 222 TKNE--WSYIEP-MKL--AVTSPAVVAHEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQ--WQDL 278 (400)
Q Consensus 222 ~~~~--W~~~~~-l~~--~~~~~~~~~~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~--W~~~ 278 (400)
.+++ |+.-.. -+. .....+-++.++.+|+..+. .... ...+..||..+.+ |+.-
T Consensus 139 ~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~---~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 139 KTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGG---AEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp TTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBC---TTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCC---CccCCCCEEEEEECCCCcEEEEec
Confidence 8874 876542 111 11122335678998874332 1111 3479999998776 8753
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.069 Score=47.35 Aligned_cols=154 Identities=14% Similarity=0.048 Sum_probs=79.1
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE-eCC-EEEEEcCccccCCCCcceEEEEeCCCCce
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA-HEG-MLYVTGGAILEDGDGIEQVQRYNPKVNQW 275 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~v~~yd~~~~~W 275 (400)
++.+|+.++.+ ..+.++|+.+++....-+++.....+.++. -++ .+|+.+.. ...+..||+.+.+.
T Consensus 10 ~~~~~v~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~-------~~~i~~~d~~t~~~ 77 (349)
T 1jmx_B 10 GHEYMIVTNYP-----NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH-------YGDIYGIDLDTCKN 77 (349)
T ss_dssp TCEEEEEEETT-----TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETT-------TTEEEEEETTTTEE
T ss_pred CCEEEEEeCCC-----CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCC-------CCcEEEEeCCCCcE
Confidence 56788877643 568999999887644333332112233333 344 58887654 24799999988765
Q ss_pred eeccCCCC-----CceeeeEEEE-CCeEEEEcCcC------CC-CCCCCeEEEEECCCCeEEE-ccCCcCccCcceEEE-
Q psy2979 276 QDLAPMLI-----PRSGAAICAL-DSCIYVLGGWH------AS-TENTNRVECYHIAENTWEY-KSPMKEKRYRPGIAV- 340 (400)
Q Consensus 276 ~~~~~~~~-----~r~~~~~~~~-~~~iyv~GG~~------~~-~~~~~~v~~yd~~~~~W~~-~~~~~~~~~~~~~~~- 340 (400)
...-..+. ...-..++.. +++.+++++.. .. .. ...+..||+.+++-.. +...+.+....+++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 156 (349)
T 1jmx_B 78 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK-PPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAA 156 (349)
T ss_dssp EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC-CCEEEEEEGGGGGGBCCSEEEECCSSCCCEEEC
T ss_pred EEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC-CCeEEEEECCCccccceeeeccCCCcccceeEC
Confidence 43222221 1111233333 45443343321 00 00 2589999987743111 111111222222222
Q ss_pred ECCEEEEEcCccCCCCCCCeEEEEECCCCcEEE
Q psy2979 341 IDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEI 373 (400)
Q Consensus 341 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~ 373 (400)
-++++|+.++ ++++||+.+++-..
T Consensus 157 ~dg~l~~~~~---------~i~~~d~~~~~~~~ 180 (349)
T 1jmx_B 157 DDGSLYVAGP---------DIYKMDVKTGKYTV 180 (349)
T ss_dssp TTSCEEEESS---------SEEEECTTTCCEEE
T ss_pred CCCcEEEccC---------cEEEEeCCCCceec
Confidence 2677777432 38999998876443
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=95.88 E-value=1.1 Score=44.25 Aligned_cols=237 Identities=11% Similarity=0.016 Sum_probs=116.3
Q ss_pred cceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEee-------------cCEEEEEECCCCCeE--EccCCC-
Q psy2979 124 LRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDI-------------VDIVYVAASMHKILH--SLGSLK- 186 (400)
Q Consensus 124 ~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~-------------~~~~~~yd~~~~~w~--~~~~~~- 186 (400)
..++.++|..+++......++.... ...+.. ++..|+.... ...++.++..++.-. .+...+
T Consensus 146 ~~~i~v~dl~tg~~~~~~~~~~~~~-~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~ 224 (695)
T 2bkl_A 146 EAVLHVIDVDSGEWSKVDVIEGGKY-ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTG 224 (695)
T ss_dssp CCEEEEEETTTCCBCSSCCBSCCTT-CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCC
T ss_pred eEEEEEEECCCCCCcCCcccCcccc-cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCC
Confidence 3578888988887541112221111 233333 4442333321 234888888766521 221111
Q ss_pred CcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceE
Q psy2979 187 FDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQV 265 (400)
Q Consensus 187 ~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v 265 (400)
.+....+...- +++..+++...+. ....++.+|..++.|..+..-.... ...+..++.+|+.... +.. ...+
T Consensus 225 ~~~~~~~~~~SpDG~~l~~~~~~~~-~~~~l~~~~~~~~~~~~l~~~~~~~--~~~~~~~g~l~~~s~~---~~~-~~~l 297 (695)
T 2bkl_A 225 DPTTFLQSDLSRDGKYLFVYILRGW-SENDVYWKRPGEKDFRLLVKGVGAK--YEVHAWKDRFYVLTDE---GAP-RQRV 297 (695)
T ss_dssp CTTCEEEEEECTTSCCEEEEEEETT-TEEEEEEECTTCSSCEEEEECSSCC--EEEEEETTEEEEEECT---TCT-TCEE
T ss_pred CCEEEEEEEECCCCCEEEEEEeCCC-CceEEEEEcCCCCceEEeecCCCce--EEEEecCCcEEEEECC---CCC-CCEE
Confidence 11222222222 4443333332211 2356777787777887775422222 1222245666666443 211 3579
Q ss_pred EEEeCCCCc---eeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEE-EE
Q psy2979 266 QRYNPKVNQ---WQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIA-VI 341 (400)
Q Consensus 266 ~~yd~~~~~---W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~-~~ 341 (400)
+.+|..+.. |+.+-+-........+...++.+++....++ ...++.+++..+.-..+. ++......++. .-
T Consensus 298 ~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg----~~~l~~~~~~g~~~~~l~-~~~~~~v~~~~~s~ 372 (695)
T 2bkl_A 298 FEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDA----TSEVRVATLKGKPVRTVQ-LPGVGAASNLMGLE 372 (695)
T ss_dssp EEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETT----EEEEEEEETTCCEEEECC-CSSSSEECCCBSCT
T ss_pred EEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECC----EEEEEEEeCCCCeeEEec-CCCCeEEEEeecCC
Confidence 999987654 8777543212222233344888888765433 457888997655444443 22111101110 01
Q ss_pred CC-EEEEEcCccCCCCCCCeEEEEECCCCcEEEecC
Q psy2979 342 DG-KIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSH 376 (400)
Q Consensus 342 ~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 376 (400)
++ .+++.... ...-..++.||..+++.+.+..
T Consensus 373 d~~~l~~~~ss---~~~P~~v~~~d~~~g~~~~l~~ 405 (695)
T 2bkl_A 373 DLDDAYYVFTS---FTTPRQIYKTSVSTGKSELWAK 405 (695)
T ss_dssp TCSEEEEEEEE---TTEEEEEEEEETTTCCEEEEEE
T ss_pred CCCEEEEEEcC---CCCCCEEEEEECCCCcEEEEec
Confidence 33 44443211 1223578999999888776654
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.29 Score=44.18 Aligned_cols=194 Identities=9% Similarity=-0.090 Sum_probs=97.8
Q ss_pred CEEEEEECCCCCeEEccCCCCcceeeeEEEE--CCE-EEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCccccc-EEE
Q psy2979 167 DIVYVAASMHKILHSLGSLKFDFDVSGIAML--DGF-VYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSP-AVV 242 (400)
Q Consensus 167 ~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~-~~~ 242 (400)
..++.+|+.+++...+.... ......... ++. |++............++.+|..++++..+.. ..+.... ..+
T Consensus 168 ~~l~~~d~~~g~~~~~~~~~--~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~ 244 (396)
T 3c5m_A 168 CRLIKVDIETGELEVIHQDT--AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE-HAEGESCTHEF 244 (396)
T ss_dssp EEEEEEETTTCCEEEEEEES--SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC-CCTTEEEEEEE
T ss_pred ceEEEEECCCCcEEeeccCC--cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec-cCCCccccceE
Confidence 36788888887766554311 111122222 243 5444321111122578999998888777654 2111111 112
Q ss_pred -EeCCE-EEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCeEEEEcCcCC-----------CCC
Q psy2979 243 -AHEGM-LYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSCIYVLGGWHA-----------STE 308 (400)
Q Consensus 243 -~~~~~-iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~-----------~~~ 308 (400)
.-+++ |+..+.. ++.....++.+|..+.+...+...+. .. ....- +++++++++... ...
T Consensus 245 ~spdg~~l~~~~~~---~~~~~~~l~~~d~~~g~~~~l~~~~~--~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~ 318 (396)
T 3c5m_A 245 WIPDGSAMAYVSYF---KGQTDRVIYKANPETLENEEVMVMPP--CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEN 318 (396)
T ss_dssp ECTTSSCEEEEEEE---TTTCCEEEEEECTTTCCEEEEEECCS--EE-EEEECSSSSEEEEEECCC----------CCCC
T ss_pred ECCCCCEEEEEecC---CCCccceEEEEECCCCCeEEeeeCCC--CC-CCccCCCCceEEEecCCcceeeccccccccCC
Confidence 22454 4444221 22112359999998887776654442 12 23333 677666654221 011
Q ss_pred CCCeEEEEECCCCeEEEccCCcCcc----------CcceEEEECC-EEEEEcCccCCCCCCCeEEEEECCCCcEEEe
Q psy2979 309 NTNRVECYHIAENTWEYKSPMKEKR----------YRPGIAVIDG-KIYVLGGEEGWDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 309 ~~~~v~~yd~~~~~W~~~~~~~~~~----------~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 374 (400)
...++.+|+.+++...+...+... .......-+| +|+..... . ....++.+|..++.++..
T Consensus 319 -~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~-~---~~~~l~~~~~~~~~~~~~ 390 (396)
T 3c5m_A 319 -DPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDF-E---GVPAIYIADVPESYKHLE 390 (396)
T ss_dssp -CCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT-T---SSCEEEEEECCTTCC---
T ss_pred -CCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecC-C---CCceEEEEEEcccccccc
Confidence 468999999888765554332210 1111112244 45554432 2 235799999988877665
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.93 Score=40.47 Aligned_cols=170 Identities=12% Similarity=0.084 Sum_probs=85.0
Q ss_pred EEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEEE---CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcc
Q psy2979 160 IYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML---DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAV 236 (400)
Q Consensus 160 iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~ 236 (400)
++.......+..+|..+++....-.- ....-.++... ++..++.|+.+ ..+..||..+++....-......
T Consensus 169 l~t~s~D~~v~lwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~g~~l~sgs~D-----g~v~~wd~~~~~~~~~~~~h~~~ 242 (354)
T 2pbi_B 169 ILTASGDGTCALWDVESGQLLQSFHG-HGADVLCLDLAPSETGNTFVSGGCD-----KKAMVWDMRSGQCVQAFETHESD 242 (354)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECCCSSCCEEEEEETT-----SCEEEEETTTCCEEEEECCCSSC
T ss_pred EEEEeCCCcEEEEeCCCCeEEEEEcC-CCCCeEEEEEEeCCCCCEEEEEeCC-----CeEEEEECCCCcEEEEecCCCCC
Confidence 33335556788889887654321100 00011111111 34677777766 35888999887654322111111
Q ss_pred cccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeE
Q psy2979 237 TSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRV 313 (400)
Q Consensus 237 ~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v 313 (400)
. .+++. -++..++.|+. ++ .+..||..+..-...-...........+.. ++.+++.|+. ...+
T Consensus 243 v-~~v~~~p~~~~l~s~s~---D~----~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~------d~~i 308 (354)
T 2pbi_B 243 V-NSVRYYPSGDAFASGSD---DA----TCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYN------DYTI 308 (354)
T ss_dssp E-EEEEECTTSSEEEEEET---TS----CEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET------TSCE
T ss_pred e-EEEEEeCCCCEEEEEeC---CC----eEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEEC------CCcE
Confidence 1 11222 25777788887 54 688899877643222111111112222222 6777777765 4578
Q ss_pred EEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCc
Q psy2979 314 ECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGE 351 (400)
Q Consensus 314 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~ 351 (400)
..||..+++-.. .+.........+.+ +++.++.|+.
T Consensus 309 ~vwd~~~~~~~~--~l~~h~~~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 309 NVWDVLKGSRVS--ILFGHENRVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp EEEETTTCSEEE--EECCCSSCEEEEEECTTSSCEEEEET
T ss_pred EEEECCCCceEE--EEECCCCcEEEEEECCCCCEEEEEcC
Confidence 899987654221 11111111222233 6666777765
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.32 Score=43.95 Aligned_cols=217 Identities=10% Similarity=0.033 Sum_probs=98.0
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEE--CCeEEEEEeecCEEEEEECCCCCeEEccCCCCc-ceeeeEEEE-CC-
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVS--GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFD-FDVSGIAML-DG- 199 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~--~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~-r~~~~~~~~-~~- 199 (400)
..+..||..+++.......+........... ++..+++......+..||..+.+... .+... ..-.+++.. ++
T Consensus 122 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~ 199 (408)
T 4a11_B 122 KTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH--ILQGHRQEILAVSWSPRYD 199 (408)
T ss_dssp SEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCE--EECCCCSCEEEEEECSSCT
T ss_pred CeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceee--eecCCCCcEEEEEECCCCC
Confidence 4688888887764433222222221111111 12213333455678888887654221 11111 111122222 33
Q ss_pred EEEEEcccCCCCCCCeEEEEeCCCCc--eEEccC--------CC---Ccccc-cEEEEe--CCEEEEEcCccccCCCCcc
Q psy2979 200 FVYAVGGWDGSCRLDSVERYDPTKNE--WSYIEP--------MK---LAVTS-PAVVAH--EGMLYVTGGAILEDGDGIE 263 (400)
Q Consensus 200 ~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~--------l~---~~~~~-~~~~~~--~~~iyv~GG~~~~~~~~~~ 263 (400)
.+++.|+.++ .+..||..+.. ...+.. .. ..... .....+ ++..++.|+. ++
T Consensus 200 ~ll~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg---- 267 (408)
T 4a11_B 200 YILATASADS-----RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT---DN---- 267 (408)
T ss_dssp TEEEEEETTS-----CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET---TS----
T ss_pred cEEEEEcCCC-----cEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC---CC----
Confidence 3677777653 47788876543 111110 00 11111 112222 5667777776 44
Q ss_pred eEEEEeCCCCceeeccC-----CCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceE
Q psy2979 264 QVQRYNPKVNQWQDLAP-----MLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGI 338 (400)
Q Consensus 264 ~v~~yd~~~~~W~~~~~-----~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~ 338 (400)
.+..||..+..-..... ..............+..+++++. ...+..||..+.+-... +.........
T Consensus 268 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~v~d~~~~~~~~~--~~~~~~~v~~ 339 (408)
T 4a11_B 268 RMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY------GSTIAVYTVYSGEQITM--LKGHYKTVDC 339 (408)
T ss_dssp CEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE------TTEEEEEETTTCCEEEE--ECCCSSCEEE
T ss_pred eEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEec------CCEEEEEECcCCcceee--eccCCCeEEE
Confidence 68999987765322210 01111111111112333344433 35788899877653322 1111111122
Q ss_pred EEE--CCEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 339 AVI--DGKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 339 ~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
+.+ ++++++.|+. + ..|.+||+.+.
T Consensus 340 ~~~s~~~~~l~s~~~-d-----g~i~iw~~~~~ 366 (408)
T 4a11_B 340 CVFQSNFQELYSGSR-D-----CNILAWVPSLY 366 (408)
T ss_dssp EEEETTTTEEEEEET-T-----SCEEEEEECC-
T ss_pred EEEcCCCCEEEEECC-C-----CeEEEEeCCCC
Confidence 222 6677777776 2 35778887764
|
| >1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.34 Score=45.09 Aligned_cols=147 Identities=12% Similarity=0.058 Sum_probs=83.3
Q ss_pred eEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEE--c----cCCCCcccccEEEE--eCCEEEEEcCccccCCCCcce
Q psy2979 193 GIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSY--I----EPMKLAVTSPAVVA--HEGMLYVTGGAILEDGDGIEQ 264 (400)
Q Consensus 193 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~--~----~~l~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~ 264 (400)
+++.+++.+|++-| ..+|+++.....+.. + +.||... . ++.. .++++|++-|. .
T Consensus 267 Ai~~~~ge~y~Fkg-------~~~wr~~~~~~~~~p~~I~~~Wp~LP~~i-D-Aa~~~~~~g~~~fFKg~---------~ 328 (450)
T 1su3_A 267 AITTIRGEVMFFKD-------RFYMRTNPFYPEVELNFISVFWPQLPNGL-E-AAYEFADRDEVRFFKGN---------K 328 (450)
T ss_dssp EEEEETTEEEEEET-------TEEEECCTTSSSCEEEEGGGTCTTSCSSC-C-EEEEEGGGTEEEEEETT---------E
T ss_pred eEEecCCeEEEEeC-------CEEEEEcCCCCcccceehhHhccCCCCCe-e-EEEEEcCCCeEEEEeCC---------E
Confidence 45668999999977 446666654433321 1 2344322 1 2222 37999999887 6
Q ss_pred EEEEeCCCCc--e-eecc---CCCC-CceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEE-----cc-CC
Q psy2979 265 VQRYNPKVNQ--W-QDLA---PMLI-PRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEY-----KS-PM 329 (400)
Q Consensus 265 v~~yd~~~~~--W-~~~~---~~~~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~-----~~-~~ 329 (400)
+|+|+..+-. + ..+. .+|. +..-=++... ++++|++-|. ..|+||..+++-.. +. ..
T Consensus 329 ~W~~~~~~~~~gyP~~i~~~~g~P~~~~~IDAA~~~~~~~k~yfFkG~--------~yw~yd~~~~~~~~gYPk~I~~~f 400 (450)
T 1su3_A 329 YWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVAN--------KYWRYDEYKRSMDPGYPKMIAHDF 400 (450)
T ss_dssp EEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEETT--------EEEEEETTTTEECSSCSEEHHHHS
T ss_pred EEEecCCcccCCCceeeehhhcCCCCCCccceEEEEcCCCeEEEEeCC--------EEEEEeCCCccccCCCCcchhhcC
Confidence 8888753210 0 0111 1221 1111122233 6899999863 89999987654221 11 11
Q ss_pred c-CccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEE
Q psy2979 330 K-EKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEI 373 (400)
Q Consensus 330 ~-~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~ 373 (400)
| .+..--++...++++|+|-|. ..|+||..+.+=..
T Consensus 401 pgip~~iDAA~~~~g~~YFFkg~--------~ywr~d~~~~~v~~ 437 (450)
T 1su3_A 401 PGIGHKVDAVFMKDGFFYFFHGT--------RQYKFDPKTKRILT 437 (450)
T ss_dssp TTSCSCCSEEEEETTEEEEEETT--------EEEEEETTTTEEEE
T ss_pred CCCCCCccEEEEcCCeEEEEeCC--------EEEEEECCcceEec
Confidence 1 122223344568999999886 67999998876544
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.96 Score=39.87 Aligned_cols=190 Identities=11% Similarity=0.157 Sum_probs=89.9
Q ss_pred ecCEEEEEECCCCCeEEccCCC---CcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCC-----ceEEccCCCCc
Q psy2979 165 IVDIVYVAASMHKILHSLGSLK---FDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKN-----EWSYIEPMKLA 235 (400)
Q Consensus 165 ~~~~~~~yd~~~~~w~~~~~~~---~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~-----~W~~~~~l~~~ 235 (400)
....+..+|..++.+.....+. ....-.+++.. ++.+++.|+.++ .+..||.... ++..+..+...
T Consensus 32 ~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~-----~v~iw~~~~~~~~~~~~~~~~~~~~h 106 (330)
T 2hes_X 32 TDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS-----TVSIWAKEESADRTFEMDLLAIIEGH 106 (330)
T ss_dssp SSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS-----CEEEEEC-------CCCEEEEEEC--
T ss_pred CCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC-----cEEEEEcccCcCccccceeEEEEcCC
Confidence 3355677777665444333221 11111122221 566777777653 4777776432 22222212111
Q ss_pred ccccEEEE--eCCEEEEEcCccccCCCCcceEEEEeCCC--CceeeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCC
Q psy2979 236 VTSPAVVA--HEGMLYVTGGAILEDGDGIEQVQRYNPKV--NQWQDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTEN 309 (400)
Q Consensus 236 ~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~--~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~ 309 (400)
...-..+. -+++.++.|+. ++ .+..||... ..+..+..+.........+.. ++.+++.|+.
T Consensus 107 ~~~V~~v~~sp~g~~las~s~---D~----~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~------ 173 (330)
T 2hes_X 107 ENEVKGVAWSNDGYYLATCSR---DK----SVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSY------ 173 (330)
T ss_dssp --CEEEEEECTTSCEEEEEET---TS----CEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEET------
T ss_pred CCcEEEEEECCCCCEEEEEeC---CC----EEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcC------
Confidence 11111122 26777777777 54 688888742 334433322221111222222 5677777776
Q ss_pred CCeEEEEECCCCeEEEccCCcCccCcceEEEE--C--CEEEEEcCccCCCCCCCeEEEEECCC------CcEEEecCCC
Q psy2979 310 TNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--D--GKIYVLGGEEGWDGYHDSIECYDVDN------DSWEIMSHLP 378 (400)
Q Consensus 310 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~--~~lyv~GG~~~~~~~~~~v~~yd~~~------~~W~~~~~~~ 378 (400)
...+..+|..++.|..+..+......-..+.+ + +..++.|+. + ..|.+||..+ ..|.....++
T Consensus 174 D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-D-----~~v~iw~~~~~~~~~~~~~~~~~~~~ 246 (330)
T 2hes_X 174 DDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD-D-----STVRVWKYMGDDEDDQQEWVCEAILP 246 (330)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET-T-----SCEEEEEEEEECTTSCEEEEEEEECC
T ss_pred CCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC-C-----CeEEEEEecCCCccccceeEEeeecc
Confidence 45688888877777665544322222222233 2 445566665 2 2455665533 2466555444
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=95.69 E-value=0.68 Score=44.50 Aligned_cols=190 Identities=11% Similarity=0.044 Sum_probs=91.7
Q ss_pred CCeEEEEEeecCEEEEEECCCC----C-eEEccCCCCcce-eeeEEE-E--CCEEEEEcccCCCCCCCeEEEEeCCCC--
Q psy2979 156 GRNTIYCLDIVDIVYVAASMHK----I-LHSLGSLKFDFD-VSGIAM-L--DGFVYAVGGWDGSCRLDSVERYDPTKN-- 224 (400)
Q Consensus 156 ~~~~iyv~~~~~~~~~yd~~~~----~-w~~~~~~~~~r~-~~~~~~-~--~~~iyv~GG~~~~~~~~~v~~yd~~~~-- 224 (400)
++. .+++.....+..||..++ + -..+..- ... -.+++. - +++.++.|+.+ ..+..||..++
T Consensus 29 dg~-~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h--~~~~v~~~~~sp~~~~~~l~s~~~d-----g~v~vw~~~~~~~ 100 (615)
T 1pgu_A 29 TTN-AIAYPCGKSAFVRCLDDGDSKVPPVVQFTGH--GSSVVTTVKFSPIKGSQYLCSGDES-----GKVIVWGWTFDKE 100 (615)
T ss_dssp TTT-EEEEEETTEEEEEECCSSCCSSCSEEEECTT--TTSCEEEEEECSSTTCCEEEEEETT-----SEEEEEEEEEEGG
T ss_pred CCC-EEEEecCCeEEEEECCCCCCccccceEEecC--CCceEEEEEECcCCCCCEEEEecCC-----CEEEEEeCCCCcc
Confidence 344 444444567888888765 2 1222111 111 122222 2 56777777754 35778887644
Q ss_pred ----ceEEccCCCCccccc-EEE-EeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCe-
Q psy2979 225 ----EWSYIEPMKLAVTSP-AVV-AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSC- 296 (400)
Q Consensus 225 ----~W~~~~~l~~~~~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~- 296 (400)
.......+....... +++ .-+++..++++. +......++.||... .-..+..-.. .-.++... ++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---~~~~~~~v~~~d~~~-~~~~~~~~~~--~v~~~~~~~~~~~ 174 (615)
T 1pgu_A 101 SNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE---GRDNFGVFISWDSGN-SLGEVSGHSQ--RINACHLKQSRPM 174 (615)
T ss_dssp GTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEEC---CSSCSEEEEETTTCC-EEEECCSCSS--CEEEEEECSSSSC
T ss_pred cccccccccchhhcccccEEEEEEeCCCCEEEEecc---CCCCccEEEEEECCC-cceeeecCCc--cEEEEEECCCCCc
Confidence 333332222111111 121 235666666665 322134677777322 2222211111 11122222 443
Q ss_pred EEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccC---cceEEEE--C-CEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 297 IYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRY---RPGIAVI--D-GKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 297 iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~---~~~~~~~--~-~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
+++.|+. ...+..||..+.+-... +..... ....+.+ + ++.++.|+. + ..|.+||..+++
T Consensus 175 ~l~~~~~------d~~v~vwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d-----g~i~vwd~~~~~ 240 (615)
T 1pgu_A 175 RSMTVGD------DGSVVFYQGPPFKFSAS--DRTHHKQGSFVRDVEFSPDSGEFVITVGS-D-----RKISCFDGKSGE 240 (615)
T ss_dssp EEEEEET------TTEEEEEETTTBEEEEE--ECSSSCTTCCEEEEEECSTTCCEEEEEET-T-----CCEEEEETTTCC
T ss_pred EEEEEeC------CCcEEEEeCCCcceeee--ecccCCCCceEEEEEECCCCCCEEEEEeC-C-----CeEEEEECCCCC
Confidence 6777765 46889999877654332 221111 2223333 5 677777776 2 468999988776
Q ss_pred EEE
Q psy2979 371 WEI 373 (400)
Q Consensus 371 W~~ 373 (400)
...
T Consensus 241 ~~~ 243 (615)
T 1pgu_A 241 FLK 243 (615)
T ss_dssp EEE
T ss_pred EeE
Confidence 443
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.66 Score=45.00 Aligned_cols=120 Identities=11% Similarity=0.138 Sum_probs=71.0
Q ss_pred EEEECCEEEEEcccCCCCCCCeEEEEeC-CCC--ceEEccCCCCc--------ccccEEEE--eCCE----EEEEcCccc
Q psy2979 194 IAMLDGFVYAVGGWDGSCRLDSVERYDP-TKN--EWSYIEPMKLA--------VTSPAVVA--HEGM----LYVTGGAIL 256 (400)
Q Consensus 194 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~-~~~--~W~~~~~l~~~--------~~~~~~~~--~~~~----iyv~GG~~~ 256 (400)
-++.++.||+.+.. ...+..+|. .++ .|+.-...+.. ....+.++ .+++ ||+....
T Consensus 58 P~v~~g~vyv~~~~-----~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~d-- 130 (599)
T 1w6s_A 58 PLVVDGKMYIHTSF-----PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLD-- 130 (599)
T ss_dssp CEEETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTT--
T ss_pred cEEECCEEEEEeCC-----CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCC--
Confidence 34569999998652 235899999 776 48876543321 11223455 6777 8876432
Q ss_pred cCCCCcceEEEEeCCCCc--eeeccCCCCC--ceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCe--EEEcc
Q psy2979 257 EDGDGIEQVQRYNPKVNQ--WQDLAPMLIP--RSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENT--WEYKS 327 (400)
Q Consensus 257 ~~~~~~~~v~~yd~~~~~--W~~~~~~~~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~ 327 (400)
..++++|..+.+ |+.-..-... ....+-++.++.+|+-.+..+... ...+..||..+++ |+.-.
T Consensus 131 ------g~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~-~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 131 ------GNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGV-RGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp ------SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTC-CCEEEEEETTTCCEEEEEES
T ss_pred ------CEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCC-CCeEEEEECCCCcEEEEEcC
Confidence 368999987765 8753211100 112233456888876443211112 4689999998775 87654
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=95.66 E-value=0.97 Score=39.24 Aligned_cols=185 Identities=12% Similarity=0.035 Sum_probs=86.6
Q ss_pred EEEEeccCCCcccceEEEEEcCCCceEE-ccCCcccceeeeEEEECCeEEEEE-eecCEEEEEECCCCCeEEccCCC-Cc
Q psy2979 112 IIAVGGEDDKVVLRSVEGFCVKTKVWKT-LSCLPFAISKHGLVVSGRNTIYCL-DIVDIVYVAASMHKILHSLGSLK-FD 188 (400)
Q Consensus 112 i~~~gg~~~~~~~~~~~~yd~~~~~w~~-~~~~~~~~~~~~~~~~~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~-~~ 188 (400)
.++.|+.+ ..+.++|..+++-.. +.. ....-.+++...+..+++. .....+..+|..++. .....+. ..
T Consensus 69 ~l~s~s~d-----~~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-~~~~~~~~h~ 140 (304)
T 2ynn_A 69 WIIVGSDD-----FRIRVFNYNTGEKVVDFEA--HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-ALEQTFEGHE 140 (304)
T ss_dssp EEEEEETT-----SEEEEEETTTCCEEEEEEC--CSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT-EEEEEECCCC
T ss_pred EEEEECCC-----CEEEEEECCCCcEEEEEeC--CCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc-chhhhhcccC
Confidence 44555544 467888887765321 111 1111123333322212222 444567778876542 1111111 11
Q ss_pred ceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe---CCEEEEEcCccccCCCCcc
Q psy2979 189 FDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH---EGMLYVTGGAILEDGDGIE 263 (400)
Q Consensus 189 r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~~ 263 (400)
..-.+++.. ++.+++.|+.+ ..+..||..+.+-...-.......-..+... ++.+++.|+. ++
T Consensus 141 ~~v~~v~~~p~~~~~l~sgs~D-----~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~---D~---- 208 (304)
T 2ynn_A 141 HFVMCVAFNPKDPSTFASGCLD-----RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD---DL---- 208 (304)
T ss_dssp SCEEEEEECTTCTTEEEEEETT-----SEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET---TS----
T ss_pred CcEEEEEECCCCCCEEEEEeCC-----CeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC---CC----
Confidence 111222222 34677777765 4588888765431110000011111111111 4566777776 44
Q ss_pred eEEEEeCCCCceeeccCCCCCceeeeEEE--ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEE
Q psy2979 264 QVQRYNPKVNQWQDLAPMLIPRSGAAICA--LDSCIYVLGGWHASTENTNRVECYHIAENTWE 324 (400)
Q Consensus 264 ~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 324 (400)
.+..||..+.+-. ..+.........+. -++.+++.|+. ...+..||..+.+-.
T Consensus 209 ~i~iWd~~~~~~~--~~~~~h~~~v~~~~~~p~~~~l~s~s~------Dg~i~iWd~~~~~~~ 263 (304)
T 2ynn_A 209 TIKIWDYQTKSCV--ATLEGHMSNVSFAVFHPTLPIIISGSE------DGTLKIWNSSTYKVE 263 (304)
T ss_dssp EEEEEETTTTEEE--EEEECCSSCEEEEEECSSSSEEEEEET------TSCEEEEETTTCCEE
T ss_pred eEEEEeCCCCccc--eeeCCCCCCEEEEEECCCCCEEEEEcC------CCeEEEEECCCCcee
Confidence 7889998765422 11111111111222 25667777776 457889998877644
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.49 Score=41.77 Aligned_cols=136 Identities=10% Similarity=0.057 Sum_probs=68.3
Q ss_pred eecCEEEEEECCCCC--eEEccCCCC--cceeeeEE-----EECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCC
Q psy2979 164 DIVDIVYVAASMHKI--LHSLGSLKF--DFDVSGIA-----MLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKL 234 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~--w~~~~~~~~--~r~~~~~~-----~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~ 234 (400)
.....+..||..+++ ...+..... .+.-.+++ ..++.+++.|+.+ ..+..||..+.+-........
T Consensus 136 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~ 210 (357)
T 3i2n_A 136 SRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN-----GDIKLFDLRNMALRWETNIKN 210 (357)
T ss_dssp ETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT-----SEEEEEETTTTEEEEEEECSS
T ss_pred eCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccC-----CeEEEEECccCceeeecCCCC
Confidence 455678888887764 333322211 11222222 1356677777654 468899998876433322222
Q ss_pred cccccEEEEe----CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCC------CCCceeeeEEEE-CCe-EEEEcC
Q psy2979 235 AVTSPAVVAH----EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPM------LIPRSGAAICAL-DSC-IYVLGG 302 (400)
Q Consensus 235 ~~~~~~~~~~----~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~------~~~r~~~~~~~~-~~~-iyv~GG 302 (400)
. -.+++.. ++..+++|+. ++ .+..||..+.+ .+..+ .....-.++... ++. +++.|+
T Consensus 211 ~--v~~~~~~~~~~~~~~l~~~~~---dg----~i~i~d~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 279 (357)
T 3i2n_A 211 G--VCSLEFDRKDISMNKLVATSL---EG----KFHVFDMRTQH--PTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAG 279 (357)
T ss_dssp C--EEEEEESCSSSSCCEEEEEES---TT----EEEEEEEEEEE--TTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred c--eEEEEcCCCCCCCCEEEEECC---CC----eEEEEeCcCCC--cccceeeeccCCCcCCEEEEEECCCCCcEEEEEe
Confidence 2 1222322 5667777776 43 67788765432 11111 111112223333 455 677776
Q ss_pred cCCCCCCCCeEEEEECCCC
Q psy2979 303 WHASTENTNRVECYHIAEN 321 (400)
Q Consensus 303 ~~~~~~~~~~v~~yd~~~~ 321 (400)
. ...+..||..+.
T Consensus 280 ~------dg~i~iwd~~~~ 292 (357)
T 3i2n_A 280 G------AGGLHLWKYEYP 292 (357)
T ss_dssp T------TSEEEEEEEECC
T ss_pred C------CCcEEEeecCCC
Confidence 5 456777776543
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.60 E-value=1.2 Score=39.97 Aligned_cols=139 Identities=14% Similarity=0.063 Sum_probs=69.4
Q ss_pred eecCEEEEEECCCCCeEEccCCCCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCccccc-E
Q psy2979 164 DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSP-A 240 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~-~ 240 (400)
.....+..+|..+++....-..+.+......... ++.+++.|+.+ ..+..||..+.+-... +....... +
T Consensus 119 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~d~~~~~~~~~--~~~~~~~v~~ 191 (408)
T 4a11_B 119 SFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRG-----PKVQLCDLKSGSCSHI--LQGHRQEILA 191 (408)
T ss_dssp ETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESS-----SSEEEEESSSSCCCEE--ECCCCSCEEE
T ss_pred eCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCC-----CeEEEEeCCCcceeee--ecCCCCcEEE
Confidence 5556788899887664433332222111111111 33466666654 3588889876643211 11111111 2
Q ss_pred EEEe-CC-EEEEEcCccccCCCCcceEEEEeCCCCc--eeeccC------------CCCCceeeeEEEE--CCeEEEEcC
Q psy2979 241 VVAH-EG-MLYVTGGAILEDGDGIEQVQRYNPKVNQ--WQDLAP------------MLIPRSGAAICAL--DSCIYVLGG 302 (400)
Q Consensus 241 ~~~~-~~-~iyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~~~~------------~~~~r~~~~~~~~--~~~iyv~GG 302 (400)
++.. ++ .+++.|+. ++ .+..||..+.. ...+.. ..........+.. ++..++.|+
T Consensus 192 ~~~~~~~~~ll~~~~~---dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 264 (408)
T 4a11_B 192 VSWSPRYDYILATASA---DS----RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG 264 (408)
T ss_dssp EEECSSCTTEEEEEET---TS----CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred EEECCCCCcEEEEEcC---CC----cEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec
Confidence 2222 33 37777777 44 68888886543 111100 0111111122222 566677776
Q ss_pred cCCCCCCCCeEEEEECCCCe
Q psy2979 303 WHASTENTNRVECYHIAENT 322 (400)
Q Consensus 303 ~~~~~~~~~~v~~yd~~~~~ 322 (400)
. ...+..||..+.+
T Consensus 265 ~------dg~i~vwd~~~~~ 278 (408)
T 4a11_B 265 T------DNRMRLWNSSNGE 278 (408)
T ss_dssp T------TSCEEEEETTTCC
T ss_pred C------CCeEEEEECCCCc
Confidence 5 4578899988765
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=1.9 Score=42.04 Aligned_cols=210 Identities=15% Similarity=0.095 Sum_probs=122.2
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEE--CCeEEEEE-eecCEEEEEECCCCCeEEccCCCCcceeeeEEE--ECC
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVS--GRNTIYCL-DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAM--LDG 199 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~--~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~--~~~ 199 (400)
.++...++....-....+++......++++. ++. ||+. .....++.+++.....+.+..... ..-.++++ .++
T Consensus 15 ~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~-~~P~GlAvD~~~~ 92 (628)
T 4a0p_A 15 ADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGL-DYPEGMAVDWLGK 92 (628)
T ss_dssp TEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSC-SCCCEEEEETTTT
T ss_pred CcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCC-CCcceEEEEeCCC
Confidence 3567777766554433333333344556554 456 8988 445688899988766555433221 11123444 478
Q ss_pred EEEEEcccCCCCCCCeEEEEeCCCCceEEc--cCCCCcccccEEEEe--CCEEEEEc-CccccCCCCcceEEEEeCCCCc
Q psy2979 200 FVYAVGGWDGSCRLDSVERYDPTKNEWSYI--EPMKLAVTSPAVVAH--EGMLYVTG-GAILEDGDGIEQVQRYNPKVNQ 274 (400)
Q Consensus 200 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~--~~l~~~~~~~~~~~~--~~~iyv~G-G~~~~~~~~~~~v~~yd~~~~~ 274 (400)
+||+.-. ....++++++....-..+ ..+..|+ ++++. ++.||+.- |. ...|++.++....
T Consensus 93 ~LY~tD~-----~~~~I~v~~~dG~~~~~l~~~~l~~P~---~iavdp~~G~lY~tD~g~-------~~~I~r~~~dG~~ 157 (628)
T 4a0p_A 93 NLYWADT-----GTNRIEVSKLDGQHRQVLVWKDLDSPR---ALALDPAEGFMYWTEWGG-------KPKIDRAAMDGSE 157 (628)
T ss_dssp EEEEEET-----TTTEEEEEETTSTTCEEEECSSCCCEE---EEEEETTTTEEEEEECSS-------SCEEEEEETTSCS
T ss_pred EEEEEEC-----CCCEEEEEecCCCcEEEEEeCCCCCcc---cEEEccCCCeEEEeCCCC-------CCEEEEEeCCCCc
Confidence 9999733 235789999876543333 2333332 44443 78999985 32 3479999887665
Q ss_pred eeecc-CCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEcc-CCcCccCcceEEEECCEEEEEcC
Q psy2979 275 WQDLA-PMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEYKS-PMKEKRYRPGIAVIDGKIYVLGG 350 (400)
Q Consensus 275 W~~~~-~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~~~~~~~~~~~~~lyv~GG 350 (400)
-+.+. .+..| .+++.- +++||+.... .+.++++|+....=+.+. .++ ...++++.+++||+.--
T Consensus 158 ~~~l~~~~~~P---~GlalD~~~~~LY~aD~~------~~~I~~~d~dG~~~~v~~~~l~---~P~glav~~~~ly~tD~ 225 (628)
T 4a0p_A 158 RTTLVPNVGRA---NGLTIDYAKRRLYWTDLD------TNLIESSNMLGLNREVIADDLP---HPFGLTQYQDYIYWTDW 225 (628)
T ss_dssp CEEEECSCSSE---EEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEEECCS---CEEEEEEETTEEEEEET
T ss_pred eEEEECCCCCc---ceEEEccccCEEEEEECC------CCEEEEEcCCCCceEEeeccCC---CceEEEEECCEEEEecC
Confidence 54443 23222 233333 6899998754 678999998654323332 222 23467777899999753
Q ss_pred ccCCCCCCCeEEEEECCCC
Q psy2979 351 EEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 351 ~~~~~~~~~~v~~yd~~~~ 369 (400)
. ...|+++|..++
T Consensus 226 ~------~~~I~~~dk~tg 238 (628)
T 4a0p_A 226 S------RRSIERANKTSG 238 (628)
T ss_dssp T------TTEEEEEETTTC
T ss_pred C------CCEEEEEECCCC
Confidence 2 245666665443
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=95.56 E-value=2.1 Score=42.41 Aligned_cols=235 Identities=10% Similarity=-0.064 Sum_probs=110.6
Q ss_pred ceEEEEEcCCC---ceEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCCcce----------
Q psy2979 125 RSVEGFCVKTK---VWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFD---------- 190 (400)
Q Consensus 125 ~~~~~yd~~~~---~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~---------- 190 (400)
..++.+|..++ +..++.... ......+.. ++. ..++.....++.+|..+++...+........
T Consensus 129 ~~i~~~d~~~~~~~~~~~l~~~~--~~~~~~~~SPDG~-~la~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~ 205 (741)
T 2ecf_A 129 GELYLYDLKQEGKAAVRQLTHGE--GFATDAKLSPKGG-FVSFIRGRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVAD 205 (741)
T ss_dssp TEEEEEESSSCSTTSCCBCCCSS--SCEEEEEECTTSS-EEEEEETTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHH
T ss_pred CcEEEEECCCCCcceEEEcccCC--cccccccCCCCCC-EEEEEeCCcEEEEecCCCCEEEeccCCccceeccccceeee
Confidence 57889998877 544443221 112223333 455 3344345688999988877665543221100
Q ss_pred -----eeeEEE-ECCEEEEEcccCCC----------------------------CCCCeEEEEeCCC-CceEEccCC-CC
Q psy2979 191 -----VSGIAM-LDGFVYAVGGWDGS----------------------------CRLDSVERYDPTK-NEWSYIEPM-KL 234 (400)
Q Consensus 191 -----~~~~~~-~~~~iyv~GG~~~~----------------------------~~~~~v~~yd~~~-~~W~~~~~l-~~ 234 (400)
..+.+. -+++.++++..++. .....++.+|..+ ++-..+... ..
T Consensus 206 ~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 285 (741)
T 2ecf_A 206 EEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQ 285 (741)
T ss_dssp HHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCS
T ss_pred eccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCc
Confidence 011222 14443333322211 1122678889888 765544321 11
Q ss_pred ccc-ccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCC----ceeeeEEEECCeEEEEcCcCCCCCC
Q psy2979 235 AVT-SPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIP----RSGAAICALDSCIYVLGGWHASTEN 309 (400)
Q Consensus 235 ~~~-~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~----r~~~~~~~~~~~iyv~GG~~~~~~~ 309 (400)
... .....--+..|++.... .+.....++.+|+.+.+...+...... ........-++++++.+..++
T Consensus 286 ~~~~~~~~~pDg~~l~~~~~~---~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g---- 358 (741)
T 2ecf_A 286 DIYLARVNWRDPQHLSFQRQS---RDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTG---- 358 (741)
T ss_dssp SEEEEEEEEEETTEEEEEEEE---TTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTS----
T ss_pred ceEEEEEEeCCCCEEEEEEec---ccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCC----
Confidence 111 11112223345444321 111146799999988876655321111 011222233677666665432
Q ss_pred CCeEEEEECCCCeEEEccCCcCccCcceEEEE--CC-EEEEEcCccCCCCCCCeEEEEECCCCcEEEe
Q psy2979 310 TNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DG-KIYVLGGEEGWDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 310 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 374 (400)
...++.+|.... ...+...... ......+ ++ .|++.+.. ++ .....+|..+.....-+.+
T Consensus 359 ~~~l~~~~~~~~-~~~l~~~~~~--v~~~~~~s~dg~~l~~~~~~-~~-~~~~~l~~~~~~g~~~~~l 421 (741)
T 2ecf_A 359 FQHLYRIDSKGK-AAALTHGNWS--VDELLAVDEKAGLAYFRAGI-ES-ARESQIYAVPLQGGQPQRL 421 (741)
T ss_dssp SCEEEEECSSSC-EEESCCSSSC--EEEEEEEETTTTEEEEEECS-SC-TTCBEEEEEETTCCCCEEC
T ss_pred ccEEEEEcCCCC-eeeeeecceE--EEeEeEEeCCCCEEEEEEeC-CC-CceEEEEEEEcCCCCeeec
Confidence 457999997766 6555432211 1122112 44 56666543 21 1234566666544433333
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=95.56 E-value=2 Score=42.28 Aligned_cols=104 Identities=13% Similarity=0.100 Sum_probs=64.1
Q ss_pred ceEEEEEcCCCc--eEEccCCccc--------ceeeeEEEECCeEEEEEeecCEEEEEECCCCC--eEEccC-CCC--cc
Q psy2979 125 RSVEGFCVKTKV--WKTLSCLPFA--------ISKHGLVVSGRNTIYCLDIVDIVYVAASMHKI--LHSLGS-LKF--DF 189 (400)
Q Consensus 125 ~~~~~yd~~~~~--w~~~~~~~~~--------~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~--w~~~~~-~~~--~r 189 (400)
..+..+|..+++ |+.-...+.. ....+.++.++. ||+......++.+|..+++ |+.-.. -.. ..
T Consensus 87 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~ 165 (677)
T 1kb0_A 87 SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGK-VYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLT 165 (677)
T ss_dssp GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTE-EEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCB
T ss_pred CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCE-EEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcc
Confidence 478899998885 8754332211 112345666777 9988666789999998876 775432 110 11
Q ss_pred eeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCc--eEEc
Q psy2979 190 DVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNE--WSYI 229 (400)
Q Consensus 190 ~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~ 229 (400)
...+-++.++.+|+..+.........+..||..+++ |+.-
T Consensus 166 ~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~ 207 (677)
T 1kb0_A 166 ITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF 207 (677)
T ss_dssp CCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred cccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEec
Confidence 222344568888875442222234679999999875 7664
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=1.1 Score=39.24 Aligned_cols=195 Identities=16% Similarity=0.149 Sum_probs=102.5
Q ss_pred EEEEeecCEEEEEECCCCCeEEccCCC------------------CcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEE
Q psy2979 160 IYCLDIVDIVYVAASMHKILHSLGSLK------------------FDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERY 219 (400)
Q Consensus 160 iyv~~~~~~~~~yd~~~~~w~~~~~~~------------------~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~y 219 (400)
+|+-.....++.||+.++++....... ....-.+++.. ++.|||.... ..+.+|
T Consensus 33 l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~------~~i~~~ 106 (322)
T 2fp8_A 33 FYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY------YHLSVV 106 (322)
T ss_dssp EEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT------TEEEEE
T ss_pred EEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC------CCEEEE
Confidence 343344467888888877665443110 00122345544 5789987331 248889
Q ss_pred eCCCCceEEccCCCCc---ccccEEEE-e-CCEEEEEcCccccC----------CCCcceEEEEeCCCCceeecc-CCCC
Q psy2979 220 DPTKNEWSYIEPMKLA---VTSPAVVA-H-EGMLYVTGGAILED----------GDGIEQVQRYNPKVNQWQDLA-PMLI 283 (400)
Q Consensus 220 d~~~~~W~~~~~l~~~---~~~~~~~~-~-~~~iyv~GG~~~~~----------~~~~~~v~~yd~~~~~W~~~~-~~~~ 283 (400)
|+.+++.+.+...... ..-..+++ - +|.||+........ +.....+++||+.+.+.+.+. .+..
T Consensus 107 d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~ 186 (322)
T 2fp8_A 107 GSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHV 186 (322)
T ss_dssp CTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESC
T ss_pred eCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCcc
Confidence 9887766555322111 11122333 3 67899974320000 001357999999877765442 2222
Q ss_pred CceeeeEEEE-CC-eEEEEcCcCCCCCCCCeEEEEECCC---CeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCC-
Q psy2979 284 PRSGAAICAL-DS-CIYVLGGWHASTENTNRVECYHIAE---NTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWD- 355 (400)
Q Consensus 284 ~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~~---~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~- 355 (400)
| .+++.- ++ .||+.... ...+++|++.. ...+.+..++. +....+ +|.|||.... ...
T Consensus 187 p---~gia~~~dg~~lyv~d~~------~~~I~~~~~~~~~~~~~~~~~~~~g----P~gi~~d~~G~l~va~~~-~~~~ 252 (322)
T 2fp8_A 187 P---GGAEVSADSSFVLVAEFL------SHQIVKYWLEGPKKGTAEVLVKIPN----PGNIKRNADGHFWVSSSE-ELDG 252 (322)
T ss_dssp C---CEEEECTTSSEEEEEEGG------GTEEEEEESSSTTTTCEEEEEECSS----EEEEEECTTSCEEEEEEE-ETTS
T ss_pred C---cceEECCCCCEEEEEeCC------CCeEEEEECCCCcCCccceEEeCCC----CCCeEECCCCCEEEEecC-cccc
Confidence 2 233333 34 58887543 46899999875 23444333321 233344 5789987532 100
Q ss_pred ----CCCCeEEEEECCCCcEEEe
Q psy2979 356 ----GYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 356 ----~~~~~v~~yd~~~~~W~~~ 374 (400)
.....|.+||+....-..+
T Consensus 253 ~~~~~~~~~v~~~d~~G~~~~~~ 275 (322)
T 2fp8_A 253 NMHGRVDPKGIKFDEFGNILEVI 275 (322)
T ss_dssp STTSCEEEEEEEECTTSCEEEEE
T ss_pred cccCCCccEEEEECCCCCEEEEE
Confidence 0124689999976544444
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=2.1 Score=42.27 Aligned_cols=236 Identities=12% Similarity=0.034 Sum_probs=119.8
Q ss_pred cceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEEee-------------cCEEEEEECCCCCe--EEccCCCC-
Q psy2979 124 LRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCLDI-------------VDIVYVAASMHKIL--HSLGSLKF- 187 (400)
Q Consensus 124 ~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~~-------------~~~~~~yd~~~~~w--~~~~~~~~- 187 (400)
..++.++|..+++..... ++..+ ..+++..+++.||.... ...++.++..+..- ..+-..+.
T Consensus 154 ~~~i~v~dl~tg~~~~~~-~~~~k-~~~~~WsDg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~ 231 (693)
T 3iuj_A 154 WREIHLMDVESKQPLETP-LKDVK-FSGISWLGNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPA 231 (693)
T ss_dssp EEEEEEEETTTCSEEEEE-EEEEE-SCCCEEETTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGG
T ss_pred eEEEEEEECCCCCCCccc-cCCce-eccEEEeCCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCC
Confidence 357888999888865431 12111 12223236654555521 13477777655432 11111111
Q ss_pred -cceeeeEEEE-CCE-EEEEcccCCCCCCCeEEEEeCCCC--ceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCc
Q psy2979 188 -DFDVSGIAML-DGF-VYAVGGWDGSCRLDSVERYDPTKN--EWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGI 262 (400)
Q Consensus 188 -~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~ 262 (400)
+....+.... +++ |++...... ..+.++.+|..+. +|..+.+-...... .....++.+|+.... ++. .
T Consensus 232 ~~~~~~~~~~SpDg~~l~~~~~~~~--~~~~i~~~d~~~~~~~~~~l~~~~~~~~~-~~~~~g~~l~~~t~~---~~~-~ 304 (693)
T 3iuj_A 232 QHHRYVGATVTEDDRFLLISAANST--SGNRLYVKDLSQENAPLLTVQGDLDADVS-LVDNKGSTLYLLTNR---DAP-N 304 (693)
T ss_dssp GCCSEEEEEECTTSCEEEEEEESSS--SCCEEEEEETTSTTCCCEEEECSSSSCEE-EEEEETTEEEEEECT---TCT-T
T ss_pred CCeEEEEEEEcCCCCEEEEEEccCC--CCcEEEEEECCCCCCceEEEeCCCCceEE-EEeccCCEEEEEECC---CCC-C
Confidence 2222222222 444 444332221 1257889998766 67776542222221 234568899988654 322 3
Q ss_pred ceEEEEeCCCC---ceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEE
Q psy2979 263 EQVQRYNPKVN---QWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIA 339 (400)
Q Consensus 263 ~~v~~yd~~~~---~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~ 339 (400)
..++.+|..+. .|+.+.+-..... .....++.|++..-.++ ...++.+|...+....++ +|.........
T Consensus 305 ~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g----~~~l~~~d~~g~~~~~l~-~p~~~~~~~~~ 377 (693)
T 3iuj_A 305 RRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDA----TARVEQFDYEGKRVREVA-LPGLGSVSGFN 377 (693)
T ss_dssp CEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETT----EEEEEEECTTSCEEEEEC-CSSSSEEEECC
T ss_pred CEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECC----eeEEEEEECCCCeeEEee-cCCCceEEeee
Confidence 57899988763 4887654333222 44444666665543221 457899998876655553 22211100000
Q ss_pred E-E-CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCC
Q psy2979 340 V-I-DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLP 378 (400)
Q Consensus 340 ~-~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~ 378 (400)
. . ++.+++... +...-..++.||..+++++.+...+
T Consensus 378 ~~~d~~~l~~~~s---s~~tP~~l~~~d~~~g~~~~l~~~~ 415 (693)
T 3iuj_A 378 GKHDDPALYFGFE---NYAQPPTLYRFEPKSGAISLYRASA 415 (693)
T ss_dssp CCTTCSCEEEEEE---CSSSCCEEEEECTTTCCEEEEECCC
T ss_pred cCCCCCEEEEEec---CCCCCCEEEEEECCCCeEEEEEeCC
Confidence 0 1 234444321 1123468999999998888775433
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=95.52 E-value=1.2 Score=39.30 Aligned_cols=209 Identities=10% Similarity=0.038 Sum_probs=114.4
Q ss_pred ceEEEEEcCCCc--eEEccCCcccceeeeEEEE--CCeEEEEE-eecCEEEEEECCCCC---eEEccCCCCcceeeeEEE
Q psy2979 125 RSVEGFCVKTKV--WKTLSCLPFAISKHGLVVS--GRNTIYCL-DIVDIVYVAASMHKI---LHSLGSLKFDFDVSGIAM 196 (400)
Q Consensus 125 ~~~~~yd~~~~~--w~~~~~~~~~~~~~~~~~~--~~~~iyv~-~~~~~~~~yd~~~~~---w~~~~~~~~~r~~~~~~~ 196 (400)
.++...++.... ...+ ++......++... ++. ||.. ...+.++.+++.... +.....+..| .++++
T Consensus 13 ~~I~~i~l~~~~~~~~~~--~~~~~~~~~ld~d~~~~~-lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p---~glav 86 (318)
T 3sov_A 13 RDLRLVDATNGKENATIV--VGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSP---DGLAC 86 (318)
T ss_dssp EEEEEEETTCTTSCCEEE--EEEEEEEEEEEEEGGGTE-EEEEETTTTEEEEEETTSSSCCCEEEEECCSCC---CEEEE
T ss_pred CeEEEEECCCCceEEEEE--ecCCCccEEEEEEeCCCE-EEEEECCCCcEEEEEccCCCceEEEEcCCCCCc---cEEEE
Confidence 356667766543 1111 1111222334333 456 8888 445678889887652 2111122211 23333
Q ss_pred --ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEc--cCCCCcccccEEEE--eCCEEEEEc-CccccCCCCcceEEEEe
Q psy2979 197 --LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYI--EPMKLAVTSPAVVA--HEGMLYVTG-GAILEDGDGIEQVQRYN 269 (400)
Q Consensus 197 --~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~--~~l~~~~~~~~~~~--~~~~iyv~G-G~~~~~~~~~~~v~~yd 269 (400)
.++.||+.-.. ...++++++....-..+ ..+..++ +.++ .++.||+.. |. ...+++++
T Consensus 87 d~~~g~ly~~d~~-----~~~I~~~~~dG~~~~~l~~~~~~~P~---giavdp~~g~ly~td~~~-------~~~I~r~~ 151 (318)
T 3sov_A 87 DWLGEKLYWTDSE-----TNRIEVSNLDGSLRKVLFWQELDQPR---AIALDPSSGFMYWTDWGE-------VPKIERAG 151 (318)
T ss_dssp ETTTTEEEEEETT-----TTEEEEEETTSCSCEEEECSSCSSEE---EEEEEGGGTEEEEEECSS-------SCEEEEEE
T ss_pred EcCCCeEEEEECC-----CCEEEEEECCCCcEEEEEeCCCCCcc---EEEEeCCCCEEEEEecCC-------CCEEEEEE
Confidence 37899987432 35788999876543333 2232222 3333 368999985 32 34799999
Q ss_pred CCCCceeecc--CCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEE
Q psy2979 270 PKVNQWQDLA--PMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKI 345 (400)
Q Consensus 270 ~~~~~W~~~~--~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l 345 (400)
+....-+.+. .+..| .+++.- ++.||+.... ...++++|+....-+.+..- ....-.++++.++.+
T Consensus 152 ~dG~~~~~~~~~~l~~P---nglavd~~~~~lY~aD~~------~~~I~~~d~dG~~~~~~~~~-~~~~P~glav~~~~l 221 (318)
T 3sov_A 152 MDGSSRFIIINSEIYWP---NGLTLDYEEQKLYWADAK------LNFIHKSNLDGTNRQAVVKG-SLPHPFALTLFEDIL 221 (318)
T ss_dssp TTSCSCEEEECSSCSCE---EEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEECS-CCSCEEEEEEETTEE
T ss_pred cCCCCeEEEEECCCCCc---cEEEEeccCCEEEEEECC------CCEEEEEcCCCCceEEEecC-CCCCceEEEEeCCEE
Confidence 8754433331 22222 234443 7899998754 67899999875433333221 112234566778999
Q ss_pred EEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 346 YVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 346 yv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
|+.--. ...|.++|+.+++
T Consensus 222 ywtd~~------~~~V~~~~~~~G~ 240 (318)
T 3sov_A 222 YWTDWS------THSILACNKYTGE 240 (318)
T ss_dssp EEEETT------TTEEEEEETTTCC
T ss_pred EEEecC------CCeEEEEECCCCC
Confidence 998422 3578888886543
|
| >1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A | Back alignment and structure |
|---|
Probab=95.51 E-value=0.87 Score=37.70 Aligned_cols=145 Identities=12% Similarity=0.118 Sum_probs=80.0
Q ss_pred eEEEECCEEEEEcccCCCCCCCeEEEEeCCCCc-e--EEc----cCCCCcccccEEEE-eCCEEEEEcCccccCCCCcce
Q psy2979 193 GIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNE-W--SYI----EPMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQ 264 (400)
Q Consensus 193 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~-W--~~~----~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~ 264 (400)
+++..++++|++=| ..+|+++..... . ..+ +.+|.. -..+... .++++|++-|. .
T Consensus 35 Ai~~~~g~~~fFkg-------~~~Wr~~~~~~~~~~P~~I~~~wp~lp~~-IDAA~~~~~~~k~yfFkG~---------~ 97 (218)
T 1gen_A 35 GIAQIRGEIFFFKD-------RFIWRTVTPRDKPMGPLLVATFWPELPEK-IDAVYEAPQEEKAVFFAGN---------E 97 (218)
T ss_dssp EEEEETTEEEEEET-------TEEEEESSTTSCCEEEEEGGGTCTTSCSC-CSEEEEETTTTEEEEEETT---------E
T ss_pred EEEeCCCcEEEEEC-------CEEEEEeCCCCccCCCEEHHHhcCCCCCC-ccEEEEECCCCEEEEEeCC---------E
Confidence 45567899999977 446666554321 1 111 234432 2222222 36899999887 7
Q ss_pred EEEEeCCCCce---eeccC--CCCC-ceeeeEEE--ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEE-----cc-CC-
Q psy2979 265 VQRYNPKVNQW---QDLAP--MLIP-RSGAAICA--LDSCIYVLGGWHASTENTNRVECYHIAENTWEY-----KS-PM- 329 (400)
Q Consensus 265 v~~yd~~~~~W---~~~~~--~~~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~-----~~-~~- 329 (400)
.|+||..+..- ..+.. +|.. ..--++.. .++++|++-|. ..++||..+++-.. +. ..
T Consensus 98 yW~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG~--------~ywr~d~~~~~v~~gyPr~i~~~w~ 169 (218)
T 1gen_A 98 YWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGD--------KFWRYNEVKKKMDPGFPKLIADAWN 169 (218)
T ss_dssp EEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEETT--------EEEEEETTTTEECSSCCEEHHHHSS
T ss_pred EEEEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEECC--------EEEEEECccccccCCCCcchhhccC
Confidence 89998531100 01111 2211 12233333 36899999864 79999998764221 11 01
Q ss_pred cCccCcceEEEEC--CEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 330 KEKRYRPGIAVID--GKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 330 ~~~~~~~~~~~~~--~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
..+...-++...+ |++|++-|. ..|+||..+..
T Consensus 170 g~p~~idaAf~~~~~g~~YfFkg~--------~y~~~~~~~~~ 204 (218)
T 1gen_A 170 AIPDNLDAVVDLQGGGHSYFFKGA--------YYLKLENQSLK 204 (218)
T ss_dssp SCCSSCSEEEECTTTCEEEEEETT--------EEEEEETTEEE
T ss_pred CCCCCCCEEEEEcCCCcEEEEECC--------EEEEEECCcee
Confidence 1122223344444 899999875 67999987654
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=95.50 E-value=2.1 Score=42.09 Aligned_cols=104 Identities=12% Similarity=0.092 Sum_probs=63.4
Q ss_pred ceEEEEEcCCCc--eEEccCCcccc--------eeeeEEEECCeEEEEEeecCEEEEEECCCCC--eEEccCCCC--cce
Q psy2979 125 RSVEGFCVKTKV--WKTLSCLPFAI--------SKHGLVVSGRNTIYCLDIVDIVYVAASMHKI--LHSLGSLKF--DFD 190 (400)
Q Consensus 125 ~~~~~yd~~~~~--w~~~~~~~~~~--------~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~--w~~~~~~~~--~r~ 190 (400)
..+..+|..+++ |+.-...+... ...+.++.++. ||+......++.+|..+++ |+....-+. ...
T Consensus 76 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~ 154 (668)
T 1kv9_A 76 SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDK-VYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSI 154 (668)
T ss_dssp GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTE-EEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBC
T ss_pred CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCE-EEEEcCCCEEEEEECCCCCEeeeeccCCCCCccee
Confidence 468899998886 87643322110 11234556777 8887666789999998876 775432111 122
Q ss_pred eeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCc--eEEc
Q psy2979 191 VSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNE--WSYI 229 (400)
Q Consensus 191 ~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~ 229 (400)
..+-++.++.+|+..+.........+..||+.+++ |+.-
T Consensus 155 ~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 155 TGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp CSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred cCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 22344568888874332222234579999999875 8763
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=95.49 E-value=1.5 Score=40.15 Aligned_cols=199 Identities=12% Similarity=0.022 Sum_probs=109.8
Q ss_pred eecCEEEEEECCCCCeEEccCCCCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCC----ceEEc-c-CCCCc
Q psy2979 164 DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKN----EWSYI-E-PMKLA 235 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~----~W~~~-~-~l~~~ 235 (400)
...+.+...|+....+..+.+ ..+.-.+++.. ++.||+.--. ...+.++++... ....+ . .+..
T Consensus 89 ~~~~~I~~i~l~~~~~~~~~~--~~~~~~~l~~d~~~~~lywsD~~-----~~~I~~~~~~g~~~~~~~~~~~~~~~~~- 160 (400)
T 3p5b_L 89 TNRHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVISRDIQA- 160 (400)
T ss_dssp EETTEEEEECTTSCSCEEEEC--SCSCEEEEEEETTTTEEEEEETT-----TTEEEEEEC------CCCEEEECSSCSC-
T ss_pred eccceeEEEccCCcceeEecc--ccCcceEEeeeeccCceEEEecC-----CCeEEEEEcccCCCCCcceEEEeCCCCC-
Confidence 445678888888777765533 22233344443 6899987432 256888888752 22222 2 1221
Q ss_pred ccccEEEE--eCCEEEEEcCccccCCCCcceEEEEeCCCCceeecc--CCCCCceeeeEEEE--CCeEEEEcCcCCCCCC
Q psy2979 236 VTSPAVVA--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLA--PMLIPRSGAAICAL--DSCIYVLGGWHASTEN 309 (400)
Q Consensus 236 ~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~ 309 (400)
-.++++ .++.||+.-.. ...++++|+....-..+. .+..|+ ++++- ++.||+..-..
T Consensus 161 --p~glavD~~~~~lY~~d~~-------~~~I~~~~~~g~~~~~l~~~~~~~P~---~iavdp~~g~ly~td~~~----- 223 (400)
T 3p5b_L 161 --PDGLAVDWIHSNIYWTDSV-------LGTVSVADTKGVKRKTLFRENGSKPR---AIVVDPVHGFMYWTDWGT----- 223 (400)
T ss_dssp --EEEEEEETTTTEEEEEETT-------TTEEEEECTTTCSEEEEEECSSCCEE---EEEEETTTTEEEEEECSS-----
T ss_pred --cccEEEEecCCceEEEECC-------CCeEEEEeCCCCceEEEEeCCCCCcc---eEEEecccCeEEEEeCCC-----
Confidence 123344 47999998655 357999998876654443 333332 33443 68899876211
Q ss_pred CCeEEEEECCCCeEEEccCCcCccCcceEEEE---CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCC-CCCcee
Q psy2979 310 TNRVECYHIAENTWEYKSPMKEKRYRPGIAVI---DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPS-ARSWLG 385 (400)
Q Consensus 310 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~r~~~~ 385 (400)
...++++++....=..+.. .....+...++ +++||+.-.. .+.|+++|+....-+.+...+. -..-.+
T Consensus 224 ~~~I~~~~~dG~~~~~~~~--~~l~~P~glavd~~~~~lY~aD~~------~~~I~~~d~dG~~~~~~~~~~~~l~~P~g 295 (400)
T 3p5b_L 224 PAKIKKGGLNGVDIYSLVT--ENIQWPNGITLDLLSGRLYWVDSK------LHSISSIDVNGGNRKTILEDEKRLAHPFS 295 (400)
T ss_dssp SCCEEEEETTSCSCEEEEC--SSCSCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCCCEEEEECSSTTSSEEE
T ss_pred CCEEEEEeCCCCccEEEEE--CCCCceEEEEEEeCCCEEEEEECC------CCEEEEEeCCCCccEEEEeCCCCCCCCEE
Confidence 3579999987543332211 11123333333 6899998543 4689999987654444432111 122356
Q ss_pred eEEEcccccc
Q psy2979 386 CVPLQIHKSQ 395 (400)
Q Consensus 386 ~~~~~~~~~~ 395 (400)
+++.++..|+
T Consensus 296 l~v~~~~lyw 305 (400)
T 3p5b_L 296 LAVFEDKVFW 305 (400)
T ss_dssp EEEETTEEEE
T ss_pred EEEeCCEEEE
Confidence 6665555444
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=95.42 E-value=0.82 Score=43.97 Aligned_cols=221 Identities=11% Similarity=-0.060 Sum_probs=109.6
Q ss_pred ceEEEEEc--CCCceEEccCCcccceeeeEEEECCeEEEEE-eecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEE
Q psy2979 125 RSVEGFCV--KTKVWKTLSCLPFAISKHGLVVSGRNTIYCL-DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFV 201 (400)
Q Consensus 125 ~~~~~yd~--~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~i 201 (400)
..++..+. .... ..+...+..+ ......++..++++ ........||..+++...+...+. ... ...-+++.
T Consensus 90 ~~l~~~~~~~~g~~-~~l~~~~~~~--~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~-~~spDG~~ 163 (582)
T 3o4h_A 90 HALFKVNTSRPGEE-QRLEAVKPMR--ILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGF-VSDIRGDL 163 (582)
T ss_dssp EEEEEEETTSTTCC-EECTTSCSBE--EEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEE-EEEEETTE
T ss_pred eEEEEEeccCCCcc-ccccCCCCce--eeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceE-EECCCCCE
Confidence 35556665 3322 2444333222 22233344324444 444555688888877666554332 222 22235554
Q ss_pred EEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCC
Q psy2979 202 YAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPM 281 (400)
Q Consensus 202 yv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~ 281 (400)
.++++.+.. ....++.+|+.++++..+..-+... ..-+-.-+|+.++.+.. ++ ...++.+|..+.+...+...
T Consensus 164 la~~~~~~~-~~~~i~~~d~~~g~~~~l~~~~~~~-~~~~~SpDG~~l~~~~~---~~--~~~i~~~d~~~~~~~~~~~~ 236 (582)
T 3o4h_A 164 IAGLGFFGG-GRVSLFTSNLSSGGLRVFDSGEGSF-SSASISPGMKVTAGLET---AR--EARLVTVDPRDGSVEDLELP 236 (582)
T ss_dssp EEEEEEEET-TEEEEEEEETTTCCCEEECCSSCEE-EEEEECTTSCEEEEEEC---SS--CEEEEEECTTTCCEEECCCS
T ss_pred EEEEEEcCC-CCeEEEEEcCCCCCceEeecCCCcc-ccceECCCCCEEEEccC---CC--eeEEEEEcCCCCcEEEccCC
Confidence 444443311 1245899999999888775433222 11112235554444333 32 34799999998887733222
Q ss_pred CCCceeee-------EEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCC
Q psy2979 282 LIPRSGAA-------ICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGW 354 (400)
Q Consensus 282 ~~~r~~~~-------~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~ 354 (400)
........ ...-++++++.+.. ...+..|+. ++... .+.... ..+..-++++++.++. .
T Consensus 237 ~~~~~~~~~~~~~~~~~spdg~~~~~~~~------~g~~~l~~~--g~~~~---~~~~~v-~~~~~sdg~~l~~~s~-~- 302 (582)
T 3o4h_A 237 SKDFSSYRPTAITWLGYLPDGRLAVVARR------EGRSAVFID--GERVE---APQGNH-GRVVLWRGKLVTSHTS-L- 302 (582)
T ss_dssp CSHHHHHCCSEEEEEEECTTSCEEEEEEE------TTEEEEEET--TEEEC---CCSSEE-EEEEEETTEEEEEEEE-T-
T ss_pred CcChhhhhhccccceeEcCCCcEEEEEEc------CCcEEEEEE--CCeec---cCCCce-EEEEecCCEEEEEEcC-C-
Confidence 11111111 02336677777755 346777777 54433 122111 1222228888877654 2
Q ss_pred CCCCCeEEEEECCCCcEEEe
Q psy2979 355 DGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 355 ~~~~~~v~~yd~~~~~W~~~ 374 (400)
.....++.+|..+ +.+.+
T Consensus 303 -~~p~~l~~~d~~~-~~~~l 320 (582)
T 3o4h_A 303 -STPPRIVSLPSGE-PLLEG 320 (582)
T ss_dssp -TEEEEEEEETTCC-EEECC
T ss_pred -CCCCeEEEEcCCC-ceEEE
Confidence 2235678888765 44443
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=95.39 E-value=1.2 Score=40.40 Aligned_cols=145 Identities=16% Similarity=0.125 Sum_probs=76.3
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCcee
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQ 276 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~ 276 (400)
+++.++.|+.+ ..+..||..+++-...-.-.. ..-.+++. -++..++.|+. ++ .+..||..+.+..
T Consensus 134 dg~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~p~~~~l~s~s~---d~----~v~iwd~~~~~~~ 200 (393)
T 1erj_A 134 DGKFLATGAED-----RLIRIWDIENRKIVMILQGHE-QDIYSLDYFPSGDKLVSGSG---DR----TVRIWDLRTGQCS 200 (393)
T ss_dssp TSSEEEEEETT-----SCEEEEETTTTEEEEEECCCS-SCEEEEEECTTSSEEEEEET---TS----EEEEEETTTTEEE
T ss_pred CCCEEEEEcCC-----CeEEEEECCCCcEEEEEccCC-CCEEEEEEcCCCCEEEEecC---CC----cEEEEECCCCeeE
Confidence 56677777765 358889988875433211111 11112222 25666667766 43 7889998877644
Q ss_pred eccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEE-ccCCc---Ccc-CcceEEEE--CCEEEE
Q psy2979 277 DLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEY-KSPMK---EKR-YRPGIAVI--DGKIYV 347 (400)
Q Consensus 277 ~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~---~~~-~~~~~~~~--~~~lyv 347 (400)
..-..... ...++.. ++.+++.|+. ...+..||..++.-.. +.... ... .....+.+ +++.++
T Consensus 201 ~~~~~~~~--v~~~~~~~~~~~~l~~~s~------d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~ 272 (393)
T 1erj_A 201 LTLSIEDG--VTTVAVSPGDGKYIAAGSL------DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 272 (393)
T ss_dssp EEEECSSC--EEEEEECSTTCCEEEEEET------TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEE
T ss_pred EEEEcCCC--cEEEEEECCCCCEEEEEcC------CCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEE
Confidence 32222111 1222222 5678888876 4578899988776432 21111 111 11122333 577777
Q ss_pred EcCccCCCCCCCeEEEEECCCC
Q psy2979 348 LGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 348 ~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
.|+. + ..|.+||..+.
T Consensus 273 s~s~-d-----~~v~~wd~~~~ 288 (393)
T 1erj_A 273 SGSL-D-----RSVKLWNLQNA 288 (393)
T ss_dssp EEET-T-----SEEEEEEC---
T ss_pred EEeC-C-----CEEEEEECCCC
Confidence 7776 2 46788887653
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=95.39 E-value=1.5 Score=39.69 Aligned_cols=187 Identities=14% Similarity=0.047 Sum_probs=88.6
Q ss_pred EEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCCcc
Q psy2979 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDF 189 (400)
Q Consensus 111 ~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r 189 (400)
..++.|+.+ ..+.++|..+++-...-.- ....-.+++.. ++..++.......+..+|..+++....-....
T Consensus 136 ~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~-- 207 (393)
T 1erj_A 136 KFLATGAED-----RLIRIWDIENRKIVMILQG-HEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED-- 207 (393)
T ss_dssp SEEEEEETT-----SCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS--
T ss_pred CEEEEEcCC-----CeEEEEECCCCcEEEEEcc-CCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCC--
Confidence 345556554 4678888877654322111 11112233333 33313333555678888988765432221111
Q ss_pred eeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccC-CC---Ccccc--cEEEE-eCCEEEEEcCccccCCC
Q psy2979 190 DVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEP-MK---LAVTS--PAVVA-HEGMLYVTGGAILEDGD 260 (400)
Q Consensus 190 ~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-l~---~~~~~--~~~~~-~~~~iyv~GG~~~~~~~ 260 (400)
...+++.. ++.+++.|+.+ ..+..||..+++-...-. .. ..... .+++. -++..++.|+. ++
T Consensus 208 ~v~~~~~~~~~~~~l~~~s~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~---d~- 278 (393)
T 1erj_A 208 GVTTVAVSPGDGKYIAAGSLD-----RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL---DR- 278 (393)
T ss_dssp CEEEEEECSTTCCEEEEEETT-----SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET---TS-
T ss_pred CcEEEEEECCCCCEEEEEcCC-----CcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC---CC-
Confidence 11122222 56777778765 358889988775432211 11 11111 11222 26677777777 44
Q ss_pred CcceEEEEeCCCCceeeccCCC-----------CCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeE
Q psy2979 261 GIEQVQRYNPKVNQWQDLAPML-----------IPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTW 323 (400)
Q Consensus 261 ~~~~v~~yd~~~~~W~~~~~~~-----------~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 323 (400)
.+..||..+..-......+ ....-.+++.. ++..++.|+. ...+..||..+++-
T Consensus 279 ---~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~------D~~v~iwd~~~~~~ 344 (393)
T 1erj_A 279 ---SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK------DRGVLFWDKKSGNP 344 (393)
T ss_dssp ---EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET------TSEEEEEETTTCCE
T ss_pred ---EEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeC------CCeEEEEECCCCeE
Confidence 6888887543211110000 00001112222 5566666665 45789999887653
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=95.35 E-value=2.4 Score=41.81 Aligned_cols=237 Identities=10% Similarity=-0.030 Sum_probs=121.0
Q ss_pred cceEEEEEcCCCceEEccCCcc---c--ceeeeEEEE-CCeEEEEE--ee----cCEEEEEECCCCCeEEccCCCCccee
Q psy2979 124 LRSVEGFCVKTKVWKTLSCLPF---A--ISKHGLVVS-GRNTIYCL--DI----VDIVYVAASMHKILHSLGSLKFDFDV 191 (400)
Q Consensus 124 ~~~~~~yd~~~~~w~~~~~~~~---~--~~~~~~~~~-~~~~iyv~--~~----~~~~~~yd~~~~~w~~~~~~~~~r~~ 191 (400)
...++..+...++|..+.+.+. . ....+.+.. ++. ..++ .. ...++.+|..+++......++....
T Consensus 93 ~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~-~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~- 170 (695)
T 2bkl_A 93 KAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGK-KVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKY- 170 (695)
T ss_dssp SCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSS-EEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTT-
T ss_pred EEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCC-EEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccc-
Confidence 4566777776777877754331 1 111222333 555 3333 21 2579999999887641112221111
Q ss_pred eeEEEE-CCEEEEEcccCCC--------CCCCeEEEEeCCCCce--EEccCCCCc-ccccEE-EEeCCEEEEEcCccccC
Q psy2979 192 SGIAML-DGFVYAVGGWDGS--------CRLDSVERYDPTKNEW--SYIEPMKLA-VTSPAV-VAHEGMLYVTGGAILED 258 (400)
Q Consensus 192 ~~~~~~-~~~iyv~GG~~~~--------~~~~~v~~yd~~~~~W--~~~~~l~~~-~~~~~~-~~~~~~iyv~GG~~~~~ 258 (400)
...+.. +++.++++..+.. .....++.+++.+++- ..+...+.. ....+. ..-+|+..+++.. +
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~---~ 247 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYIL---R 247 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEE---E
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEe---C
Confidence 223333 5555555444322 2245688899887753 223222221 111222 2235554444333 2
Q ss_pred CCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCe---EEEccCCcCccCc
Q psy2979 259 GDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENT---WEYKSPMKEKRYR 335 (400)
Q Consensus 259 ~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~---W~~~~~~~~~~~~ 335 (400)
+.....++.+|..+..|..+..-..... ..+..++.+|+....+. . ...++.+|..+.. |..+-+.......
T Consensus 248 ~~~~~~l~~~~~~~~~~~~l~~~~~~~~--~~~~~~g~l~~~s~~~~--~-~~~l~~~d~~~~~~~~~~~l~~~~~~~~l 322 (695)
T 2bkl_A 248 GWSENDVYWKRPGEKDFRLLVKGVGAKY--EVHAWKDRFYVLTDEGA--P-RQRVFEVDPAKPARASWKEIVPEDSSASL 322 (695)
T ss_dssp TTTEEEEEEECTTCSSCEEEEECSSCCE--EEEEETTEEEEEECTTC--T-TCEEEEEBTTBCSGGGCEEEECCCSSCEE
T ss_pred CCCceEEEEEcCCCCceEEeecCCCceE--EEEecCCcEEEEECCCC--C-CCEEEEEeCCCCCccCCeEEecCCCCCeE
Confidence 1114578888877777887754322221 22225666666654322 2 4689999987664 7776543211112
Q ss_pred ceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEe
Q psy2979 336 PGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 336 ~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 374 (400)
..+...++++++.... + ....++.+|+..+.-+.+
T Consensus 323 ~~~~~~~~~lv~~~~~-d---g~~~l~~~~~~g~~~~~l 357 (695)
T 2bkl_A 323 LSVSIVGGHLSLEYLK-D---ATSEVRVATLKGKPVRTV 357 (695)
T ss_dssp EEEEEETTEEEEEEEE-T---TEEEEEEEETTCCEEEEC
T ss_pred EEEEEECCEEEEEEEE-C---CEEEEEEEeCCCCeeEEe
Confidence 2334448888887654 2 245788898765544443
|
| >1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.7 Score=42.95 Aligned_cols=173 Identities=12% Similarity=0.188 Sum_probs=98.5
Q ss_pred CCeEEEEEeecCEEEEEECCCCCeEEc--cCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCc--------
Q psy2979 156 GRNTIYCLDIVDIVYVAASMHKILHSL--GSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNE-------- 225 (400)
Q Consensus 156 ~~~~iyv~~~~~~~~~yd~~~~~w~~~--~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~-------- 225 (400)
++. +|++. .+..|.||..+++.... +.++ . --++...++++|++-| +..++||+.+++
T Consensus 158 ~~~-~yfFk-G~~yw~yd~~~~~~~~~~w~gi~--~-iDAA~~~~g~~YfFkG-------~~y~rfd~~~~~v~~gyPk~ 225 (460)
T 1qhu_A 158 DEG-ILFFQ-GNRKWFWDLTTGTKKERSWPAVG--N-CTSALRWLGRYYCFQG-------NQFLRFNPVSGEVPPGYPLD 225 (460)
T ss_dssp SSE-EEEEE-TTEEEEEETTTTEEEEECCTTSC--C-CSEEEEETTEEEEEET-------TEEEEECTTTCCCCTTCCEE
T ss_pred CCe-EEEEe-cccEEEEecccceeecccCCCCC--c-cchheeeCCceEEEEC-------CEEEEEcCccCcccCCCCcc
Confidence 455 77664 35789999887654321 2222 2 2344445789999988 567888876543
Q ss_pred ----eEEccCCCC-------------------cccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceee--c-
Q psy2979 226 ----WSYIEPMKL-------------------AVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQD--L- 278 (400)
Q Consensus 226 ----W~~~~~l~~-------------------~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~--~- 278 (400)
|..++.... ...--+++. .+|++|++-|. ..|++|...+.+.. +
T Consensus 226 is~~w~~c~~~g~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~tYFFKg~---------~yWR~~~~~~~~~p~~Is 296 (460)
T 1qhu_A 226 VRDYFLSCPGRGHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSGS---------HYWRLDTNRDGWHSWPIA 296 (460)
T ss_dssp HHHHTSCCTTCCSCC-------CCCTTTTTCTTCCCCEEEECTTCCEEEEETT---------EEEECTTGGGCCCCEEGG
T ss_pred hhhcccCCCCCCCccccccCCccccccccccCCCCcCEEEecCCCeEEEEeCC---------EEEEEecCCCCcCccchh
Confidence 222221100 011223333 57899999886 67888875543221 1
Q ss_pred ---cCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccC----------CcCc--cCcceEEEE--
Q psy2979 279 ---APMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSP----------MKEK--RYRPGIAVI-- 341 (400)
Q Consensus 279 ---~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~----------~~~~--~~~~~~~~~-- 341 (400)
+.+|. .--++...++++|++=|. .+++|+..++ .+..+. +|.. ...--++..
T Consensus 297 ~~WpglP~--~IDAAf~~~~~~yfFkG~--------~yw~f~~~~g-~~~~~GyPK~I~~~lGlp~~~~~~~IDAA~~~~ 365 (460)
T 1qhu_A 297 HQWPQGPS--TVDAAFSWEDKLYLIQDT--------KVYVFLTKGG-YTLVNGYPKRLEKELGSPPVISLEAVDAAFVCP 365 (460)
T ss_dssp GTCTTSCS--SCSEEEEETTEEEEEETT--------EEEEEECSBS-CEECTTCCEEHHHHHCCCSSCCCSCCCEEECCT
T ss_pred hhccCCCC--CCcEEEEECCeEEEEeCC--------EEEEEeCCCC-ceecCCCCeEHHHhccCCCccccCcccEEEEeC
Confidence 12232 233444558999999764 7999986532 222221 2211 112233332
Q ss_pred -CCEEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 342 -DGKIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 342 -~~~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
++++|++-|. ..|+||...
T Consensus 366 ~~~ktyfFkG~--------~ywryd~~~ 385 (460)
T 1qhu_A 366 GSSRLHIMAGR--------RLWWLDLKS 385 (460)
T ss_dssp TCCEEEEEETT--------EEEEEEGGG
T ss_pred CCCEEEEEECC--------EEEEEECCC
Confidence 5899999885 789999764
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.45 Score=47.14 Aligned_cols=118 Identities=16% Similarity=0.295 Sum_probs=74.0
Q ss_pred EEEeCCEEEEEcCccccCCCCcceEEEEeCCCCc--eeeccCCCCC--------ceeeeEEEECCeEEEEcCcCCCCCCC
Q psy2979 241 VVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ--WQDLAPMLIP--------RSGAAICALDSCIYVLGGWHASTENT 310 (400)
Q Consensus 241 ~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~ 310 (400)
-++.++.||+.... ..++++|..+.+ |+.-...+.. ....+.++.+++||+... .
T Consensus 66 P~v~~g~vyv~~~~--------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~-------d 130 (689)
T 1yiq_A 66 PIVVDGVMYTTGPF--------SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL-------D 130 (689)
T ss_dssp CEEETTEEEEECGG--------GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------T
T ss_pred CEEECCEEEEEcCC--------CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc-------C
Confidence 35679999997654 368999987655 8865433211 112234567888888653 4
Q ss_pred CeEEEEECCCCe--EEEccC-CcC--ccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCc--EEEe
Q psy2979 311 NRVECYHIAENT--WEYKSP-MKE--KRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS--WEIM 374 (400)
Q Consensus 311 ~~v~~yd~~~~~--W~~~~~-~~~--~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~ 374 (400)
..+..+|..+++ |+.-.. -+. .....+-++.++.+|+..+. ........++.||+++++ |+.-
T Consensus 131 g~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~-~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 131 GRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGG-AEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp SEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBC-TTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCC-CccCCCCEEEEEECCCCcEEEEec
Confidence 579999998775 887543 111 11222345569999885432 212235689999999876 8764
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=95.32 E-value=2.6 Score=41.96 Aligned_cols=234 Identities=12% Similarity=0.028 Sum_probs=117.9
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEEe---e-----------cCEEEEEECCCCCe--EEccCCC-C
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCLD---I-----------VDIVYVAASMHKIL--HSLGSLK-F 187 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~---~-----------~~~~~~yd~~~~~w--~~~~~~~-~ 187 (400)
..+.++|..+++..... ++... ....+...++.|+... . ...++.++..++.- ..+-..+ .
T Consensus 189 ~~i~v~dl~tg~~~~~~-~~~~~-~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~ 266 (741)
T 1yr2_A 189 RTVKFVGVADGKPLADE-LKWVK-FSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPEL 266 (741)
T ss_dssp EEEEEEETTTCCEEEEE-EEEEE-SCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTC
T ss_pred EEEEEEECCCCCCCCcc-CCCce-eccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCC
Confidence 46888898888775431 11110 1122333223244441 1 23577777765431 1111111 1
Q ss_pred cceeeeEEE-ECCE-EEEEcccCCCCCCCeEEEEeCCCC--c-eEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCc
Q psy2979 188 DFDVSGIAM-LDGF-VYAVGGWDGSCRLDSVERYDPTKN--E-WSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGI 262 (400)
Q Consensus 188 ~r~~~~~~~-~~~~-iyv~GG~~~~~~~~~v~~yd~~~~--~-W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~ 262 (400)
+....+... -+++ |++.. ..+......++.+|..+. + |..+.+-...... .+...++.||+.... ++. .
T Consensus 267 ~~~~~~~~~SpDG~~l~~~~-~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~-~~~~dg~~l~~~s~~---~~~-~ 340 (741)
T 1yr2_A 267 PKRGHGASVSSDGRWVVITS-SEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWD-FVDGVGDQLWFVSGD---GAP-L 340 (741)
T ss_dssp TTCEEEEEECTTSCEEEEEE-ECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEE-EEEEETTEEEEEECT---TCT-T
T ss_pred CeEEEEEEECCCCCEEEEEE-EccCCCcceEEEEECCCCCCcccEEecCCCCceEE-EEeccCCEEEEEECC---CCC-C
Confidence 222222222 2554 44443 322223567899998877 6 8777543322222 223457778777543 211 3
Q ss_pred ceEEEEeCCC--CceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEE
Q psy2979 263 EQVQRYNPKV--NQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAV 340 (400)
Q Consensus 263 ~~v~~yd~~~--~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~ 340 (400)
..++.+|..+ ..|+.+-+-.... ...+...++.+++....++ ...++.+++..+.-..+. +|.... .....
T Consensus 341 ~~l~~~d~~~~~~~~~~l~~~~~~~-l~~~~~~~~~lv~~~~~dg----~~~l~~~~~~g~~~~~l~-~~~~~~-v~~~~ 413 (741)
T 1yr2_A 341 KKIVRVDLSGSTPRFDTVVPESKDN-LESVGIAGNRLFASYIHDA----KSQVLAFDLDGKPAGAVS-LPGIGS-ASGLS 413 (741)
T ss_dssp CEEEEEECSSSSCEEEEEECCCSSE-EEEEEEEBTEEEEEEEETT----EEEEEEEETTSCEEEECB-CSSSCE-EEEEE
T ss_pred CEEEEEeCCCCccccEEEecCCCCe-EEEEEEECCEEEEEEEECC----EEEEEEEeCCCCceeecc-CCCCeE-EEEee
Confidence 5799999887 5788875433221 2223334788887765432 457889997655444443 221111 11111
Q ss_pred E--CC-EEEEEcCccCCCCCCCeEEEEECCCCcEEEecC
Q psy2979 341 I--DG-KIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSH 376 (400)
Q Consensus 341 ~--~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 376 (400)
. ++ .|++.... ...-..++.||..+++.+.+..
T Consensus 414 ~s~d~~~l~~~~ss---~~~P~~i~~~d~~tg~~~~l~~ 449 (741)
T 1yr2_A 414 GRPGDRHAYLSFSS---FTQPATVLALDPATAKTTPWEP 449 (741)
T ss_dssp CCBTCSCEEEEEEE---TTEEEEEEEEETTTTEEEECSC
T ss_pred cCCCCCEEEEEEcC---CCCCCEEEEEECCCCcEEEEec
Confidence 1 33 34443211 1224579999999988777654
|
| >3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.28 Score=40.90 Aligned_cols=99 Identities=9% Similarity=0.003 Sum_probs=59.7
Q ss_pred eCCEEEEEcCccccCCCCcceEEEEeCCC----Cceeec--------cCCCCC--c-eeeeEEE--ECCeEEEEcCcCCC
Q psy2979 244 HEGMLYVTGGAILEDGDGIEQVQRYNPKV----NQWQDL--------APMLIP--R-SGAAICA--LDSCIYVLGGWHAS 306 (400)
Q Consensus 244 ~~~~iyv~GG~~~~~~~~~~~v~~yd~~~----~~W~~~--------~~~~~~--r-~~~~~~~--~~~~iyv~GG~~~~ 306 (400)
.++++|++-|. .+|+||..+ +....- +.+|.. . .--++.. .++++|++-|.
T Consensus 69 ~~g~~~fFkg~---------~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~IDAA~~~~~~gk~yfFkG~--- 136 (225)
T 3oyo_A 69 EASEAYVFSGN---------HSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYLFKGN--- 136 (225)
T ss_dssp STTEEEEEETT---------EEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCCEEEECSSTTEEEEEETT---
T ss_pred CCCeEEEEcCC---------EEEEEecccccCCCceecCchhhhhcCCCCCCcccccccceEEEECCCCcEEEEeCC---
Confidence 58999999887 689997532 222111 122321 0 1122222 27899999874
Q ss_pred CCCCCeEEEEECCCCeEEEcc-----CCcC------ccCcceEEE--ECCEEEEEcCccCCCCCCCeEEEEECC
Q psy2979 307 TENTNRVECYHIAENTWEYKS-----PMKE------KRYRPGIAV--IDGKIYVLGGEEGWDGYHDSIECYDVD 367 (400)
Q Consensus 307 ~~~~~~v~~yd~~~~~W~~~~-----~~~~------~~~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd~~ 367 (400)
..|+||..+++...-| ..|. +..--++.. .++++|++-|. ..|+||..
T Consensus 137 -----~yw~~d~~~~~~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG~--------~ywr~d~~ 197 (225)
T 3oyo_A 137 -----KYVRIAYDSKQLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKGQ--------NYVRIDFT 197 (225)
T ss_dssp -----EEEEEETTTTEEEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEETT--------EEEEEECC
T ss_pred -----eEEEEECCCCeecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEECC--------EEEEEeCC
Confidence 7999998777655421 1221 122223333 27999999886 68999998
|
| >3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A | Back alignment and structure |
|---|
Probab=95.30 E-value=1.3 Score=39.91 Aligned_cols=147 Identities=7% Similarity=-0.011 Sum_probs=84.0
Q ss_pred eEEEECCEEEEEcccCCCCCCCeEEEEeCCCCce--EEc----cCCCCcccccEEEE--eCCEEEEEcCccccCCCCcce
Q psy2979 193 GIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEW--SYI----EPMKLAVTSPAVVA--HEGMLYVTGGAILEDGDGIEQ 264 (400)
Q Consensus 193 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W--~~~----~~l~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~ 264 (400)
+++.+++++|++=| ..+++++.....- ..+ +.||.. .. ++.. .++++|++-|. .
T Consensus 185 Av~~~~g~~~fFkg-------~~~Wr~~~~~~~~~p~~I~~~wpgLP~~-iD-Aa~~~~~~g~~~fFkg~---------~ 246 (365)
T 3ba0_A 185 AVTTVGNKIFFFKD-------RFFWLKVSERPKTSVNLISSLWPTLPSG-IE-AAYEIEARNQVFLFKDD---------K 246 (365)
T ss_dssp CEEEETTEEEEEET-------TEEEECCSSCCCCCEEEHHHHCSSCCSS-CC-EEEEEGGGTEEEEEETT---------E
T ss_pred eEEEcCCeEEEEeC-------CEEEEEcCCCccCCccchhhhccCCCCC-cc-EEEEecCCCEEEEEeCC---------E
Confidence 45567999999976 4466665443211 111 234522 22 2333 38999999886 6
Q ss_pred EEEEeCCCCc--e-eeccC--CCCC-ceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccC------Cc
Q psy2979 265 VQRYNPKVNQ--W-QDLAP--MLIP-RSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSP------MK 330 (400)
Q Consensus 265 v~~yd~~~~~--W-~~~~~--~~~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~------~~ 330 (400)
.|+|+..... + ..+.. +|.. ..--++... ++++|++-| +..|+||..+++-..--+ .|
T Consensus 247 yWr~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG--------~~yw~yd~~~~~v~~gyPk~I~~~f~ 318 (365)
T 3ba0_A 247 YWLISNLRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVD--------NQYWRYDERRQMMDPGYPKLITKNFQ 318 (365)
T ss_dssp EEECSTTSCTTTCSEETTTTTCCTTCCCCCEEEEETTTTEEEEEET--------TEEEEEETTTTEECSSCCCCHHHHST
T ss_pred EEEEcCCcccCCCCceeeeccCCCCCCCcCEEEEeCCCCEEEEEEC--------CEEEEEeCCcceecCCCCcchhhcCC
Confidence 8998764321 1 12222 2321 122233333 589999986 379999987764321001 11
Q ss_pred -CccCcceEEEE-CCEEEEEcCccCCCCCCCeEEEEECCCCcEEE
Q psy2979 331 -EKRYRPGIAVI-DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEI 373 (400)
Q Consensus 331 -~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~ 373 (400)
.+...-++... ++++|++-|. ..|+||..+.+-..
T Consensus 319 g~p~~iDaA~~~~~g~~YfFkg~--------~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 319 GIGPKIDAVFYSKNKYYYFFQGS--------NQFEYDFLLQRITK 355 (365)
T ss_dssp TCCSSCSEEEEETTTEEEEEETT--------EEEEEETTTTEEEE
T ss_pred CCCCccceeeEecCCcEEEEeCC--------EEEEEECCccEEec
Confidence 12223334445 8999999875 68999998876544
|
| >3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.5 Score=38.42 Aligned_cols=144 Identities=11% Similarity=0.052 Sum_probs=80.2
Q ss_pred eEEEECCEEEEEcccCCCCCCCeEEEEeCCC---CceEEc----cCCCCcccccEEEEeCCEEEEEcCccccCCCCcceE
Q psy2979 193 GIAMLDGFVYAVGGWDGSCRLDSVERYDPTK---NEWSYI----EPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQV 265 (400)
Q Consensus 193 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~---~~W~~~----~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v 265 (400)
+++.+++.+|++-| +.+++++... +-=..+ +.||.. -..+....++++|++-|. ..
T Consensus 10 A~~~~~g~~~fFkg-------~~~w~~~~~~~~~gyP~~I~~~w~glP~~-iDAa~~~~~g~~yfFkg~---------~y 72 (196)
T 3c7x_A 10 TVAMLRGEMFVFKE-------RWFWRVRNNQVMDGYPMPIGQFWRGLPAS-INTAYERKDGKFVFFKGD---------KH 72 (196)
T ss_dssp EEEEETTEEEEEET-------TEEEEEETTEECTTCSEEHHHHSTTCCSS-CCEEEECTTSCEEEEETT---------EE
T ss_pred EEEEcCCEEEEEEC-------CEEEEEECCccCCCCceEhhHhccCCCCC-ccEEEEeCCCcEEEecCC---------EE
Confidence 34467899999987 5577775431 100112 235542 222222257899999886 68
Q ss_pred EEEeCCCCce---eecc----CCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEE-----ccCCc-
Q psy2979 266 QRYNPKVNQW---QDLA----PMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEY-----KSPMK- 330 (400)
Q Consensus 266 ~~yd~~~~~W---~~~~----~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~-----~~~~~- 330 (400)
|+|+..+... ..+. .+|...- -++... ++++|++-|. ..++||..+++-.. +...+
T Consensus 73 w~~~~~~~~~gyPk~I~~~~~glP~~~I-DAA~~~~~~g~~yfFkG~--------~yw~yd~~~~~v~~gyPk~i~~~~g 143 (196)
T 3c7x_A 73 WVFDEASLEPGYPKHIKELGRGLPTDKI-DAALFWMPNGKTYFFRGN--------KYYRFNEELRAVDSEYPKNIKVWEG 143 (196)
T ss_dssp EEEETTEECTTCSEEGGGTCBSCCSSCC-SEEEEETTTTEEEEEETT--------EEEEEETTTTEECTTCSEEGGGSBT
T ss_pred EEEeCCcccCCCCeEhhhcCCCCCCCcc-cEEEEEccCCEEEEEECC--------EEEEEeCCcccccCCCCccHHHCCC
Confidence 9998643211 1121 1332222 223322 6899999864 78999988764221 11111
Q ss_pred CccCcceEEEE-CC-EEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 331 EKRYRPGIAVI-DG-KIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 331 ~~~~~~~~~~~-~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
.+...-++... ++ ++|++-|. ..|+||..+.+
T Consensus 144 ip~~idaAf~~~~~~~~YfFkg~--------~y~r~d~~~~~ 177 (196)
T 3c7x_A 144 IPESPRGSFMGSDEVFTYFYKGN--------KYWKFNNQKLK 177 (196)
T ss_dssp CCSSCSEEEECTTSSEEEEEETT--------EEEEEETTTTE
T ss_pred cCCCcceeEEecCCCEEEEEECC--------EEEEEECCcce
Confidence 11222233333 44 99999885 68999988764
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=2.2 Score=41.02 Aligned_cols=104 Identities=10% Similarity=0.016 Sum_probs=62.0
Q ss_pred ceEEEEEc-CCCc--eEEccCCccc--------ceeeeEEEECCeEEEEEeecCEEEEEECCCCC--eEEccCC-CCc-c
Q psy2979 125 RSVEGFCV-KTKV--WKTLSCLPFA--------ISKHGLVVSGRNTIYCLDIVDIVYVAASMHKI--LHSLGSL-KFD-F 189 (400)
Q Consensus 125 ~~~~~yd~-~~~~--w~~~~~~~~~--------~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~--w~~~~~~-~~~-r 189 (400)
..+..+|+ .+++ |+.-...+.. ....+.++.++. +|+......++.+|..+++ |+.-..- +.. .
T Consensus 73 ~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~ 151 (571)
T 2ad6_A 73 NNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQ-IVKKQANGHLLALDAKTGKINWEVEVCDPKVGST 151 (571)
T ss_dssp TCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTE-EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCB
T ss_pred CEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCE-EEEEeCCCEEEEEECCCCCEEEEecCCCCCccce
Confidence 46889999 7875 8754332211 011235566777 8888666789999998875 7643221 110 1
Q ss_pred eeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCc--eEEc
Q psy2979 190 DVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNE--WSYI 229 (400)
Q Consensus 190 ~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~ 229 (400)
...+-++.++.+|+..+..+......+..||+.+++ |+.-
T Consensus 152 ~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 152 LTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp CCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred eccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence 122334468888876432111123578999998774 7654
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=1.2 Score=47.34 Aligned_cols=138 Identities=10% Similarity=-0.005 Sum_probs=71.5
Q ss_pred eecCEEEEEECCCCCeEEccCCCCc-ceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEE
Q psy2979 164 DIVDIVYVAASMHKILHSLGSLKFD-FDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAV 241 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~~~~-r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~ 241 (400)
.....+..||..+++... .+... ..-.+++.. +++..+.|+.+ ..+..||..+++....- .........
T Consensus 634 ~~d~~i~vw~~~~~~~~~--~~~~h~~~v~~~~~s~~~~~l~s~~~d-----~~v~vwd~~~~~~~~~~--~~~~~~v~~ 704 (1249)
T 3sfz_A 634 GADKTLQVFKAETGEKLL--DIKAHEDEVLCCAFSSDDSYIATCSAD-----KKVKIWDSATGKLVHTY--DEHSEQVNC 704 (1249)
T ss_dssp ETTSCEEEEETTTCCEEE--EECCCSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEEE--ECCSSCEEE
T ss_pred eCCCeEEEEECCCCCEEE--EeccCCCCEEEEEEecCCCEEEEEeCC-----CeEEEEECCCCceEEEE--cCCCCcEEE
Confidence 445678888987765322 11111 111122222 56666777654 46889999887643321 111111122
Q ss_pred EEe----CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEE
Q psy2979 242 VAH----EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYH 317 (400)
Q Consensus 242 ~~~----~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd 317 (400)
+.+ ++.+++.|+. ++ .+..||..+..-...-.-....-......-++..++.|+. ...+..||
T Consensus 705 ~~~~~~~~~~~l~sg~~---d~----~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~------dg~v~vwd 771 (1249)
T 3sfz_A 705 CHFTNKSNHLLLATGSN---DF----FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA------DGTLRLWD 771 (1249)
T ss_dssp EEECSSSSCCEEEEEET---TS----CEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES------SSEEEEEE
T ss_pred EEEecCCCceEEEEEeC---CC----eEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC------CCeEEEEe
Confidence 222 3456666666 43 6889998776543221111111111122226677777765 45788899
Q ss_pred CCCCeE
Q psy2979 318 IAENTW 323 (400)
Q Consensus 318 ~~~~~W 323 (400)
..+..-
T Consensus 772 ~~~~~~ 777 (1249)
T 3sfz_A 772 VRSANE 777 (1249)
T ss_dssp GGGTEE
T ss_pred CCCCcc
Confidence 877753
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=95.24 E-value=1.6 Score=39.10 Aligned_cols=236 Identities=9% Similarity=-0.053 Sum_probs=113.6
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeE-E-EECCeEEEEE-----------------------eecCEEEEEECCCCCe
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGL-V-VSGRNTIYCL-----------------------DIVDIVYVAASMHKIL 179 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~-~-~~~~~~iyv~-----------------------~~~~~~~~yd~~~~~w 179 (400)
..+..+|+.+++-..+...+........ + .-++. .++. .....++.+|+.+++-
T Consensus 102 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 102 RNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCT-KLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSS-EEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CeEEEEECCCCcceeeeechhhcccccceeECCCCC-eeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 4688888888776655444433222111 1 22344 3322 0225688899988876
Q ss_pred EEccCCCCcceeeeEEEE-CCEEEEEcccC-CCCCCCeEEEEeCCCCceEEccCCCCcc-cccEEEEeCCE-EEEEcCcc
Q psy2979 180 HSLGSLKFDFDVSGIAML-DGFVYAVGGWD-GSCRLDSVERYDPTKNEWSYIEPMKLAV-TSPAVVAHEGM-LYVTGGAI 255 (400)
Q Consensus 180 ~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~-~~~~~~~v~~yd~~~~~W~~~~~l~~~~-~~~~~~~~~~~-iyv~GG~~ 255 (400)
..+..-+. ........- +++.+++.... .......++.+|+.+.....+..-.... ..+..-.-+|+ |+..+..
T Consensus 181 ~~l~~~~~-~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~- 258 (388)
T 3pe7_A 181 TVILQENQ-WLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYL- 258 (388)
T ss_dssp EEEEEESS-CEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEE-
T ss_pred EEeecCCc-cccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecC-
Confidence 55543221 112222222 34433332222 1123457999999887776665433211 11112222554 5333322
Q ss_pred ccCCCCcceEEEEeCCCCceeeccCCCCCcee-----eeEEEECCe-EEEEc----CcCCCCCCCCeEEEEECCCCeEEE
Q psy2979 256 LEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSG-----AAICALDSC-IYVLG----GWHASTENTNRVECYHIAENTWEY 325 (400)
Q Consensus 256 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~-----~~~~~~~~~-iyv~G----G~~~~~~~~~~v~~yd~~~~~W~~ 325 (400)
++.....++.+|+.+.+-+.+..++..... .....-+++ |++.. |... .. ...++.+|+.+++-..
T Consensus 259 --~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~-~~-~~~i~~~d~~~~~~~~ 334 (388)
T 3pe7_A 259 --KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKI-EN-DPFLYVFNMKNGTQHR 334 (388)
T ss_dssp --TTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-------------CC-CCEEEEEETTTTEEEE
T ss_pred --CCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeecccccc-CC-CCEEEEEeccCCceEE
Confidence 221123599999998887666544331000 001222332 33221 0000 11 4689999999988776
Q ss_pred ccCCcCc----------cCcceEEEECC-EEEEEcCccCCCCCCCeEEEEECCCCcE
Q psy2979 326 KSPMKEK----------RYRPGIAVIDG-KIYVLGGEEGWDGYHDSIECYDVDNDSW 371 (400)
Q Consensus 326 ~~~~~~~----------~~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~W 371 (400)
+...+.. ........-+| .|++.... . ....+|.+|.....|
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~-~---g~~~l~~~~l~~~~~ 387 (388)
T 3pe7_A 335 VARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDV-H---GKPALYLATLPESVW 387 (388)
T ss_dssp EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT-T---SSCEEEEEECCGGGG
T ss_pred eccccCcccccccccccCCCCccCCCCCCEEEEEecC-C---CceeEEEEECChhcc
Confidence 6543321 01111222255 45554433 2 245799999887766
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=1.9 Score=41.54 Aligned_cols=186 Identities=9% Similarity=0.067 Sum_probs=97.8
Q ss_pred EEEE-eecCEEEEEECCCCCeEEccCCCCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcc
Q psy2979 160 IYCL-DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAV 236 (400)
Q Consensus 160 iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~ 236 (400)
+|+. ...+.+..+|+.+++-.. .++....-+.++.. +..+|+.+. ...+..||+...+-+.+..++...
T Consensus 169 ~~V~~~~~~~V~viD~~t~~v~~--~i~~g~~p~~v~~SpDGr~lyv~~~------dg~V~viD~~~~t~~~v~~i~~G~ 240 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTYEIKT--VLDTGYAVHISRLSASGRYLFVIGR------DGKVNMIDLWMKEPTTVAEIKIGS 240 (567)
T ss_dssp EEEEETTTTEEEEEETTTCCEEE--EEECSSCEEEEEECTTSCEEEEEET------TSEEEEEETTSSSCCEEEEEECCS
T ss_pred EEEEeCCCCeEEEEECCCCeEEE--EEeCCCCccceEECCCCCEEEEEcC------CCeEEEEECCCCCCcEeEEEecCC
Confidence 5555 445788999998876442 22222222333332 457787542 246999998522223333333322
Q ss_pred cccEEEEe-----CC-EEEEEcCccccCCCCcceEEEEeCCCCceeec-c--CC--------CCCceeeeEEEECCeEEE
Q psy2979 237 TSPAVVAH-----EG-MLYVTGGAILEDGDGIEQVQRYNPKVNQWQDL-A--PM--------LIPRSGAAICALDSCIYV 299 (400)
Q Consensus 237 ~~~~~~~~-----~~-~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~-~--~~--------~~~r~~~~~~~~~~~iyv 299 (400)
.-..++.. +| .+|+..-. .+.+..+|..+.+=... + .+ |.+|.....+..++..++
T Consensus 241 ~P~~ia~s~~~~pDGk~l~v~n~~-------~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~v 313 (567)
T 1qks_A 241 EARSIETSKMEGWEDKYAIAGAYW-------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI 313 (567)
T ss_dssp EEEEEEECCSTTCTTTEEEEEEEE-------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEE
T ss_pred CCceeEEccccCCCCCEEEEEEcc-------CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEE
Confidence 22233333 44 56666443 34788889766543221 1 11 122333333333434444
Q ss_pred EcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE-CCE-EEEEcCccCCCCCCCeEEEEECCCCcE
Q psy2979 300 LGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI-DGK-IYVLGGEEGWDGYHDSIECYDVDNDSW 371 (400)
Q Consensus 300 ~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~-lyv~GG~~~~~~~~~~v~~yd~~~~~W 371 (400)
+--. . ...++..|..+.....+...+..+..|....- +++ +|+.... .+.|.++|..+++-
T Consensus 314 v~~~----~-~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~------sn~V~ViD~~t~kl 376 (567)
T 1qks_A 314 VNVK----E-TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANA------RNKLVVIDTKEGKL 376 (567)
T ss_dssp EEET----T-TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGG------GTEEEEEETTTTEE
T ss_pred EEec----C-CCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCC------CCeEEEEECCCCcE
Confidence 3311 1 56888898887665555555555555554333 444 4554332 46899999998863
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.066 Score=49.67 Aligned_cols=145 Identities=9% Similarity=0.008 Sum_probs=79.0
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCC-CcccccEEEE--eCCEEEEEcCccccCCCCcceEEEEeCCCCc
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMK-LAVTSPAVVA--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ 274 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~-~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 274 (400)
++.+.+.|+.++ .+..||..+++-...-.+. ....-.+++. .++.+++.|+. |+ .+..||..++.
T Consensus 131 ~~~~lasGs~dg-----~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~---D~----~v~iwd~~~~~ 198 (435)
T 4e54_B 131 HPSTVAVGSKGG-----DIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSM---EG----TTRLQDFKGNI 198 (435)
T ss_dssp CTTCEEEEETTS-----CEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECS---SS----CEEEEETTSCE
T ss_pred CCCEEEEEeCCC-----EEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeC---CC----EEEEeeccCCc
Confidence 345677777664 4888888776543332222 1112223333 35677778887 65 68889988776
Q ss_pred eeeccCCCCCc-eeeeEE-EECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE---CCEEEEEc
Q psy2979 275 WQDLAPMLIPR-SGAAIC-ALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI---DGKIYVLG 349 (400)
Q Consensus 275 W~~~~~~~~~r-~~~~~~-~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~---~~~lyv~G 349 (400)
...+....... ...++. .-++.+++.|+. ...+..||...+. +..+......-..+.+ ++.+++.|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~------dg~i~~wd~~~~~---~~~~~~h~~~v~~v~~~p~~~~~~~s~ 269 (435)
T 4e54_B 199 LRVFASSDTINIWFCSLDVSASSRMVVTGDN------VGNVILLNMDGKE---LWNLRMHKKKVTHVALNPCCDWFLATA 269 (435)
T ss_dssp EEEEECCSSCSCCCCCEEEETTTTEEEEECS------SSBEEEEESSSCB---CCCSBCCSSCEEEEEECTTCSSEEEEE
T ss_pred eeEEeccCCCCccEEEEEECCCCCEEEEEeC------CCcEeeeccCcce---eEEEecccceEEeeeecCCCceEEEEe
Confidence 55443222111 112222 236778888876 4578889986543 2222221122223333 23466677
Q ss_pred CccCCCCCCCeEEEEECCCC
Q psy2979 350 GEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 350 G~~~~~~~~~~v~~yd~~~~ 369 (400)
+. + ..|.+||..+.
T Consensus 270 s~-d-----~~v~iwd~~~~ 283 (435)
T 4e54_B 270 SV-D-----QTVKIWDLRQV 283 (435)
T ss_dssp ET-T-----SBCCEEETTTC
T ss_pred cC-c-----ceeeEEecccc
Confidence 65 2 35677887664
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.08 E-value=2.1 Score=39.53 Aligned_cols=141 Identities=13% Similarity=0.049 Sum_probs=70.4
Q ss_pred eecCEEEEEECC--CCCeEEc-cCCCCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEE--ccCCCCccc
Q psy2979 164 DIVDIVYVAASM--HKILHSL-GSLKFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSY--IEPMKLAVT 237 (400)
Q Consensus 164 ~~~~~~~~yd~~--~~~w~~~-~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~--~~~l~~~~~ 237 (400)
.....+..||.. +++.... .....+..-.+++.. ++..++.|+.+ ..+..++..+.+... ...+.....
T Consensus 122 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~-----g~v~~~~~~~~~~~~~~~~~~~~h~~ 196 (450)
T 2vdu_B 122 DSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKF-----GDVYSIDINSIPEEKFTQEPILGHVS 196 (450)
T ss_dssp GGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTSCCCSSCCCCCSEECSS
T ss_pred CCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCC-----CcEEEEecCCcccccccceeeecccC
Confidence 344677888876 4432221 100111111122222 45556666543 357888876654321 111111111
Q ss_pred c-cEE-EEeC---CEEEEEcCccccCCCCcceEEEEeCCCCceeec--cCCCCCceeeeEEEECCeEEEEcCcCCCCCCC
Q psy2979 238 S-PAV-VAHE---GMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDL--APMLIPRSGAAICALDSCIYVLGGWHASTENT 310 (400)
Q Consensus 238 ~-~~~-~~~~---~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~--~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 310 (400)
. .++ ..-+ +++++.|+. ++ .+..||..+.+.... ..-..+ -...... ++.+++.|+. .
T Consensus 197 ~v~~~~~sp~~~~~~~l~s~~~---d~----~i~vwd~~~~~~~~~~~~~h~~~-v~~~~~s-d~~~l~s~~~------d 261 (450)
T 2vdu_B 197 MLTDVHLIKDSDGHQFIITSDR---DE----HIKISHYPQCFIVDKWLFGHKHF-VSSICCG-KDYLLLSAGG------D 261 (450)
T ss_dssp CEEEEEEEECTTSCEEEEEEET---TS----CEEEEEESCTTCEEEECCCCSSC-EEEEEEC-STTEEEEEES------S
T ss_pred ceEEEEEcCCCCCCcEEEEEcC---CC----cEEEEECCCCceeeeeecCCCCc-eEEEEEC-CCCEEEEEeC------C
Confidence 1 112 2235 778888877 54 688888876653321 111111 1122223 7777778775 5
Q ss_pred CeEEEEECCCCeEE
Q psy2979 311 NRVECYHIAENTWE 324 (400)
Q Consensus 311 ~~v~~yd~~~~~W~ 324 (400)
..+..||..+++..
T Consensus 262 ~~v~vwd~~~~~~~ 275 (450)
T 2vdu_B 262 DKIFAWDWKTGKNL 275 (450)
T ss_dssp SEEEEEETTTCCEE
T ss_pred CeEEEEECCCCcEe
Confidence 68999999887643
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=95.06 E-value=1.5 Score=37.99 Aligned_cols=210 Identities=13% Similarity=0.126 Sum_probs=105.5
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEee-cCEEEEEECCCCCeEEccCCCCc-c-e-eeeEEE-EC
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDI-VDIVYVAASMHKILHSLGSLKFD-F-D-VSGIAM-LD 198 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~-~~~~~~yd~~~~~w~~~~~~~~~-r-~-~~~~~~-~~ 198 (400)
..+..|++ +++...+.. +.. ...+++.- ++. +|+... ...+..||+. ++...+...... + . -..++. -+
T Consensus 67 ~~i~~~~~-~g~~~~~~~-~~~-~~~gl~~d~dG~-l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~d 141 (305)
T 3dr2_A 67 RRVLGWRE-DGTVDVLLD-ATA-FTNGNAVDAQQR-LVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARD 141 (305)
T ss_dssp TEEEEEET-TSCEEEEEE-SCS-CEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTT
T ss_pred CEEEEEeC-CCCEEEEeC-CCC-ccceeeECCCCC-EEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCC
Confidence 45777887 444443322 111 12334433 556 887743 3689999986 666655432111 1 1 112222 26
Q ss_pred CEEEEE----cccCC--------CCCCCeEEEEeCCCCceEEccCCCCcccccEEEE-eCC-EEEEEcCccccCCCC-cc
Q psy2979 199 GFVYAV----GGWDG--------SCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA-HEG-MLYVTGGAILEDGDG-IE 263 (400)
Q Consensus 199 ~~iyv~----GG~~~--------~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~~~-~iyv~GG~~~~~~~~-~~ 263 (400)
+.+|+. |-... ......+++||+.+++++.+. .... -.+.+. -++ .+|+.... .... ..
T Consensus 142 G~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~-p~gl~~spdg~~lyv~~~~---~~~~~~~ 215 (305)
T 3dr2_A 142 GAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDH-PNGLAFSPDEQTLYVSQTP---EQGHGSV 215 (305)
T ss_dssp SCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESS-EEEEEECTTSSEEEEEECC---C---CCC
T ss_pred CCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCC-CcceEEcCCCCEEEEEecC---CcCCCCC
Confidence 788885 32110 112356999999888887664 1111 112333 244 58887543 1100 24
Q ss_pred eEEEEeCCCCceeec---cCCCCCceeeeEEE-ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEE
Q psy2979 264 QVQRYNPKVNQWQDL---APMLIPRSGAAICA-LDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIA 339 (400)
Q Consensus 264 ~v~~yd~~~~~W~~~---~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~ 339 (400)
.+++||...+..... ...+... -.+++. -++.||+..+ ..+.+||+.......+. .|. ....+
T Consensus 216 ~i~~~~~~~~~l~~~~~~~~~~~~~-pdgi~~d~~G~lwv~~~--------~gv~~~~~~g~~~~~~~-~~~---~~~~~ 282 (305)
T 3dr2_A 216 EITAFAWRDGALHDRRHFASVPDGL-PDGFCVDRGGWLWSSSG--------TGVCVFDSDGQLLGHIP-TPG---TASNC 282 (305)
T ss_dssp EEEEEEEETTEEEEEEEEECCSSSC-CCSEEECTTSCEEECCS--------SEEEEECTTSCEEEEEE-CSS---CCCEE
T ss_pred EEEEEEecCCCccCCeEEEECCCCC-CCeEEECCCCCEEEecC--------CcEEEECCCCCEEEEEE-CCC---ceeEE
Confidence 789998765542211 1111111 112222 3677887652 35999999766555443 222 23333
Q ss_pred EE---CCEEEEEcCccCCCCCCCeEEEEEC
Q psy2979 340 VI---DGKIYVLGGEEGWDGYHDSIECYDV 366 (400)
Q Consensus 340 ~~---~~~lyv~GG~~~~~~~~~~v~~yd~ 366 (400)
++ ++.||+... ..++++++
T Consensus 283 ~f~~d~~~L~it~~--------~~l~~~~~ 304 (305)
T 3dr2_A 283 TFDQAQQRLFITGG--------PCLWMLPL 304 (305)
T ss_dssp EECTTSCEEEEEET--------TEEEEEEC
T ss_pred EEeCCCCEEEEEcC--------CeEEEEEC
Confidence 44 346777543 25666654
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=95.02 E-value=1.7 Score=38.24 Aligned_cols=135 Identities=7% Similarity=-0.023 Sum_probs=67.0
Q ss_pred eEEEEEcCCCce-EEccCCc---ccceeeeEEEE-C----CeEEEEE-eecCEEEEEECCCCCeEEccCCCCcceeeeEE
Q psy2979 126 SVEGFCVKTKVW-KTLSCLP---FAISKHGLVVS-G----RNTIYCL-DIVDIVYVAASMHKILHSLGSLKFDFDVSGIA 195 (400)
Q Consensus 126 ~~~~yd~~~~~w-~~~~~~~---~~~~~~~~~~~-~----~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~ 195 (400)
.+..||..+++. ..+.... ....-.+++.. + +. +++. .....+..||..+++-...-. .....-.++.
T Consensus 45 ~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~i~~~~ 122 (366)
T 3k26_A 45 RVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP-LLAVAGSRGIIRIINPITMQCIKHYV-GHGNAINELK 122 (366)
T ss_dssp EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE-EEEEEETTCEEEEECTTTCCEEEEEE-SCCSCEEEEE
T ss_pred EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC-EEEEecCCCEEEEEEchhceEeeeec-CCCCcEEEEE
Confidence 578888776543 2222111 11222233333 2 23 3333 555678889987665322111 0111111222
Q ss_pred EE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEcc-CCCCcccccEEEE--eCCEEEEEcCccccCCCCcceEEEEeC
Q psy2979 196 ML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIE-PMKLAVTSPAVVA--HEGMLYVTGGAILEDGDGIEQVQRYNP 270 (400)
Q Consensus 196 ~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~-~l~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~ 270 (400)
.. ++.+++.|+.+ ..+..||..+++-...- .+........... -++..++.|+. ++ .+..||.
T Consensus 123 ~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg----~i~i~d~ 190 (366)
T 3k26_A 123 FHPRDPNLLLSVSKD-----HALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM---DH----SLKLWRI 190 (366)
T ss_dssp ECSSCTTEEEEEETT-----SCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEET---TS----CEEEEES
T ss_pred ECCCCCCEEEEEeCC-----CeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecC---CC----CEEEEEC
Confidence 22 55677777765 35889999887644332 1121111122222 25667777776 44 6888988
Q ss_pred CCCc
Q psy2979 271 KVNQ 274 (400)
Q Consensus 271 ~~~~ 274 (400)
.+.+
T Consensus 191 ~~~~ 194 (366)
T 3k26_A 191 NSKR 194 (366)
T ss_dssp CSHH
T ss_pred CCCc
Confidence 7653
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=94.95 E-value=1.5 Score=37.20 Aligned_cols=177 Identities=15% Similarity=0.076 Sum_probs=98.8
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEE--CCeEEEEE-eecCEEEEEECCCCCeEEccCCCCcceeeeEEEE--CC
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVS--GRNTIYCL-DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML--DG 199 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~--~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~--~~ 199 (400)
..+..+++....-..+.... ....+++++. ++. +|+. ...+.+..+++....-..+.+....+ -..++.- ++
T Consensus 58 ~~I~~~~~~g~~~~~~~~~~-~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~-P~~i~vd~~~g 134 (267)
T 1npe_A 58 PSIGRASLHGGEPTTIIRQD-LGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGTQRRVLFDTGLVN-PRGIVTDPVRG 134 (267)
T ss_dssp TEEEEEESSSCCCEEEECTT-CCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSS-EEEEEEETTTT
T ss_pred CEEEEEecCCCCcEEEEECC-CCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCCCEEEEEECCCCC-ccEEEEeeCCC
Confidence 46788887665433322111 1123455554 456 9988 44568899998754433332211111 1233333 68
Q ss_pred EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe--CCEEEEEcCccccCCCCcceEEEEeCCCCceee
Q psy2979 200 FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH--EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQD 277 (400)
Q Consensus 200 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~ 277 (400)
.||+..... ....++++++....-+.+..... ..-.+++.- ++.||+.... .+.+.++|+.+..-..
T Consensus 135 ~lyv~~~~~---~~~~I~~~~~dg~~~~~~~~~~~-~~P~gia~d~~~~~lyv~d~~-------~~~I~~~~~~g~~~~~ 203 (267)
T 1npe_A 135 NLYWTDWNR---DNPKIETSHMDGTNRRILAQDNL-GLPNGLTFDAFSSQLCWVDAG-------THRAECLNPAQPGRRK 203 (267)
T ss_dssp EEEEEECCS---SSCEEEEEETTSCCCEEEECTTC-SCEEEEEEETTTTEEEEEETT-------TTEEEEEETTEEEEEE
T ss_pred EEEEEECCC---CCcEEEEEecCCCCcEEEEECCC-CCCcEEEEcCCCCEEEEEECC-------CCEEEEEecCCCceEE
Confidence 999975321 13568888887554333322111 111233332 5789998655 4589999987643322
Q ss_pred c-cCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEE
Q psy2979 278 L-APMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWE 324 (400)
Q Consensus 278 ~-~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 324 (400)
+ ..+..| .+++.-++.+|+.... .+.+.++|+.+++-.
T Consensus 204 ~~~~~~~P---~gi~~d~~~lyva~~~------~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 204 VLEGLQYP---FAVTSYGKNLYYTDWK------TNSVIAMDLAISKEM 242 (267)
T ss_dssp EEECCCSE---EEEEEETTEEEEEETT------TTEEEEEETTTTEEE
T ss_pred EecCCCCc---eEEEEeCCEEEEEECC------CCeEEEEeCCCCCce
Confidence 2 223333 3455568899997644 568999999887644
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=94.90 E-value=3.1 Score=40.57 Aligned_cols=197 Identities=10% Similarity=-0.068 Sum_probs=102.6
Q ss_pred cCEEEEEECC--C-CCeEEccCCC---CcceeeeEEE-ECC-EEEEEcccCC-----CCCCCeEEEEeCCC------Cce
Q psy2979 166 VDIVYVAASM--H-KILHSLGSLK---FDFDVSGIAM-LDG-FVYAVGGWDG-----SCRLDSVERYDPTK------NEW 226 (400)
Q Consensus 166 ~~~~~~yd~~--~-~~w~~~~~~~---~~r~~~~~~~-~~~-~iyv~GG~~~-----~~~~~~v~~yd~~~------~~W 226 (400)
...+|.++.. . +....+...+ ........+. -++ .|+... .+. ......++.+|..+ ++.
T Consensus 101 ~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 179 (662)
T 3azo_A 101 DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMA-EEFTGEGPSDVRRFLAAVPLDGSAAADRSAV 179 (662)
T ss_dssp TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEE-EEECSSSTTCEEEEEEEEETTSTTTTCGGGS
T ss_pred CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEE-ecccCCCCCCceeEEEEEECCCCccccCCce
Confidence 4578888876 3 5556665533 1112222222 255 444433 221 12235788999988 666
Q ss_pred EEcc-CCCCcccccEEEEeCCEEEEEcCccccCCCC--cceEEEEeCC-CC---ceeeccCCCCCceeeeEE-EECCeEE
Q psy2979 227 SYIE-PMKLAVTSPAVVAHEGMLYVTGGAILEDGDG--IEQVQRYNPK-VN---QWQDLAPMLIPRSGAAIC-ALDSCIY 298 (400)
Q Consensus 227 ~~~~-~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~--~~~v~~yd~~-~~---~W~~~~~~~~~r~~~~~~-~~~~~iy 298 (400)
..+. .-+. ........-+|+..++..... .+.. ...++.+|.. +. ....+..-... .....+ .-+|++|
T Consensus 180 ~~l~~~~~~-~~~~~~~SpDG~~la~~~~~~-~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~-~~~~~~~spdg~l~ 256 (662)
T 3azo_A 180 RELSDDAHR-FVTGPRLSPDGRQAVWLAWDH-PRMPWEGTELKTARVTEDGRFADTRTLLGGPEE-AIAQAEWAPDGSLI 256 (662)
T ss_dssp EESSCSCSS-EECCCEECTTSSEEEEEEECT-TCCTTTCEEEEEEEECTTSCEEEEEEEEEETTB-CEEEEEECTTSCEE
T ss_pred eEEEecCCC-cccCceECCCCCEEEEEECCC-CCCCCCCcEEEEEEECCCCcccccEEeCCCCCc-eEcceEECCCCeEE
Confidence 6554 2221 111112233555444433210 1111 3589999998 45 34433221111 112222 2377877
Q ss_pred EEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCcc----C---cceEEEE-CCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 299 VLGGWHASTENTNRVECYHIAENTWEYKSPMKEKR----Y---RPGIAVI-DGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 299 v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~----~---~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
+.+..++ ...++.+|+.++++..+....... . ....+.. ++++++.+.. ....+|.+|..+++
T Consensus 257 ~~~~~~~----~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 257 VATDRTG----WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-----GAAVLGILDPESGE 327 (662)
T ss_dssp EEECTTS----SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-----SSCEEEEEETTTTE
T ss_pred EEECCCC----CeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-----CccEEEEEECCCCc
Confidence 7765432 348999999899998876543221 1 1123333 6777766542 24678999998887
Q ss_pred EEEec
Q psy2979 371 WEIMS 375 (400)
Q Consensus 371 W~~~~ 375 (400)
.+.+.
T Consensus 328 ~~~l~ 332 (662)
T 3azo_A 328 LVDAA 332 (662)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 76653
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=94.84 E-value=1.9 Score=37.92 Aligned_cols=200 Identities=12% Similarity=0.083 Sum_probs=101.7
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEE-ECCeEEEEEeecCEEEEEECCCCCeEEccCCCC----cceeeeEEEECC
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVV-SGRNTIYCLDIVDIVYVAASMHKILHSLGSLKF----DFDVSGIAMLDG 199 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~-~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~----~r~~~~~~~~~~ 199 (400)
..+..||+.+++...+. .+. .-.+++. -++. +++.. ...++.+|+.+++...+...+. .+.......-++
T Consensus 71 ~~i~~~d~~~~~~~~~~-~~~--~v~~i~~~~dg~-l~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G 145 (326)
T 2ghs_A 71 RELHELHLASGRKTVHA-LPF--MGSALAKISDSK-QLIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSG 145 (326)
T ss_dssp TEEEEEETTTTEEEEEE-CSS--CEEEEEEEETTE-EEEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTS
T ss_pred CEEEEEECCCCcEEEEE-CCC--cceEEEEeCCCe-EEEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCC
Confidence 47889999887655433 222 2233333 3566 77653 4569999999888876654321 122222222266
Q ss_pred EEEEEccc-CCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe-CC-EEEEEcCccccCCCCcceEEEEeCC--CC-
Q psy2979 200 FVYAVGGW-DGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH-EG-MLYVTGGAILEDGDGIEQVQRYNPK--VN- 273 (400)
Q Consensus 200 ~iyv~GG~-~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~v~~yd~~--~~- 273 (400)
++|+.... ........++++| +++...+.. ......+.+.. ++ .+|+.... ...+++||.. +.
T Consensus 146 ~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~--~~~~~~~i~~s~dg~~lyv~~~~-------~~~I~~~d~~~~~Gl 214 (326)
T 2ghs_A 146 ALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA--DISIPNSICFSPDGTTGYFVDTK-------VNRLMRVPLDARTGL 214 (326)
T ss_dssp CEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE--EESSEEEEEECTTSCEEEEEETT-------TCEEEEEEBCTTTCC
T ss_pred CEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC--CCcccCCeEEcCCCCEEEEEECC-------CCEEEEEEcccccCC
Confidence 78774321 1112335688888 466554421 00011122322 44 68887544 2479999875 33
Q ss_pred c------eeeccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEEC----
Q psy2979 274 Q------WQDLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVID---- 342 (400)
Q Consensus 274 ~------W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~---- 342 (400)
. +..... ....-.+++.- ++.+|+.... ...+.+||+....-..+. .|. .....+.++
T Consensus 215 ~~~~~~~~~~~~~--~~~~p~gi~~d~~G~lwva~~~------~~~v~~~d~~g~~~~~i~-~~~--~~~~~~af~g~d~ 283 (326)
T 2ghs_A 215 PTGKAEVFIDSTG--IKGGMDGSVCDAEGHIWNARWG------EGAVDRYDTDGNHIARYE-VPG--KQTTCPAFIGPDA 283 (326)
T ss_dssp BSSCCEEEEECTT--SSSEEEEEEECTTSCEEEEEET------TTEEEEECTTCCEEEEEE-CSC--SBEEEEEEESTTS
T ss_pred cccCceEEEECCC--CCCCCCeeEECCCCCEEEEEeC------CCEEEEECCCCCEEEEEE-CCC--CCcEEEEEecCCC
Confidence 2 222211 01111222222 6788886521 347999999654433332 222 223344442
Q ss_pred CEEEEEcCc
Q psy2979 343 GKIYVLGGE 351 (400)
Q Consensus 343 ~~lyv~GG~ 351 (400)
+.||+....
T Consensus 284 ~~L~vt~~~ 292 (326)
T 2ghs_A 284 SRLLVTSAR 292 (326)
T ss_dssp CEEEEEEBC
T ss_pred CEEEEEecC
Confidence 468887544
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=94.80 E-value=2.2 Score=38.38 Aligned_cols=147 Identities=10% Similarity=0.061 Sum_probs=79.0
Q ss_pred EEEEEcccCCCCCCCeEEEEeCCCCceEEcc--CCCCcccccE--EEE--eCCEEEEEcCccccCCCCcceEEEEeCCCC
Q psy2979 200 FVYAVGGWDGSCRLDSVERYDPTKNEWSYIE--PMKLAVTSPA--VVA--HEGMLYVTGGAILEDGDGIEQVQRYNPKVN 273 (400)
Q Consensus 200 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~--~l~~~~~~~~--~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 273 (400)
..++.|+.+ ..+..||..+++-...- ..+....... ++. .++.+++.|+. ++ .+..||....
T Consensus 171 ~~l~s~s~D-----~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~---D~----~v~~wd~~~~ 238 (380)
T 3iz6_a 171 TRLITGSGD-----QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSC---DT----TVRLWDLRIT 238 (380)
T ss_dssp SCEEEECTT-----SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEET---TS----CEEEEETTTT
T ss_pred CEEEEECCC-----CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEEC---CC----eEEEEECCCC
Confidence 344555544 45888999887654332 2222222221 121 26788888887 55 6888987532
Q ss_pred c--eeeccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCC-cCc----cCcceEEEE--CC
Q psy2979 274 Q--WQDLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPM-KEK----RYRPGIAVI--DG 343 (400)
Q Consensus 274 ~--W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~-~~~----~~~~~~~~~--~~ 343 (400)
. -..+..-.. .-.+++.. ++..++.|+. ...+..||..+++-...-.. +.. ......+.+ ++
T Consensus 239 ~~~~~~~~~h~~--~v~~v~~~p~~~~l~s~s~------D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 310 (380)
T 3iz6_a 239 SRAVRTYHGHEG--DINSVKFFPDGQRFGTGSD------DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISG 310 (380)
T ss_dssp CCCCEEECCCSS--CCCEEEECTTSSEEEEECS------SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSS
T ss_pred CcceEEECCcCC--CeEEEEEecCCCeEEEEcC------CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCC
Confidence 1 111111000 11122222 6677888876 45788999988764432211 111 111223333 67
Q ss_pred EEEEEcCccCCCCCCCeEEEEECCCCcEE
Q psy2979 344 KIYVLGGEEGWDGYHDSIECYDVDNDSWE 372 (400)
Q Consensus 344 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~ 372 (400)
++++.|+. + ..|.+||..+.+-.
T Consensus 311 ~~l~~g~~-d-----g~i~vwd~~~~~~~ 333 (380)
T 3iz6_a 311 RLLFAGYS-N-----GDCYVWDTLLAEMV 333 (380)
T ss_dssp SEEEEECT-T-----SCEEEEETTTCCEE
T ss_pred CEEEEEEC-C-----CCEEEEECCCCceE
Confidence 77777765 2 46899998776543
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=94.80 E-value=1.9 Score=37.60 Aligned_cols=179 Identities=11% Similarity=0.019 Sum_probs=84.3
Q ss_pred eecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE
Q psy2979 164 DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA 243 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~ 243 (400)
.....+..++........................++..++.|+.++ .+..||.....-........ ........
T Consensus 105 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~-----~~~~~d~~~~~~~~~~~~~~-~~~v~~~~ 178 (340)
T 4aow_A 105 SWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK-----TIKLWNTLGVCKYTVQDESH-SEWVSCVR 178 (340)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTS-----CEEEECTTSCEEEEECSSSC-SSCEEEEE
T ss_pred cccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCC-----eEEEEEeCCCceEEEEeccc-cCcccceE
Confidence 4445667777766554333222221121122222445556666543 46677776543322221111 11111111
Q ss_pred e----CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEE-ECCeEEEEcCcCCCCCCCCeEEEEEC
Q psy2979 244 H----EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICA-LDSCIYVLGGWHASTENTNRVECYHI 318 (400)
Q Consensus 244 ~----~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~ 318 (400)
+ .+.+++.|+. ++ .+..||..+.+....-..... .-.+++. -++.+++.|+. ...+..||.
T Consensus 179 ~~~~~~~~~~~s~~~---d~----~i~i~d~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~s~------Dg~i~iwd~ 244 (340)
T 4aow_A 179 FSPNSSNPIIVSCGW---DK----LVKVWNLANCKLKTNHIGHTG-YLNTVTVSPDGSLCASGGK------DGQAMLWDL 244 (340)
T ss_dssp ECSCSSSCEEEEEET---TS----CEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEET------TCEEEEEET
T ss_pred EccCCCCcEEEEEcC---CC----EEEEEECCCCceeeEecCCCC-cEEEEEECCCCCEEEEEeC------CCeEEEEEe
Confidence 1 2346666666 43 688899877654332111111 1112222 26778888876 457888998
Q ss_pred CCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 319 AENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 319 ~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
.+.+-...-. .......+....+..++.++. + ..|.+||..+..
T Consensus 245 ~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~-d-----~~i~iwd~~~~~ 288 (340)
T 4aow_A 245 NEGKHLYTLD--GGDIINALCFSPNRYWLCAAT-G-----PSIKIWDLEGKI 288 (340)
T ss_dssp TTTEEEEEEE--CSSCEEEEEECSSSSEEEEEE-T-----TEEEEEETTTTE
T ss_pred ccCceeeeec--CCceEEeeecCCCCceeeccC-C-----CEEEEEECCCCe
Confidence 8765432211 111111122223334455554 2 468888887764
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=94.78 E-value=2.4 Score=38.70 Aligned_cols=141 Identities=16% Similarity=0.186 Sum_probs=76.1
Q ss_pred EEEEeecCEEEEEECCCCCeEEccCCCCcce-eeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCccc
Q psy2979 160 IYCLDIVDIVYVAASMHKILHSLGSLKFDFD-VSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVT 237 (400)
Q Consensus 160 iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~-~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~ 237 (400)
+..+..-+.++.+|..+++...+-.+..... -.+++.. ++..++.|+.+ ..+..||..+++-... +.....
T Consensus 118 ~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~D-----g~v~iWd~~~~~~~~~--~~~h~~ 190 (420)
T 4gga_A 118 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS-----AEVQLWDVQQQKRLRN--MTSHSA 190 (420)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEE--ECCCSS
T ss_pred EEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECC-----CeEEEEEcCCCcEEEE--EeCCCC
Confidence 4444445678888988887665444332222 2222222 56777778766 3588999988754322 222222
Q ss_pred ccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCC--CCceeeeEEEECCeEEEEcCcCCCCCCCCeEEE
Q psy2979 238 SPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPML--IPRSGAAICALDSCIYVLGGWHASTENTNRVEC 315 (400)
Q Consensus 238 ~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~--~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 315 (400)
...+...++.+.+.|+. ++ .+..+|......... .+. ...........++..++.|+. .+.+..
T Consensus 191 ~v~~~s~~~~~l~sgs~---d~----~i~~~d~~~~~~~~~-~~~~h~~~~~~~~~~~~g~~l~s~~~------D~~v~i 256 (420)
T 4gga_A 191 RVGSLSWNSYILSSGSR---SG----HIHHHDVRVAEHHVA-TLSGHSQEVCGLRWAPDGRHLASGGN------DNLVNV 256 (420)
T ss_dssp CEEEEEEETTEEEEEET---TS----EEEEEETTSSSCEEE-EEECCSSCEEEEEECTTSSEEEEEET------TSCEEE
T ss_pred ceEEEeeCCCEEEEEeC---CC----ceeEeeecccceeeE-EecccccceeeeeecCCCCeeeeeec------cccceE
Confidence 23344567778888877 43 677888765432211 111 111111112225666666665 346777
Q ss_pred EECCCC
Q psy2979 316 YHIAEN 321 (400)
Q Consensus 316 yd~~~~ 321 (400)
+|..++
T Consensus 257 ~~~~~~ 262 (420)
T 4gga_A 257 WPSAPG 262 (420)
T ss_dssp EESSCC
T ss_pred Eeeccc
Confidence 776654
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.93 Score=40.01 Aligned_cols=136 Identities=12% Similarity=0.065 Sum_probs=69.6
Q ss_pred eecCEEEEEECCCCCeEEccCCC-CcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEE
Q psy2979 164 DIVDIVYVAASMHKILHSLGSLK-FDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAV 241 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~~-~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~ 241 (400)
.....+..||..+........+. ....-.+++.. ++..++.|+.+ ..+..||..+++.........+.. ++
T Consensus 61 ~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~v~--~~ 133 (368)
T 3mmy_A 61 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD-----KTAKMWDLSSNQAIQIAQHDAPVK--TI 133 (368)
T ss_dssp ETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEEEECSSCEE--EE
T ss_pred CCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC-----CcEEEEEcCCCCceeeccccCceE--EE
Confidence 44456777777653322211111 11111122222 55566666654 468899999887655433222221 22
Q ss_pred E---EeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEEC
Q psy2979 242 V---AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHI 318 (400)
Q Consensus 242 ~---~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~ 318 (400)
+ .-++.+++.|+. ++ .+..||..+.+-... +..+....+.....+.+++.++ ...+..||.
T Consensus 134 ~~~~~~~~~~l~~~~~---dg----~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~ 197 (368)
T 3mmy_A 134 HWIKAPNYSCVMTGSW---DK----TLKFWDTRSSNPMMV--LQLPERCYCADVIYPMAVVATA-------ERGLIVYQL 197 (368)
T ss_dssp EEEECSSCEEEEEEET---TS----EEEEECSSCSSCSEE--EECSSCEEEEEEETTEEEEEEG-------GGCEEEEEC
T ss_pred EEEeCCCCCEEEEccC---CC----cEEEEECCCCcEEEE--EecCCCceEEEecCCeeEEEeC-------CCcEEEEEe
Confidence 2 236777888877 43 789999876642221 1122223333444555544443 456778887
Q ss_pred CCCe
Q psy2979 319 AENT 322 (400)
Q Consensus 319 ~~~~ 322 (400)
....
T Consensus 198 ~~~~ 201 (368)
T 3mmy_A 198 ENQP 201 (368)
T ss_dssp SSSC
T ss_pred cccc
Confidence 6553
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=94.61 E-value=3.5 Score=39.81 Aligned_cols=116 Identities=16% Similarity=0.124 Sum_probs=67.1
Q ss_pred EEEECCeEEEEEeecCEEEEEECCCCC--eEEccCCCCc---c---eeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCC
Q psy2979 152 LVVSGRNTIYCLDIVDIVYVAASMHKI--LHSLGSLKFD---F---DVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTK 223 (400)
Q Consensus 152 ~~~~~~~~iyv~~~~~~~~~yd~~~~~--w~~~~~~~~~---r---~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 223 (400)
-++.++. +|+......++.+|..+++ |+.-...+.. . ...+.+..+++||+... ...+..+|..+
T Consensus 64 P~v~~g~-vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~------dg~l~AlD~~T 136 (582)
T 1flg_A 64 AIVSDGV-IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL------DASVVALNKNT 136 (582)
T ss_dssp CEEETTE-EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET------TTEEEEEESSS
T ss_pred cEEECCE-EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC------CCEEEEEECCC
Confidence 3556888 9988554569999998776 8764433211 1 11334567889988532 24689999988
Q ss_pred Cc--eEEccCCCCcc--cccEEEEeCC------EEEEEcCccccCCCC-cceEEEEeCCCCc--eee
Q psy2979 224 NE--WSYIEPMKLAV--TSPAVVAHEG------MLYVTGGAILEDGDG-IEQVQRYNPKVNQ--WQD 277 (400)
Q Consensus 224 ~~--W~~~~~l~~~~--~~~~~~~~~~------~iyv~GG~~~~~~~~-~~~v~~yd~~~~~--W~~ 277 (400)
++ |+.-..-+... ...+-++.++ .+|+-... .... ...++.||+.+.+ |+.
T Consensus 137 G~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~---~e~~~~g~v~alD~~tG~~~W~~ 200 (582)
T 1flg_A 137 GKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSG---DEFGVVGRLFARDPDTGEEIWMR 200 (582)
T ss_dssp CCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBC---GGGCCBCEEEEECTTTCCEEEEE
T ss_pred CCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccc---cccCCCCEEEEEECCCCCEEeec
Confidence 84 87643221111 1112234555 66653211 0000 3478999988765 864
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=94.60 E-value=2.1 Score=37.34 Aligned_cols=212 Identities=12% Similarity=0.042 Sum_probs=102.2
Q ss_pred EEEEeccCCCcccceEEEEEc-CCCceEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCC-------eEEcc
Q psy2979 112 IIAVGGEDDKVVLRSVEGFCV-KTKVWKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKI-------LHSLG 183 (400)
Q Consensus 112 i~~~gg~~~~~~~~~~~~yd~-~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~-------w~~~~ 183 (400)
.++.|+.+ ..+..||. .+++...+...+....-.+++...+..++.......+..+|..+.. ...+.
T Consensus 71 ~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 145 (342)
T 1yfq_A 71 QIYVGTVQ-----GEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN 145 (342)
T ss_dssp EEEEEETT-----SCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS
T ss_pred EEEEEcCC-----CeEEEEEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeee
Confidence 45556544 46888998 8777665544112222223343333314444556678888876400 11222
Q ss_pred CCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCC-Cc--eEEccCCCCcccccEEEEe--CCEEEEEcCccccC
Q psy2979 184 SLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTK-NE--WSYIEPMKLAVTSPAVVAH--EGMLYVTGGAILED 258 (400)
Q Consensus 184 ~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~-~~--W~~~~~l~~~~~~~~~~~~--~~~iyv~GG~~~~~ 258 (400)
.+..+..-.++....+. +++|+.+ ..+..||..+ .. ...... +....-.+++.. ++..+++|+. +
T Consensus 146 ~~~~~~~v~~~~~~~~~-l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~l~~~~~---d 215 (342)
T 1yfq_A 146 NTKVKNKIFTMDTNSSR-LIVGMNN-----SQVQWFRLPLCEDDNGTIEES-GLKYQIRDVALLPKEQEGYACSSI---D 215 (342)
T ss_dssp SSSSCCCEEEEEECSSE-EEEEEST-----TEEEEEESSCCTTCCCEEEEC-SCSSCEEEEEECSGGGCEEEEEET---T
T ss_pred EEeeCCceEEEEecCCc-EEEEeCC-----CeEEEEECCccccccceeeec-CCCCceeEEEECCCCCCEEEEEec---C
Confidence 22222223334444555 5555543 4688899887 33 222211 111111222332 5677777776 4
Q ss_pred CCCcceEEEEeCCCC--------ceeeccCCC--C---CceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeE
Q psy2979 259 GDGIEQVQRYNPKVN--------QWQDLAPML--I---PRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTW 323 (400)
Q Consensus 259 ~~~~~~v~~yd~~~~--------~W~~~~~~~--~---~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 323 (400)
+ .+..||.... ......... . .......+.. ++.+++.|+. ...+..||..+.+.
T Consensus 216 g----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------dg~i~vwd~~~~~~ 285 (342)
T 1yfq_A 216 G----RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS------DGIISCWNLQTRKK 285 (342)
T ss_dssp S----EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET------TSCEEEEETTTTEE
T ss_pred C----cEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecC------CceEEEEcCccHhH
Confidence 4 4555554333 111111100 0 0011122222 5676777765 45799999988764
Q ss_pred EEccCCcCc--cCcceEEEECCEEEEEcCc
Q psy2979 324 EYKSPMKEK--RYRPGIAVIDGKIYVLGGE 351 (400)
Q Consensus 324 ~~~~~~~~~--~~~~~~~~~~~~lyv~GG~ 351 (400)
... ++.. ....+++ .+++.++.|+.
T Consensus 286 ~~~--~~~~h~~~v~~~~-~~~~~l~s~s~ 312 (342)
T 1yfq_A 286 IKN--FAKFNEDSVVKIA-CSDNILCLATS 312 (342)
T ss_dssp EEE--CCCCSSSEEEEEE-ECSSEEEEEEE
T ss_pred hhh--hhcccCCCceEec-CCCCeEEEEec
Confidence 332 2211 1112233 77888888876
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.58 E-value=4.3 Score=40.76 Aligned_cols=199 Identities=12% Similarity=0.021 Sum_probs=109.8
Q ss_pred eecCEEEEEECCCCCeEEccCCCCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCC----ceEEc-c-CCCCc
Q psy2979 164 DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKN----EWSYI-E-PMKLA 235 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~----~W~~~-~-~l~~~ 235 (400)
.....+..++.....+..+..- .+.-.+++.. ++.||+.-.. ...+.++++... ....+ . .+..+
T Consensus 401 an~~~Ir~i~l~~~~~~~l~~~--~~~~~gl~~d~~~~~lY~sD~~-----~~~I~~~~l~g~~~~~~~~~vi~~~l~~P 473 (791)
T 3m0c_C 401 TNRHEVRKMTLDRSEYTSLIPN--LRNVVALDTEVASNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVISRDIQAP 473 (791)
T ss_dssp ECBSSEEEECTTSCCCEEEECS--CSSEEEEEEETTTTEEEEEETT-----TTEEEEEEC--------CEEEECSSCSCC
T ss_pred ccccceeEeeccCCcceeeecC--CCceEEEeecccCCeeEEeecc-----ceeEEEEeccCCCCCcceeEEEecCCCCc
Confidence 3445677777777666655432 1222333333 6789987442 256788887642 22222 2 22222
Q ss_pred ccccEEEE--eCCEEEEEcCccccCCCCcceEEEEeCCCCceeecc--CCCCCceeeeEEEE--CCeEEEEcCcCCCCCC
Q psy2979 236 VTSPAVVA--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLA--PMLIPRSGAAICAL--DSCIYVLGGWHASTEN 309 (400)
Q Consensus 236 ~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~ 309 (400)
.++++ .+++||+.-.. ...|+++++....-..+. .+..|+ ++++- ++.||+..-..
T Consensus 474 ---~GLAvD~~~~~LY~tD~~-------~~~I~v~~ldG~~~~~l~~~~l~~P~---gIaVDp~~g~LYwtD~g~----- 535 (791)
T 3m0c_C 474 ---DGLAVDWIHSNIYWTDSV-------LGTVSVADTKGVKRKTLFRENGSKPR---AIVVDPVHGFMYWTDWGT----- 535 (791)
T ss_dssp ---CEEEEETTTTEEEEEETT-------TTEEEEEETTSSSEEEEEECTTCCEE---EEEEETTTTEEEEEECSS-----
T ss_pred ---ceeeeeecCCcEEEEecC-------CCeEEEEeCCCCeEEEEEeCCCCCcc---eEEEecCCCCEEEecCCC-----
Confidence 23444 47899998655 458999999876655443 333332 34443 68999986210
Q ss_pred CCeEEEEECCCCeEEEccCCcCccCcceEEEE---CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCC-CCCCcee
Q psy2979 310 TNRVECYHIAENTWEYKSPMKEKRYRPGIAVI---DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLP-SARSWLG 385 (400)
Q Consensus 310 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~r~~~~ 385 (400)
...|+++++....-..+.. .....+...++ +++||+.-.. .+.|+++|+....=+.+..-. .-....+
T Consensus 536 ~~~I~~~~~dG~~~~~lv~--~~l~~P~GLavD~~~~~LYwaD~~------~~~I~~~d~dG~~~~~v~~~~~~l~~P~g 607 (791)
T 3m0c_C 536 PAKIKKGGLNGVDIYSLVT--ENIQWPNGITLDLLSGRLYWVDSK------LHSISSIDVNGGNRKTILEDEKRLAHPFS 607 (791)
T ss_dssp SCEEEEEETTSCCEEEEEC--SSCSCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEEECTTTTSSEEE
T ss_pred CCeEEEEecCCCceEEEEe--CCCCCceEEEEecCCCeEEEEeCC------CCcEEEEecCCCceEEEecCCCccCCCCE
Confidence 3689999987655444332 11223344444 6899998543 368999998765444432211 1112356
Q ss_pred eEEEcccccc
Q psy2979 386 CVPLQIHKSQ 395 (400)
Q Consensus 386 ~~~~~~~~~~ 395 (400)
+++.++.+|+
T Consensus 608 lav~~~~lYw 617 (791)
T 3m0c_C 608 LAVFEDKVFW 617 (791)
T ss_dssp EEEETTEEEE
T ss_pred EEEeCCEEEE
Confidence 6666665544
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.37 E-value=3 Score=38.07 Aligned_cols=149 Identities=13% Similarity=0.059 Sum_probs=80.4
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe--CCEEEEEcCccccCCCCcceEEEEeCCCCce
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH--EGMLYVTGGAILEDGDGIEQVQRYNPKVNQW 275 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W 275 (400)
++.+++.|+.+ ..+..||+.+.+-...-..+........+.+ ++..++.|+. ++ .+..||..+.+.
T Consensus 181 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~---dg----~i~iwd~~~~~~ 248 (437)
T 3gre_A 181 EKSLLVALTNL-----SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTT---RG----IIDIWDIRFNVL 248 (437)
T ss_dssp SCEEEEEEETT-----SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEET---TS----CEEEEETTTTEE
T ss_pred CCCEEEEEeCC-----CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcC---CC----eEEEEEcCCccE
Confidence 46777777765 4688999988754322111101111122222 6777788877 54 689999887654
Q ss_pred eeccCCCCCceeeeEEEE-----CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEc-cCC----------c---------
Q psy2979 276 QDLAPMLIPRSGAAICAL-----DSCIYVLGGWHASTENTNRVECYHIAENTWEYK-SPM----------K--------- 330 (400)
Q Consensus 276 ~~~~~~~~~r~~~~~~~~-----~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~-~~~----------~--------- 330 (400)
...-..+....-.+++.. ++.+++.|+. ...+..||..+++-... ... |
T Consensus 249 ~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 322 (437)
T 3gre_A 249 IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSS------KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELN 322 (437)
T ss_dssp EEEEBCTTCEEEEEEEECTTTCTTEEEEEEEST------TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCC
T ss_pred EEEEecCCCCceEEEEeccccCCCccEEEEEcC------CCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccce
Confidence 332111211111122111 3456666665 45799999987763321 100 0
Q ss_pred -----CccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 331 -----EKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 331 -----~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
......+++..++++++.||. + ..|.+||..+.+
T Consensus 323 ~~~~~~~~~v~~l~~~~~~~l~s~~~-d-----~~i~~wd~~~~~ 361 (437)
T 3gre_A 323 FCGIRSLNALSTISVSNDKILLTDEA-T-----SSIVMFSLNELS 361 (437)
T ss_dssp CCCCCSGGGGCCEEEETTEEEEEEGG-G-----TEEEEEETTCGG
T ss_pred ecccccCCceEEEEECCceEEEecCC-C-----CeEEEEECCCcc
Confidence 000112233447888888887 2 468888887654
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=94.30 E-value=3.1 Score=37.94 Aligned_cols=244 Identities=10% Similarity=0.036 Sum_probs=115.8
Q ss_pred ceEEEEEcCCCceEEccCCcccc-eeeeEEEE-CCeEEEEE-eecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAI-SKHGLVVS-GRNTIYCL-DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFV 201 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~-~~~~~~~~-~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~i 201 (400)
+++.++|..+++...+-.+.... .-.+++.. ++. .++. .....+..+|..+++-... +............++.+
T Consensus 125 ~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~-~lasgs~Dg~v~iWd~~~~~~~~~--~~~h~~~v~~~s~~~~~ 201 (420)
T 4gga_A 125 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN-YLAVGTSSAEVQLWDVQQQKRLRN--MTSHSARVGSLSWNSYI 201 (420)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEEETTE
T ss_pred CEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCC-EEEEEECCCeEEEEEcCCCcEEEE--EeCCCCceEEEeeCCCE
Confidence 47899999998876554433222 22344444 334 3333 5556788899887653322 22111222233446667
Q ss_pred EEEcccCCCCCCCeEEEEeCCCCceEEc--cCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCc--eee
Q psy2979 202 YAVGGWDGSCRLDSVERYDPTKNEWSYI--EPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ--WQD 277 (400)
Q Consensus 202 yv~GG~~~~~~~~~v~~yd~~~~~W~~~--~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~ 277 (400)
.+.|+.+ ..+..+|......... ..-. ..........++...+.|+. ++ .+..+|..+.+ +..
T Consensus 202 l~sgs~d-----~~i~~~d~~~~~~~~~~~~~h~-~~~~~~~~~~~g~~l~s~~~---D~----~v~i~~~~~~~~~~~~ 268 (420)
T 4gga_A 202 LSSGSRS-----GHIHHHDVRVAEHHVATLSGHS-QEVCGLRWAPDGRHLASGGN---DN----LVNVWPSAPGEGGWVP 268 (420)
T ss_dssp EEEEETT-----SEEEEEETTSSSCEEEEEECCS-SCEEEEEECTTSSEEEEEET---TS----CEEEEESSCCSSCSCC
T ss_pred EEEEeCC-----CceeEeeecccceeeEEecccc-cceeeeeecCCCCeeeeeec---cc----cceEEeecccccccee
Confidence 7777755 3466777665433211 1111 11111112235666667766 43 57777765543 111
Q ss_pred ccCCCCCce-eeeEEEE--CCeEEEE-cCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCc
Q psy2979 278 LAPMLIPRS-GAAICAL--DSCIYVL-GGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGE 351 (400)
Q Consensus 278 ~~~~~~~r~-~~~~~~~--~~~iyv~-GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~ 351 (400)
+........ -.+.+.. +..+++. ||.. ...+..||..+++-...-..... ...++.. ++.+++.+|.
T Consensus 269 ~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~-----D~~I~iwd~~t~~~~~~~~~~~~--v~~~~~~~~~~~lv~~sg~ 341 (420)
T 4gga_A 269 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTS-----DRHIRIWNVCSGACLSAVDAHSQ--VCSILWSPHYKELISGHGF 341 (420)
T ss_dssp SEEECCCSSCEEEEEECTTCTTEEEEEECTT-----TCEEEEEETTTTEEEEEEECSSC--EEEEEEETTTTEEEEEECT
T ss_pred eeeecccCCceeeeeeCCCcccEEEEEeecC-----CCEEEEEeCCccccceeeccccc--eeeeeecCCCCeEEEEEec
Confidence 111111111 1112222 4455544 4431 35788999988875443222211 1111112 4566665554
Q ss_pred cCCCCCCCeEEEEECCCCcEEEecCCCCCC-CceeeEEEccccccccc
Q psy2979 352 EGWDGYHDSIECYDVDNDSWEIMSHLPSAR-SWLGCVPLQIHKSQFVD 398 (400)
Q Consensus 352 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r-~~~~~~~~~~~~~~~~~ 398 (400)
. ...|.+||..+.+ .+..+..-. .-.+++.-.+..+++.+
T Consensus 342 -~----d~~I~iwd~~~~~--~v~~l~gH~~~V~~l~~spdg~~l~S~ 382 (420)
T 4gga_A 342 -A----QNQLVIWKYPTMA--KVAELKGHTSRVLSLTMSPDGATVASA 382 (420)
T ss_dssp -T----TCCEEEEETTTCC--EEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred -C----CCEEEEEECCCCc--EEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 2 2468889987653 333333211 12233444444555443
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.29 E-value=2.4 Score=37.31 Aligned_cols=65 Identities=8% Similarity=0.120 Sum_probs=40.9
Q ss_pred CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcE
Q psy2979 294 DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSW 371 (400)
Q Consensus 294 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W 371 (400)
++..++.|+. ...+..||..+++-........... ..++.+ ++++++.|+. + ..|.+||..+.+-
T Consensus 138 ~~~~l~s~s~------dg~i~~wd~~~~~~~~~~~~~~~~~-i~~~~~~pdg~~lasg~~-d-----g~i~iwd~~~~~~ 204 (343)
T 3lrv_A 138 NTEYFIWADN------RGTIGFQSYEDDSQYIVHSAKSDVE-YSSGVLHKDSLLLALYSP-D-----GILDVYNLSSPDQ 204 (343)
T ss_dssp -CCEEEEEET------TCCEEEEESSSSCEEEEECCCSSCC-CCEEEECTTSCEEEEECT-T-----SCEEEEESSCTTS
T ss_pred CCCEEEEEeC------CCcEEEEECCCCcEEEEEecCCCCc-eEEEEECCCCCEEEEEcC-C-----CEEEEEECCCCCC
Confidence 4667777775 4578999998887644332222211 223333 6788888876 3 4688999988753
|
| >3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A | Back alignment and structure |
|---|
Probab=94.19 E-value=0.6 Score=38.94 Aligned_cols=102 Identities=8% Similarity=0.026 Sum_probs=58.9
Q ss_pred EeCCEEEEEcCccccCCCCcceEEEEe--CCC--C-----------ceeeccCCCCCceeeeEEEE--CCeEEEEcCcCC
Q psy2979 243 AHEGMLYVTGGAILEDGDGIEQVQRYN--PKV--N-----------QWQDLAPMLIPRSGAAICAL--DSCIYVLGGWHA 305 (400)
Q Consensus 243 ~~~~~iyv~GG~~~~~~~~~~~v~~yd--~~~--~-----------~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~ 305 (400)
..++++|++-|. .+|+|+ +.+ + .|..++....+...=++... ++++|++-|.
T Consensus 70 ~~~g~~~fFKg~---------~~Wr~~~~~~~~~~~~~~gP~~I~~~w~gLp~~~~p~~IDAA~~~~~~~k~yfFkG~-- 138 (227)
T 3lp9_A 70 TENNEAFIFYEN---------FCALIDYAPHSKKDKIILGPKKIADVFPFFEGTVFESGIDAAYRSTRGKEVYLFKGD-- 138 (227)
T ss_dssp CSTTEEEEEETT---------EEEEEECCTTTCCCEEEEEEEEHHHHSGGGTTSTTTTCCSEEEECSSTTEEEEEETT--
T ss_pred CCCCEEEEEeCC---------EEEEEeCCCCccccccccCceEHhhhcCCCCCccCCCcccEEEEECCCCEEEEEECC--
Confidence 368999999887 789998 321 1 12222211002122223332 6899999874
Q ss_pred CCCCCCeEEEEECCCCeEEE-----cc-CCcCc------cCcceEEE--ECCEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 306 STENTNRVECYHIAENTWEY-----KS-PMKEK------RYRPGIAV--IDGKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 306 ~~~~~~~v~~yd~~~~~W~~-----~~-~~~~~------~~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
..|+||..+++-.. +. .+|.. ..--++.. .++++|++-|. ..|+||..++
T Consensus 139 ------~yw~~d~~~~~~~~gyPk~i~~g~p~~~~~g~p~~iDAA~~~~~~g~~YfFkg~--------~Ywr~d~~~~ 202 (227)
T 3lp9_A 139 ------QYARIDYGSNSMVNKEIKSISSGYPCFRNTIFESGADAAFASHKTNEVYFFKDD--------HYARVKVTPX 202 (227)
T ss_dssp ------EEEEEETTTTEESSSSCEEHHHHCGGGTTSGGGGCCSEEEECSSTTEEEEEETT--------EEEEEECCSS
T ss_pred ------EEEEEeCCCccccCCCCeEHHHCCCCccccccCCCccEEEEcCCCceEEEEECC--------EEEEEECCcc
Confidence 79999987654211 11 12211 11222333 25899999885 6799998876
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=94.17 E-value=2.7 Score=36.87 Aligned_cols=102 Identities=12% Similarity=0.004 Sum_probs=51.5
Q ss_pred EEEEEeccCCCcccceEEEEEcCCCceEE-ccCCcccceeeeEEEE--CCeEEEEE-eecCEEEEEECCCCCeEEcc-CC
Q psy2979 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKT-LSCLPFAISKHGLVVS--GRNTIYCL-DIVDIVYVAASMHKILHSLG-SL 185 (400)
Q Consensus 111 ~i~~~gg~~~~~~~~~~~~yd~~~~~w~~-~~~~~~~~~~~~~~~~--~~~~iyv~-~~~~~~~~yd~~~~~w~~~~-~~ 185 (400)
.+++.|+.+ ..+.+||..+++-.. +.. ....-.+++.. ++. +++. .....+..+|..+++....- .+
T Consensus 86 ~~l~~~~~d-----g~i~v~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 157 (366)
T 3k26_A 86 PLLAVAGSR-----GIIRIINPITMQCIKHYVG--HGNAINELKFHPRDPN-LLLSVSKDHALRLWNIQTDTLVAIFGGV 157 (366)
T ss_dssp EEEEEEETT-----CEEEEECTTTCCEEEEEES--CCSCEEEEEECSSCTT-EEEEEETTSCEEEEETTTTEEEEEECST
T ss_pred CEEEEecCC-----CEEEEEEchhceEeeeecC--CCCcEEEEEECCCCCC-EEEEEeCCCeEEEEEeecCeEEEEeccc
Confidence 455666654 478888887765332 111 11112233333 334 3333 55567888998876543321 11
Q ss_pred C-CcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCc
Q psy2979 186 K-FDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNE 225 (400)
Q Consensus 186 ~-~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 225 (400)
. ....-.+++.. ++..++.|+.+ ..+..||..+.+
T Consensus 158 ~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~ 194 (366)
T 3k26_A 158 EGHRDEVLSADYDLLGEKIMSCGMD-----HSLKLWRINSKR 194 (366)
T ss_dssp TSCSSCEEEEEECTTSSEEEEEETT-----SCEEEEESCSHH
T ss_pred ccccCceeEEEECCCCCEEEEecCC-----CCEEEEECCCCc
Confidence 1 11111222222 45566667655 358888887653
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.02 E-value=5 Score=39.38 Aligned_cols=178 Identities=12% Similarity=0.075 Sum_probs=86.9
Q ss_pred eecCEEEEEECCCCCeEEccCCCCcceeeeEEE-ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccc-cEE
Q psy2979 164 DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAM-LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTS-PAV 241 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~-~~~ 241 (400)
.....+..+|..+++-...-. .+...-.+++. .++..++.|+.+ .++..||.....-..+......... ..+
T Consensus 449 s~Dg~v~vwd~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~D-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 522 (694)
T 3dm0_A 449 SWDGELRLWDLAAGVSTRRFV-GHTKDVLSVAFSLDNRQIVSASRD-----RTIKLWNTLGECKYTISEGGEGHRDWVSC 522 (694)
T ss_dssp ETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECTTSSCEEEEETT-----SCEEEECTTSCEEEEECSSTTSCSSCEEE
T ss_pred eCCCcEEEEECCCCcceeEEe-CCCCCEEEEEEeCCCCEEEEEeCC-----CEEEEEECCCCcceeeccCCCCCCCcEEE
Confidence 555678888987664321100 01111112222 255566667655 3577888765432222221111111 122
Q ss_pred EEe--CC--EEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCce-eeeEEE-ECCeEEEEcCcCCCCCCCCeEEE
Q psy2979 242 VAH--EG--MLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRS-GAAICA-LDSCIYVLGGWHASTENTNRVEC 315 (400)
Q Consensus 242 ~~~--~~--~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~ 315 (400)
+.+ ++ ..++.|+. ++ .+..||..+.+-... +..... -.+++. -++.+++.|+. ...+..
T Consensus 523 ~~~~~~~~~~~l~s~s~---d~----~v~vwd~~~~~~~~~--~~~h~~~v~~v~~spdg~~l~sg~~------Dg~i~i 587 (694)
T 3dm0_A 523 VRFSPNTLQPTIVSASW---DK----TVKVWNLSNCKLRST--LAGHTGYVSTVAVSPDGSLCASGGK------DGVVLL 587 (694)
T ss_dssp EEECSCSSSCEEEEEET---TS----CEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEET------TSBCEE
T ss_pred EEEeCCCCcceEEEEeC---CC----eEEEEECCCCcEEEE--EcCCCCCEEEEEEeCCCCEEEEEeC------CCeEEE
Confidence 222 22 45666766 44 688899876653322 111111 112222 26778888876 457888
Q ss_pred EECCCCeEEEccCCcCccCcceEEEE-CCEEEEEcCccCCCCCCCeEEEEECCCCcE
Q psy2979 316 YHIAENTWEYKSPMKEKRYRPGIAVI-DGKIYVLGGEEGWDGYHDSIECYDVDNDSW 371 (400)
Q Consensus 316 yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W 371 (400)
||..+++-.. .+.......+++.. ++.+++. +. + +.|.+||..+++-
T Consensus 588 wd~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~~-~~-~-----~~i~iwd~~~~~~ 635 (694)
T 3dm0_A 588 WDLAEGKKLY--SLEANSVIHALCFSPNRYWLCA-AT-E-----HGIKIWDLESKSI 635 (694)
T ss_dssp EETTTTEEEE--CCBCSSCEEEEEECSSSSEEEE-EE-T-----TEEEEEETTTTEE
T ss_pred EECCCCceEE--EecCCCcEEEEEEcCCCcEEEE-Ec-C-----CCEEEEECCCCCC
Confidence 9988876432 22222111222222 4444443 33 1 3588999888754
|
| >1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A* | Back alignment and structure |
|---|
Probab=94.00 E-value=1.9 Score=40.05 Aligned_cols=134 Identities=14% Similarity=0.136 Sum_probs=81.9
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEc--cCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCce
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYI--EPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQW 275 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~--~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W 275 (400)
++++|++-| +..++||..+++.... +.+|. --++...++++|++-|. ..++||+.+.+-
T Consensus 158 ~~~~yfFkG-------~~yw~yd~~~~~~~~~~w~gi~~---iDAA~~~~g~~YfFkG~---------~y~rfd~~~~~v 218 (460)
T 1qhu_A 158 DEGILFFQG-------NRKWFWDLTTGTKKERSWPAVGN---CTSALRWLGRYYCFQGN---------QFLRFNPVSGEV 218 (460)
T ss_dssp SSEEEEEET-------TEEEEEETTTTEEEEECCTTSCC---CSEEEEETTEEEEEETT---------EEEEECTTTCCC
T ss_pred CCeEEEEec-------ccEEEEecccceeecccCCCCCc---cchheeeCCceEEEECC---------EEEEEcCccCcc
Confidence 678898887 5689999988765432 23432 23555568999999887 789999866542
Q ss_pred e------------eccCCC------------------CCc-eeeeEEE-ECCeEEEEcCcCCCCCCCCeEEEEECCCCeE
Q psy2979 276 Q------------DLAPML------------------IPR-SGAAICA-LDSCIYVLGGWHASTENTNRVECYHIAENTW 323 (400)
Q Consensus 276 ~------------~~~~~~------------------~~r-~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 323 (400)
. .++... .+. ..-+++. .++++|++-|. ..|++|...+.+
T Consensus 219 ~~gyPk~is~~w~~c~~~g~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~tYFFKg~--------~yWR~~~~~~~~ 290 (460)
T 1qhu_A 219 PPGYPLDVRDYFLSCPGRGHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSGS--------HYWRLDTNRDGW 290 (460)
T ss_dssp CTTCCEEHHHHTSCCTTCCSCC-------CCCTTTTTCTTCCCCEEEECTTCCEEEEETT--------EEEECTTGGGCC
T ss_pred cCCCCcchhhcccCCCCCCCccccccCCccccccccccCCCCcCEEEecCCCeEEEEeCC--------EEEEEecCCCCc
Confidence 2 211110 011 1223333 47899999864 688888755432
Q ss_pred E--Ec----cCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 324 E--YK----SPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 324 ~--~~----~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
. .+ +.+|. .--++...++++|++-|. .+|+|+..+
T Consensus 291 ~p~~Is~~WpglP~--~IDAAf~~~~~~yfFkG~--------~yw~f~~~~ 331 (460)
T 1qhu_A 291 HSWPIAHQWPQGPS--TVDAAFSWEDKLYLIQDT--------KVYVFLTKG 331 (460)
T ss_dssp CCEEGGGTCTTSCS--SCSEEEEETTEEEEEETT--------EEEEEECSB
T ss_pred CccchhhhccCCCC--CCcEEEEECCeEEEEeCC--------EEEEEeCCC
Confidence 1 11 12222 223344458999999875 688998653
|
| >1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=93.75 E-value=2.4 Score=34.70 Aligned_cols=145 Identities=12% Similarity=0.051 Sum_probs=83.1
Q ss_pred eeEEEECCeEEEEEeecCEEEEEECCCCCeEE--c----cCCCCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeC
Q psy2979 150 HGLVVSGRNTIYCLDIVDIVYVAASMHKILHS--L----GSLKFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDP 221 (400)
Q Consensus 150 ~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~--~----~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~ 221 (400)
-+++...+. +|++. .+.+|.+++....+.. + +.+|. .--++... ++++|++-| +.+++|+.
T Consensus 27 DAi~~~~g~-~y~Fk-g~~~wr~~~~~~~~~p~~I~~~wp~Lp~--~iDAa~~~~~~~~iyfFkG-------~~~w~~~~ 95 (207)
T 1pex_A 27 DAITSLRGE-TMIFK-DRFFWRLHPQQVDAELFLTKSFWPELPN--RIDAAYEHPSHDLIFIFRG-------RKFWALNG 95 (207)
T ss_dssp SEEEEETTE-EEEEE-TTEEEEECSSSSCCEEEEHHHHCTTSCS--SCCEEEEETTTTEEEEEET-------TEEEEEST
T ss_pred eEEEeCCCc-EEEEE-CCEEEEEeCCCcCCCceehhHhccCCCC--CccEEEEeccCCcEEEEcc-------CEEEEEeC
Confidence 355667888 88883 3567777765433321 1 22332 11222223 589999987 56788864
Q ss_pred CCCce---EEccC--CCCcccccEEEE-e--CCEEEEEcCccccCCCCcceEEEEeCCCCceeec---------cCCCCC
Q psy2979 222 TKNEW---SYIEP--MKLAVTSPAVVA-H--EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDL---------APMLIP 284 (400)
Q Consensus 222 ~~~~W---~~~~~--l~~~~~~~~~~~-~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~---------~~~~~~ 284 (400)
.+-.- ..+.. +|.....--+|. . ++++|++-|. ..|+||..+++-..- +.+|
T Consensus 96 ~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG~---------~ywr~d~~~~~~d~gyPr~i~~~~~Gip-- 164 (207)
T 1pex_A 96 YDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGN---------QVWRYDDTNHIMDKDYPRLIEEDFPGIG-- 164 (207)
T ss_dssp TCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEETT---------EEEEEETTTTEECSSCCCBHHHHSTTSC--
T ss_pred CeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeCC---------EEEEEeCcCccccCCCCccHHHcCCCCC--
Confidence 32211 22222 332212222333 2 5899999887 789999876542211 1122
Q ss_pred ceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEE
Q psy2979 285 RSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWE 324 (400)
Q Consensus 285 r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 324 (400)
..--++...++++|++-|. ..++||..+++=.
T Consensus 165 ~~iDaAf~~~g~~YfFkg~--------~y~rf~~~~~~v~ 196 (207)
T 1pex_A 165 DKVDAVYEKNGYIYFFNGP--------IQFEYSIWSNRIV 196 (207)
T ss_dssp SCCSEEEEETTEEEEEETT--------EEEEEETTTTEEE
T ss_pred CCccEEEEcCCcEEEEECC--------EEEEEeCCccEEe
Confidence 2233444569999999864 7999999877643
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=93.67 E-value=7.7 Score=40.30 Aligned_cols=226 Identities=7% Similarity=-0.078 Sum_probs=109.2
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCCC---Cc------ceeeeEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLK---FD------FDVSGIA 195 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~---~~------r~~~~~~ 195 (400)
..++.++...+....+...... ......-++. .+++.....++.+|........+..-. .+ ....+++
T Consensus 226 ~~l~~~~~~g~~~~~l~~~~~~--~~~~~SpDG~-~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~ 302 (1045)
T 1k32_A 226 GQIYSTDLDGKDLRKHTSFTDY--YPRHLNTDGR-RILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAED 302 (1045)
T ss_dssp CEEEEEETTSCSCEECCCCCSS--CEEEEEESSS-CEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEE
T ss_pred eEEEEEeCCCCcceEecCCCCc--ceeeEcCCCC-EEEEEeCCEEEEecCCceEeeeeccCcccccccccccccccceee
Confidence 4566666655555554432211 1112223444 333334567788887554444332210 00 0111222
Q ss_pred E--ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEE-EEeCCC
Q psy2979 196 M--LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQ-RYNPKV 272 (400)
Q Consensus 196 ~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~-~yd~~~ 272 (400)
. -+++..+++. ...++.++..+++...+..-+.......... +++.+++++. ...++ .||..+
T Consensus 303 ~S~pdG~~la~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~-------~~~l~~~~d~~~ 368 (1045)
T 1k32_A 303 FSPLDGDLIAFVS------RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTR-------EGDFLGIYDYRT 368 (1045)
T ss_dssp EEECGGGCEEEEE------TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEET-------TEEEEEEEETTT
T ss_pred ecCCCCCEEEEEE------cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEEC-------CCceEEEEECCC
Confidence 2 2444333333 2457788887776555433222111111122 5554444433 24788 899988
Q ss_pred CceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCcc
Q psy2979 273 NQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEE 352 (400)
Q Consensus 273 ~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~ 352 (400)
.....+.. ...........-+++.++++.. ...++.+|..+++-..+..-........+..-+|+.+++++.+
T Consensus 369 ~~~~~l~~-~~~~~~~~~~SpDG~~la~~~~------~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~ 441 (1045)
T 1k32_A 369 GKAEKFEE-NLGNVFAMGVDRNGKFAVVAND------RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPL 441 (1045)
T ss_dssp CCEEECCC-CCCSEEEEEECTTSSEEEEEET------TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEE
T ss_pred CCceEecC-CccceeeeEECCCCCEEEEECC------CCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecC
Confidence 77666541 1111222222226666666654 4589999999887666542211111111222266655555441
Q ss_pred C----CCCCCCeEEEEECCCCcEEEe
Q psy2979 353 G----WDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 353 ~----~~~~~~~v~~yd~~~~~W~~~ 374 (400)
. .......+++||..+++...+
T Consensus 442 ~~~~~~~~~~~~i~l~d~~~g~~~~l 467 (1045)
T 1k32_A 442 KHGETDGYVMQAIHVYDMEGRKIFAA 467 (1045)
T ss_dssp CSSTTCSCCEEEEEEEETTTTEEEEC
T ss_pred ccccccCCCCCeEEEEECCCCcEEEe
Confidence 1 012245899999998875554
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=93.66 E-value=3.5 Score=36.37 Aligned_cols=148 Identities=13% Similarity=0.137 Sum_probs=78.2
Q ss_pred EEEEe-ecCEEEEEECCCCCeEEccCCCC------c-ceeeeEEE----ECCEEEEEccc--C----CC--CCCCeEEEE
Q psy2979 160 IYCLD-IVDIVYVAASMHKILHSLGSLKF------D-FDVSGIAM----LDGFVYAVGGW--D----GS--CRLDSVERY 219 (400)
Q Consensus 160 iyv~~-~~~~~~~yd~~~~~w~~~~~~~~------~-r~~~~~~~----~~~~iyv~GG~--~----~~--~~~~~v~~y 219 (400)
+|+.. ....+..+||..+.-..+ ..+. + ....++.. -+++|+++.-. . +. .....+.+|
T Consensus 27 ~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~ 105 (334)
T 2p9w_A 27 FYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSF 105 (334)
T ss_dssp EEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEE
T ss_pred EEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEE
Confidence 55553 456788889886654444 2221 1 22345555 25688886211 0 11 124679999
Q ss_pred eCC---CC--ceEE-ccCCCCc-------ccc-c-EEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCc---eeeccC
Q psy2979 220 DPT---KN--EWSY-IEPMKLA-------VTS-P-AVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ---WQDLAP 280 (400)
Q Consensus 220 d~~---~~--~W~~-~~~l~~~-------~~~-~-~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~---W~~~~~ 280 (400)
|+. ++ .|.. ++..... ... . .+++ -+|.+||.+.. . ...|++++|.... |-.-.+
T Consensus 106 Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~---~---~~~I~rV~pdG~~~~~~~~~~~ 179 (334)
T 2p9w_A 106 NLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFAL---G---MPAIARVSADGKTVSTFAWESG 179 (334)
T ss_dssp ESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEE---S---SCEEEEECTTSCCEEEEEECCC
T ss_pred cCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCC---C---CCeEEEEeCCCCEEeeeeecCC
Confidence 988 44 3432 1111111 211 1 2222 37899998766 2 1479999997653 543222
Q ss_pred CCCCce-eeeEEEE-CC-eEEEEcCcCCCCCCCCeEEEEECCCC
Q psy2979 281 MLIPRS-GAAICAL-DS-CIYVLGGWHASTENTNRVECYHIAEN 321 (400)
Q Consensus 281 ~~~~r~-~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~~~ 321 (400)
....+. ..+++.. ++ .|++..+ ...+++||+.+.
T Consensus 180 ~~~~~~G~nGIv~~pdg~~Liv~~~-------~g~L~~fD~~~p 216 (334)
T 2p9w_A 180 NGGQRPGYSGITFDPHSNKLIAFGG-------PRALTAFDVSKP 216 (334)
T ss_dssp CSSSCCSCSEEEEETTTTEEEEESS-------SSSEEEEECSSS
T ss_pred CcccccCcceEEEeCCCCEEEEEcC-------CCeEEEEcCCCC
Confidence 223333 3345555 45 4555443 346899998743
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=93.62 E-value=3.2 Score=35.86 Aligned_cols=146 Identities=11% Similarity=0.162 Sum_probs=73.1
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCC-------ceEEccCCCCcccccEEEEe--C--CEEEEEcCccccCCCCcceEEE
Q psy2979 199 GFVYAVGGWDGSCRLDSVERYDPTKN-------EWSYIEPMKLAVTSPAVVAH--E--GMLYVTGGAILEDGDGIEQVQR 267 (400)
Q Consensus 199 ~~iyv~GG~~~~~~~~~v~~yd~~~~-------~W~~~~~l~~~~~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~v~~ 267 (400)
+.+++.|+.++ .+..||..++ .|..+..+............ + +..++.|+. ++ .+..
T Consensus 71 ~~~l~s~~~dg-----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg----~v~i 138 (351)
T 3f3f_A 71 GRIIASASYDK-----TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGN---DG----ILRL 138 (351)
T ss_dssp CSEEEEEETTS-----CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET---TC----EEEE
T ss_pred CCEEEEEcCCC-----eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecC---CC----cEEE
Confidence 66777777653 4777777664 23333332222222222222 3 667777776 43 7888
Q ss_pred EeCCCCc----eeec---c--CCC---CCceeeeEEEE----CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcC
Q psy2979 268 YNPKVNQ----WQDL---A--PML---IPRSGAAICAL----DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKE 331 (400)
Q Consensus 268 yd~~~~~----W~~~---~--~~~---~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 331 (400)
||..+.+ |... . ... ......++... ++..+++|+. ...+..++...+....+..++.
T Consensus 139 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 212 (351)
T 3f3f_A 139 YDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSAL------EQAIIYQRGKDGKLHVAAKLPG 212 (351)
T ss_dssp EECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEET------TEEEEEEECTTSCEEEEEECCC
T ss_pred ecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecC------CCcEEEEccCCCceeeeeecCC
Confidence 9876554 2211 0 111 11111112221 2667777765 3455566666666655444443
Q ss_pred ccCcceEEEE--CC----EEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 332 KRYRPGIAVI--DG----KIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 332 ~~~~~~~~~~--~~----~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
.......+.+ ++ ++++.|+. + ..|.+||..+
T Consensus 213 h~~~i~~~~~~p~~~~~~~~l~s~~~-d-----g~i~iwd~~~ 249 (351)
T 3f3f_A 213 HKSLIRSISWAPSIGRWYQLIATGCK-D-----GRIRIFKITE 249 (351)
T ss_dssp CCSCEEEEEECCCSSCSSEEEEEEET-T-----SCEEEEEEEE
T ss_pred CCcceeEEEECCCCCCcceEEEEEcC-C-----CeEEEEeCCC
Confidence 2222233333 44 77777776 3 3466777654
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=93.46 E-value=1.8 Score=37.78 Aligned_cols=143 Identities=15% Similarity=0.187 Sum_probs=74.1
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEE-ccCCCCcccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCce
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSY-IEPMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQW 275 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W 275 (400)
++..++.|+.+ ..+..||..+++-.. +..-..+. .+++. -++.+++.|+. ++ .+..||.....-
T Consensus 76 dg~~l~s~s~D-----~~v~~wd~~~~~~~~~~~~h~~~v--~~~~~~~~~~~l~s~s~---D~----~i~vwd~~~~~~ 141 (319)
T 3frx_A 76 DGAYALSASWD-----KTLRLWDVATGETYQRFVGHKSDV--MSVDIDKKASMIISGSR---DK----TIKVWTIKGQCL 141 (319)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTTEEEEEEECCSSCE--EEEEECTTSCEEEEEET---TS----CEEEEETTSCEE
T ss_pred CCCEEEEEeCC-----CEEEEEECCCCCeeEEEccCCCcE--EEEEEcCCCCEEEEEeC---CC----eEEEEECCCCeE
Confidence 45666667655 468889998875322 21111111 11222 25677778877 54 688888765443
Q ss_pred eeccCCCCCceeeeEEEE-------CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEE
Q psy2979 276 QDLAPMLIPRSGAAICAL-------DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIY 346 (400)
Q Consensus 276 ~~~~~~~~~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~ly 346 (400)
..+..-... -..+... ++..++.|+. ...+..||..+.+-... +.........+.+ +++++
T Consensus 142 ~~~~~h~~~--v~~~~~~~~~~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~sp~g~~l 211 (319)
T 3frx_A 142 ATLLGHNDW--VSQVRVVPNEKADDDSVTIISAGN------DKMVKAWNLNQFQIEAD--FIGHNSNINTLTASPDGTLI 211 (319)
T ss_dssp EEECCCSSC--EEEEEECCC------CCEEEEEET------TSCEEEEETTTTEEEEE--ECCCCSCEEEEEECTTSSEE
T ss_pred EEEeccCCc--EEEEEEccCCCCCCCccEEEEEeC------CCEEEEEECCcchhhee--ecCCCCcEEEEEEcCCCCEE
Confidence 332211111 1111111 2335666665 45788899877654321 1111111122233 67777
Q ss_pred EEcCccCCCCCCCeEEEEECCCCc
Q psy2979 347 VLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 347 v~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
+.|+. + ..|.+||..+.+
T Consensus 212 ~s~~~-d-----g~i~iwd~~~~~ 229 (319)
T 3frx_A 212 ASAGK-D-----GEIMLWNLAAKK 229 (319)
T ss_dssp EEEET-T-----CEEEEEETTTTE
T ss_pred EEEeC-C-----CeEEEEECCCCc
Confidence 77776 2 468888887764
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=93.24 E-value=4.4 Score=36.29 Aligned_cols=180 Identities=10% Similarity=0.075 Sum_probs=93.1
Q ss_pred eecCEEEEEECCCCCeEEccC--CCCcc--eeeeEEE--ECCEEEEEcccCCCCCCCeEEEEeCCCC--ceEEccCCCCc
Q psy2979 164 DIVDIVYVAASMHKILHSLGS--LKFDF--DVSGIAM--LDGFVYAVGGWDGSCRLDSVERYDPTKN--EWSYIEPMKLA 235 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~--~~~~r--~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~l~~~ 235 (400)
.....+..+|..+++-...-. .+... .-.++.. .++.+++.|+.++ .+..||+... .-..+..-..
T Consensus 177 s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~-----~v~~wd~~~~~~~~~~~~~h~~- 250 (380)
T 3iz6_a 177 SGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDT-----TVRLWDLRITSRAVRTYHGHEG- 250 (380)
T ss_dssp CTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTS-----CEEEEETTTTCCCCEEECCCSS-
T ss_pred CCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCC-----eEEEEECCCCCcceEEECCcCC-
Confidence 344567788888776433211 11111 1112222 2567888888663 5888887632 1111111111
Q ss_pred ccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCC-----Cc--eeeeEEEECCeEEEEcCcCCCC
Q psy2979 236 VTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLI-----PR--SGAAICALDSCIYVLGGWHAST 307 (400)
Q Consensus 236 ~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-----~r--~~~~~~~~~~~iyv~GG~~~~~ 307 (400)
.-.+++. -++..++.|+. |+ .+..||..+..-...-.... .. ....+...++.+++.|+.
T Consensus 251 -~v~~v~~~p~~~~l~s~s~---D~----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~---- 318 (380)
T 3iz6_a 251 -DINSVKFFPDGQRFGTGSD---DG----TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS---- 318 (380)
T ss_dssp -CCCEEEECTTSSEEEEECS---SS----CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT----
T ss_pred -CeEEEEEecCCCeEEEEcC---CC----eEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEEC----
Confidence 1112222 36778888887 55 68889988765332211110 00 111222337787788766
Q ss_pred CCCCeEEEEECCCCeEEE-ccCCcCccCc-ceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 308 ENTNRVECYHIAENTWEY-KSPMKEKRYR-PGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 308 ~~~~~v~~yd~~~~~W~~-~~~~~~~~~~-~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
...+..||..+.+-.. +..+...+.. -.++.+ +++.++.|+. + ..|.+||....
T Consensus 319 --dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~-D-----~~i~iW~~~~~ 376 (380)
T 3iz6_a 319 --NGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSW-D-----KNLKIWAFSGH 376 (380)
T ss_dssp --TSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECT-T-----SCEEEEECCSS
T ss_pred --CCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeC-C-----CCEEEEecCCC
Confidence 4579999987766432 3222222221 223333 6788888887 3 35677776653
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=93.20 E-value=1.5 Score=42.27 Aligned_cols=118 Identities=11% Similarity=0.141 Sum_probs=70.3
Q ss_pred EEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCc--eeeccCCCCCc------eeeeEEEECCeEEEEcCcCCCCCCCC
Q psy2979 240 AVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ--WQDLAPMLIPR------SGAAICALDSCIYVLGGWHASTENTN 311 (400)
Q Consensus 240 ~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r------~~~~~~~~~~~iyv~GG~~~~~~~~~ 311 (400)
+-++.++.+|+.... ..++++|..+.+ |+.-...+... ...+.+..+++||+... ..
T Consensus 63 ~P~v~~g~vyv~~~~--------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~-------dg 127 (582)
T 1flg_A 63 QAIVSDGVIYVTASY--------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL-------DA 127 (582)
T ss_dssp CCEEETTEEEEEETT--------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET-------TT
T ss_pred ccEEECCEEEEEcCC--------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC-------CC
Confidence 345689999998764 248999987655 88754333210 11334567889988643 35
Q ss_pred eEEEEECCCCe--EEEccCCcCcc--CcceEEEECC------EEEEEcCccCCCCCCCeEEEEECCCCc--EEE
Q psy2979 312 RVECYHIAENT--WEYKSPMKEKR--YRPGIAVIDG------KIYVLGGEEGWDGYHDSIECYDVDNDS--WEI 373 (400)
Q Consensus 312 ~v~~yd~~~~~--W~~~~~~~~~~--~~~~~~~~~~------~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~ 373 (400)
.+.++|..+++ |+.-...+... ...+-++.++ .||+-... ........++.||+++++ |+.
T Consensus 128 ~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~-~e~~~~g~v~alD~~tG~~~W~~ 200 (582)
T 1flg_A 128 SVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSG-DEFGVVGRLFARDPDTGEEIWMR 200 (582)
T ss_dssp EEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBC-GGGCCBCEEEEECTTTCCEEEEE
T ss_pred EEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccc-cccCCCCEEEEEECCCCCEEeec
Confidence 79999998875 88643222111 1122234455 66653221 111234679999998875 864
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=93.16 E-value=6.5 Score=37.95 Aligned_cols=62 Identities=16% Similarity=0.232 Sum_probs=37.3
Q ss_pred CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 294 DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 294 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
++++++.|+. ...+..||..++....+.. .........+.+ +++.++.|+. + ..|..||..+
T Consensus 459 dg~~lasgs~------D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~-d-----~~v~~w~~~~ 522 (611)
T 1nr0_A 459 DKQFVAVGGQ------DSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQ-S-----RKVIPYSVAN 522 (611)
T ss_dssp TSCEEEEEET------TSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEET-T-----SCEEEEEGGG
T ss_pred CCCEEEEeCC------CCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcC-C-----CCEEEEEcCC
Confidence 6778888876 4578889888776644332 111111223333 6777777765 2 3577888765
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=93.12 E-value=4.6 Score=36.09 Aligned_cols=86 Identities=9% Similarity=0.148 Sum_probs=51.0
Q ss_pred CCeEEEEcCcCC-----CCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEEC
Q psy2979 294 DSCIYVLGGWHA-----STENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDV 366 (400)
Q Consensus 294 ~~~iyv~GG~~~-----~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~ 366 (400)
++++|+....+. ... ..+++.+|+.+.+ .+..++.+. ..+++.- +..||+.++ +.|.+||+
T Consensus 265 g~~lyv~~~~~~~~~~~~~~-~~~v~viD~~t~~--~v~~i~~~~-p~~ia~spdg~~l~v~n~--------~~v~v~D~ 332 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFP-AAEIWVMDTKTKQ--RVARIPGRD-ALSMTIDQQRNLMLTLDG--------GNVNVYDI 332 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCC-CSEEEEEETTTTE--EEEEEECTT-CCEEEEETTTTEEEEECS--------SCEEEEEC
T ss_pred CCeEEEEEccCCCcccccCC-CceEEEEECCCCc--EEEEEecCC-eeEEEECCCCCEEEEeCC--------CeEEEEEC
Confidence 478998753111 112 4689999998886 344445444 3344333 445665442 57899998
Q ss_pred CCCcEEEecCC-CCCCCceeeEEEcc
Q psy2979 367 DNDSWEIMSHL-PSARSWLGCVPLQI 391 (400)
Q Consensus 367 ~~~~W~~~~~~-~~~r~~~~~~~~~~ 391 (400)
++.+-+.+..+ +.+..-..+++..+
T Consensus 333 ~t~~l~~~~~i~~~G~~P~~~~~~p~ 358 (361)
T 2oiz_A 333 SQPEPKLLRTIEGAAEASLQVQFHPV 358 (361)
T ss_dssp SSSSCEEEEEETTSCSSEEEEEECCC
T ss_pred CCCcceeeEEeccCCCCcEEEEecCC
Confidence 88644666664 45555556655443
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=93.00 E-value=4.8 Score=35.97 Aligned_cols=54 Identities=17% Similarity=0.178 Sum_probs=34.5
Q ss_pred CCEEEEEcCccC----CCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEccccccccc
Q psy2979 342 DGKIYVLGGEEG----WDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQIHKSQFVD 398 (400)
Q Consensus 342 ~~~lyv~GG~~~----~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~ 398 (400)
++++|+....+. .....+.|+++|.++. +.+..++.+. -.++++-.+..++++.
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~--~~v~~i~~~~-p~~ia~spdg~~l~v~ 322 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK--QRVARIPGRD-ALSMTIDQQRNLMLTL 322 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTTT--EEEEEEECTT-CCEEEEETTTTEEEEE
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCCC--cEEEEEecCC-eeEEEECCCCCEEEEe
Confidence 488999753101 1112468999999887 4555666666 6777777666666654
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=92.91 E-value=5.1 Score=36.07 Aligned_cols=261 Identities=6% Similarity=-0.143 Sum_probs=119.7
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEEee----------cCEEEEEECCCCCe
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCLDI----------VDIVYVAASMHKIL 179 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~~----------~~~~~~yd~~~~~w 179 (400)
..+|+..+...... ..+.+||+.+++-. ..+|.....+-...-+++.+|+... .+.+..||+.+.+-
T Consensus 33 ~~~yv~~~~~~~~~-~~v~v~D~~t~~~~--~~i~~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~ 109 (373)
T 2mad_H 33 RRSYINLPAHHSAI-IQQWVLDAGSGSIL--GHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP 109 (373)
T ss_pred CEEEEeCCcccCCc-cEEEEEECCCCeEE--EEecCCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcE
Confidence 46777653111111 17899999887643 3444333332233335554888732 45688999987653
Q ss_pred EEccCCC-Ccc-------eeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEE
Q psy2979 180 HSLGSLK-FDF-------DVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVT 251 (400)
Q Consensus 180 ~~~~~~~-~~r-------~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~ 251 (400)
...-+++ .+| ......--++.+|+..-. ..+++..+| .+++-... -++.+.. ......++..|+.
T Consensus 110 ~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~----~~~~v~viD-~t~~~~~~-~i~~~~~-~~~~~~~~~~~~~ 182 (373)
T 2mad_H 110 IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA----AGPAVGLVV-QGGSSDDQ-LLSSPTC-YHIHPGAPSTFYL 182 (373)
T ss_pred EEEEECCCccccccCCCccceEECCCCCEEEEEecC----CCCeEEEEE-CCCCEEeE-EcCCCce-EEEEeCCCceEEE
Confidence 3211121 111 112222225578876321 135789999 88764332 0332221 1111223344443
Q ss_pred cCccccCCCCcceEEEEeCCCCcee-ecc-----CCCCCceeeeE-EEECCeEEEEcCcCCCCCCCCeEEEEECCCCe--
Q psy2979 252 GGAILEDGDGIEQVQRYNPKVNQWQ-DLA-----PMLIPRSGAAI-CALDSCIYVLGGWHASTENTNRVECYHIAENT-- 322 (400)
Q Consensus 252 GG~~~~~~~~~~~v~~yd~~~~~W~-~~~-----~~~~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~-- 322 (400)
-.. ++ .+..+|. +.+-. ... ..+.+...+.. ...++++|+.. . ...++..|..++.
T Consensus 183 ~~~---dg----~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~------~~~v~vid~~~~~~~ 247 (373)
T 2mad_H 183 LCA---QG----GLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-Y------SGKILQADISAAGAT 247 (373)
T ss_pred EcC---CC----CEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-C------CceEEEEeccCCcce
Confidence 222 22 4555665 33322 110 11122212211 22245555544 2 3467777775543
Q ss_pred ----EEEccCC--cCc--cCcceEEEE---CCEEEEEcCccC---CCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEE
Q psy2979 323 ----WEYKSPM--KEK--RYRPGIAVI---DGKIYVLGGEEG---WDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVP 388 (400)
Q Consensus 323 ----W~~~~~~--~~~--~~~~~~~~~---~~~lyv~GG~~~---~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~ 388 (400)
|...... ... ..+.....+ ++++|+...... .....+.|+++|..+. +.+..++.+..-+++++
T Consensus 248 v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~--~vv~~i~~g~~p~~i~~ 325 (373)
T 2mad_H 248 NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG--QTSSQISLGHDVDAISV 325 (373)
T ss_pred EeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC--EEEEEEECCCCcCeEEE
Confidence 3221110 000 011111222 578999753201 1123468999998775 44444555555566666
Q ss_pred Ecccc-cccc
Q psy2979 389 LQIHK-SQFV 397 (400)
Q Consensus 389 ~~~~~-~~~~ 397 (400)
-.+.. .+++
T Consensus 326 s~Dg~~~l~v 335 (373)
T 2mad_H 326 AQDGGPDLYA 335 (373)
T ss_pred CCCCCeEEEE
Confidence 65544 3443
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=92.77 E-value=10 Score=39.30 Aligned_cols=114 Identities=8% Similarity=-0.050 Sum_probs=61.7
Q ss_pred CCeEEEEEeecCEEE-EEECCCCCeEEccCCCCcceeeeEEE-ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCC
Q psy2979 156 GRNTIYCLDIVDIVY-VAASMHKILHSLGSLKFDFDVSGIAM-LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMK 233 (400)
Q Consensus 156 ~~~~iyv~~~~~~~~-~yd~~~~~w~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~ 233 (400)
++..++.......++ .+|..+++...+. ........++. -+++.+++++.. ..+..+|+.+++-..+..-.
T Consensus 347 dg~~l~~~s~~~~l~~~~d~~~~~~~~l~--~~~~~~~~~~~SpDG~~la~~~~~-----~~v~~~d~~tg~~~~~~~~~ 419 (1045)
T 1k32_A 347 TKVAFIHGTREGDFLGIYDYRTGKAEKFE--ENLGNVFAMGVDRNGKFAVVANDR-----FEIMTVDLETGKPTVIERSR 419 (1045)
T ss_dssp SEEEEEEEETTEEEEEEEETTTCCEEECC--CCCCSEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEEEECS
T ss_pred CCCeEEEEECCCceEEEEECCCCCceEec--CCccceeeeEECCCCCEEEEECCC-----CeEEEEECCCCceEEeccCC
Confidence 444244433345788 8898887766554 11111122222 255555555433 47899999988776654222
Q ss_pred CcccccEEEEeCCEEEEEcCccccCC------CCcceEEEEeCCCCceeecc
Q psy2979 234 LAVTSPAVVAHEGMLYVTGGAILEDG------DGIEQVQRYNPKVNQWQDLA 279 (400)
Q Consensus 234 ~~~~~~~~~~~~~~iyv~GG~~~~~~------~~~~~v~~yd~~~~~W~~~~ 279 (400)
.......+..-+++..++++. ++ .....++.||..+.+...+.
T Consensus 420 ~~~v~~~~~SpDG~~la~~~~---~~~~~~~~~~~~~i~l~d~~~g~~~~l~ 468 (1045)
T 1k32_A 420 EAMITDFTISDNSRFIAYGFP---LKHGETDGYVMQAIHVYDMEGRKIFAAT 468 (1045)
T ss_dssp SSCCCCEEECTTSCEEEEEEE---ECSSTTCSCCEEEEEEEETTTTEEEECS
T ss_pred CCCccceEECCCCCeEEEEec---CccccccCCCCCeEEEEECCCCcEEEee
Confidence 222222233346665555544 21 11458999999887755554
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=92.75 E-value=6.8 Score=37.12 Aligned_cols=201 Identities=12% Similarity=0.082 Sum_probs=97.4
Q ss_pred eecCEEEEEECCCCCeEEccCCCCcceeeeEEE-ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEE
Q psy2979 164 DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAM-LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVV 242 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~ 242 (400)
.....+..+|........+..-..+ -.+++. -+++.++.|+.+ ..+..||.....-..+.....+. .+++
T Consensus 363 ~~dg~v~~~~~~~~~~~~~~~~~~~--v~~~~~s~dg~~l~~~~~d-----~~v~~~~~~~~~~~~~~~~~~~v--~~~~ 433 (577)
T 2ymu_A 363 SDDKTVKLWNRNGQLLQTLTGHSSS--VRGVAFSPDGQTIASASDD-----KTVKLWNRNGQLLQTLTGHSSSV--WGVA 433 (577)
T ss_dssp ETTSEEEEEETTCCEEEEEECCSSC--EEEEEECTTSSCEEEEETT-----SEEEEECTTCCEEEEEECCSSCE--EEEE
T ss_pred eCCCEEEEEcCCCCEEEEecCCCCC--eEEEEECCCCCEEEEEeCC-----CEEEEEeCCCCEEEEecCCCCCe--EEEE
Confidence 4445677777544333322221111 111121 255666666654 35778886544333332222111 1122
Q ss_pred -EeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEE-EECCeEEEEcCcCCCCCCCCeEEEEECCC
Q psy2979 243 -AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAIC-ALDSCIYVLGGWHASTENTNRVECYHIAE 320 (400)
Q Consensus 243 -~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~v~~yd~~~ 320 (400)
.-+++.++.++. ++ .+..||.....-..+..-..+ -.+++ .-++++++.|+. ...+..||...
T Consensus 434 ~s~d~~~l~~~~~---d~----~v~~w~~~~~~~~~~~~~~~~--v~~~~~spd~~~las~~~------d~~i~iw~~~~ 498 (577)
T 2ymu_A 434 FSPDDQTIASASD---DK----TVKLWNRNGQLLQTLTGHSSS--VRGVAFSPDGQTIASASD------DKTVKLWNRNG 498 (577)
T ss_dssp ECTTSSEEEEEET---TS----EEEEEETTSCEEEEEECCSSC--EEEEEECTTSCEEEEEET------TSEEEEEETTS
T ss_pred ECCCCCEEEEEcC---CC----EEEEEECCCCEEEEEcCCCCC--EEEEEEcCCCCEEEEEeC------CCEEEEEcCCC
Confidence 236677777776 43 688888765544443322211 11222 226777777765 45788888655
Q ss_pred CeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEccccccccc
Q psy2979 321 NTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQIHKSQFVD 398 (400)
Q Consensus 321 ~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~ 398 (400)
..-..+.... .....+.+ ++++++.|+. + ..|.+||........+.. ....-.++++..+..+++.+
T Consensus 499 ~~~~~~~~h~---~~v~~l~~s~dg~~l~s~~~-d-----g~v~lwd~~~~~~~~~~~--h~~~v~~~~fs~dg~~l~s~ 567 (577)
T 2ymu_A 499 QLLQTLTGHS---SSVRGVAFSPDGQTIASASD-D-----KTVKLWNRNGQLLQTLTG--HSSSVWGVAFSPDGQTIASA 567 (577)
T ss_dssp CEEEEEECCS---SCEEEEEECTTSSCEEEEET-T-----SEEEEECTTSCEEEEEEC--CSSCEEEEEECTTSSCEEEE
T ss_pred CEEEEEeCCC---CCEEEEEEcCCCCEEEEEEC-c-----CEEEEEeCCCCEEEEEcC--CCCCEEEEEEcCCCCEEEEE
Confidence 4333332211 11122233 6777777776 2 368888875544443322 11222345555565665544
Q ss_pred C
Q psy2979 399 K 399 (400)
Q Consensus 399 ~ 399 (400)
|
T Consensus 568 ~ 568 (577)
T 2ymu_A 568 S 568 (577)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=92.74 E-value=0.86 Score=45.17 Aligned_cols=197 Identities=11% Similarity=0.034 Sum_probs=101.7
Q ss_pred CEEEEEECCCCCeEEccCCCCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCC----ceEEccCCCCcc-ccc
Q psy2979 167 DIVYVAASMHKILHSLGSLKFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKN----EWSYIEPMKLAV-TSP 239 (400)
Q Consensus 167 ~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~----~W~~~~~l~~~~-~~~ 239 (400)
..+..+++.+.....+... ...-.+++.. ++.||+.--. ...+.++++.+. .-..+ +.... .-.
T Consensus 386 ~~I~~id~~~~~~~~~~~~--~~~p~gla~d~~~~~Ly~sD~~-----~~~I~~~~~~g~~~~~~~~~~--i~~~~~~P~ 456 (699)
T 1n7d_A 386 HEVRKMTLDRSEYTSLIPN--LRNVVALDTEVASNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTV--ISRDIQAPD 456 (699)
T ss_dssp TC-CEECTTSCCEECCSCC--CTTCCCCEEETTTTEEEECCTT-----TTSBEEEESCCCCC-CCCCCB--CCSCC--CC
T ss_pred cceEEEeCCCCcceeeecc--CcceEEEccccccCeEEEEecC-----CCeEEEEecCCCCCCcceEEE--EeCCCCCcc
Confidence 4566777777666544322 1222334443 6789986322 246888888751 11111 11111 112
Q ss_pred EEEE--eCCEEEEEcCccccCCCCcceEEEEeCCCCceeecc--CCCCCceeeeEEE--ECCeEEEEcCcCCCCCCCCeE
Q psy2979 240 AVVA--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLA--PMLIPRSGAAICA--LDSCIYVLGGWHASTENTNRV 313 (400)
Q Consensus 240 ~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v 313 (400)
++++ .++.||+.-.. ...|.++++....-..+. .+..|+ ++++ .++.||+..-. . ...+
T Consensus 457 glavD~~~g~LY~tD~~-------~~~I~v~d~dg~~~~~l~~~~~~~P~---giavDp~~g~ly~td~~----~-~~~I 521 (699)
T 1n7d_A 457 GLAVDWIHSNIYWTDSV-------LGTVSVADTKGVKRKTLFREQGSKPR---AIVVDPVHGFMYWTDWG----T-PAKI 521 (699)
T ss_dssp CEECCCSSSBCEECCTT-------TSCEEEEBSSSCCEEEECCCSSCCCC---CEECCSSSSCCEECCCS----S-SCCE
T ss_pred eEEEEeeCCcEEEEecc-------CCeEEEEecCCCceEEEEeCCCCCcc---eEEEccCCCcEEEcccC----C-CCeE
Confidence 3333 47889987543 347899998776544442 233332 2333 26788876521 1 2578
Q ss_pred EEEECCCCeEEEccCCcCccCcceEEEE---CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCC-CCCCceeeEEE
Q psy2979 314 ECYHIAENTWEYKSPMKEKRYRPGIAVI---DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLP-SARSWLGCVPL 389 (400)
Q Consensus 314 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~r~~~~~~~~ 389 (400)
+++++....-..+... ....+...++ +++||+.-.. .+.|+++|+....-+.+...+ ....-.++++.
T Consensus 522 ~~~~~dG~~~~~l~~~--~l~~PnGlavd~~~~~LY~aD~~------~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd 593 (699)
T 1n7d_A 522 KKGGLNGVDIYSLVTE--NIQWPNGITLDLLSGRLYWVDSK------LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF 593 (699)
T ss_dssp EBCCSSSCCCCEESCS--SCSSCCCEEECTTTCCEEEEETT------TTEEEEECSSSSCCEEECCCSSSCSSCCCCEEE
T ss_pred EEEeCCCCCeeEEEeC--CCCCccEEEEeccCCEEEEEecC------CCeEEEEccCCCceEEEEecCCcCCCceEeEEE
Confidence 8888765433332211 1222333444 5789997643 367999998765444443221 11223556665
Q ss_pred cccccc
Q psy2979 390 QIHKSQ 395 (400)
Q Consensus 390 ~~~~~~ 395 (400)
++.+|+
T Consensus 594 ~~~lyw 599 (699)
T 1n7d_A 594 EDKVFW 599 (699)
T ss_dssp TTEEEE
T ss_pred CCEEEE
Confidence 554443
|
| >1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 | Back alignment and structure |
|---|
Probab=92.74 E-value=0.12 Score=36.84 Aligned_cols=44 Identities=34% Similarity=0.470 Sum_probs=36.0
Q ss_pred eEEEE-CCeEEehhhHHHhhcCcccccc---------ceeecCCCCHHHHHHHhh
Q psy2979 20 VTLCV-DGSKFPAHRVVLAASSPYFKVL---------ETIRLPQLSPYFLHDCVE 64 (400)
Q Consensus 20 v~l~~-~~~~~~~hr~vLaa~s~yf~~m---------~~vrl~~l~~~~l~~~i~ 64 (400)
|+|+. ||+.|..+|.+ |.+|.+++.| ..|.||.++...|...++
T Consensus 6 v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~e~~~~~Iplp~V~~~iL~kVie 59 (99)
T 1hv2_A 6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVE 59 (99)
T ss_dssp EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSSTTTCTTEEEETTSCHHHHHHHHH
T ss_pred EEEEecCCCEEEECHHH-HHHhHHHHHHHhcccccCCCceecCCcCHHHHHHHHH
Confidence 67777 99999999997 8999999877 368999999986665443
|
| >2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B | Back alignment and structure |
|---|
Probab=92.73 E-value=0.093 Score=37.21 Aligned_cols=43 Identities=23% Similarity=0.349 Sum_probs=35.1
Q ss_pred eEEEE-CCeEEehhhHHHhhcCcccccc------------ceeecCCCCHHHHHHHh
Q psy2979 20 VTLCV-DGSKFPAHRVVLAASSPYFKVL------------ETIRLPQLSPYFLHDCV 63 (400)
Q Consensus 20 v~l~~-~~~~~~~hr~vLaa~s~yf~~m------------~~vrl~~l~~~~l~~~i 63 (400)
|+|.. ||++|..+|.+ |.+|++++.| ..|.||.++...|...+
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVi 58 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVC 58 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHH
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHH
Confidence 56766 89999999997 8999999877 25889999998665543
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=92.71 E-value=8.3 Score=38.00 Aligned_cols=237 Identities=8% Similarity=-0.010 Sum_probs=117.9
Q ss_pred cceEEEEEcCCCceEEccCCcc---cc--eeeeEEEE-CCeEEEEE-eec----CEEEEEECCCCCeEEccCCCCcceee
Q psy2979 124 LRSVEGFCVKTKVWKTLSCLPF---AI--SKHGLVVS-GRNTIYCL-DIV----DIVYVAASMHKILHSLGSLKFDFDVS 192 (400)
Q Consensus 124 ~~~~~~yd~~~~~w~~~~~~~~---~~--~~~~~~~~-~~~~iyv~-~~~----~~~~~yd~~~~~w~~~~~~~~~r~~~ 192 (400)
...++..+...++|..+.+... .. ...+.+.. ++..|... ... ..++.+|..+++...... .... ..
T Consensus 97 ~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-~~~~-~~ 174 (710)
T 2xdw_A 97 QRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVK-FS 174 (710)
T ss_dssp SCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEEC-SC
T ss_pred EEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-cCcc-cc
Confidence 3456677666667765532221 11 11222333 44423222 211 178999999887765321 1111 12
Q ss_pred eEEEE-CC-EEEEEcccCCC-----------CCCCeEEEEeCCCCceE--EccCCC-CcccccEEE-EeCCEEEEEcCcc
Q psy2979 193 GIAML-DG-FVYAVGGWDGS-----------CRLDSVERYDPTKNEWS--YIEPMK-LAVTSPAVV-AHEGMLYVTGGAI 255 (400)
Q Consensus 193 ~~~~~-~~-~iyv~GG~~~~-----------~~~~~v~~yd~~~~~W~--~~~~l~-~~~~~~~~~-~~~~~iyv~GG~~ 255 (400)
+.+.. ++ .||.. ..... .....++.+++.+++.. .+-..+ .+....... .-+++..+++..
T Consensus 175 ~~~wspDg~~l~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~- 252 (710)
T 2xdw_A 175 CMAWTHDGKGMFYN-AYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR- 252 (710)
T ss_dssp CEEECTTSSEEEEE-ECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE-
T ss_pred eEEEEeCCCEEEEE-EECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEE-
Confidence 23333 44 44443 33222 22356888898887632 221212 122112222 234543333332
Q ss_pred ccCCCC-cceEEEEeCCC------C--ceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCC---eE
Q psy2979 256 LEDGDG-IEQVQRYNPKV------N--QWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAEN---TW 323 (400)
Q Consensus 256 ~~~~~~-~~~v~~yd~~~------~--~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~---~W 323 (400)
.+.. .+.++.+|..+ . .+..+..-..... .....-++.||+.+..+.. ...++.+|..+. .|
T Consensus 253 --~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~---~~~l~~~d~~~~~~~~~ 326 (710)
T 2xdw_A 253 --EGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEY-DYVTNEGTVFTFKTNRHSP---NYRLINIDFTDPEESKW 326 (710)
T ss_dssp --CSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCE-EEEEEETTEEEEEECTTCT---TCEEEEEETTSCCGGGC
T ss_pred --ccCCCccEEEEEECcccccccCCccceEEeeCCCCcEE-EEEeccCCEEEEEECCCCC---CCEEEEEeCCCCCcccc
Confidence 1111 35889999865 3 5776654322222 2222346778888754322 458999998876 48
Q ss_pred EEccCCcCccCcceEEEE-CCEEEEEcCccCCCCCCCeEEEEECCCCc-EEEe
Q psy2979 324 EYKSPMKEKRYRPGIAVI-DGKIYVLGGEEGWDGYHDSIECYDVDNDS-WEIM 374 (400)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~-W~~~ 374 (400)
+.+.+.........+... ++++++.... + ....++++|+.+++ .+.+
T Consensus 327 ~~l~~~~~~~~~~~~~~~~~~~lv~~~~~-~---g~~~l~~~~~~~g~~~~~l 375 (710)
T 2xdw_A 327 KVLVPEHEKDVLEWVACVRSNFLVLCYLH-D---VKNTLQLHDLATGALLKIF 375 (710)
T ss_dssp EEEECCCSSCEEEEEEEETTTEEEEEEEE-T---TEEEEEEEETTTCCEEEEE
T ss_pred eeccCCCCCCeEEEEEEEcCCEEEEEEEE-C---CEEEEEEEECCCCCEEEec
Confidence 776543221122234445 7788777654 2 23578999986654 4444
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=92.67 E-value=7.9 Score=37.67 Aligned_cols=197 Identities=14% Similarity=0.077 Sum_probs=114.4
Q ss_pred eecCEEEEEECCCCCeEEccCCCCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEE
Q psy2979 164 DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAV 241 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~ 241 (400)
.....+...|+.+..-...-+++.-+...+++.. ++.||+.--. ...+.++++.....+.+...... .-.++
T Consensus 12 s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~-----~~~I~r~~~~g~~~~~v~~~g~~-~P~Gl 85 (628)
T 4a0p_A 12 SRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDIS-----LKTISRAFMNGSALEHVVEFGLD-YPEGM 85 (628)
T ss_dssp EETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEECSSCS-CCCEE
T ss_pred EeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECC-----CCeEEEEECCCCCcEEEEeCCCC-CcceE
Confidence 3456677788876554433333322333444443 6899997432 35788999887666554332211 12244
Q ss_pred EE--eCCEEEEEcCccccCCCCcceEEEEeCCCCceeec--cCCCCCceeeeEEEE--CCeEEEEc-CcCCCCCCCCeEE
Q psy2979 242 VA--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDL--APMLIPRSGAAICAL--DSCIYVLG-GWHASTENTNRVE 314 (400)
Q Consensus 242 ~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~--~~~~~~r~~~~~~~~--~~~iyv~G-G~~~~~~~~~~v~ 314 (400)
++ .+++||+.-.. ...++++++....-+.+ ..+..|+ ++++- ++.||+.. |. ...++
T Consensus 86 AvD~~~~~LY~tD~~-------~~~I~v~~~dG~~~~~l~~~~l~~P~---~iavdp~~G~lY~tD~g~------~~~I~ 149 (628)
T 4a0p_A 86 AVDWLGKNLYWADTG-------TNRIEVSKLDGQHRQVLVWKDLDSPR---ALALDPAEGFMYWTEWGG------KPKID 149 (628)
T ss_dssp EEETTTTEEEEEETT-------TTEEEEEETTSTTCEEEECSSCCCEE---EEEEETTTTEEEEEECSS------SCEEE
T ss_pred EEEeCCCEEEEEECC-------CCEEEEEecCCCcEEEEEeCCCCCcc---cEEEccCCCeEEEeCCCC------CCEEE
Confidence 44 57999998654 35899999866543332 2344442 34444 68999986 32 45899
Q ss_pred EEECCCCeEEEccCCcCccCcceEEEE---CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEec-CCCCCCCceeeEEEc
Q psy2979 315 CYHIAENTWEYKSPMKEKRYRPGIAVI---DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMS-HLPSARSWLGCVPLQ 390 (400)
Q Consensus 315 ~yd~~~~~W~~~~~~~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~r~~~~~~~~~ 390 (400)
+.++....-+.+.. ....+...++ +++||+.-.. .+.|+++|+....=+.+. .++.| .++++.+
T Consensus 150 r~~~dG~~~~~l~~---~~~~P~GlalD~~~~~LY~aD~~------~~~I~~~d~dG~~~~v~~~~l~~P---~glav~~ 217 (628)
T 4a0p_A 150 RAAMDGSERTTLVP---NVGRANGLTIDYAKRRLYWTDLD------TNLIESSNMLGLNREVIADDLPHP---FGLTQYQ 217 (628)
T ss_dssp EEETTSCSCEEEEC---SCSSEEEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEEECCSCE---EEEEEET
T ss_pred EEeCCCCceEEEEC---CCCCcceEEEccccCEEEEEECC------CCEEEEEcCCCCceEEeeccCCCc---eEEEEEC
Confidence 99987665444432 2233344444 5899998543 467999998664333332 23333 5677666
Q ss_pred cccc
Q psy2979 391 IHKS 394 (400)
Q Consensus 391 ~~~~ 394 (400)
+..|
T Consensus 218 ~~ly 221 (628)
T 4a0p_A 218 DYIY 221 (628)
T ss_dssp TEEE
T ss_pred CEEE
Confidence 5444
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=92.50 E-value=3.5 Score=37.72 Aligned_cols=143 Identities=10% Similarity=0.076 Sum_probs=68.7
Q ss_pred EEEEcccCCCCCCCeEEEEeCCCC---ceEEc--cCCC-CcccccEEEEe--CCEEEEEcCccccCCCCcceEEEEeCCC
Q psy2979 201 VYAVGGWDGSCRLDSVERYDPTKN---EWSYI--EPMK-LAVTSPAVVAH--EGMLYVTGGAILEDGDGIEQVQRYNPKV 272 (400)
Q Consensus 201 iyv~GG~~~~~~~~~v~~yd~~~~---~W~~~--~~l~-~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~ 272 (400)
+++.|+.+ ..+..||+.+. .+... ..+. ....-.+++.. ++.+++.|+. + ..+..||..+
T Consensus 196 ~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~---d----g~i~i~d~~~ 263 (430)
T 2xyi_A 196 YLLSASDD-----HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD---D----QKLMIWDTRN 263 (430)
T ss_dssp EEEEECTT-----SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEET---T----SEEEEEETTC
T ss_pred eEEEEeCC-----CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeC---C----CeEEEEECCC
Confidence 66667655 35888888763 22211 1111 11111122222 5677777776 4 3799999876
Q ss_pred Cc-eeeccCCCCCceeeeEEEE--CC-eEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CC-EE
Q psy2979 273 NQ-WQDLAPMLIPRSGAAICAL--DS-CIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DG-KI 345 (400)
Q Consensus 273 ~~-W~~~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~-~l 345 (400)
.. ...+..+.........+.. ++ .+++.|+. ...+..||..+.. ..+..+.........+.. ++ .+
T Consensus 264 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~------dg~v~vwd~~~~~-~~~~~~~~h~~~v~~i~~sp~~~~~ 336 (430)
T 2xyi_A 264 NNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA------DKTVALWDLRNLK-LKLHSFESHKDEIFQVQWSPHNETI 336 (430)
T ss_dssp SCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEET------TSEEEEEETTCTT-SCSEEEECCSSCEEEEEECSSCTTE
T ss_pred CCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeC------CCeEEEEeCCCCC-CCeEEeecCCCCEEEEEECCCCCCE
Confidence 52 1111111111111222222 33 47888876 5679999987632 001111111111122233 33 57
Q ss_pred EEEcCccCCCCCCCeEEEEECCC
Q psy2979 346 YVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 346 yv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
++.|+. + ..|.+||...
T Consensus 337 l~s~~~-d-----~~i~iwd~~~ 353 (430)
T 2xyi_A 337 LASSGT-D-----RRLHVWDLSK 353 (430)
T ss_dssp EEEEET-T-----SCCEEEEGGG
T ss_pred EEEEeC-C-----CcEEEEeCCC
Confidence 777776 2 3567777765
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=92.48 E-value=5.1 Score=35.03 Aligned_cols=187 Identities=10% Similarity=-0.041 Sum_probs=90.9
Q ss_pred cCEEEEEECCCCCeEEccCCCCcceeeeEEE-ECC-EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE
Q psy2979 166 VDIVYVAASMHKILHSLGSLKFDFDVSGIAM-LDG-FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA 243 (400)
Q Consensus 166 ~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~ 243 (400)
...++.+|..+++-..+. . ...... -++ .|+.... .+......++.+|..+++...+...+. ....+-
T Consensus 42 ~~~l~~~d~~~~~~~~l~-----~-~~~~~~SpDg~~la~~~~-~~~~~~~~l~~~~~~~g~~~~l~~~~~---~~~~~w 111 (347)
T 2gop_A 42 ENTIVIENLKNNARRFIE-----N-ATMPRISPDGKKIAFMRA-NEEKKVSEIWVADLETLSSKKILEAKN---IRSLEW 111 (347)
T ss_dssp EEEEEEEETTTCCEEEEE-----S-CEEEEECTTSSEEEEEEE-ETTTTEEEEEEEETTTTEEEEEEEESE---EEEEEE
T ss_pred cceEEEEeCCCCceEEcc-----c-CCCeEECCCCCEEEEEEe-ccCCCcceEEEEECCCCceEEEEcCCC---ccceeE
Confidence 456888888877655541 1 111111 144 4444332 211123468889998887766654332 111221
Q ss_pred -eCCE-EEEEcCccc--------------cCC-----CCcceEEEEeCCCCce-eeccCCCCCceeeeEEEECCeEEEEc
Q psy2979 244 -HEGM-LYVTGGAIL--------------EDG-----DGIEQVQRYNPKVNQW-QDLAPMLIPRSGAAICALDSCIYVLG 301 (400)
Q Consensus 244 -~~~~-iyv~GG~~~--------------~~~-----~~~~~v~~yd~~~~~W-~~~~~~~~~r~~~~~~~~~~~iyv~G 301 (400)
-+++ |++...... .++ .....++.+|..+.+. ..+.. + .....+...+.+++.+
T Consensus 112 spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~---~~~~~~~spdg~~~~~ 187 (347)
T 2gop_A 112 NEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P---RFSSGIWHRDKIVVNV 187 (347)
T ss_dssp CTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E---TTCEEEEETTEEEEEE
T ss_pred CCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C---CcccccCCCCeEEEEE
Confidence 2444 444331100 000 0035789999988876 55544 2 2222333333355555
Q ss_pred CcCCCCC--C-CCeEEEEECCCCeEEEccCCcCccCcceEEEECCE-EEEEcCccCC--CCCCCeEEEEECCCCcEEEec
Q psy2979 302 GWHASTE--N-TNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGK-IYVLGGEEGW--DGYHDSIECYDVDNDSWEIMS 375 (400)
Q Consensus 302 G~~~~~~--~-~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-lyv~GG~~~~--~~~~~~v~~yd~~~~~W~~~~ 375 (400)
....... . ...++.+| ++++..+... .......-+|+ |+..+.. .. ......++.+| +++++.+.
T Consensus 188 ~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~----~~~~~~spdg~~l~~~~~~-~~~~~~~~~~l~~~d--~~~~~~l~ 258 (347)
T 2gop_A 188 PHREIIPQYFKFWDIYIWE--DGKEEKMFEK----VSFYAVDSDGERILLYGKP-EKKYMSEHNKLYIYD--GKEVMGIL 258 (347)
T ss_dssp ECCCSSCCSSCCEEEEEEE--TTEEEEEEEE----ESEEEEEECSSCEEEEECC-SSSCCCSSCEEEEEC--SSCEEESS
T ss_pred ecccccccccccccEEEeC--CCceEEeccC----cceeeECCCCCEEEEEEcc-ccCCccccceEEEEC--CCceEecc
Confidence 3322100 0 34788888 7777666432 11112244665 4444432 21 12346899999 66676653
|
| >1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A* | Back alignment and structure |
|---|
Probab=92.38 E-value=4.9 Score=37.24 Aligned_cols=148 Identities=11% Similarity=0.047 Sum_probs=82.2
Q ss_pred eeEEEECCeEEEEEeecCEEEEEECCCCCeEE--c----cCCCCcceeeeEEE--ECCEEEEEcccCCCCCCCeEEEEeC
Q psy2979 150 HGLVVSGRNTIYCLDIVDIVYVAASMHKILHS--L----GSLKFDFDVSGIAM--LDGFVYAVGGWDGSCRLDSVERYDP 221 (400)
Q Consensus 150 ~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~--~----~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~ 221 (400)
-+++...+. +|++.. +.+|+++.....+.. + +.+|.. --++.. .++++|++=| +.+|+|+.
T Consensus 266 DAi~~~~ge-~y~Fkg-~~~wr~~~~~~~~~p~~I~~~Wp~LP~~--iDAa~~~~~~g~~~fFKg-------~~~W~~~~ 334 (450)
T 1su3_A 266 DAITTIRGE-VMFFKD-RFYMRTNPFYPEVELNFISVFWPQLPNG--LEAAYEFADRDEVRFFKG-------NKYWAVQG 334 (450)
T ss_dssp SEEEEETTE-EEEEET-TEEEECCTTSSSCEEEEGGGTCTTSCSS--CCEEEEEGGGTEEEEEET-------TEEEEEET
T ss_pred ceEEecCCe-EEEEeC-CEEEEEcCCCCcccceehhHhccCCCCC--eeEEEEEcCCCeEEEEeC-------CEEEEecC
Confidence 456667888 998843 566777765433321 1 122221 112222 2689999977 56788774
Q ss_pred CCCc--e-EEcc---CCCCccccc-EEEEe--CCEEEEEcCccccCCCCcceEEEEeCCCCceee-----cc-CCC-CCc
Q psy2979 222 TKNE--W-SYIE---PMKLAVTSP-AVVAH--EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQD-----LA-PML-IPR 285 (400)
Q Consensus 222 ~~~~--W-~~~~---~l~~~~~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~-----~~-~~~-~~r 285 (400)
.+-. + ..+. .+|.....- ++... ++++|++-|. ..|+||..+.+-.. +. ..| .+.
T Consensus 335 ~~~~~gyP~~i~~~~g~P~~~~~IDAA~~~~~~~k~yfFkG~---------~yw~yd~~~~~~~~gYPk~I~~~fpgip~ 405 (450)
T 1su3_A 335 QNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVAN---------KYWRYDEYKRSMDPGYPKMIAHDFPGIGH 405 (450)
T ss_dssp TEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEETT---------EEEEEETTTTEECSSCSEEHHHHSTTSCS
T ss_pred CcccCCCceeeehhhcCCCCCCccceEEEEcCCCeEEEEeCC---------EEEEEeCCCccccCCCCcchhhcCCCCCC
Confidence 3210 0 1111 123211122 22222 6899999886 79999987544321 11 111 122
Q ss_pred eeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEE
Q psy2979 286 SGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEY 325 (400)
Q Consensus 286 ~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~ 325 (400)
.--+++..++++|++-|. ..|+||..+++=..
T Consensus 406 ~iDAA~~~~g~~YFFkg~--------~ywr~d~~~~~v~~ 437 (450)
T 1su3_A 406 KVDAVFMKDGFFYFFHGT--------RQYKFDPKTKRILT 437 (450)
T ss_dssp CCSEEEEETTEEEEEETT--------EEEEEETTTTEEEE
T ss_pred CccEEEEcCCeEEEEeCC--------EEEEEECCcceEec
Confidence 233445568999999864 78999998876543
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=92.29 E-value=5.2 Score=35.34 Aligned_cols=77 Identities=14% Similarity=0.191 Sum_probs=42.5
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCC-----CcccccEEEEe--CCEEEEEcCccccCCCCcceEEEEeC
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMK-----LAVTSPAVVAH--EGMLYVTGGAILEDGDGIEQVQRYNP 270 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~-----~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~ 270 (400)
+++||++.--........+.+||+.+++-...-.++ ....-..+++- ++.+|+..... .. ...+.+||+
T Consensus 77 ~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~--~~--~~~i~v~d~ 152 (343)
T 2qe8_A 77 NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAP--DD--KAALIRVDL 152 (343)
T ss_dssp SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCS--GG--GCEEEEEET
T ss_pred CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCcc--CC--CCeEEEEEC
Confidence 578999742100011357999999988743322222 11122344444 57999985310 00 357999998
Q ss_pred CCCc-eeec
Q psy2979 271 KVNQ-WQDL 278 (400)
Q Consensus 271 ~~~~-W~~~ 278 (400)
.+.+ |..+
T Consensus 153 ~~g~~~r~~ 161 (343)
T 2qe8_A 153 QTGLAARVL 161 (343)
T ss_dssp TTCCEEEEC
T ss_pred CCCCEEEEe
Confidence 7654 5544
|
| >3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata} | Back alignment and structure |
|---|
Probab=92.17 E-value=1.5 Score=36.50 Aligned_cols=99 Identities=12% Similarity=0.041 Sum_probs=60.2
Q ss_pred ECCEEEEEcccCCCCCCCeEEEEeCCC----CceEEc--------cCCCCc--ccccEEE-E--eCCEEEEEcCccccCC
Q psy2979 197 LDGFVYAVGGWDGSCRLDSVERYDPTK----NEWSYI--------EPMKLA--VTSPAVV-A--HEGMLYVTGGAILEDG 259 (400)
Q Consensus 197 ~~~~iyv~GG~~~~~~~~~v~~yd~~~----~~W~~~--------~~l~~~--~~~~~~~-~--~~~~iyv~GG~~~~~~ 259 (400)
.++++|++-| +.+++||..+ ++...- +.||.. ...--+| . .++++|.+-|.
T Consensus 69 ~~g~~~fFkg-------~~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~IDAA~~~~~~gk~yfFkG~----- 136 (225)
T 3oyo_A 69 EASEAYVFSG-------NHSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYLFKGN----- 136 (225)
T ss_dssp STTEEEEEET-------TEEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCCEEEECSSTTEEEEEETT-----
T ss_pred CCCeEEEEcC-------CEEEEEecccccCCCceecCchhhhhcCCCCCCcccccccceEEEECCCCcEEEEeCC-----
Confidence 5789999987 5688886532 222111 223331 1122233 2 37899999887
Q ss_pred CCcceEEEEeCCCCceeecc-----CCCC------CceeeeEEE--ECCeEEEEcCcCCCCCCCCeEEEEECC
Q psy2979 260 DGIEQVQRYNPKVNQWQDLA-----PMLI------PRSGAAICA--LDSCIYVLGGWHASTENTNRVECYHIA 319 (400)
Q Consensus 260 ~~~~~v~~yd~~~~~W~~~~-----~~~~------~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~ 319 (400)
..|+||..+++...-| ..|. +..--++.. .++++|++-|. ..|+||..
T Consensus 137 ----~yw~~d~~~~~~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG~--------~ywr~d~~ 197 (225)
T 3oyo_A 137 ----KYVRIAYDSKQLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKGQ--------NYVRIDFT 197 (225)
T ss_dssp ----EEEEEETTTTEEEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEETT--------EEEEEECC
T ss_pred ----eEEEEECCCCeecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEECC--------EEEEEeCC
Confidence 7899997776654311 1221 223334444 37899999874 79999998
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=92.10 E-value=5.7 Score=34.71 Aligned_cols=221 Identities=7% Similarity=-0.065 Sum_probs=105.6
Q ss_pred cceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEee---------------------------cCEEEEEECC
Q psy2979 124 LRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDI---------------------------VDIVYVAASM 175 (400)
Q Consensus 124 ~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~---------------------------~~~~~~yd~~ 175 (400)
...++.+|..+++...+...+. ....+.. ++..|++... ...++.+|+.
T Consensus 84 ~~~l~~~~~~~g~~~~l~~~~~---~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 160 (347)
T 2gop_A 84 VSEIWVADLETLSSKKILEAKN---IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTE 160 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEESE---EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETT
T ss_pred cceEEEEECCCCceEEEEcCCC---ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECC
Confidence 3468888888877666543332 2223333 4442444321 3568889998
Q ss_pred CCCe-EEccCCCCcceeeeEEEECCEEEEEcccCCCC---C-CCeEEEEeCCCCceEEccCCCCcccccEEEEeCCE-EE
Q psy2979 176 HKIL-HSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSC---R-LDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGM-LY 249 (400)
Q Consensus 176 ~~~w-~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~---~-~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~-iy 249 (400)
+++. ..+.. + .....+...+.+++.+...... . ...++.+| ++++..+..- .......-+|+ |+
T Consensus 161 ~~~~~~~l~~-~---~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~----~~~~~~spdg~~l~ 230 (347)
T 2gop_A 161 SEEVIEEFEK-P---RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK----VSFYAVDSDGERIL 230 (347)
T ss_dssp TTEEEEEEEE-E---TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE----ESEEEEEECSSCEE
T ss_pred CCeEEeeecC-C---CcccccCCCCeEEEEEecccccccccccccEEEeC--CCceEEeccC----cceeeECCCCCEEE
Confidence 8776 55544 2 2222233333355555433221 1 45688888 7777665431 11222244555 44
Q ss_pred EEcCccccCCCC-cceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccC
Q psy2979 250 VTGGAILEDGDG-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSP 328 (400)
Q Consensus 250 v~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 328 (400)
..+... ..+.. ...++.+| +.++..+.+-.........+..++ +|+.+..++ ...++ ++ +++...+..
T Consensus 231 ~~~~~~-~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~sdg-~~~~~~~~~----~~~l~-~~--~g~~~~~~~ 299 (347)
T 2gop_A 231 LYGKPE-KKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKDGK-VYFTLFEEG----SVNLY-IW--DGEIKPIAK 299 (347)
T ss_dssp EEECCS-SSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEETTE-EEEEEEETT----EEEEE-EE--SSSEEEEEC
T ss_pred EEEccc-cCCccccceEEEEC--CCceEeccccCCcccCCccEEcCc-EEEEEecCC----cEEEE-Ec--CCceEEEec
Confidence 443221 01111 45799999 566666643222111111222244 777665432 34677 77 344444322
Q ss_pred CcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCC
Q psy2979 329 MKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHL 377 (400)
Q Consensus 329 ~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~ 377 (400)
.. ...........+++.+.. . .....+|.+| ++.+.+...
T Consensus 300 ~~---~~v~~~~~s~~~~~~~~~-~--~~~~~l~~~~---g~~~~lt~~ 339 (347)
T 2gop_A 300 GR---HWIMGFDVDEIVVYLKET-A--TRLRELFTWD---GEEKQLTDY 339 (347)
T ss_dssp SS---SEEEEEEESSSEEEEEEC-S--SSCCEEEEES---SSEEECCCT
T ss_pred CC---CeEEeeeeeCcEEEEEcC-C--CChHHheEeC---CcEEEeccc
Confidence 11 111222222255555433 2 1224788887 455555443
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=92.02 E-value=4.3 Score=37.41 Aligned_cols=142 Identities=13% Similarity=0.076 Sum_probs=79.2
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE-eCC-EEEEEcCccccCCCCcceEEEEeCCCCce
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA-HEG-MLYVTGGAILEDGDGIEQVQRYNPKVNQW 275 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~v~~yd~~~~~W 275 (400)
++.||+.--. ..+.++|+.+++...+.+ ...+.. .++. -++ .||+.... ++.....+..+++.. .|
T Consensus 149 ~g~Lyv~d~~------~~I~~id~~~~~v~~~~~-~~~~P~-~ia~d~~G~~lyvad~~---~~~~~~~v~~~~~~g-~~ 216 (430)
T 3tc9_A 149 HNHLYLVGEQ------HPTRLIDFEKEYVSTVYS-GLSKVR-TICWTHEADSMIITNDQ---NNNDRPNNYILTRES-GF 216 (430)
T ss_dssp EEEEEEEEBT------EEEEEEETTTTEEEEEEC-CCSCEE-EEEECTTSSEEEEEECC---SCTTSEEEEEEEGGG-TS
T ss_pred CCeEEEEeCC------CcEEEEECCCCEEEEEec-CCCCcc-eEEEeCCCCEEEEEeCC---CCcccceEEEEeCCC-ce
Confidence 4789987431 578999999988877654 111111 2222 244 49998653 221123566676543 23
Q ss_pred e---eccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CC-EEEE
Q psy2979 276 Q---DLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DG-KIYV 347 (400)
Q Consensus 276 ~---~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~-~lyv 347 (400)
. .++.+..| +++++. ++.||+..-. ...+++||+.+..-..+...+.. ..+...++ ++ .||+
T Consensus 217 ~~~~~l~~~~~p---~giavdp~~g~lyv~d~~------~~~V~~~~~~~~~~~~~~~~~~~-~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 217 KVITELTKGQNC---NGAETHPINGELYFNSWN------AGQVFRYDFTTQETTPLFTIQDS-GWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp CSEEEEEECSSC---CCEEECTTTCCEEEEETT------TTEEEEEETTTTEEEEEEECSSS-SCCEEEEECTTSSEEEE
T ss_pred eeeeeeccCCCc---eEEEEeCCCCEEEEEECC------CCEEEEEECCCCcEEEEEEcCCC-CcceeEEEcCCCCEEEE
Confidence 3 33333332 344444 6789988643 56899999988765444333221 22333334 44 4999
Q ss_pred EcCccCCCCCCCeEEEEECC
Q psy2979 348 LGGEEGWDGYHDSIECYDVD 367 (400)
Q Consensus 348 ~GG~~~~~~~~~~v~~yd~~ 367 (400)
.--. .+.|++||+.
T Consensus 287 ~d~~------~~~I~~~~~d 300 (430)
T 3tc9_A 287 VVVN------QHYILRSDYD 300 (430)
T ss_dssp EETT------TTEEEEEEEE
T ss_pred EECC------CCEEEEEeCC
Confidence 8543 3567776554
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=91.97 E-value=6.9 Score=35.41 Aligned_cols=109 Identities=8% Similarity=-0.162 Sum_probs=60.6
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEe----------ecCEEEEEECCCCC
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLD----------IVDIVYVAASMHKI 178 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~----------~~~~~~~yd~~~~~ 178 (400)
..+|+.-... ....+.+.++|..+++-. ..++.....+ +++. +++.+|+.. ..+.+..+|+.+++
T Consensus 45 ~~vyV~~~~~-~~~~~~V~ViD~~t~~v~--~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~ 120 (386)
T 3sjl_D 45 RRVYVNDPAH-FAAVTQQFVIDGEAGRVI--GMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL 120 (386)
T ss_dssp TEEEEEECGG-GCSSEEEEEEETTTTEEE--EEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CEEEEEcCcc-cCCCCEEEEEECCCCeEE--EEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe
Confidence 5777764421 112368999999887643 2233232234 4444 455488874 24568999999887
Q ss_pred eEEccCCCC-cc-----eeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCce
Q psy2979 179 LHSLGSLKF-DF-----DVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEW 226 (400)
Q Consensus 179 w~~~~~~~~-~r-----~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 226 (400)
-..--+++. .| .-+.++.. +..+|+.... ..+++...|..+++=
T Consensus 121 v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~----~~~~VsVID~~t~~v 172 (386)
T 3sjl_D 121 PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS----PAPAVGVVDLEGKAF 172 (386)
T ss_dssp EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS----SSCEEEEEETTTTEE
T ss_pred EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC----CCCeEEEEECCCCcE
Confidence 543212221 11 11222222 4578886421 135789999988764
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.90 E-value=10 Score=37.18 Aligned_cols=104 Identities=13% Similarity=0.204 Sum_probs=55.2
Q ss_pred EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEE-EeCCEEEEEcCccccCCCCcceEEEEeCCCCceeec
Q psy2979 200 FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVV-AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDL 278 (400)
Q Consensus 200 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~ 278 (400)
..++.|+.+ ..+..||..+.+-...-.-..... .+++ .-++.+++.|+. ++ .+..||..+.+-.
T Consensus 532 ~~l~s~s~d-----~~v~vwd~~~~~~~~~~~~h~~~v-~~v~~spdg~~l~sg~~---Dg----~i~iwd~~~~~~~-- 596 (694)
T 3dm0_A 532 PTIVSASWD-----KTVKVWNLSNCKLRSTLAGHTGYV-STVAVSPDGSLCASGGK---DG----VVLLWDLAEGKKL-- 596 (694)
T ss_dssp CEEEEEETT-----SCEEEEETTTCCEEEEECCCSSCE-EEEEECTTSSEEEEEET---TS----BCEEEETTTTEEE--
T ss_pred ceEEEEeCC-----CeEEEEECCCCcEEEEEcCCCCCE-EEEEEeCCCCEEEEEeC---CC----eEEEEECCCCceE--
Confidence 356666655 358889988765432211111111 1122 236778888887 54 6888898776532
Q ss_pred cCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEE
Q psy2979 279 APMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWE 324 (400)
Q Consensus 279 ~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 324 (400)
..+.......+++...+..+++++. ...+..||..+++-.
T Consensus 597 ~~~~~~~~v~~~~~sp~~~~l~~~~------~~~i~iwd~~~~~~~ 636 (694)
T 3dm0_A 597 YSLEANSVIHALCFSPNRYWLCAAT------EHGIKIWDLESKSIV 636 (694)
T ss_dssp ECCBCSSCEEEEEECSSSSEEEEEE------TTEEEEEETTTTEEE
T ss_pred EEecCCCcEEEEEEcCCCcEEEEEc------CCCEEEEECCCCCCh
Confidence 2222222223333333333444443 356888998887643
|
| >1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=91.76 E-value=4.4 Score=32.72 Aligned_cols=144 Identities=9% Similarity=0.075 Sum_probs=81.6
Q ss_pred eEEEECCeEEEEEeecCEEEEEECCCC--CeEE--c----cCCCCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEe
Q psy2979 151 GLVVSGRNTIYCLDIVDIVYVAASMHK--ILHS--L----GSLKFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYD 220 (400)
Q Consensus 151 ~~~~~~~~~iyv~~~~~~~~~yd~~~~--~w~~--~----~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd 220 (400)
+++..++. +|++.. +.+|+++.... .... + +.+|.. --++... ++++|++-| +..++|+
T Consensus 11 Ai~~~~g~-~yfFkg-~~~Wr~~~~~~~~~~~p~~Is~~w~glP~~--IDAa~~~~~~~~~yfFkG-------~~yw~~~ 79 (195)
T 1itv_A 11 AIAEIGNQ-LYLFKD-GKYWRFSEGRGSRPQGPFLIADKWPALPRK--LDSVFEEPLSKKLFFFSG-------RQVWVYT 79 (195)
T ss_dssp EEEEETTE-EEEEET-TEEEEECCSSSCCCEEEEEHHHHCTTSCSS--CSEEEECTTTCCEEEEET-------TEEEEEE
T ss_pred EEEEeCCE-EEEEEC-CEEEEEECCccccCCCcEEhhhccCCCCCC--ccEEEEECCCCeEEEEeC-------CEEEEEc
Confidence 45567888 888843 66788876542 2211 1 223321 1122222 678999987 5678887
Q ss_pred CCCCce-EEcc--CCCCc--ccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceee-----cc-CCC-CCceee
Q psy2979 221 PTKNEW-SYIE--PMKLA--VTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQD-----LA-PML-IPRSGA 288 (400)
Q Consensus 221 ~~~~~W-~~~~--~l~~~--~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~-----~~-~~~-~~r~~~ 288 (400)
..+-.- ..+. .+|.. .-..+....++++|++-|. ..++||..+++-.. +. ..+ .|...-
T Consensus 80 ~~~~~~Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg~---------~ywr~d~~~~~~~~gyPr~i~~~w~Gvp~~id 150 (195)
T 1itv_A 80 GASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSGR---------RLWRFDVKAQMVDPRSASEVDRMFPGVPLDTH 150 (195)
T ss_dssp TTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEETT---------EEEEEETTTTEECGGGCEEHHHHSTTSCSSCS
T ss_pred CCccCCCEEeeecccCCCccceeEEEEcCCCeEEEEeCC---------EEEEEeCCcccccCCCccChhhcCCCCCCCCC
Confidence 542111 0111 23322 2222223247899999876 78999987754321 11 011 122334
Q ss_pred eEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCe
Q psy2979 289 AICALDSCIYVLGGWHASTENTNRVECYHIAENT 322 (400)
Q Consensus 289 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 322 (400)
++...++.+|.+-|. ..++||..+.+
T Consensus 151 aa~~~~g~~Yffkg~--------~y~~~~~~~~~ 176 (195)
T 1itv_A 151 DVFQFREKAYFCQDR--------FYWRVSSRSEL 176 (195)
T ss_dssp EEEEETTEEEEEETT--------EEEEEECCTTC
T ss_pred EEEEeCCeEEEEeCC--------EEEEEECCccE
Confidence 555668999999874 78999987765
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=91.31 E-value=6.8 Score=34.01 Aligned_cols=219 Identities=11% Similarity=0.057 Sum_probs=99.5
Q ss_pred EEEEEeccCCCcccceEEEEEcCCCceEE-ccCCcccceeeeEEEE-CCeEEEEE-eecCEEEEEECCCCCeEEccCCCC
Q psy2979 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKT-LSCLPFAISKHGLVVS-GRNTIYCL-DIVDIVYVAASMHKILHSLGSLKF 187 (400)
Q Consensus 111 ~i~~~gg~~~~~~~~~~~~yd~~~~~w~~-~~~~~~~~~~~~~~~~-~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~ 187 (400)
..++.|+.+ ..+..+|..+++-.. +..- ...-.+++.. ++. +++. .....+..+|.....-..+..-.
T Consensus 78 ~~l~s~s~D-----~~v~~wd~~~~~~~~~~~~h--~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~~~~~~~~~h~- 148 (319)
T 3frx_A 78 AYALSASWD-----KTLRLWDVATGETYQRFVGH--KSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQCLATLLGHN- 148 (319)
T ss_dssp SEEEEEETT-----SEEEEEETTTTEEEEEEECC--SSCEEEEEECTTSC-EEEEEETTSCEEEEETTSCEEEEECCCS-
T ss_pred CEEEEEeCC-----CEEEEEECCCCCeeEEEccC--CCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeEEEEeccC-
Confidence 345556554 578889988775322 2111 1111222332 223 3332 44456777787644322221111
Q ss_pred cceeeeEEEE-------CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCccccc-EEE-EeCCEEEEEcCccccC
Q psy2979 188 DFDVSGIAML-------DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSP-AVV-AHEGMLYVTGGAILED 258 (400)
Q Consensus 188 ~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~-~~~-~~~~~iyv~GG~~~~~ 258 (400)
..-..+... ++..++.||.+ ..+..||..+.+-... +......- +++ .-+++.++.||. +
T Consensus 149 -~~v~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~sp~g~~l~s~~~---d 217 (319)
T 3frx_A 149 -DWVSQVRVVPNEKADDDSVTIISAGND-----KMVKAWNLNQFQIEAD--FIGHNSNINTLTASPDGTLIASAGK---D 217 (319)
T ss_dssp -SCEEEEEECCC------CCEEEEEETT-----SCEEEEETTTTEEEEE--ECCCCSCEEEEEECTTSSEEEEEET---T
T ss_pred -CcEEEEEEccCCCCCCCccEEEEEeCC-----CEEEEEECCcchhhee--ecCCCCcEEEEEEcCCCCEEEEEeC---C
Confidence 011111111 23355666655 3578888876543221 11111111 122 236778888887 5
Q ss_pred CCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCe-EEEccC-CcC---c
Q psy2979 259 GDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENT-WEYKSP-MKE---K 332 (400)
Q Consensus 259 ~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~-W~~~~~-~~~---~ 332 (400)
+ .+..||..+.+-...-.... .-..++.. ++.+++.+. ...+..|+..... ...+.+ ... .
T Consensus 218 g----~i~iwd~~~~~~~~~~~~~~--~v~~~~~sp~~~~la~~~-------~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 284 (319)
T 3frx_A 218 G----EIMLWNLAAKKAMYTLSAQD--EVFSLAFSPNRYWLAAAT-------ATGIKVFSLDPQYLVDDLRPEFAGYSKA 284 (319)
T ss_dssp C----EEEEEETTTTEEEEEEECCS--CEEEEEECSSSSEEEEEE-------TTEEEEEEETTEEEEEEECCCCTTCCGG
T ss_pred C----eEEEEECCCCcEEEEecCCC--cEEEEEEcCCCCEEEEEc-------CCCcEEEEeCcCeeeeccCccccccccC
Confidence 4 78899987765221111111 11222222 455544443 2346666665443 222221 111 1
Q ss_pred cCc-ceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 333 RYR-PGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 333 ~~~-~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
... ...+.+ +|+.++.|+. + ..|.+||..+
T Consensus 285 ~~~~v~~~~~spdg~~l~sg~~-D-----g~i~vWd~~t 317 (319)
T 3frx_A 285 AEPHAVSLAWSADGQTLFAGYT-D-----NVIRVWQVMT 317 (319)
T ss_dssp GCCCEEEEEECTTSSEEEEEET-T-----SCEEEEEEEE
T ss_pred cCcceeEEEECCCCCEEEEeec-C-----ceEEEEEEee
Confidence 111 112233 7787788876 3 3577777654
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=90.98 E-value=7.7 Score=34.03 Aligned_cols=141 Identities=11% Similarity=0.077 Sum_probs=62.4
Q ss_pred EEEEEeccCCCcccceEEEEEcCCCceEE-ccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCCc
Q psy2979 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKT-LSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFD 188 (400)
Q Consensus 111 ~i~~~gg~~~~~~~~~~~~yd~~~~~w~~-~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~ 188 (400)
.+++.|+.+ ..+..+|..+++... +.. ....-.+++.. ++..++.......+..+|.....-.........
T Consensus 89 ~~l~s~s~D-----~~v~lwd~~~~~~~~~~~~--h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~ 161 (343)
T 2xzm_R 89 CFAISSSWD-----KTLRLWDLRTGTTYKRFVG--HQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENH 161 (343)
T ss_dssp TEEEEEETT-----SEEEEEETTSSCEEEEEEC--CCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSC
T ss_pred CEEEEEcCC-----CcEEEEECCCCcEEEEEcC--CCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCC
Confidence 344556554 578888888765432 211 11111223333 333133334456677788764322222211111
Q ss_pred ceeeeEEEE--C----------CEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccc
Q psy2979 189 FDVSGIAML--D----------GFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAIL 256 (400)
Q Consensus 189 r~~~~~~~~--~----------~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~ 256 (400)
......+.. + +..++.|+.+ ..+..||.....-..+..-..+ ....+..-+++.++.|+.
T Consensus 162 ~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~h~~~-v~~~~~s~~g~~l~sgs~-- 233 (343)
T 2xzm_R 162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWD-----GRLKVWNTNFQIRYTFKAHESN-VNHLSISPNGKYIATGGK-- 233 (343)
T ss_dssp SSCEEEEEECCCCCSCSCCCSSCCEEEEEETT-----SEEEEEETTTEEEEEEECCSSC-EEEEEECTTSSEEEEEET--
T ss_pred CceeeeeeeccccccccccCCCCCEEEEEcCC-----CEEEEEcCCCceeEEEcCcccc-ceEEEECCCCCEEEEEcC--
Confidence 111111111 1 1455666655 3577788432211111111111 111111236777788887
Q ss_pred cCCCCcceEEEEeCC
Q psy2979 257 EDGDGIEQVQRYNPK 271 (400)
Q Consensus 257 ~~~~~~~~v~~yd~~ 271 (400)
++ .+..||..
T Consensus 234 -dg----~v~iwd~~ 243 (343)
T 2xzm_R 234 -DK----KLLIWDIL 243 (343)
T ss_dssp -TC----EEEEEESS
T ss_pred -CC----eEEEEECC
Confidence 54 78889874
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=90.97 E-value=9.5 Score=35.06 Aligned_cols=109 Identities=8% Similarity=-0.203 Sum_probs=61.5
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEe----------ecCEEEEEECCCCC
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLD----------IVDIVYVAASMHKI 178 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~----------~~~~~~~yd~~~~~ 178 (400)
..+|+.-....... ..+.++|+.+++-. ..+|..... .+++. +++.+|+.. ..+.+..+|+.+++
T Consensus 85 ~~vyV~n~~~~~~~-~~VsVID~~t~~vv--~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~ 160 (426)
T 3c75_H 85 RRVYIQDPAHFAAI-TQQFVIDGSTGRIL--GMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL 160 (426)
T ss_dssp TEEEEEECTTTCSS-EEEEEEETTTTEEE--EEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CEEEEECCCcCCCC-CeEEEEECCCCEEE--EEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence 56777654321111 78999999987643 233333333 34443 444488884 35679999999887
Q ss_pred eEEccCCC-Ccc-----eeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCce
Q psy2979 179 LHSLGSLK-FDF-----DVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEW 226 (400)
Q Consensus 179 w~~~~~~~-~~r-----~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 226 (400)
-..--+++ .+| .-+.++.- ++.+||..-. ..+++.++|+.+++=
T Consensus 161 vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~----~~~~VsVID~~t~kv 212 (426)
T 3c75_H 161 PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS----PAPAVGVVDLEGKTF 212 (426)
T ss_dssp EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS----SSCEEEEEETTTTEE
T ss_pred EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC----CCCeEEEEECCCCeE
Confidence 54322222 111 11222222 4578886321 136799999998764
|
| >3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A | Back alignment and structure |
|---|
Probab=90.87 E-value=1.3 Score=36.87 Aligned_cols=102 Identities=12% Similarity=0.042 Sum_probs=59.3
Q ss_pred EECCEEEEEcccCCCCCCCeEEEEe--CCC--CceE----Ec----cCCCC---cccccEEEE--eCCEEEEEcCccccC
Q psy2979 196 MLDGFVYAVGGWDGSCRLDSVERYD--PTK--NEWS----YI----EPMKL---AVTSPAVVA--HEGMLYVTGGAILED 258 (400)
Q Consensus 196 ~~~~~iyv~GG~~~~~~~~~v~~yd--~~~--~~W~----~~----~~l~~---~~~~~~~~~--~~~~iyv~GG~~~~~ 258 (400)
..++++|++-| +.+++|+ +.+ ..-. .+ +.||. +..--++.. .++++|++-|.
T Consensus 70 ~~~g~~~fFKg-------~~~Wr~~~~~~~~~~~~~~gP~~I~~~w~gLp~~~~p~~IDAA~~~~~~~k~yfFkG~---- 138 (227)
T 3lp9_A 70 TENNEAFIFYE-------NFCALIDYAPHSKKDKIILGPKKIADVFPFFEGTVFESGIDAAYRSTRGKEVYLFKGD---- 138 (227)
T ss_dssp CSTTEEEEEET-------TEEEEEECCTTTCCCEEEEEEEEHHHHSGGGTTSTTTTCCSEEEECSSTTEEEEEETT----
T ss_pred CCCCEEEEEeC-------CEEEEEeCCCCccccccccCceEHhhhcCCCCCccCCCcccEEEEECCCCEEEEEECC----
Confidence 35899999987 5688888 321 1110 11 12331 111123333 26899999887
Q ss_pred CCCcceEEEEeCCCCceeec-----c-CCCC------CceeeeEEE--ECCeEEEEcCcCCCCCCCCeEEEEECCCC
Q psy2979 259 GDGIEQVQRYNPKVNQWQDL-----A-PMLI------PRSGAAICA--LDSCIYVLGGWHASTENTNRVECYHIAEN 321 (400)
Q Consensus 259 ~~~~~~v~~yd~~~~~W~~~-----~-~~~~------~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~ 321 (400)
..|+||..+++-..- . .+|. +..--++.. .++++|++-|. ..|+||..++
T Consensus 139 -----~yw~~d~~~~~~~~gyPk~i~~g~p~~~~~g~p~~iDAA~~~~~~g~~YfFkg~--------~Ywr~d~~~~ 202 (227)
T 3lp9_A 139 -----QYARIDYGSNSMVNKEIKSISSGYPCFRNTIFESGADAAFASHKTNEVYFFKDD--------HYARVKVTPX 202 (227)
T ss_dssp -----EEEEEETTTTEESSSSCEEHHHHCGGGTTSGGGGCCSEEEECSSTTEEEEEETT--------EEEEEECCSS
T ss_pred -----EEEEEeCCCccccCCCCeEHHHCCCCccccccCCCccEEEEcCCCceEEEEECC--------EEEEEECCcc
Confidence 799999876543221 0 1221 122333443 36899999874 7999998876
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=90.82 E-value=3.2 Score=38.24 Aligned_cols=148 Identities=11% Similarity=0.005 Sum_probs=80.1
Q ss_pred eEEEE---CCeEEEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEEE-C-CEEEEEcccCCCCCCCeEEEEeCCCCc
Q psy2979 151 GLVVS---GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML-D-GFVYAVGGWDGSCRLDSVERYDPTKNE 225 (400)
Q Consensus 151 ~~~~~---~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~v~~yd~~~~~ 225 (400)
.+++- ++. ||+......+..+|+..++...+.... ..-..++.- + +.||+.....+ .....+..++... .
T Consensus 141 ~lavdp~~~g~-Lyv~d~~~~I~~id~~~~~v~~~~~~~--~~P~~ia~d~~G~~lyvad~~~~-~~~~~v~~~~~~g-~ 215 (430)
T 3tc9_A 141 WLSFDPKNHNH-LYLVGEQHPTRLIDFEKEYVSTVYSGL--SKVRTICWTHEADSMIITNDQNN-NDRPNNYILTRES-G 215 (430)
T ss_dssp EEEEETTEEEE-EEEEEBTEEEEEEETTTTEEEEEECCC--SCEEEEEECTTSSEEEEEECCSC-TTSEEEEEEEGGG-T
T ss_pred EEEECCCCCCe-EEEEeCCCcEEEEECCCCEEEEEecCC--CCcceEEEeCCCCEEEEEeCCCC-cccceEEEEeCCC-c
Confidence 44444 345 999854488999999988877665411 111122222 3 45898754322 1223455566543 3
Q ss_pred eE---EccCCCCcccccEEEEe--CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCe-EE
Q psy2979 226 WS---YIEPMKLAVTSPAVVAH--EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSC-IY 298 (400)
Q Consensus 226 W~---~~~~l~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~-iy 298 (400)
|. .++.+. .-+.+++. ++.||+.--. ...+++||+.+..-..+...+....-..++.. +++ ||
T Consensus 216 ~~~~~~l~~~~---~p~giavdp~~g~lyv~d~~-------~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~ly 285 (430)
T 3tc9_A 216 FKVITELTKGQ---NCNGAETHPINGELYFNSWN-------AGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAY 285 (430)
T ss_dssp SCSEEEEEECS---SCCCEEECTTTCCEEEEETT-------TTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEE
T ss_pred eeeeeeeccCC---CceEEEEeCCCCEEEEEECC-------CCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEE
Confidence 32 333222 22344443 6889988543 34799999987765333322221111233333 454 99
Q ss_pred EEcCcCCCCCCCCeEEEEECC
Q psy2979 299 VLGGWHASTENTNRVECYHIA 319 (400)
Q Consensus 299 v~GG~~~~~~~~~~v~~yd~~ 319 (400)
+..-. ...+++|++.
T Consensus 286 v~d~~------~~~I~~~~~d 300 (430)
T 3tc9_A 286 IVVVN------QHYILRSDYD 300 (430)
T ss_dssp EEETT------TTEEEEEEEE
T ss_pred EEECC------CCEEEEEeCC
Confidence 98644 5678887654
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=90.82 E-value=12 Score=36.19 Aligned_cols=189 Identities=11% Similarity=0.097 Sum_probs=103.2
Q ss_pred eeeeEEEE--CCeEEEEEe-ecCEEEEEECCCCC-eEEccCCCCcceeeeEEE--ECCEEEEEcccCCCCCCCeEEEEeC
Q psy2979 148 SKHGLVVS--GRNTIYCLD-IVDIVYVAASMHKI-LHSLGSLKFDFDVSGIAM--LDGFVYAVGGWDGSCRLDSVERYDP 221 (400)
Q Consensus 148 ~~~~~~~~--~~~~iyv~~-~~~~~~~yd~~~~~-w~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~ 221 (400)
...++++. ++. ||+.+ ..+.++++++.... +..+-.-.. ..-.++++ .++.||+.-. ....++++++
T Consensus 41 ~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~-~~P~GlAvD~~~~~ly~~d~-----~~~~I~v~~~ 113 (619)
T 3s94_A 41 DAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGL-LSPDGLACDWLGEKLYWTDS-----ETNRIEVSNL 113 (619)
T ss_dssp CEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSC-SCEEEEEEETTTTEEEEEET-----TTTEEEEEET
T ss_pred ceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCC-CCcCeEEEEecCCEEEEEeC-----CCCEEEEEEC
Confidence 33455554 556 88883 34678888876542 232221110 12233444 3789999743 2367899998
Q ss_pred CCCceEEc--cCCCCcccccEEEE--eCCEEEEEc-CccccCCCCcceEEEEeCCCCceeecc--CCCCCceeeeEEEE-
Q psy2979 222 TKNEWSYI--EPMKLAVTSPAVVA--HEGMLYVTG-GAILEDGDGIEQVQRYNPKVNQWQDLA--PMLIPRSGAAICAL- 293 (400)
Q Consensus 222 ~~~~W~~~--~~l~~~~~~~~~~~--~~~~iyv~G-G~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~r~~~~~~~~- 293 (400)
....-..+ ..+..|+ ++++ .++.||+.. |. ...+++.++....-+.+. .+..| .+++.-
T Consensus 114 dG~~~~~l~~~~l~~P~---~Iavdp~~g~ly~tD~g~-------~~~I~r~~~dG~~~~~l~~~~~~~P---~Glald~ 180 (619)
T 3s94_A 114 DGSLRKVLFWQELDQPR---AIALDPSSGFMYWTDWGE-------VPKIERAGMDGSSRFIIINSEIYWP---NGLTLDY 180 (619)
T ss_dssp TSCSCEEEECSSCSCCC---CEEEETTTTEEEEEECSS-------SCEEEEEETTSCSCEEEECSSCSSE---EEEEEET
T ss_pred CCCCEEEEEeCCCCCCc---eEEEecCCCeEEEeccCC-------CCEEEEEECCCCceEEEEeCCCCCC---cEEEEEc
Confidence 76543333 2333333 3444 478999985 22 247888888765444332 22222 334433
Q ss_pred -CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 294 -DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 294 -~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
+++||+.... ...++++|+....=..+... ....-+++++.+++||+.--. .+.|++.|..++
T Consensus 181 ~~~~LY~aD~~------~~~I~~~~~dG~~~~~~~~~-~~~~P~gi~~~~~~ly~td~~------~~~V~~~d~~tg 244 (619)
T 3s94_A 181 EEQKLYWADAK------LNFIHKSNLDGTNRQAVVKG-SLPHPFALTLFEDILYWTDWS------THSILACNKYTG 244 (619)
T ss_dssp TTTEEEEEETT------TCCEEEESSSCCEEC----------CCCEEESSSEEEEECTT------TCSEEEEESSSC
T ss_pred cCCEEEEEeCC------CCeEEEecCCCCccEEEEeC-CCCCceEEEEeCCEEEEecCC------CCEEEEEECCCC
Confidence 6899999765 56899999876543333210 111224666678899987533 345677776554
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.75 E-value=7.2 Score=33.31 Aligned_cols=247 Identities=10% Similarity=-0.015 Sum_probs=111.1
Q ss_pred ceEEEEEcCCCceEEccCCccc-ceeeeEEEE-CCeEEEEE-eecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFA-ISKHGLVVS-GRNTIYCL-DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFV 201 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~-~~~~~~~~~-~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~i 201 (400)
.++.++|..+++..+.-.+... ..-.+++.. ++. .++. .....+..+|..+++-...-.... ........++.+
T Consensus 45 ~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~-~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~--~~~~~~~~~~~~ 121 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN-YLAVGTSSAEVQLWDVQQQKRLRNMTSHS--ARVGSLSWNSYI 121 (318)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEEEEEETTE
T ss_pred CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCC-EEEEEECCCcEEEeecCCceeEEEecCcc--ceEEEeecCCCE
Confidence 4789999999886654333322 222334443 333 3333 555678888988775432211111 111222334555
Q ss_pred EEEcccCCCCCCCeEEEEeCCCCceEEccC-CCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCcee--ec
Q psy2979 202 YAVGGWDGSCRLDSVERYDPTKNEWSYIEP-MKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQ--DL 278 (400)
Q Consensus 202 yv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~--~~ 278 (400)
.+.|+.+ ..+..++..+........ -............++..++.|+. ++ .+..||..+.+-. ..
T Consensus 122 l~s~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---d~----~i~iwd~~~~~~~~~~~ 189 (318)
T 4ggc_A 122 LSSGSRS-----GHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN---DN----LVNVWPSAPGEGGWVPL 189 (318)
T ss_dssp EEEEETT-----SEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET---TS----CEEEEESSCBTTBSCCS
T ss_pred EEEEecC-----CceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEec---Cc----ceeEEECCCCcccccce
Confidence 5555544 234445544443221110 01111111222235666677766 44 6888888754321 11
Q ss_pred cCCCCC-ceeeeEEEE--CCeE-EEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCC
Q psy2979 279 APMLIP-RSGAAICAL--DSCI-YVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGW 354 (400)
Q Consensus 279 ~~~~~~-r~~~~~~~~--~~~i-yv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~ 354 (400)
...... ..-...+.. ++.+ .+.+|.. ...+..+|..+..-..................++.+++.+|. .
T Consensus 190 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~-~- 262 (318)
T 4ggc_A 190 QTFTQHQGAVKAVAWCPWQSNVLATGGGTS-----DRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGF-A- 262 (318)
T ss_dssp EEECCCCSCEEEEEECTTSTTEEEEEECTT-----TCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECT-T-
T ss_pred eeecccCCceEEEEecCCCCcEEEEEecCC-----CCEEEEEecccccccccccceeeeeeeeecccccceEEEEEc-C-
Confidence 111111 111122222 3333 3334331 457888888777654433222221111111125566666554 2
Q ss_pred CCCCCeEEEEECCCCcEEEecCCCCCCC-ceeeEEEccccccccc
Q psy2979 355 DGYHDSIECYDVDNDSWEIMSHLPSARS-WLGCVPLQIHKSQFVD 398 (400)
Q Consensus 355 ~~~~~~v~~yd~~~~~W~~~~~~~~~r~-~~~~~~~~~~~~~~~~ 398 (400)
...|.+||..+.+ .+..+..-.. -.+++...+..+++.+
T Consensus 263 ---d~~i~iwd~~~~~--~~~~l~gH~~~V~~l~~spdg~~l~S~ 302 (318)
T 4ggc_A 263 ---QNQLVIWKYPTMA--KVAELKGHTSRVLSLTMSPDGATVASA 302 (318)
T ss_dssp ---TCCEEEEETTTCC--EEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred ---CCEEEEEECCCCc--EEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 2468899987764 3333332112 2334444455555443
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.60 E-value=7.4 Score=33.22 Aligned_cols=143 Identities=14% Similarity=0.119 Sum_probs=71.6
Q ss_pred EEEEeecCEEEEEECCCCCeEEccCCCCcc-eeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCccc
Q psy2979 160 IYCLDIVDIVYVAASMHKILHSLGSLKFDF-DVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVT 237 (400)
Q Consensus 160 iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r-~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~ 237 (400)
++.+..-+.+..+|..+++....-.+.... .-.+++.. +++.++.|+.+ ..+..||..+++-.... .....
T Consensus 38 ~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~D-----g~v~iw~~~~~~~~~~~--~~h~~ 110 (318)
T 4ggc_A 38 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS-----AEVQLWDVQQQKRLRNM--TSHSA 110 (318)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEEE--ECCSS
T ss_pred EEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECC-----CcEEEeecCCceeEEEe--cCccc
Confidence 333333456778888887765433332221 12222222 56777778765 46888998887643321 11111
Q ss_pred ccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCC-CCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEE
Q psy2979 238 SPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPML-IPRSGAAICALDSCIYVLGGWHASTENTNRVECY 316 (400)
Q Consensus 238 ~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~y 316 (400)
.......++.+.+.|+. + ..+..++..+.......... ...........++..++.|+. ...+..|
T Consensus 111 ~~~~~~~~~~~l~s~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~------d~~i~iw 177 (318)
T 4ggc_A 111 RVGSLSWNSYILSSGSR---S----GHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN------DNLVNVW 177 (318)
T ss_dssp CEEEEEEETTEEEEEET---T----SEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET------TSCEEEE
T ss_pred eEEEeecCCCEEEEEec---C----CceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEec------CcceeEE
Confidence 22334445666666665 3 24555555444322211111 111112222235666666665 4568888
Q ss_pred ECCCCe
Q psy2979 317 HIAENT 322 (400)
Q Consensus 317 d~~~~~ 322 (400)
|..+++
T Consensus 178 d~~~~~ 183 (318)
T 4ggc_A 178 PSAPGE 183 (318)
T ss_dssp ESSCBT
T ss_pred ECCCCc
Confidence 887643
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=90.53 E-value=9 Score=34.08 Aligned_cols=139 Identities=8% Similarity=0.002 Sum_probs=75.4
Q ss_pred CeEEEEeCCCCceEEccCCCCcccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCce--eeeE
Q psy2979 214 DSVERYDPTKNEWSYIEPMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRS--GAAI 290 (400)
Q Consensus 214 ~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~--~~~~ 290 (400)
..+..+|+.+.+.......... -.+++. -++++++.++. +.+..++..+.............. ....
T Consensus 157 ~~i~iwd~~~~~~~~~~~~~~~--V~~v~fspdg~~l~s~s~--------~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 226 (365)
T 4h5i_A 157 AIMRIIDPSDLTEKFEIETRGE--VKDLHFSTDGKVVAYITG--------SSLEVISTVTGSCIARKTDFDKNWSLSKIN 226 (365)
T ss_dssp CEEEEEETTTTEEEEEEECSSC--CCEEEECTTSSEEEEECS--------SCEEEEETTTCCEEEEECCCCTTEEEEEEE
T ss_pred CEEEEeECCCCcEEEEeCCCCc--eEEEEEccCCceEEeccc--------eeEEEEEeccCcceeeeecCCCCCCEEEEE
Confidence 4688899988765443221111 122322 36777766654 256777776665443322222211 2222
Q ss_pred EEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccC--CcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEEC
Q psy2979 291 CALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSP--MKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDV 366 (400)
Q Consensus 291 ~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~--~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~ 366 (400)
..-++..++.++.++.. ...+..+|.....+..... +........++.+ +|++++.|+. + ..|.+||.
T Consensus 227 fspdg~~l~~~s~d~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~-D-----~~V~iwd~ 298 (365)
T 4h5i_A 227 FIADDTVLIAASLKKGK--GIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASN-D-----NSIALVKL 298 (365)
T ss_dssp EEETTEEEEEEEESSSC--CEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEET-T-----SCEEEEET
T ss_pred EcCCCCEEEEEecCCcc--eeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcC-C-----CEEEEEEC
Confidence 33478888877654432 2357777777766544322 1111112223333 7888888887 3 46889998
Q ss_pred CCCc
Q psy2979 367 DNDS 370 (400)
Q Consensus 367 ~~~~ 370 (400)
.+.+
T Consensus 299 ~~~~ 302 (365)
T 4h5i_A 299 KDLS 302 (365)
T ss_dssp TTTE
T ss_pred CCCc
Confidence 8764
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=90.43 E-value=8.6 Score=33.69 Aligned_cols=135 Identities=9% Similarity=0.006 Sum_probs=62.7
Q ss_pred eecCEEEEEECCCCCeEE-ccCCCCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEE
Q psy2979 164 DIVDIVYVAASMHKILHS-LGSLKFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAV 241 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~-~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~ 241 (400)
.....+..+|..+++... +.. ....-.+++.. ++..++.||.+ ..+..||.....-............-.+
T Consensus 95 s~D~~v~lwd~~~~~~~~~~~~--h~~~v~~v~~sp~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 167 (343)
T 2xzm_R 95 SWDKTLRLWDLRTGTTYKRFVG--HQSEVYSVAFSPDNRQILSAGAE-----REIKLWNILGECKFSSAEKENHSDWVSC 167 (343)
T ss_dssp ETTSEEEEEETTSSCEEEEEEC--CCSCEEEEEECSSTTEEEEEETT-----SCEEEEESSSCEEEECCTTTSCSSCEEE
T ss_pred cCCCcEEEEECCCCcEEEEEcC--CCCcEEEEEECCCCCEEEEEcCC-----CEEEEEeccCCceeeeecccCCCceeee
Confidence 445678888988765322 111 11111122222 45566667755 3577788764432222211111111111
Q ss_pred EEe--C----------CEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCC
Q psy2979 242 VAH--E----------GMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTEN 309 (400)
Q Consensus 242 ~~~--~----------~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~ 309 (400)
+.. + +..++.|+. ++ .+..||.....-..+..-..+ -......-+++.++.|+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~l~s~~~---d~----~i~iwd~~~~~~~~~~~h~~~-v~~~~~s~~g~~l~sgs~------ 233 (343)
T 2xzm_R 168 VRYSPIMKSANKVQPFAPYFASVGW---DG----RLKVWNTNFQIRYTFKAHESN-VNHLSISPNGKYIATGGK------ 233 (343)
T ss_dssp EEECCCCCSCSCCCSSCCEEEEEET---TS----EEEEEETTTEEEEEEECCSSC-EEEEEECTTSSEEEEEET------
T ss_pred eeeccccccccccCCCCCEEEEEcC---CC----EEEEEcCCCceeEEEcCcccc-ceEEEECCCCCEEEEEcC------
Confidence 111 1 246667776 44 688888432211111111111 111111226777777776
Q ss_pred CCeEEEEECC
Q psy2979 310 TNRVECYHIA 319 (400)
Q Consensus 310 ~~~v~~yd~~ 319 (400)
...+..||..
T Consensus 234 dg~v~iwd~~ 243 (343)
T 2xzm_R 234 DKKLLIWDIL 243 (343)
T ss_dssp TCEEEEEESS
T ss_pred CCeEEEEECC
Confidence 4578888874
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=90.42 E-value=13 Score=35.77 Aligned_cols=139 Identities=8% Similarity=-0.040 Sum_probs=68.0
Q ss_pred ceEEEEEcCCCceEE-ccC--C---cccceeeeEEEE-CCeEEEEE-eecCEEEEEECCCCCeEEccCCCC-cceeeeEE
Q psy2979 125 RSVEGFCVKTKVWKT-LSC--L---PFAISKHGLVVS-GRNTIYCL-DIVDIVYVAASMHKILHSLGSLKF-DFDVSGIA 195 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~-~~~--~---~~~~~~~~~~~~-~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~-~r~~~~~~ 195 (400)
..+..+|..+++... +.. + .....-.+++.. ++. .++. .....+..+|..+.+....-.... .......+
T Consensus 212 ~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~ 290 (611)
T 1nr0_A 212 GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGI 290 (611)
T ss_dssp SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEE
T ss_pred CcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEE
Confidence 467788877765432 211 0 111122234443 344 3333 555678889988776543222111 11111122
Q ss_pred EECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEE-EeCCEEEEEcCccccCCCCcceEEEEeCCCCc
Q psy2979 196 MLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVV-AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ 274 (400)
Q Consensus 196 ~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 274 (400)
..++..++.++.+ ..+..||+.+++-.....-.... -.+++ .-+++..+.|+. ++ .+..||..+..
T Consensus 291 ~~~~~~l~s~s~d-----~~i~~~~~~~~~~~~~~~gh~~~-v~~l~~spdg~~l~s~s~---D~----~v~~Wd~~~~~ 357 (611)
T 1nr0_A 291 IWTKQALVSISAN-----GFINFVNPELGSIDQVRYGHNKA-ITALSSSADGKTLFSADA---EG----HINSWDISTGI 357 (611)
T ss_dssp EECSSCEEEEETT-----CCEEEEETTTTEEEEEECCCSSC-EEEEEECTTSSEEEEEET---TS----CEEEEETTTCC
T ss_pred EEcCCEEEEEeCC-----CcEEEEeCCCCCcceEEcCCCCC-EEEEEEeCCCCEEEEEeC---CC----cEEEEECCCCc
Confidence 2355555555544 34777888776532211101111 11122 236777777776 54 68888987766
Q ss_pred eee
Q psy2979 275 WQD 277 (400)
Q Consensus 275 W~~ 277 (400)
...
T Consensus 358 ~~~ 360 (611)
T 1nr0_A 358 SNR 360 (611)
T ss_dssp EEE
T ss_pred eee
Confidence 544
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=90.38 E-value=6.2 Score=37.69 Aligned_cols=151 Identities=13% Similarity=0.048 Sum_probs=77.8
Q ss_pred EEEEEcccCCCCCCCeEEEEeC--CCCceEEccCCCCcccccEEEEeCC-EEEEEcCccccCCCCcceEEEEeCCCCcee
Q psy2979 200 FVYAVGGWDGSCRLDSVERYDP--TKNEWSYIEPMKLAVTSPAVVAHEG-MLYVTGGAILEDGDGIEQVQRYNPKVNQWQ 276 (400)
Q Consensus 200 ~iyv~GG~~~~~~~~~v~~yd~--~~~~W~~~~~l~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~ 276 (400)
++.+.+...+......++..++ .... ..+...+..+ ..+...++ .++++.+. . +.+..||..+.+-.
T Consensus 76 ~~l~~~~~~~g~~~~~l~~~~~~~~g~~-~~l~~~~~~~--~~~~s~dg~~~~~~s~~---~----~~~~l~d~~~g~~~ 145 (582)
T 3o4h_A 76 RVILVRDVSKGAEQHALFKVNTSRPGEE-QRLEAVKPMR--ILSGVDTGEAVVFTGAT---E----DRVALYALDGGGLR 145 (582)
T ss_dssp EEEEEEECSTTSCCEEEEEEETTSTTCC-EECTTSCSBE--EEEEEECSSCEEEEEEC---S----SCEEEEEEETTEEE
T ss_pred eEEEEeccCCCCcceEEEEEeccCCCcc-ccccCCCCce--eeeeCCCCCeEEEEecC---C----CCceEEEccCCcEE
Confidence 5544443322222345666776 4332 2333332222 22333343 44444443 2 23457888887766
Q ss_pred eccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCC
Q psy2979 277 DLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGW 354 (400)
Q Consensus 277 ~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~ 354 (400)
.+...+. ......-+|+..++++.+... ...++.+|+.++++..+...+... ..... +|+.++.+.. +
T Consensus 146 ~l~~~~~---~~~~~spDG~~la~~~~~~~~--~~~i~~~d~~~g~~~~l~~~~~~~---~~~~~SpDG~~l~~~~~-~- 215 (582)
T 3o4h_A 146 ELARLPG---FGFVSDIRGDLIAGLGFFGGG--RVSLFTSNLSSGGLRVFDSGEGSF---SSASISPGMKVTAGLET-A- 215 (582)
T ss_dssp EEEEESS---CEEEEEEETTEEEEEEEEETT--EEEEEEEETTTCCCEEECCSSCEE---EEEEECTTSCEEEEEEC-S-
T ss_pred EeecCCC---ceEEECCCCCEEEEEEEcCCC--CeEEEEEcCCCCCceEeecCCCcc---ccceECCCCCEEEEccC-C-
Confidence 6643332 233344467666655543222 257999999999888765432211 22222 5654443332 1
Q ss_pred CCCCCeEEEEECCCCcEE
Q psy2979 355 DGYHDSIECYDVDNDSWE 372 (400)
Q Consensus 355 ~~~~~~v~~yd~~~~~W~ 372 (400)
....|+++|+.+++.+
T Consensus 216 --~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 216 --REARLVTVDPRDGSVE 231 (582)
T ss_dssp --SCEEEEEECTTTCCEE
T ss_pred --CeeEEEEEcCCCCcEE
Confidence 1257999999998877
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=90.24 E-value=15 Score=36.12 Aligned_cols=193 Identities=11% Similarity=0.010 Sum_probs=100.0
Q ss_pred CEEEEEECCCCCeEEccCCCCcceeeeEEEECC-EEEEEcccCC-------CCCCCeEEEEeCCCCce--EEccCCCC--
Q psy2979 167 DIVYVAASMHKILHSLGSLKFDFDVSGIAMLDG-FVYAVGGWDG-------SCRLDSVERYDPTKNEW--SYIEPMKL-- 234 (400)
Q Consensus 167 ~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~-------~~~~~~v~~yd~~~~~W--~~~~~l~~-- 234 (400)
..++.+|..+++..... .+..+. .+.+..++ .||....... ......+++++..+.+= ..+-..+.
T Consensus 155 ~~i~v~dl~tg~~~~~~-~~~~k~-~~~~WsDg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~ 232 (693)
T 3iuj_A 155 REIHLMDVESKQPLETP-LKDVKF-SGISWLGNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQ 232 (693)
T ss_dssp EEEEEEETTTCSEEEEE-EEEEES-CCCEEETTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGG
T ss_pred EEEEEEECCCCCCCccc-cCCcee-ccEEEeCCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCC
Confidence 46888999998865431 111111 22222255 4554432211 12345688888776642 12222221
Q ss_pred cccccEE-EEeCCEEEEEcCccccCCCCcceEEEEeCCCC--ceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCC
Q psy2979 235 AVTSPAV-VAHEGMLYVTGGAILEDGDGIEQVQRYNPKVN--QWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTN 311 (400)
Q Consensus 235 ~~~~~~~-~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 311 (400)
+....++ ..-+++..++... .+...+.++.+|..+. .|..+.+-...... .....++.+|+....+.. ..
T Consensus 233 ~~~~~~~~~SpDg~~l~~~~~---~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~-~~~~~g~~l~~~t~~~~~---~~ 305 (693)
T 3iuj_A 233 HHRYVGATVTEDDRFLLISAA---NSTSGNRLYVKDLSQENAPLLTVQGDLDADVS-LVDNKGSTLYLLTNRDAP---NR 305 (693)
T ss_dssp CCSEEEEEECTTSCEEEEEEE---SSSSCCEEEEEETTSTTCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCT---TC
T ss_pred CeEEEEEEEcCCCCEEEEEEc---cCCCCcEEEEEECCCCCCceEEEeCCCCceEE-EEeccCCEEEEEECCCCC---CC
Confidence 1111122 2235543333221 1111358999998665 67776543222222 233457889988765332 45
Q ss_pred eEEEEECCCC---eEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEe
Q psy2979 312 RVECYHIAEN---TWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 312 ~v~~yd~~~~---~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 374 (400)
.++.+|..+. .|+.+.+..... . .....++.|++..-. + ....++++|+.++..+.+
T Consensus 306 ~l~~~d~~~~~~~~~~~l~~~~~~~-~-~~s~~g~~lv~~~~~-~---g~~~l~~~d~~g~~~~~l 365 (693)
T 3iuj_A 306 RLVTVDAANPGPAHWRDLIPERQQV-L-TVHSGSGYLFAEYMV-D---ATARVEQFDYEGKRVREV 365 (693)
T ss_dssp EEEEEETTSCCGGGCEEEECCCSSC-E-EEEEETTEEEEEEEE-T---TEEEEEEECTTSCEEEEE
T ss_pred EEEEEeCCCCCccccEEEecCCCCE-E-EEEEECCEEEEEEEE-C---CeeEEEEEECCCCeeEEe
Confidence 8999998764 487765433222 2 455557777665433 2 235788999887655554
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=89.88 E-value=2.6 Score=38.57 Aligned_cols=102 Identities=6% Similarity=0.033 Sum_probs=52.6
Q ss_pred EEEEcCccccCCCCcceEEEEeCCCCc---eee--ccCCC-CCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECC
Q psy2979 248 LYVTGGAILEDGDGIEQVQRYNPKVNQ---WQD--LAPML-IPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIA 319 (400)
Q Consensus 248 iyv~GG~~~~~~~~~~~v~~yd~~~~~---W~~--~~~~~-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~ 319 (400)
+++.|+. ++ .+..||..+.. +.. ...+. ....-..++.. ++.+++.|+. ...+..||..
T Consensus 196 ~l~s~~~---dg----~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~------dg~i~i~d~~ 262 (430)
T 2xyi_A 196 YLLSASD---DH----TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD------DQKLMIWDTR 262 (430)
T ss_dssp EEEEECT---TS----CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEET------TSEEEEEETT
T ss_pred eEEEEeC---CC----eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeC------CCeEEEEECC
Confidence 7777776 44 68889887621 211 11111 11112222222 5677777765 5689999988
Q ss_pred CCe-EEEccCCcCccCcceEEEE--CC-EEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 320 ENT-WEYKSPMKEKRYRPGIAVI--DG-KIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 320 ~~~-W~~~~~~~~~~~~~~~~~~--~~-~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
+.. ...+..+........++.+ ++ .+++.|+. + ..|.+||..+
T Consensus 263 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~-d-----g~v~vwd~~~ 309 (430)
T 2xyi_A 263 NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA-D-----KTVALWDLRN 309 (430)
T ss_dssp CSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEET-T-----SEEEEEETTC
T ss_pred CCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeC-C-----CeEEEEeCCC
Confidence 652 0001011111112223333 23 47888876 2 4688888876
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=89.69 E-value=9.9 Score=33.27 Aligned_cols=195 Identities=14% Similarity=0.131 Sum_probs=104.0
Q ss_pred cCEEEEEECCCCCeEEccCCCCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCc---eEEccCCCCcccccE
Q psy2979 166 VDIVYVAASMHKILHSLGSLKFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNE---WSYIEPMKLAVTSPA 240 (400)
Q Consensus 166 ~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~---W~~~~~l~~~~~~~~ 240 (400)
.+.+...|+....-......+......++... ++.||+.-- ....+.++++.... +.....+..+ .+
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~-----~~~~I~r~~~~g~~~~~~~~~~~l~~p---~g 83 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDV-----SEEAIKRTEFNKTESVQNVVVSGLLSP---DG 83 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEET-----TTTEEEEEETTSSSCCCEEEEECCSCC---CE
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEEC-----CCCcEEEEEccCCCceEEEEcCCCCCc---cE
Confidence 45677778776531100001111222233332 578998743 23568899887652 2222222221 23
Q ss_pred EEE--eCCEEEEEcCccccCCCCcceEEEEeCCCCceeec--cCCCCCceeeeEEEE--CCeEEEEc-CcCCCCCCCCeE
Q psy2979 241 VVA--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDL--APMLIPRSGAAICAL--DSCIYVLG-GWHASTENTNRV 313 (400)
Q Consensus 241 ~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~--~~~~~~r~~~~~~~~--~~~iyv~G-G~~~~~~~~~~v 313 (400)
+++ .++.||+.-.. ...++++++....-+.+ ..+..|+ ++++- ++.||+.. |. ...+
T Consensus 84 lavd~~~g~ly~~d~~-------~~~I~~~~~dG~~~~~l~~~~~~~P~---giavdp~~g~ly~td~~~------~~~I 147 (318)
T 3sov_A 84 LACDWLGEKLYWTDSE-------TNRIEVSNLDGSLRKVLFWQELDQPR---AIALDPSSGFMYWTDWGE------VPKI 147 (318)
T ss_dssp EEEETTTTEEEEEETT-------TTEEEEEETTSCSCEEEECSSCSSEE---EEEEEGGGTEEEEEECSS------SCEE
T ss_pred EEEEcCCCeEEEEECC-------CCEEEEEECCCCcEEEEEeCCCCCcc---EEEEeCCCCEEEEEecCC------CCEE
Confidence 444 48899998554 35789999876543333 2333332 33333 68999886 32 4689
Q ss_pred EEEECCCCeEEEccCCcCccCcc-eEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEec--CCCCCCCceeeEE
Q psy2979 314 ECYHIAENTWEYKSPMKEKRYRP-GIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMS--HLPSARSWLGCVP 388 (400)
Q Consensus 314 ~~yd~~~~~W~~~~~~~~~~~~~-~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~r~~~~~~~ 388 (400)
+++++....-+.+..- ....+ +++.- +++||+.-.. ...|+++|+....-+.+. .+..| .++++
T Consensus 148 ~r~~~dG~~~~~~~~~--~l~~Pnglavd~~~~~lY~aD~~------~~~I~~~d~dG~~~~~~~~~~~~~P---~glav 216 (318)
T 3sov_A 148 ERAGMDGSSRFIIINS--EIYWPNGLTLDYEEQKLYWADAK------LNFIHKSNLDGTNRQAVVKGSLPHP---FALTL 216 (318)
T ss_dssp EEEETTSCSCEEEECS--SCSCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEECSCCSCE---EEEEE
T ss_pred EEEEcCCCCeEEEEEC--CCCCccEEEEeccCCEEEEEECC------CCEEEEEcCCCCceEEEecCCCCCc---eEEEE
Confidence 9999875432222111 11222 33333 6899998543 468999998765444443 23222 56666
Q ss_pred Ecccccc
Q psy2979 389 LQIHKSQ 395 (400)
Q Consensus 389 ~~~~~~~ 395 (400)
.++..|+
T Consensus 217 ~~~~lyw 223 (318)
T 3sov_A 217 FEDILYW 223 (318)
T ss_dssp ETTEEEE
T ss_pred eCCEEEE
Confidence 5554444
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=89.37 E-value=10 Score=36.41 Aligned_cols=253 Identities=13% Similarity=0.041 Sum_probs=134.6
Q ss_pred cceEEEEEcCCCceEEccCCcccceeeeEEEE---CCeEEEEE------------------eecCEEEEEECCCCC--eE
Q psy2979 124 LRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS---GRNTIYCL------------------DIVDIVYVAASMHKI--LH 180 (400)
Q Consensus 124 ~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~---~~~~iyv~------------------~~~~~~~~yd~~~~~--w~ 180 (400)
...+.+.|+.+.+-..+-.+|.....|+++.. ++..+|+. ...+.+-..|..+.+ |+
T Consensus 111 ~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~q 190 (595)
T 1fwx_A 111 NTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQ 190 (595)
T ss_dssp TTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEE
T ss_pred CCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEE
Confidence 45788899999886665567766666777753 34436665 122356677877654 33
Q ss_pred EccCCCCcceeeeEEEE-CCEEEEEcccC-------------------------------C-CCCCCeEEEEeCCCCceE
Q psy2979 181 SLGSLKFDFDVSGIAML-DGFVYAVGGWD-------------------------------G-SCRLDSVERYDPTKNEWS 227 (400)
Q Consensus 181 ~~~~~~~~r~~~~~~~~-~~~iyv~GG~~-------------------------------~-~~~~~~v~~yd~~~~~W~ 227 (400)
-.-. ..| ....+.- ++.+|+..-.+ + ....+.+.+.|..+.+..
T Consensus 191 I~Vg-g~p--d~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~ 267 (595)
T 1fwx_A 191 VLVS-GNL--DNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASS 267 (595)
T ss_dssp EEES-SCC--CCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCC
T ss_pred EEeC-CCc--cceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCc
Confidence 2110 011 0111111 22333332111 0 111345788888874332
Q ss_pred E-ccCCCCcccccEEEEe--CCEEEEEcCccccCCCCcceEEEEeCCCCc-e---------eeccCCCC-CceeeeEEEE
Q psy2979 228 Y-IEPMKLAVTSPAVVAH--EGMLYVTGGAILEDGDGIEQVQRYNPKVNQ-W---------QDLAPMLI-PRSGAAICAL 293 (400)
Q Consensus 228 ~-~~~l~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~-W---------~~~~~~~~-~r~~~~~~~~ 293 (400)
. +..+|.+..-|++..- +..+|+.+.. .+.+..||..+.+ + ..+...+. .+-.|.+..-
T Consensus 268 ~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~-------s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~ 340 (595)
T 1fwx_A 268 LFTRYIPIANNPHGCNMAPDKKHLCVAGKL-------SPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDG 340 (595)
T ss_dssp SSEEEEEEESSCCCEEECTTSSEEEEECTT-------SSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECT
T ss_pred eeEEEEecCCCceEEEEcCCCCEEEEeCCC-------CCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECC
Confidence 2 2334445455655553 4457777766 5689999987552 1 01122222 2334555555
Q ss_pred CCeEEEEcCcCCCCCCCCeEEEEECCC--------CeEEEccCCcCccC-cceEE-------EECCEEEEEcCccCCCCC
Q psy2979 294 DSCIYVLGGWHASTENTNRVECYHIAE--------NTWEYKSPMKEKRY-RPGIA-------VIDGKIYVLGGEEGWDGY 357 (400)
Q Consensus 294 ~~~iyv~GG~~~~~~~~~~v~~yd~~~--------~~W~~~~~~~~~~~-~~~~~-------~~~~~lyv~GG~~~~~~~ 357 (400)
+|.+|+.-.. .+.+..+|..+ +.+..+..++..-. +|... .-+..+|+.-+. +....
T Consensus 341 dG~aY~t~~l------dsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~-skdr~ 413 (595)
T 1fwx_A 341 RGNAYTSLFL------DSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKF-SKDRF 413 (595)
T ss_dssp TSEEEEEETT------TTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESC-CTTSS
T ss_pred CCeEEEEEec------CCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCC-Ccccc
Confidence 6788888765 56788888765 22555554443221 22222 225567777665 32221
Q ss_pred -------CCeEEEEECCCCcEEEecCCCCCCCceeeEEEcccc
Q psy2979 358 -------HDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQIHK 393 (400)
Q Consensus 358 -------~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~~ 393 (400)
-..-..||+++++-+.+...|..-.=|-++++...+
T Consensus 414 ~~~gp~~~~~~ql~dis~~~m~lv~d~p~~~ePh~~~i~~~~~ 456 (595)
T 1fwx_A 414 LNVGPLKPENDQLIDISGDKMVLVHDGPTFAEPHDAIAVHPSI 456 (595)
T ss_dssp CCCCSSCCEEEEEEECSSSSCEEEEEEEESSCCCCEEEECTTT
T ss_pred ccCCCCCCCcceEEEcCCCcEEEEEEEcCCCCCCceEEccHHH
Confidence 123378999999988887666544445666665443
|
| >1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A* | Back alignment and structure |
|---|
Probab=89.33 E-value=19 Score=36.07 Aligned_cols=229 Identities=10% Similarity=0.094 Sum_probs=121.2
Q ss_pred CceEEccCCcccceeeeEEEE---CCeEEEEEeecCEEEEEECCCCCeEEccCCCC-----cceeeeEEEE---CCEEEE
Q psy2979 135 KVWKTLSCLPFAISKHGLVVS---GRNTIYCLDIVDIVYVAASMHKILHSLGSLKF-----DFDVSGIAML---DGFVYA 203 (400)
Q Consensus 135 ~~w~~~~~~~~~~~~~~~~~~---~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~-----~r~~~~~~~~---~~~iyv 203 (400)
.+|+.+...... .-.++++. .+. +|+......+++-+-...+|+.+...+. .+...+++.. .+.+|+
T Consensus 4 ~~W~~~~~~~~g-~i~~i~~~p~~~~~-~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~ 81 (789)
T 1sqj_A 4 YEFKNVAIGGGG-YITGIVAHPKTKDL-LYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYL 81 (789)
T ss_dssp CEEEECCCCBCS-CEEEEEECSSSTTC-EEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEE
T ss_pred ccceEccCCCCC-cEEEEEECCCCCCE-EEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEE
Confidence 468887653322 22344443 244 7776555668887777788999765332 1223334433 246888
Q ss_pred EcccCCCCCCCeEEEEeCCCCceEEccC-CCC-----cc-cccEEEEe---CCEEEEEcCccccCCCCcceEEEEeCCCC
Q psy2979 204 VGGWDGSCRLDSVERYDPTKNEWSYIEP-MKL-----AV-TSPAVVAH---EGMLYVTGGAILEDGDGIEQVQRYNPKVN 273 (400)
Q Consensus 204 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~-l~~-----~~-~~~~~~~~---~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 273 (400)
..|.........+++=+-.-.+|+.+.. ++. .+ ..+.+++. .+.+|+ |.. ...+++=+-...
T Consensus 82 ~~g~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~-g~~-------~~gl~~S~DgG~ 153 (789)
T 1sqj_A 82 AQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWM-GTR-------TEGIWKSSDRAK 153 (789)
T ss_dssp EECSCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEE-ECS-------SSCEEEESSTTS
T ss_pred EeCccCCCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEE-Eec-------cCCEEEECCCCc
Confidence 7664221111345544445668998853 111 12 12334443 356666 332 124666555568
Q ss_pred ceeeccCCCC---CceeeeEEEE----CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCcc-------------
Q psy2979 274 QWQDLAPMLI---PRSGAAICAL----DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKR------------- 333 (400)
Q Consensus 274 ~W~~~~~~~~---~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~------------- 333 (400)
+|+.+..++. .-.....+.+ .+.||+..... ..+++=.-.-.+|+.+..+|...
T Consensus 154 TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~------~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~~~ 227 (789)
T 1sqj_A 154 TWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATAP------QGMYVTHDGGVSWEPVAGQPSSWLNRTTGAFPDKKP 227 (789)
T ss_dssp SCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEESST------TCEEEESSTTSSCEECTTCCCSCCHHHHHTSTTCCC
T ss_pred ccCCCccCccccCCCCCeEEEEECCCCCCEEEEEEcCC------CeEEEEcCCCcCcccCCCCcCccccccccccCcccc
Confidence 8999876441 1122223332 24677765321 23444333355799987555322
Q ss_pred ---CcceEEEE--CCEEEEEcCccCC--CCCCCeEEEEECCCCcEEEecCCCC
Q psy2979 334 ---YRPGIAVI--DGKIYVLGGEEGW--DGYHDSIECYDVDNDSWEIMSHLPS 379 (400)
Q Consensus 334 ---~~~~~~~~--~~~lyv~GG~~~~--~~~~~~v~~yd~~~~~W~~~~~~~~ 379 (400)
..+.+++. .+.||+..+.... ......+++.+-...+|+.+...|.
T Consensus 228 ~~~~~~~~~~~p~~~~l~~~~~~~~~p~~g~~g~l~~S~DgG~tW~~~~~~~~ 280 (789)
T 1sqj_A 228 ASIAPQPMKVALTPNFLYVTYADYPGPWGVTFGEVWRQNRTSGAWDDITPRVG 280 (789)
T ss_dssp SSSSCEEEEEEECSSEEEEEEESSCSSSCCCCCCEEEEETTTCCEEECCCCTT
T ss_pred cccccceeEEcCCCCeEEEEEecCCCCCCCCCceEEEEeCCCCceEECcCCCC
Confidence 00333222 7889998422000 0124578899888899999976543
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=88.73 E-value=12 Score=32.92 Aligned_cols=183 Identities=17% Similarity=0.134 Sum_probs=92.6
Q ss_pred eeeEEEEC-CeEEEEEee------cCEEEEEECCCCCeEEccCCC----Cc-ceeeeEEEE--CCEEEEEcccCCCCCCC
Q psy2979 149 KHGLVVSG-RNTIYCLDI------VDIVYVAASMHKILHSLGSLK----FD-FDVSGIAML--DGFVYAVGGWDGSCRLD 214 (400)
Q Consensus 149 ~~~~~~~~-~~~iyv~~~------~~~~~~yd~~~~~w~~~~~~~----~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~ 214 (400)
-+++++-. +. ||++.. ...+..||+.+++....-.++ .+ ..-..+++- ++.+|+..-.. ....
T Consensus 69 p~gv~~d~~g~-L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~--~~~~ 145 (343)
T 2qe8_A 69 VLGIKSDGNGI-VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAP--DDKA 145 (343)
T ss_dssp EEEEEECSSSE-EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCS--GGGC
T ss_pred eeEEEEcCCCc-EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCcc--CCCC
Confidence 35566553 56 999854 368999999988743221221 11 111334444 46899873210 0235
Q ss_pred eEEEEeCCCCc-eEEccC---C-CCc-------c----------------cccEEEEe-CC-EEEEEcCccccCCCCcce
Q psy2979 215 SVERYDPTKNE-WSYIEP---M-KLA-------V----------------TSPAVVAH-EG-MLYVTGGAILEDGDGIEQ 264 (400)
Q Consensus 215 ~v~~yd~~~~~-W~~~~~---l-~~~-------~----------------~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~ 264 (400)
.+.+||+.+++ |..+.. + +.+ . .-.+++.- ++ .+|+.-.. ...
T Consensus 146 ~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~-------~~~ 218 (343)
T 2qe8_A 146 ALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMH-------STS 218 (343)
T ss_dssp EEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESS-------CSE
T ss_pred eEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCC-------CCe
Confidence 68899998664 554422 1 100 0 00111111 22 45554322 235
Q ss_pred EEEEeCCC--C-c------e---eeccCCCCCceeeeEEE-ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcC
Q psy2979 265 VQRYNPKV--N-Q------W---QDLAPMLIPRSGAAICA-LDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKE 331 (400)
Q Consensus 265 v~~yd~~~--~-~------W---~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 331 (400)
+++++... + . + ......+. --+++. -++.||+..-. .+.|.+||++++++..+...|.
T Consensus 219 l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~---pdgia~d~~G~l~va~~~------~~~V~~~d~~~G~~~~~~~~~~ 289 (343)
T 2qe8_A 219 MYRIKSADLSNLQLTDAELGSKIERYSEKPI---CDGISIDKDHNIYVGDLA------HSAIGVITSADRAYKLLVTDEK 289 (343)
T ss_dssp EEEEEHHHHTCTTCCHHHHHTTCEEEEECCS---CSCEEECTTCCEEEEEGG------GTEEEEEETTTTEEEEEEECGG
T ss_pred EEEEEHHHhcCCCCChhhhhcceEecccCCC---CceEEECCCCCEEEEccC------CCeEEEEECCCCCEEEEEECCc
Confidence 67776421 0 0 0 01011111 112332 26788888644 5689999996677766654441
Q ss_pred ccCcceEEEE--CCEEEEEcCc
Q psy2979 332 KRYRPGIAVI--DGKIYVLGGE 351 (400)
Q Consensus 332 ~~~~~~~~~~--~~~lyv~GG~ 351 (400)
...+..+++ ++++|+....
T Consensus 290 -~~~p~~va~~~~g~l~v~~~~ 310 (343)
T 2qe8_A 290 -LSWTDSFNFGSDGYLYFDCNQ 310 (343)
T ss_dssp -GSCEEEEEECTTSCEEEEECC
T ss_pred -eecCCeeEECCCCcEEEEeCc
Confidence 233444455 6889998653
|
| >1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A | Back alignment and structure |
|---|
Probab=87.80 E-value=10 Score=31.13 Aligned_cols=146 Identities=14% Similarity=0.094 Sum_probs=78.8
Q ss_pred eeEEEECCeEEEEEeecCEEEEEECCCCC-eE--Ec----cCCCCcceeeeEEE-ECCEEEEEcccCCCCCCCeEEEEeC
Q psy2979 150 HGLVVSGRNTIYCLDIVDIVYVAASMHKI-LH--SL----GSLKFDFDVSGIAM-LDGFVYAVGGWDGSCRLDSVERYDP 221 (400)
Q Consensus 150 ~~~~~~~~~~iyv~~~~~~~~~yd~~~~~-w~--~~----~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~ 221 (400)
-+++...+. +|++.. +.+|.++..... .. .+ +.+|. .-..+... .++++|++-| +..++||.
T Consensus 34 DAi~~~~g~-~~fFkg-~~~Wr~~~~~~~~~~P~~I~~~wp~lp~-~IDAA~~~~~~~k~yfFkG-------~~yW~y~~ 103 (218)
T 1gen_A 34 DGIAQIRGE-IFFFKD-RFIWRTVTPRDKPMGPLLVATFWPELPE-KIDAVYEAPQEEKAVFFAG-------NEYWIYSA 103 (218)
T ss_dssp SEEEEETTE-EEEEET-TEEEEESSTTSCCEEEEEGGGTCTTSCS-CCSEEEEETTTTEEEEEET-------TEEEEEET
T ss_pred eEEEeCCCc-EEEEEC-CEEEEEeCCCCccCCCEEHHHhcCCCCC-CccEEEEECCCCEEEEEeC-------CEEEEEcC
Confidence 345556777 888733 566776654321 11 12 12232 12222221 2689999977 66889985
Q ss_pred CCCc---eEEcc--CCCCcccc-cEEEE--eCCEEEEEcCccccCCCCcceEEEEeCCCCceeec-----c-C-CCCCce
Q psy2979 222 TKNE---WSYIE--PMKLAVTS-PAVVA--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDL-----A-P-MLIPRS 286 (400)
Q Consensus 222 ~~~~---W~~~~--~l~~~~~~-~~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~-----~-~-~~~~r~ 286 (400)
.+-. =..+. .+|..... -++.. .++++|++-|. ..|+||..+++-... . . +..+..
T Consensus 104 ~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG~---------~ywr~d~~~~~v~~gyPr~i~~~w~g~p~~ 174 (218)
T 1gen_A 104 STLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGD---------KFWRYNEVKKKMDPGFPKLIADAWNAIPDN 174 (218)
T ss_dssp TEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEETT---------EEEEEETTTTEECSSCCEEHHHHSSSCCSS
T ss_pred ccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEECC---------EEEEEECccccccCCCCcchhhccCCCCCC
Confidence 3100 01111 12221111 23333 37899999886 799999877643221 1 0 112223
Q ss_pred eeeEEEEC--CeEEEEcCcCCCCCCCCeEEEEECCCCe
Q psy2979 287 GAAICALD--SCIYVLGGWHASTENTNRVECYHIAENT 322 (400)
Q Consensus 287 ~~~~~~~~--~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 322 (400)
.-++...+ +.+|.+-|. ..++||..+..
T Consensus 175 idaAf~~~~~g~~YfFkg~--------~y~~~~~~~~~ 204 (218)
T 1gen_A 175 LDAVVDLQGGGHSYFFKGA--------YYLKLENQSLK 204 (218)
T ss_dssp CSEEEECTTTCEEEEEETT--------EEEEEETTEEE
T ss_pred CCEEEEEcCCCcEEEEECC--------EEEEEECCcee
Confidence 34455554 899999864 78999986554
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=87.74 E-value=14 Score=32.56 Aligned_cols=205 Identities=9% Similarity=0.063 Sum_probs=103.0
Q ss_pred ceEEEEEcCCCceEEccCCcc-------cceeeeEEEE----CCeEEEEE-e-------------ecCEEEEEECC---C
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPF-------AISKHGLVVS----GRNTIYCL-D-------------IVDIVYVAASM---H 176 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~-------~~~~~~~~~~----~~~~iyv~-~-------------~~~~~~~yd~~---~ 176 (400)
..+..+|+..+.-..+ .+|. .....++.+. ++. |+++ . ....+..||+. +
T Consensus 35 g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~gr-L~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~t 112 (334)
T 2p9w_A 35 GRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKR-LFAVMKNAKSFNFADQSSHGASSFHSFNLPLSEN 112 (334)
T ss_dssp TEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCE-EEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTT
T ss_pred CEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCc-EEEEEcccccccccccccCCCCEEEEEcCCcCCC
Confidence 5788888886654444 2221 1223455552 445 7775 2 14679999988 4
Q ss_pred CC--eEE-ccCCCCc-------cee-e-eEEE-ECCEEEEEcccCCCCCCCeEEEEeCCCCc---eEEccCCCCccccc-
Q psy2979 177 KI--LHS-LGSLKFD-------FDV-S-GIAM-LDGFVYAVGGWDGSCRLDSVERYDPTKNE---WSYIEPMKLAVTSP- 239 (400)
Q Consensus 177 ~~--w~~-~~~~~~~-------r~~-~-~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~---W~~~~~l~~~~~~~- 239 (400)
++ |.. ++..... +.. . -+++ -+|.+||.+.... ..++++++.... |-.-.+....+.+.
T Consensus 113 g~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~----~~I~rV~pdG~~~~~~~~~~~~~~~~~G~n 188 (334)
T 2p9w_A 113 SKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGM----PAIARVSADGKTVSTFAWESGNGGQRPGYS 188 (334)
T ss_dssp CCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESS----CEEEEECTTSCCEEEEEECCCCSSSCCSCS
T ss_pred CCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCC----CeEEEEeCCCCEEeeeeecCCCcccccCcc
Confidence 43 432 2111111 211 1 1222 2679999765331 469999998653 53323223334333
Q ss_pred EEEEe-CC-EEEEEcCccccCCCCcceEEEEeCCCCceeeccC--------CCCCceeeeEEEECCeEEEEcCcCCCCCC
Q psy2979 240 AVVAH-EG-MLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAP--------MLIPRSGAAICALDSCIYVLGGWHASTEN 309 (400)
Q Consensus 240 ~~~~~-~~-~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~--------~~~~r~~~~~~~~~~~iyv~GG~~~~~~~ 309 (400)
+.+.. ++ .+++..+. ..+++||..+.....++. +..+ ...-..-.+|++.++...
T Consensus 189 GIv~~pdg~~Liv~~~~--------g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~-dgilp~~~~G~vllV~~~------ 253 (334)
T 2p9w_A 189 GITFDPHSNKLIAFGGP--------RALTAFDVSKPYAWPEPVKINGDFGTLSGT-EKIVTVPVGNESVLVGAR------ 253 (334)
T ss_dssp EEEEETTTTEEEEESSS--------SSEEEEECSSSSCCCEECEESSCCCCCTTE-EEEEEEEETTEEEEEEEE------
T ss_pred eEEEeCCCCEEEEEcCC--------CeEEEEcCCCCcceeecccccCCcccccCc-ccccccccCCEEEEEEcC------
Confidence 45555 34 55555432 368999987433211211 1111 111223368888555532
Q ss_pred CCeEEEEECCCCeEEEcc---CCcC---ccCcceEEE----ECCEEEEEcCc
Q psy2979 310 TNRVECYHIAENTWEYKS---PMKE---KRYRPGIAV----IDGKIYVLGGE 351 (400)
Q Consensus 310 ~~~v~~yd~~~~~W~~~~---~~~~---~~~~~~~~~----~~~~lyv~GG~ 351 (400)
.+.+..+-...+ |.... ..|. .......++ .+++||++.+.
T Consensus 254 ~~~~~~l~S~Dg-W~sa~~~g~~~~~~~~~g~tt~t~~~~~~~~~iYvv~~~ 304 (334)
T 2p9w_A 254 APYAISFRSWDN-WKSANIKKTKRSELQNSGFTAVADYYQGSEQGLYAVSAF 304 (334)
T ss_dssp TTEEEEEECSST-TSEEEEEEEECGGGGSSCEEEEEEEEETTEEEEEEEECC
T ss_pred CCCEEEEECCCC-cceeEEeeeecCccccCceeEEEEeccccCCeEEEEeee
Confidence 233444444444 86643 2221 222233334 47899999765
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.64 E-value=16 Score=33.07 Aligned_cols=106 Identities=11% Similarity=0.126 Sum_probs=58.6
Q ss_pred CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCe
Q psy2979 245 EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENT 322 (400)
Q Consensus 245 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 322 (400)
++.+++.|+. ++ .+..||..+.+-...-..+........+.. ++..++.|+. ...+..||..+++
T Consensus 181 ~~~~l~~~~~---d~----~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~------dg~i~iwd~~~~~ 247 (437)
T 3gre_A 181 EKSLLVALTN---LS----RVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTT------RGIIDIWDIRFNV 247 (437)
T ss_dssp SCEEEEEEET---TS----EEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEET------TSCEEEEETTTTE
T ss_pred CCCEEEEEeC---CC----eEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcC------CCeEEEEEcCCcc
Confidence 4777788877 43 799999977653222111101111222223 6777777776 4579999998876
Q ss_pred EEEccCCcCccCcceEEEE------CCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 323 WEYKSPMKEKRYRPGIAVI------DGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 323 W~~~~~~~~~~~~~~~~~~------~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
....-..+... ....+.. ++++++.|+. + ..|.+||..+++
T Consensus 248 ~~~~~~~~~~~-~v~~~~~~~~~s~~~~~l~s~~~-d-----g~i~iwd~~~~~ 294 (437)
T 3gre_A 248 LIRSWSFGDHA-PITHVEVCQFYGKNSVIVVGGSS-K-----TFLTIWNFVKGH 294 (437)
T ss_dssp EEEEEBCTTCE-EEEEEEECTTTCTTEEEEEEEST-T-----EEEEEEETTTTE
T ss_pred EEEEEecCCCC-ceEEEEeccccCCCccEEEEEcC-C-----CcEEEEEcCCCc
Confidence 54321111111 1111111 3556666765 2 468899998765
|
| >1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=87.60 E-value=5.3 Score=32.92 Aligned_cols=97 Identities=13% Similarity=0.232 Sum_probs=57.3
Q ss_pred eCCEEEEEcCccccCCCCcceEEEEeCCCCcee--ecc----CCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEE
Q psy2979 244 HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQ--DLA----PMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYH 317 (400)
Q Consensus 244 ~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~--~~~----~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd 317 (400)
.+|++|++-|. ..|+++.....+. .+. .+|. .-=++...++++|++-|. .+|+|+
T Consensus 27 ~~g~~yfFkg~---------~~Wr~~~~~~~~~p~~Is~~wpgLP~--~IDAA~~~~~~~yfFkG~--------~yw~~~ 87 (219)
T 1hxn_A 27 NHGATYVFSGS---------HYWRLDTNRDGWHSWPIAHQWPQGPS--TVDAAFSWEDKLYLIQDT--------KVYVFL 87 (219)
T ss_dssp TTSCEEEEETT---------EEEESSSSSCTTCCEEGGGTCTTSCS--SCSEEEEETTEEEEEETT--------EEEEEE
T ss_pred CCCcEEEEeCC---------EEEEEcCCCCCCCceEhhhhccCCCC--CccEEEEECCcEEEecCC--------EEEEEe
Confidence 58999999886 6888876543321 111 2332 222344458999999763 799998
Q ss_pred CCCCeEEEcc----------CCcCc--cCcceEEEE---CCEEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 318 IAENTWEYKS----------PMKEK--RYRPGIAVI---DGKIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 318 ~~~~~W~~~~----------~~~~~--~~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
..++. +..+ .+|.. ....-++.. ++++|++-|. ..|+||..+
T Consensus 88 ~~~~~-~~~~gyPk~i~~~~G~p~~~~~~~IDAA~~~~~~gk~yfFkG~--------~ywr~d~~~ 144 (219)
T 1hxn_A 88 TKGGY-TLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAGR--------RLWWLDLKS 144 (219)
T ss_dssp CSSSC-EECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEETT--------EEEEEEGGG
T ss_pred CCCCc-eecCCCCeehhhccCCCCcccccccceeEEecCCCEEEEEeCC--------EEEEEeCCC
Confidence 75421 1121 12222 111223332 5899999886 679999654
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=86.98 E-value=21 Score=33.69 Aligned_cols=175 Identities=13% Similarity=0.086 Sum_probs=86.5
Q ss_pred eecCEEEEEECCCCCeEEccCCCCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEE
Q psy2979 164 DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVV 242 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~ 242 (400)
.....+..+|.....-..+..... .-.+++.. +++.++.|+.+ ..+..||.....-..+.....+.. ..+.
T Consensus 322 ~~d~~i~~w~~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~~~~~d-----g~v~~~~~~~~~~~~~~~~~~~v~-~~~~ 393 (577)
T 2ymu_A 322 SDDKTVKLWNRNGQHLQTLTGHSS--SVWGVAFSPDGQTIASASDD-----KTVKLWNRNGQLLQTLTGHSSSVR-GVAF 393 (577)
T ss_dssp ETTSCEEEEETTSCEEEEECCCSS--CEEEEEECTTSSEEEEEETT-----SEEEEEETTCCEEEEEECCSSCEE-EEEE
T ss_pred eCCCeEEEEeCCCCeeEEEeCCCC--CEEEEEECCCCCEEEEEeCC-----CEEEEEcCCCCEEEEecCCCCCeE-EEEE
Confidence 344556677766544333322111 11122222 55666666654 357778865544333332221111 1111
Q ss_pred EeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEE-ECCeEEEEcCcCCCCCCCCeEEEEECCCC
Q psy2979 243 AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICA-LDSCIYVLGGWHASTENTNRVECYHIAEN 321 (400)
Q Consensus 243 ~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~ 321 (400)
.-+++.++.|+. ++ .+..||.....-..+.....+ -.+++. -+++.++.++. ...+..||....
T Consensus 394 s~dg~~l~~~~~---d~----~v~~~~~~~~~~~~~~~~~~~--v~~~~~s~d~~~l~~~~~------d~~v~~w~~~~~ 458 (577)
T 2ymu_A 394 SPDGQTIASASD---DK----TVKLWNRNGQLLQTLTGHSSS--VWGVAFSPDDQTIASASD------DKTVKLWNRNGQ 458 (577)
T ss_dssp CTTSSCEEEEET---TS----EEEEECTTCCEEEEEECCSSC--EEEEEECTTSSEEEEEET------TSEEEEEETTSC
T ss_pred CCCCCEEEEEeC---CC----EEEEEeCCCCEEEEecCCCCC--eEEEEECCCCCEEEEEcC------CCEEEEEECCCC
Confidence 236677777776 43 688888654433333221111 112222 26677777765 457888887665
Q ss_pred eEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 322 TWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 322 ~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
.-..+.... .....+.+ ++++++.|+. + ..|.+||.....
T Consensus 459 ~~~~~~~~~---~~v~~~~~spd~~~las~~~-d-----~~i~iw~~~~~~ 500 (577)
T 2ymu_A 459 LLQTLTGHS---SSVRGVAFSPDGQTIASASD-D-----KTVKLWNRNGQL 500 (577)
T ss_dssp EEEEEECCS---SCEEEEEECTTSCEEEEEET-T-----SEEEEEETTSCE
T ss_pred EEEEEcCCC---CCEEEEEEcCCCCEEEEEeC-C-----CEEEEEcCCCCE
Confidence 544443222 11122333 6777777765 2 367788865443
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=86.59 E-value=17 Score=32.27 Aligned_cols=178 Identities=11% Similarity=-0.030 Sum_probs=91.4
Q ss_pred cCEEEEEECCCCCeEEccCCCCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcc--cccEEE
Q psy2979 166 VDIVYVAASMHKILHSLGSLKFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAV--TSPAVV 242 (400)
Q Consensus 166 ~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~--~~~~~~ 242 (400)
...+..+|+.+.+...... ....-.+++.- ++++++.|+. ..+.+++..+++........... ......
T Consensus 156 d~~i~iwd~~~~~~~~~~~--~~~~V~~v~fspdg~~l~s~s~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~f 227 (365)
T 4h5i_A 156 PAIMRIIDPSDLTEKFEIE--TRGEVKDLHFSTDGKVVAYITG------SSLEVISTVTGSCIARKTDFDKNWSLSKINF 227 (365)
T ss_dssp SCEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSSEEEEECS------SCEEEEETTTCCEEEEECCCCTTEEEEEEEE
T ss_pred CCEEEEeECCCCcEEEEeC--CCCceEEEEEccCCceEEeccc------eeEEEEEeccCcceeeeecCCCCCCEEEEEE
Confidence 3567888888765433221 11111122222 5566665542 34677777777654332222111 111222
Q ss_pred EeCCEEEEEcCccccCCCCcceEEEEeCCCCceeecc--CCCCCceeeeEEE--ECCeEEEEcCcCCCCCCCCeEEEEEC
Q psy2979 243 AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLA--PMLIPRSGAAICA--LDSCIYVLGGWHASTENTNRVECYHI 318 (400)
Q Consensus 243 ~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~ 318 (400)
.-++..++.++. ++.....++.+|.....+.... .+........++. -++++++.|+. ..+|..||.
T Consensus 228 spdg~~l~~~s~---d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~------D~~V~iwd~ 298 (365)
T 4h5i_A 228 IADDTVLIAASL---KKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASN------DNSIALVKL 298 (365)
T ss_dssp EETTEEEEEEEE---SSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEET------TSCEEEEET
T ss_pred cCCCCEEEEEec---CCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcC------CCEEEEEEC
Confidence 347888887766 4432235666776655544322 1111111112222 27888888876 457999999
Q ss_pred CCCeEEEccCCcCccCc-ceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 319 AENTWEYKSPMKEKRYR-PGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 319 ~~~~W~~~~~~~~~~~~-~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
.+.+-.. ....++.. -..+.+ ++++++.|+. + ..|-++|+..
T Consensus 299 ~~~~~~~--~~~~gH~~~V~~v~fSpdg~~laS~S~-D-----~tvrvw~ip~ 343 (365)
T 4h5i_A 299 KDLSMSK--IFKQAHSFAITEVTISPDSTYVASVSA-A-----NTIHIIKLPL 343 (365)
T ss_dssp TTTEEEE--EETTSSSSCEEEEEECTTSCEEEEEET-T-----SEEEEEECCT
T ss_pred CCCcEEE--EecCcccCCEEEEEECCCCCEEEEEeC-C-----CeEEEEEcCC
Confidence 8876332 11111111 123333 7888888876 3 4677888644
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.50 E-value=0.36 Score=43.64 Aligned_cols=66 Identities=8% Similarity=0.024 Sum_probs=33.1
Q ss_pred EEeCCEEEEEcCccccCCCCcceEEEEeCCCCc--eeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECC
Q psy2979 242 VAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ--WQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIA 319 (400)
Q Consensus 242 ~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~ 319 (400)
++.++.+|+.+.. ..++++|..+.+ |+.-. .. .....+..++.+|+.++. ...++++|.+
T Consensus 6 ~v~~~~v~~gs~d--------g~v~a~d~~tG~~~W~~~~--~~--~~s~p~~~~g~~~v~~s~------dg~l~a~d~~ 67 (369)
T 2hz6_A 6 TLPETLLFVSTLD--------GSLHAVSKRTGSIKWTLKE--DP--VLQVPTHVEEPAFLPDPN------DGSLYTLGSK 67 (369)
T ss_dssp --CTTEEEEEETT--------SEEEEEETTTCCEEEEEEC--CC--SCCCC-----CCEEECTT------TCCEEEC---
T ss_pred eeeCCEEEEEcCC--------CEEEEEECCCCCEEEEecC--CC--ceecceEcCCCEEEEeCC------CCEEEEEECC
Confidence 4456777765432 378999987665 87643 11 112233456778887654 4578999986
Q ss_pred CC--eEEE
Q psy2979 320 EN--TWEY 325 (400)
Q Consensus 320 ~~--~W~~ 325 (400)
++ .|..
T Consensus 68 tG~~~w~~ 75 (369)
T 2hz6_A 68 NNEGLTKL 75 (369)
T ss_dssp --CCSEEC
T ss_pred CCceeeee
Confidence 55 4653
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=85.83 E-value=18 Score=33.22 Aligned_cols=142 Identities=15% Similarity=0.110 Sum_probs=75.8
Q ss_pred CEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEE-EeCCEEEEEcCccccCCCCcceEEEEeCCCCcee-
Q psy2979 199 GFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVV-AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQ- 276 (400)
Q Consensus 199 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~- 276 (400)
+.||+.-.. ..+.++|+.+++...+.. +..+. ..++ .-++.||+.... .......+..+++... |.
T Consensus 153 g~Lyv~D~~------~~I~~id~~~g~v~~~~~-~~~~P-~giavd~dG~lyVad~~---~~~~~~gv~~~~~~~~-~~~ 220 (433)
T 4hw6_A 153 DDLYWVGQR------DAFRHVDFVNQYVDIKTT-NIGQC-ADVNFTLNGDMVVVDDQ---SSDTNTGIYLFTRASG-FTE 220 (433)
T ss_dssp CEEEEECBT------SCEEEEETTTTEEEEECC-CCSCE-EEEEECTTCCEEEEECC---SCTTSEEEEEECGGGT-TCC
T ss_pred CEEEEEeCC------CCEEEEECCCCEEEEeec-CCCCc-cEEEECCCCCEEEEcCC---CCcccceEEEEECCCC-eec
Confidence 789997331 679999999888877654 11111 1222 235669998542 1111234666665322 22
Q ss_pred --eccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeE-EEccCCcCccCcceEEEE-C-CEEEEEc
Q psy2979 277 --DLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTW-EYKSPMKEKRYRPGIAVI-D-GKIYVLG 349 (400)
Q Consensus 277 --~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~~~~~~~~~~-~-~~lyv~G 349 (400)
.++.+..| .++++. ++.||+.... ...+++||+.++.- ..+...........++.- + +.||+.-
T Consensus 221 ~~~~~~~~~P---~giavd~~~G~lyv~d~~------~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad 291 (433)
T 4hw6_A 221 RLSLCNARGA---KTCAVHPQNGKIYYTRYH------HAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIY 291 (433)
T ss_dssp EEEEEECSSB---CCCEECTTTCCEEECBTT------CSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEE
T ss_pred cccccccCCC---CEEEEeCCCCeEEEEECC------CCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEe
Confidence 22222222 233333 6789987643 46899999986654 232211111111223322 3 4599975
Q ss_pred CccCCCCCCCeEEEEECC
Q psy2979 350 GEEGWDGYHDSIECYDVD 367 (400)
Q Consensus 350 G~~~~~~~~~~v~~yd~~ 367 (400)
-. .+.|+++|+.
T Consensus 292 ~~------~~~I~~~~~d 303 (433)
T 4hw6_A 292 NG------KHCIYRVDYN 303 (433)
T ss_dssp TT------TTEEEEEEBC
T ss_pred CC------CCEEEEEeCC
Confidence 33 3578886654
|
| >1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A | Back alignment and structure |
|---|
Probab=85.80 E-value=3.7 Score=39.78 Aligned_cols=144 Identities=12% Similarity=0.152 Sum_probs=76.4
Q ss_pred eEEEECCEEEEEcccCCCCCCCeEEEEeCCCC-ceE--Ec----cCCCCcccccEEEE-eCCEEEEEcCccccCCCCcce
Q psy2979 193 GIAMLDGFVYAVGGWDGSCRLDSVERYDPTKN-EWS--YI----EPMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQ 264 (400)
Q Consensus 193 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~-~W~--~~----~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~ 264 (400)
+++..++.+|++-| +.+|+++.... ... .+ +.+|... ..+... .++++|++-|. .
T Consensus 448 Ait~~rg~~yfFKg-------~~yWr~~~~~~~~~~P~~Is~~wp~LP~~I-DAA~~~~~~~k~yFFkG~---------~ 510 (631)
T 1ck7_A 448 GIAQIRGEIFFFKD-------RFIWRTVTPRDKPMGPLLVATFWPELPEKI-DAVYEAPQEEKAVFFAGN---------E 510 (631)
T ss_dssp EEEECSSSEEEECS-------SEEEEESCTTSCCEEEEEGGGTCTTSCSSC-SBCCEETTTTEEEEEETT---------E
T ss_pred eeEecCCcEEEEcC-------CEEEEEcCCCCCCCCceeccccCCCCCccc-eEEEEECCCCEEEEEecC---------E
Confidence 45556888999977 45777765542 111 11 2344322 222222 36889999876 6
Q ss_pred EEEEeCCCCc--e-eeccC--CCCC-ceeeeEEE--ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEE-----Ecc-CCc
Q psy2979 265 VQRYNPKVNQ--W-QDLAP--MLIP-RSGAAICA--LDSCIYVLGGWHASTENTNRVECYHIAENTWE-----YKS-PMK 330 (400)
Q Consensus 265 v~~yd~~~~~--W-~~~~~--~~~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~-----~~~-~~~ 330 (400)
.|+|+..+.. + ..+.. +|.. ..--++.. .++++|++-|. ..|+||..+++-. .+. ..+
T Consensus 511 yWry~~~~l~~GYPk~Is~~G~P~~~~~IDAAf~~~~~gktYFFkG~--------~ywryd~~~~~vd~gYPk~i~~~w~ 582 (631)
T 1ck7_A 511 YWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGD--------KFWRYNEVKKKMDPGFPKLIADAWN 582 (631)
T ss_dssp EEEEETTEECTTCCEEGGGGTCCTTCCCCCBCCCCTTTCEEEEEETT--------EEEEEETTTTEECTTCCEETTTSCS
T ss_pred EEEECCCccccCCCccchhcCCCCCCCcceeEEEecCCCeEEEEECC--------EEEEEcCCcccccCCCCcchHhhcC
Confidence 8999853110 0 11111 1211 01112222 36899999864 8999998766421 111 111
Q ss_pred -CccCcceEEEEC--CEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 331 -EKRYRPGIAVID--GKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 331 -~~~~~~~~~~~~--~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
.+...-++...+ |++|++-|. ..|+||..+.
T Consensus 583 G~p~~iDAAf~~~~~g~~YFFkG~--------~Ywr~d~~~~ 616 (631)
T 1ck7_A 583 AIPDNLDAVVDLQGGGHSYFFKGA--------YYLKLENQSL 616 (631)
T ss_dssp SCCTTCCEEECCTTSCBCEEEETT--------EEECCBTTBT
T ss_pred CCCCCCcEeEEEcCCCeEEEEECC--------EEEEEeCccc
Confidence 122222333333 899999886 5688887654
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=85.47 E-value=6.9 Score=37.53 Aligned_cols=208 Identities=10% Similarity=0.018 Sum_probs=110.2
Q ss_pred cceeeeEEEE-----CCeEEEEE-eecCEEEEEECCCCCeEEccCCCCcceeeeEEEE----CCEEEEEcccCC------
Q psy2979 146 AISKHGLVVS-----GRNTIYCL-DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML----DGFVYAVGGWDG------ 209 (400)
Q Consensus 146 ~~~~~~~~~~-----~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~----~~~iyv~GG~~~------ 209 (400)
....|-.... ++..+|+. ...+++...|+.+.+-..+-.+|....-++++.. .+.+|+.+....
T Consensus 85 gd~hh~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg 164 (595)
T 1fwx_A 85 GDLHHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDG 164 (595)
T ss_dssp CCBCCEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSS
T ss_pred CCCCccccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCC
Confidence 3344544444 45547776 5566799999999876654466655555565542 467887753321
Q ss_pred ------CCCCCeEEEEeCCCCc--eEEccCCCCcccccEEEE-eCCEEEEEcCcc-------------------------
Q psy2979 210 ------SCRLDSVERYDPTKNE--WSYIEPMKLAVTSPAVVA-HEGMLYVTGGAI------------------------- 255 (400)
Q Consensus 210 ------~~~~~~v~~yd~~~~~--W~~~~~l~~~~~~~~~~~-~~~~iyv~GG~~------------------------- 255 (400)
....+.+...|..+.+ |+..-+ . ......+. -++.+|+..-.+
T Consensus 165 ~~l~~~~~~~~~vtvID~~t~~v~~qI~Vg--g-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~ 241 (595)
T 1fwx_A 165 TNMEDVANYVNVFTAVDADKWEVAWQVLVS--G-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEI 241 (595)
T ss_dssp SSTTCGGGEEEEEEEEETTTTEEEEEEEES--S-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHH
T ss_pred cccccccccCceEEEEECCCCeEEEEEEeC--C-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccce
Confidence 1233567888988763 543311 1 11111221 133344433110
Q ss_pred ---ccCCCC--cceEEEEeCCCCceee-ccCCCCCceeeeEEEE-CC-eEEEEcCcCCCCCCCCeEEEEECCCCe-E---
Q psy2979 256 ---LEDGDG--IEQVQRYNPKVNQWQD-LAPMLIPRSGAAICAL-DS-CIYVLGGWHASTENTNRVECYHIAENT-W--- 323 (400)
Q Consensus 256 ---~~~~~~--~~~v~~yd~~~~~W~~-~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~-W--- 323 (400)
..+|.. .+.+-..|+.+.+... +...|.+..-|++..- +| .+|+.+.. .+.+..||..+.+ +
T Consensus 242 ~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~------s~~VsVid~~~~~~~~~~ 315 (595)
T 1fwx_A 242 EKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKL------SPTVTVLDVTRFDAVFYE 315 (595)
T ss_dssp HHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTT------SSBEEEEEGGGHHHHHHS
T ss_pred eEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCC------CCeEEEEECccccccccc
Confidence 011222 4457888888743333 2334445555666666 44 56666655 6789999998652 1
Q ss_pred ------EEccCCcCcc-CcceEEEECCEEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 324 ------EYKSPMKEKR-YRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 324 ------~~~~~~~~~~-~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
......+.+. -.|.+..-+|.+|+.-.. .++|..||..+
T Consensus 316 ~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~l------dsqV~kwdi~~ 361 (595)
T 1fwx_A 316 NADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFL------DSQVVKWNIED 361 (595)
T ss_dssp CCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETT------TTEEEEEEHHH
T ss_pred ccCcccceEEEcCCCCCcceEEECCCCeEEEEEec------CCcEEEEEhhH
Confidence 0112223221 222222225788887665 34667777655
|
| >1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=85.12 E-value=15 Score=30.25 Aligned_cols=136 Identities=21% Similarity=0.267 Sum_probs=75.0
Q ss_pred ECCEEEEEcccCCCCCCCeEEEEeCCCCce--EEc----cCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeC
Q psy2979 197 LDGFVYAVGGWDGSCRLDSVERYDPTKNEW--SYI----EPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNP 270 (400)
Q Consensus 197 ~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W--~~~----~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~ 270 (400)
.++++|++=| ...++++.....+ ..+ +.||... . ++...++++|++-|. .+|+|+.
T Consensus 27 ~~g~~yfFkg-------~~~Wr~~~~~~~~~p~~Is~~wpgLP~~I-D-AA~~~~~~~yfFkG~---------~yw~~~~ 88 (219)
T 1hxn_A 27 NHGATYVFSG-------SHYWRLDTNRDGWHSWPIAHQWPQGPSTV-D-AAFSWEDKLYLIQDT---------KVYVFLT 88 (219)
T ss_dssp TTSCEEEEET-------TEEEESSSSSCTTCCEEGGGTCTTSCSSC-S-EEEEETTEEEEEETT---------EEEEEEC
T ss_pred CCCcEEEEeC-------CEEEEEcCCCCCCCceEhhhhccCCCCCc-c-EEEEECCcEEEecCC---------EEEEEeC
Confidence 4788999977 4567766543221 112 2344322 2 344458999999887 7999986
Q ss_pred CCC-cee-----ecc---CCCCC--ce-eeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCC---eEEEccCCcCcc
Q psy2979 271 KVN-QWQ-----DLA---PMLIP--RS-GAAICAL--DSCIYVLGGWHASTENTNRVECYHIAEN---TWEYKSPMKEKR 333 (400)
Q Consensus 271 ~~~-~W~-----~~~---~~~~~--r~-~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~---~W~~~~~~~~~~ 333 (400)
.++ +-. .+. .+|.. .. --++... ++++|++-|. ..|+||..+. .|...+..|..
T Consensus 89 ~~~~~~~~gyPk~i~~~~G~p~~~~~~~IDAA~~~~~~gk~yfFkG~--------~ywr~d~~~~P~~i~~~~~g~p~~- 159 (219)
T 1hxn_A 89 KGGYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAGR--------RLWWLDLKSGAQATWTELPWPHEK- 159 (219)
T ss_dssp SSSCEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEETT--------EEEEEEGGGGGGCCCEEECCSCSC-
T ss_pred CCCceecCCCCeehhhccCCCCcccccccceeEEecCCCEEEEEeCC--------EEEEEeCCCCceEhhhcCCCCCCC-
Confidence 532 111 111 22222 11 2223322 6899999874 7899997542 34333222211
Q ss_pred CcceEEE------------ECCEEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 334 YRPGIAV------------IDGKIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 334 ~~~~~~~------------~~~~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
.-++.. .++.+|++-|. ..|+||..+
T Consensus 160 -vdAa~~~~~~~~~~~~~~~~~~~YFFkg~--------~y~r~~~~~ 197 (219)
T 1hxn_A 160 -VDGALCMEKPLGPNSCSTSGPNLYLIHGP--------NLYCYRHVD 197 (219)
T ss_dssp -CSEEEEESSCSSSCCSCSSSCEEEEEETT--------EEEEESSHH
T ss_pred -cCEEEEccccccccceeccCCeEEEEECC--------EEEEEeCCc
Confidence 122323 24679999885 568887643
|
| >3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.61 E-value=14 Score=29.69 Aligned_cols=145 Identities=14% Similarity=0.107 Sum_probs=77.6
Q ss_pred eEEEECCeEEEEEeecCEEEEEECCC---CCeEEc----cCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCC
Q psy2979 151 GLVVSGRNTIYCLDIVDIVYVAASMH---KILHSL----GSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTK 223 (400)
Q Consensus 151 ~~~~~~~~~iyv~~~~~~~~~yd~~~---~~w~~~----~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 223 (400)
+++...+. +|++. .+.+|.++... +-=..+ +.+|. .-..+....++++|++-| +..++|+..+
T Consensus 10 A~~~~~g~-~~fFk-g~~~w~~~~~~~~~gyP~~I~~~w~glP~-~iDAa~~~~~g~~yfFkg-------~~yw~~~~~~ 79 (196)
T 3c7x_A 10 TVAMLRGE-MFVFK-ERWFWRVRNNQVMDGYPMPIGQFWRGLPA-SINTAYERKDGKFVFFKG-------DKHWVFDEAS 79 (196)
T ss_dssp EEEEETTE-EEEEE-TTEEEEEETTEECTTCSEEHHHHSTTCCS-SCCEEEECTTSCEEEEET-------TEEEEEETTE
T ss_pred EEEEcCCE-EEEEE-CCEEEEEECCccCCCCceEhhHhccCCCC-CccEEEEeCCCcEEEecC-------CEEEEEeCCc
Confidence 44456777 88873 35567775431 100111 12332 122222124678999977 5688887542
Q ss_pred Cce---EEcc----CCCCcccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceee-----ccCC-CCCceeee
Q psy2979 224 NEW---SYIE----PMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQD-----LAPM-LIPRSGAA 289 (400)
Q Consensus 224 ~~W---~~~~----~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~-----~~~~-~~~r~~~~ 289 (400)
-.. ..+. .+|...-..+... .++++|.+-|. ..++||..+++-.. +... ..+..--+
T Consensus 80 ~~~gyPk~I~~~~~glP~~~IDAA~~~~~~g~~yfFkG~---------~yw~yd~~~~~v~~gyPk~i~~~~gip~~ida 150 (196)
T 3c7x_A 80 LEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRGN---------KYYRFNEELRAVDSEYPKNIKVWEGIPESPRG 150 (196)
T ss_dssp ECTTCSEEGGGTCBSCCSSCCSEEEEETTTTEEEEEETT---------EEEEEETTTTEECTTCSEEGGGSBTCCSSCSE
T ss_pred ccCCCCeEhhhcCCCCCCCcccEEEEEccCCEEEEEECC---------EEEEEeCCcccccCCCCccHHHCCCcCCCcce
Confidence 110 1222 2443222222221 26899999887 68999987754322 1111 11222233
Q ss_pred EEEE-CC-eEEEEcCcCCCCCCCCeEEEEECCCCe
Q psy2979 290 ICAL-DS-CIYVLGGWHASTENTNRVECYHIAENT 322 (400)
Q Consensus 290 ~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~ 322 (400)
+... ++ ++|++-|. ..++||..+++
T Consensus 151 Af~~~~~~~~YfFkg~--------~y~r~d~~~~~ 177 (196)
T 3c7x_A 151 SFMGSDEVFTYFYKGN--------KYWKFNNQKLK 177 (196)
T ss_dssp EEECTTSSEEEEEETT--------EEEEEETTTTE
T ss_pred eEEecCCCEEEEEECC--------EEEEEECCcce
Confidence 4444 44 89999864 79999998765
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=84.18 E-value=32 Score=33.56 Aligned_cols=59 Identities=7% Similarity=-0.185 Sum_probs=30.6
Q ss_pred cceEEEEEcCCCceEEccCCcccce-eeeEEE-ECCeEEEEEeecCEEEEEECCCCCeEEcc
Q psy2979 124 LRSVEGFCVKTKVWKTLSCLPFAIS-KHGLVV-SGRNTIYCLDIVDIVYVAASMHKILHSLG 183 (400)
Q Consensus 124 ~~~~~~yd~~~~~w~~~~~~~~~~~-~~~~~~-~~~~~iyv~~~~~~~~~yd~~~~~w~~~~ 183 (400)
...++.+|..+++...+........ ....+. -++. .+++.....++.+|..+++...+.
T Consensus 90 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~-~la~~~~~~i~~~~~~~g~~~~~~ 150 (723)
T 1xfd_A 90 TGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQ-QLIFIFENNIYYCAHVGKQAIRVV 150 (723)
T ss_dssp CSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTT-CEEEEETTEEEEESSSSSCCEEEE
T ss_pred eeeEEEEECCCCceEeccCCccccccccccEECCCCC-EEEEEECCeEEEEECCCCceEEEe
Confidence 3678899998887665553321110 111111 2343 223323356777777776655443
|
| >3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP} | Back alignment and structure |
|---|
Probab=83.53 E-value=38 Score=33.74 Aligned_cols=206 Identities=11% Similarity=0.111 Sum_probs=109.1
Q ss_pred EEEEeecCEEEEEECCCCCeEEccC-C-----CC---cceeeeEEEE----CCEEEEEcccCC-CCCCCeEEEEeCCCCc
Q psy2979 160 IYCLDIVDIVYVAASMHKILHSLGS-L-----KF---DFDVSGIAML----DGFVYAVGGWDG-SCRLDSVERYDPTKNE 225 (400)
Q Consensus 160 iyv~~~~~~~~~yd~~~~~w~~~~~-~-----~~---~r~~~~~~~~----~~~iyv~GG~~~-~~~~~~v~~yd~~~~~ 225 (400)
+|+......+++-+-...+|+++.. + +. .........+ .+.+|+..|... ......+++=+-.-.+
T Consensus 36 ~y~~~~~ggv~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~~~~~~~~~i~~S~DgG~T 115 (763)
T 3a0f_A 36 IYARTDIGGTYRWNAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDYVQWDPWAAFLVSDDRGKT 115 (763)
T ss_dssp EEEEESSSCEEEEETTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSCTTTCSCCEEEEESSTTSS
T ss_pred EEEEeccCcEEEECCCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEecccccCCCCceEEEECCCCCC
Confidence 6666545567777777788998876 3 21 1122222223 357888665311 1112345544444568
Q ss_pred eEEccC-CC-----Ccccc-cEEEEe---CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCc---eeeeEEE
Q psy2979 226 WSYIEP-MK-----LAVTS-PAVVAH---EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPR---SGAAICA 292 (400)
Q Consensus 226 W~~~~~-l~-----~~~~~-~~~~~~---~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r---~~~~~~~ 292 (400)
|+.+.. .+ ..+.. ..+++. .+.+|+.+.. ..+++=+-...+|+++..++... .....+.
T Consensus 116 W~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~--------~~l~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~ 187 (763)
T 3a0f_A 116 FKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRT--------QGLWRSTDRAQTWSRMNQLPDSSTYGIGIISVI 187 (763)
T ss_dssp CEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSS--------SCEEEESSTTSSCEECTTSCCCSCTTTCEEEEE
T ss_pred ceeccCCcccCccccCccccceEEECCCCCCEEEEEeCC--------CcEEEECCCCcCccccccCcccCCCccceEEEE
Confidence 998852 11 11211 234443 3678875422 24665555567899998766432 1222222
Q ss_pred E----CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCc--------------------cCcceEEEE-CCEEEE
Q psy2979 293 L----DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEK--------------------RYRPGIAVI-DGKIYV 347 (400)
Q Consensus 293 ~----~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~--------------------~~~~~~~~~-~~~lyv 347 (400)
+ .+.+|+..... ..+++=+=.-.+|+.+...|.. ...+.++.. ++.+|+
T Consensus 188 ~~p~~~~~~~~~~~~~------g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~l~~ 261 (763)
T 3a0f_A 188 FDPKNVGTAYVASHAV------GGLWVTWDGGANWSQVGGQPTQWSDWTKSIVAASGTAIQSSGPLPIKIALGKNGRLYI 261 (763)
T ss_dssp ECSSSTTCEEEEESST------TCEEEESSSSSSCEECTTCCCSCCHHHHHHHHHHCCCCSSSSCEEEEEEECTTSCEEE
T ss_pred ECCCCCCEEEEEEeCC------CeEEEECCCCCCccccCCCccccccccccccccccccccCCCCcceeEEECCCCcEEE
Confidence 2 34677765321 0244433335579998755521 112222222 688888
Q ss_pred EcCcc-CC-CCCCCeEEEEECCCCcEEEecCCCC
Q psy2979 348 LGGEE-GW-DGYHDSIECYDVDNDSWEIMSHLPS 379 (400)
Q Consensus 348 ~GG~~-~~-~~~~~~v~~yd~~~~~W~~~~~~~~ 379 (400)
..... .. ......+++.+-...+|+.+..+|.
T Consensus 262 ~~~~~~~~~~~~~g~v~rS~D~G~tW~~~~~~~~ 295 (763)
T 3a0f_A 262 TYSDAPGPWGVLYGEVWSYDPTNGNWKHITPSRE 295 (763)
T ss_dssp EEESSCSSSCCCCEEEEEEETTTTEEEECCTTSS
T ss_pred EeccCCCCCCCcceeEEEEeCCCCceEECCCCCC
Confidence 74210 00 0123578999989999999875543
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=82.24 E-value=41 Score=33.20 Aligned_cols=234 Identities=9% Similarity=0.035 Sum_probs=117.4
Q ss_pred cceEEEEEcC---CCceEEccCCc---ccc--eeeeEEEE-CCeEEEEE--ee--c--CEEEEEECCCCCeEEccCCCCc
Q psy2979 124 LRSVEGFCVK---TKVWKTLSCLP---FAI--SKHGLVVS-GRNTIYCL--DI--V--DIVYVAASMHKILHSLGSLKFD 188 (400)
Q Consensus 124 ~~~~~~yd~~---~~~w~~~~~~~---~~~--~~~~~~~~-~~~~iyv~--~~--~--~~~~~yd~~~~~w~~~~~~~~~ 188 (400)
...++..+.. .+.|..+.+.. ... ...+.+.. ++. ..++ .. . ..++.+|..+++..... . +
T Consensus 132 ~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~-~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~--~ 207 (741)
T 1yr2_A 132 QSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGR-LLAYSVQDGGSDWRTVKFVGVADGKPLADE-L--K 207 (741)
T ss_dssp SCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSS-EEEEEEEETTCSEEEEEEEETTTCCEEEEE-E--E
T ss_pred EEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCC-EEEEEEcCCCCceEEEEEEECCCCCCCCcc-C--C
Confidence 4566777765 56777653322 111 11222333 455 3333 11 1 36899999998875431 1 1
Q ss_pred cee-eeEEEE-CCEEEEEcccCCC---------CCCCeEEEEeCCCCce--EEccCCCC-cccccEE-EEeCCEEEEEcC
Q psy2979 189 FDV-SGIAML-DGFVYAVGGWDGS---------CRLDSVERYDPTKNEW--SYIEPMKL-AVTSPAV-VAHEGMLYVTGG 253 (400)
Q Consensus 189 r~~-~~~~~~-~~~iyv~GG~~~~---------~~~~~v~~yd~~~~~W--~~~~~l~~-~~~~~~~-~~~~~~iyv~GG 253 (400)
... ...+.. ++.||... .+.. .....++.++..+++- ..+-..+. +...... ..-+|+..++..
T Consensus 208 ~~~~~~~~wspD~~l~~~~-~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~ 286 (741)
T 1yr2_A 208 WVKFSGLAWLGNDALLYSR-FAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITS 286 (741)
T ss_dssp EEESCCCEESTTSEEEEEE-CCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred CceeccEEEECCCEEEEEE-ecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEE
Confidence 111 122222 33444432 2221 1234688888876642 12222221 1111222 223554333333
Q ss_pred ccccCCC-CcceEEEEeCCCC--c-eeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCC--CeEEEcc
Q psy2979 254 AILEDGD-GIEQVQRYNPKVN--Q-WQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAE--NTWEYKS 327 (400)
Q Consensus 254 ~~~~~~~-~~~~v~~yd~~~~--~-W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~--~~W~~~~ 327 (400)
. ++. ..+.++.+|..+. . |..+.+-....... +..-++.||+....+.. ...++.+|..+ ..|..+-
T Consensus 287 ~---~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~---~~~l~~~d~~~~~~~~~~l~ 359 (741)
T 1yr2_A 287 S---EGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAP---LKKIVRVDLSGSTPRFDTVV 359 (741)
T ss_dssp E---CTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCT---TCEEEEEECSSSSCEEEEEE
T ss_pred E---ccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCC---CCEEEEEeCCCCccccEEEe
Confidence 2 221 1458999998776 6 87775433222222 23446777777643222 45899999887 5798875
Q ss_pred CCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEe
Q psy2979 328 PMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 328 ~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 374 (400)
+-... ....+...++++++.... + ....++.+|+..+.-+.+
T Consensus 360 ~~~~~-~l~~~~~~~~~lv~~~~~-d---g~~~l~~~~~~g~~~~~l 401 (741)
T 1yr2_A 360 PESKD-NLESVGIAGNRLFASYIH-D---AKSQVLAFDLDGKPAGAV 401 (741)
T ss_dssp CCCSS-EEEEEEEEBTEEEEEEEE-T---TEEEEEEEETTSCEEEEC
T ss_pred cCCCC-eEEEEEEECCEEEEEEEE-C---CEEEEEEEeCCCCceeec
Confidence 33221 112233448888887654 2 245788999865544443
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=82.10 E-value=32 Score=31.82 Aligned_cols=167 Identities=9% Similarity=0.014 Sum_probs=78.0
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCC----ceEEccC---C----CCcccccEEEEeCCEEEEEcCccccCCCCcceEE
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKN----EWSYIEP---M----KLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQ 266 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~----~W~~~~~---l----~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~ 266 (400)
.+++|+-|..+ +.++++|..++ +-.+.-. + ...+.++..+.-++ |||..-.. .++.....+.
T Consensus 95 r~~l~v~~l~s-----~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~-~~g~~~g~v~ 167 (462)
T 2ece_A 95 RRFLIVPGLRS-----SRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGN-EEGEGPGGIL 167 (462)
T ss_dssp SCEEEEEBTTT-----CCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEE-TTSCSCCEEE
T ss_pred CCEEEEccCCC-----CeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCC-cCCCCCCeEE
Confidence 35677766543 56899998766 3222210 1 11122222344466 88753221 0222267899
Q ss_pred EEeCCCCceeeccCCC-CC-ceeeeEE-EECCeEEEEcC----------cCCC----CCCCCeEEEEECCCCeEEEccCC
Q psy2979 267 RYNPKVNQWQDLAPML-IP-RSGAAIC-ALDSCIYVLGG----------WHAS----TENTNRVECYHIAENTWEYKSPM 329 (400)
Q Consensus 267 ~yd~~~~~W~~~~~~~-~~-r~~~~~~-~~~~~iyv~GG----------~~~~----~~~~~~v~~yd~~~~~W~~~~~~ 329 (400)
.+|+.+.+-..--+.+ .+ ...+... .-++++++..- .+.. .. .+++..||..+++ .++.+
T Consensus 168 vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~-~d~V~v~D~~~~k--~~~tI 244 (462)
T 2ece_A 168 MLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRY-GNRIHFWDLRKRK--RIHSL 244 (462)
T ss_dssp EECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHS-CCEEEEEETTTTE--EEEEE
T ss_pred EEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhcc-CCEEEEEECCCCc--EeeEE
Confidence 9999877632211111 11 1122222 22444444442 2221 12 5799999998864 33333
Q ss_pred cCccC--cceEEEE-----CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEec
Q psy2979 330 KEKRY--RPGIAVI-----DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMS 375 (400)
Q Consensus 330 ~~~~~--~~~~~~~-----~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 375 (400)
+.+.. .+.-..+ +..+|+..-. +.....+.|++|....++|+...
T Consensus 245 ~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~-~~~~Lss~V~v~~~d~g~~~~~~ 296 (462)
T 2ece_A 245 TLGEENRMALELRPLHDPTKLMGFINMVV-SLKDLSSSIWLWFYEDGKWNAEK 296 (462)
T ss_dssp ESCTTEEEEEEEEECSSTTCCEEEEEEEE-ETTTCCEEEEEEEEETTEEEEEE
T ss_pred ecCCCCCccceeEeeECCCCCEEEEEEee-eccCCCceEEEEEecCCceeEEE
Confidence 33211 1111112 4567776652 11112345655444457776554
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=82.07 E-value=26 Score=30.86 Aligned_cols=66 Identities=14% Similarity=0.110 Sum_probs=32.9
Q ss_pred CCeEEEEECC-CCeEEEccCCc--CccCcceEEEE--CC-EEEEEcCccCCCCCCCeEEEEECCCCcEE----EecCCCC
Q psy2979 310 TNRVECYHIA-ENTWEYKSPMK--EKRYRPGIAVI--DG-KIYVLGGEEGWDGYHDSIECYDVDNDSWE----IMSHLPS 379 (400)
Q Consensus 310 ~~~v~~yd~~-~~~W~~~~~~~--~~~~~~~~~~~--~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~W~----~~~~~~~ 379 (400)
.+.+..||.. +++...+.... .....+...++ +| .+|+.+.. ++ .-.++.+|+.+++.. .+..+|.
T Consensus 166 ~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~-~~---~v~v~~~~~~~g~~~~~~~~~~~~~~ 241 (365)
T 1jof_A 166 ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA-GN---RICEYVIDPATHMPVYTHHSFPLIPP 241 (365)
T ss_dssp TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT-TT---EEEEEEECTTTCCEEEEEEEEESSCT
T ss_pred CCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECC-CC---eEEEEEEeCCCCcEEEccceEEcCCC
Confidence 4579999987 67665443222 11122333334 44 67776533 11 123444556566643 3455554
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=80.78 E-value=34 Score=31.33 Aligned_cols=149 Identities=11% Similarity=0.126 Sum_probs=78.0
Q ss_pred eeEEEEC----CeEEEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEE-ECCEEEEEcccCCCCCCCeEEEEeCCCC
Q psy2979 150 HGLVVSG----RNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAM-LDGFVYAVGGWDGSCRLDSVERYDPTKN 224 (400)
Q Consensus 150 ~~~~~~~----~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 224 (400)
.++++-. +. ||+......+..+|+.+++...+.... . .-.+++. .++.||+..-.. ......+..++....
T Consensus 142 ~gvavd~~s~~g~-Lyv~D~~~~I~~id~~~g~v~~~~~~~-~-~P~giavd~dG~lyVad~~~-~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 142 WRMMFDPNSNYDD-LYWVGQRDAFRHVDFVNQYVDIKTTNI-G-QCADVNFTLNGDMVVVDDQS-SDTNTGIYLFTRASG 217 (433)
T ss_dssp CEEEECTTTTTCE-EEEECBTSCEEEEETTTTEEEEECCCC-S-CEEEEEECTTCCEEEEECCS-CTTSEEEEEECGGGT
T ss_pred ceEEEccccCCCE-EEEEeCCCCEEEEECCCCEEEEeecCC-C-CccEEEECCCCCEEEEcCCC-CcccceEEEEECCCC
Confidence 3455542 56 999844488999999888877665411 1 1122222 255688874321 111223555554322
Q ss_pred ceE---EccCCCCcccccEEEEe--CCEEEEEcCccccCCCCcceEEEEeCCCCce-eeccCCCCCceeeeEEEE-CC-e
Q psy2979 225 EWS---YIEPMKLAVTSPAVVAH--EGMLYVTGGAILEDGDGIEQVQRYNPKVNQW-QDLAPMLIPRSGAAICAL-DS-C 296 (400)
Q Consensus 225 ~W~---~~~~l~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~r~~~~~~~~-~~-~ 296 (400)
|. .++.+..+ ..+++. ++.||+.-.. ...+++||+.+..- +.+...........++.. ++ .
T Consensus 218 -~~~~~~~~~~~~P---~giavd~~~G~lyv~d~~-------~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~ 286 (433)
T 4hw6_A 218 -FTERLSLCNARGA---KTCAVHPQNGKIYYTRYH-------HAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDW 286 (433)
T ss_dssp -TCCEEEEEECSSB---CCCEECTTTCCEEECBTT-------CSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSE
T ss_pred -eeccccccccCCC---CEEEEeCCCCeEEEEECC-------CCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCE
Confidence 21 22222211 223332 6889987543 34799999986654 222211111111233333 44 5
Q ss_pred EEEEcCcCCCCCCCCeEEEEECC
Q psy2979 297 IYVLGGWHASTENTNRVECYHIA 319 (400)
Q Consensus 297 iyv~GG~~~~~~~~~~v~~yd~~ 319 (400)
||+..-. ...++++++.
T Consensus 287 LYvad~~------~~~I~~~~~d 303 (433)
T 4hw6_A 287 AYIIYNG------KHCIYRVDYN 303 (433)
T ss_dssp EEEEETT------TTEEEEEEBC
T ss_pred EEEEeCC------CCEEEEEeCC
Confidence 9998743 5688887754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 400 | ||||
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 7e-25 | |
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 1e-15 | |
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 2e-13 | |
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 2e-04 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 2e-16 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 9e-16 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 8e-15 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 8e-13 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 6e-12 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 2e-09 | |
| d1buoa_ | 121 | d.42.1.1 (A:) Promyelocytic leukaemia zinc finger | 1e-12 | |
| d1r29a_ | 122 | d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB | 3e-11 |
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 101 bits (250), Expect = 7e-25
Identities = 87/287 (30%), Positives = 131/287 (45%), Gaps = 14/287 (4%)
Query: 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSG---------RNTI 160
+I GG + L +E + W L+ L S V G N+
Sbjct: 5 RLIYTAGGYFRQS-LSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSP 63
Query: 161 YCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYD 220
+ M + + G+ ++DG +YAVGG G +SVERY+
Sbjct: 64 DGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYE 123
Query: 221 PTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAP 280
P ++EW + PM V +LY GG + + + + Y P+ N+W+ +
Sbjct: 124 PERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGF--DGTNRLNSAECYYPERNEWRMITA 181
Query: 281 MLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAV 340
M RSGA +C L +CIY GG+ + N VE Y + TW + +PMK +R GI V
Sbjct: 182 MNTIRSGAGVCVLHNCIYAAGGYDGQ-DQLNSVERYDVETETWTFVAPMKHRRSALGITV 240
Query: 341 IDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCV 387
G+IYVLGG +G + DS+ECYD D D+W ++ + S RS +G
Sbjct: 241 HQGRIYVLGGYDGHT-FLDSVECYDPDTDTWSEVTRMTSGRSGVGVA 286
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.9 bits (182), Expect = 1e-15
Identities = 52/145 (35%), Positives = 71/145 (48%), Gaps = 3/145 (2%)
Query: 196 MLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAI 255
+L+ +YAVGG+DG+ RL+S E Y P +NEW I M + V +Y GG
Sbjct: 146 VLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYD 205
Query: 256 LEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVEC 315
D + V+RY+ + W +APM RS I IYVLGG+ T + VEC
Sbjct: 206 --GQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHT-FLDSVEC 262
Query: 316 YHIAENTWEYKSPMKEKRYRPGIAV 340
Y +TW + M R G+AV
Sbjct: 263 YDPDTDTWSEVTRMTSGRSGVGVAV 287
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.4 bits (165), Expect = 2e-13
Identities = 40/197 (20%), Positives = 73/197 (37%), Gaps = 3/197 (1%)
Query: 197 LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAIL 256
+ +Y GG+ L +E Y+P+ W + +++ + A G+LY GG
Sbjct: 3 VGRLIYTAGGYF-RQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNN 61
Query: 257 -EDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVEC 315
DG+ + + + G + N VE
Sbjct: 62 SPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVER 121
Query: 316 YHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMS 375
Y + W +PM +R G+AV++ +Y +GG +S ECY + + W +++
Sbjct: 122 YEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGG-FDGTNRLNSAECYYPERNEWRMIT 180
Query: 376 HLPSARSWLGCVPLQIH 392
+ + RS G L
Sbjct: 181 AMNTIRSGAGVCVLHNC 197
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (93), Expect = 2e-04
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 95 HITPRTKPRKSAGSI---NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHG 151
+ P R + G I +GG D L SVE + T W ++ + S G
Sbjct: 225 FVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVG 284
Query: 152 LVVS 155
+ V+
Sbjct: 285 VAVT 288
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 77.9 bits (190), Expect = 2e-16
Identities = 25/190 (13%), Positives = 50/190 (26%), Gaps = 20/190 (10%)
Query: 196 MLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAV----TSPAVVAHEGMLYVT 251
G V+ G + D + A +G +
Sbjct: 190 WKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTF 249
Query: 252 GGAILEDGDGIEQVQRY------NPKVNQWQDLAPMLIPRSG-AAICALDSCIYVLGGWH 304
GG+ N + R+ ++ D ++ GG
Sbjct: 250 GGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR 309
Query: 305 AST-----ENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGY 357
E Y ++T+ ++P R I+++ DG+++ GG D
Sbjct: 310 RGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCT 369
Query: 358 --HDSIECYD 365
H + +
Sbjct: 370 TNHFDAQIFT 379
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 76.0 bits (185), Expect = 9e-16
Identities = 27/210 (12%), Positives = 56/210 (26%), Gaps = 18/210 (8%)
Query: 192 SGIAMLDGFVYAVGGWDGS------CRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHE 245
+ I G V + + +DP+ S T +
Sbjct: 24 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV---TKHDMFCPG 80
Query: 246 GMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDS-CIYVLGGWH 304
+ G ++ G+ ++ Y+ + W M + R + + ++ +GG
Sbjct: 81 ISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSW 140
Query: 305 ASTENTNRVECYHIAENTWEYKSPMKEKRYRP----GIAVIDGKIYVLGGEEGW----DG 356
+ E Y + TW K G+ D ++ G ++G
Sbjct: 141 SGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGP 200
Query: 357 YHDSIECYDVDNDSWEIMSHLPSARSWLGC 386
Y + + S R
Sbjct: 201 STAMNWYYTSGSGDVKSAGKRQSNRGVAPD 230
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 72.9 bits (177), Expect = 8e-15
Identities = 35/319 (10%), Positives = 82/319 (25%), Gaps = 41/319 (12%)
Query: 112 IIAVGGED------DKVVLRSVEGFCVKTKVWKTLSCLPFAISKH--GLVVSGRNTIYCL 163
++ + + T + + G+ + G I
Sbjct: 33 VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVT 92
Query: 164 DIVDI----VYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERY 219
D +Y ++S I + + S G W G + E Y
Sbjct: 93 GGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVY 152
Query: 220 DPTKNEWSYIEPMK----LAVTSPAVVAHEGMLYV---TGGAILEDGDGIEQVQRYNPKV 272
P+ W+ + K L + + ++ G++ + G Y
Sbjct: 153 SPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGS 212
Query: 273 NQWQDLAPMLIPRSGAAICALDSCIYVL----------------GGWHASTENTNRVECY 316
+ R A + + + + +
Sbjct: 213 GDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEP 272
Query: 317 HIAENTWEYKSPM-KEKRYRPGIAVIDGKIYVLGGEEGWDGYHD-----SIECYDVDNDS 370
+ NT + + + + + + DG ++ GG+ + D + E Y + D+
Sbjct: 273 GTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT 332
Query: 371 WEIMSHLPSARSWLGCVPL 389
+ + R + L
Sbjct: 333 FYKQNPNSIVRVYHSISLL 351
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 66.8 bits (161), Expect = 8e-13
Identities = 25/172 (14%), Positives = 51/172 (29%), Gaps = 13/172 (7%)
Query: 221 PTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGG----AILEDGDGIEQVQRYNPKVNQWQ 276
P W + + + A+ G + + A GI ++P
Sbjct: 6 PGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS 65
Query: 277 DLAPMLIPRSGAAICAL---DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKR 333
D + + I V GG + + Y + ++W M+ R
Sbjct: 66 DRTVTVTKHDMFCPGISMDGNGQIVVTGGN-----DAKKTSLYDSSSDSWIPGPDMQVAR 120
Query: 334 YRPGIAV-IDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWL 384
A DG+++ +GG + + E Y + +W + +
Sbjct: 121 GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLT 172
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 64.5 bits (155), Expect = 6e-12
Identities = 22/132 (16%), Positives = 44/132 (33%), Gaps = 13/132 (9%)
Query: 270 PKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNR-----VECYHIAENTWE 324
P + +W + I + AAI + + + + + +
Sbjct: 6 PGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS 65
Query: 325 YKSPMKEKRYR--PGIAVI-DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSAR 381
++ K PGI++ +G+I V GG + YD +DSW + AR
Sbjct: 66 DRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA-----KKTSLYDSSSDSWIPGPDMQVAR 120
Query: 382 SWLGCVPLQIHK 393
+ + +
Sbjct: 121 GYQSSATMSDGR 132
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 56.7 bits (135), Expect = 2e-09
Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 9/86 (10%)
Query: 194 IAMLDGFVYAVGG------WDGSCRLDSVERYDPTKNEWSYIEPMKLAVT--SPAVVAHE 245
+ + DG + GG ++ S + + E Y P ++ + P + S +++ +
Sbjct: 295 VVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPD 354
Query: 246 GMLYVTGGAILEDGDGIEQ-VQRYNP 270
G ++ GG + D Q + P
Sbjct: 355 GRVFNGGGGLCGDCTTNHFDAQIFTP 380
|
| >d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.4 bits (151), Expect = 1e-12
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFK-----VLETIRLPQLSPYF 58
+L N+ R CDV + VD +F AHR VLA +S F+ + L LSP
Sbjct: 15 LLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQHYTLDFLSPKT 74
Query: 59 LHDCVE--QCAIIKNNPQCAQ-LVEEAKLFHL 87
+E A ++ + L+ A++ +
Sbjct: 75 FQQILEYAYTATLQAKAEDLDDLLYAAEILEI 106
|
| >d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: B-cell lymphoma 6 (Bcl6) protein BTB domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.8 bits (139), Expect = 3e-11
Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 13/97 (13%)
Query: 4 VLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFK----------VLETIRLPQ 53
VL N R + DV + V +F AH+ VL A S F + P+
Sbjct: 12 VLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPE 71
Query: 54 LSPYFLHDCVE---QCAIIKNNPQCAQLVEEAKLFHL 87
++P + ++ + ++ A +
Sbjct: 72 INPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQM 108
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 400 | |||
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 100.0 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 100.0 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 100.0 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 99.96 | |
| d1buoa_ | 121 | Promyelocytic leukaemia zinc finger (PLZF) protein | 99.72 | |
| d1r29a_ | 122 | B-cell lymphoma 6 (Bcl6) protein BTB domain {Human | 99.69 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 98.05 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.83 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 97.68 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.59 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.49 | |
| d1pexa_ | 192 | Collagenase-3 (MMP-13), C-terminal domain {Human ( | 97.4 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 97.35 | |
| d1su3a2 | 195 | Collagenase (MMP1), C-terminal domain {Human (Homo | 97.27 | |
| d1itva_ | 195 | Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: | 97.06 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 97.01 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 96.91 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 96.84 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 96.81 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 96.75 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 96.74 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 96.69 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 96.61 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 96.58 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 96.56 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 96.54 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 96.51 | |
| d1su3a2 | 195 | Collagenase (MMP1), C-terminal domain {Human (Homo | 96.5 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 96.37 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 96.36 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 96.28 | |
| d1pexa_ | 192 | Collagenase-3 (MMP-13), C-terminal domain {Human ( | 96.18 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 96.17 | |
| d1itva_ | 195 | Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: | 95.94 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 95.76 | |
| d1gena_ | 200 | Gelatinase A (MMP-2), C-terminal domain {Human (Ho | 95.48 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 95.38 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 95.3 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 95.18 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 95.09 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 95.06 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 95.04 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 95.03 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 94.99 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 94.89 | |
| d1qhua1 | 192 | Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: | 94.73 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 94.46 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 94.35 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 94.21 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 94.1 | |
| d1gena_ | 200 | Gelatinase A (MMP-2), C-terminal domain {Human (Ho | 94.06 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 93.89 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 93.85 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 93.81 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 93.73 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 93.69 | |
| d1qhua1 | 192 | Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: | 92.7 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 92.56 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 92.28 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 92.22 | |
| d1hxna_ | 210 | Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: | 91.71 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 91.61 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 91.47 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 89.41 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 89.21 | |
| d1hxna_ | 210 | Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: | 89.03 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 88.1 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 86.82 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 86.5 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 83.1 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 81.15 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 81.01 |
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-46 Score=334.30 Aligned_cols=273 Identities=32% Similarity=0.610 Sum_probs=255.8
Q ss_pred CcEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEE----------eecCEEEEEECCCCC
Q psy2979 109 INVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCL----------DIVDIVYVAASMHKI 178 (400)
Q Consensus 109 ~~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~----------~~~~~~~~yd~~~~~ 178 (400)
.++|+++||.. ...++.+++||+.+++|.+++++|.+|..|+++++++. ||++ ...++++.||+.+++
T Consensus 4 g~~iyv~GG~~-~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~~~yd~~~~~ 81 (288)
T d1zgka1 4 GRLIYTAGGYF-RQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGL-LYAVGGRNNSPDGNTDSSALDCYNPMTNQ 81 (288)
T ss_dssp CCCEEEECCBS-SSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTE-EEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCEEEEECCcC-CCCCceEEEEECCCCeEEECCCCCCccceeEEEEECCE-EEEEeCcccCCCCccccchhhhccccccc
Confidence 36899999987 46789999999999999999999999999999999999 9999 345789999999999
Q ss_pred eEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccC
Q psy2979 179 LHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILED 258 (400)
Q Consensus 179 w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~ 258 (400)
|..+++||.+|..++++.+++++|++||..+....+.++.||+.+++|...+.++..|..|+++..++++|++||. +
T Consensus 82 w~~~~~~p~~r~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~GG~---~ 158 (288)
T d1zgka1 82 WSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGF---D 158 (288)
T ss_dssp EEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCB---C
T ss_pred ccccccccceecceeccccceeeEEecceecccccceeeeeccccCccccccccccccccceeeeeeecceEecCc---c
Confidence 9999999999999999999999999999988878889999999999999999999999999999999999999998 5
Q ss_pred CCC-cceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcce
Q psy2979 259 GDG-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPG 337 (400)
Q Consensus 259 ~~~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~ 337 (400)
... ...++.||+.+++|...+.++.++..++++..+++||++||.+.... .++.+.||+.+++|+.++++|.+|..++
T Consensus 159 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~r~~~~ 237 (288)
T d1zgka1 159 GTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQ-LNSVERYDVETETWTFVAPMKHRRSALG 237 (288)
T ss_dssp SSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSB-CCCEEEEETTTTEEEECCCCSSCCBSCE
T ss_pred cccccceEEEeeccccccccccccccccccccccceeeeEEEecCcccccc-ccceeeeeecceeeecccCccCcccceE
Confidence 554 77899999999999999999999999999999999999999887766 8899999999999999999999999999
Q ss_pred EEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEE
Q psy2979 338 IAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVP 388 (400)
Q Consensus 338 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~ 388 (400)
+++++++|||+||. +.....+++++|||++++|+++++||.+|.+|++|+
T Consensus 238 ~~~~~~~l~v~GG~-~~~~~~~~v~~yd~~~~~W~~~~~~p~~R~~~~~~~ 287 (288)
T d1zgka1 238 ITVHQGRIYVLGGY-DGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAV 287 (288)
T ss_dssp EEEETTEEEEECCB-CSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE
T ss_pred EEEECCEEEEEecC-CCCeecceEEEEECCCCEEEECCCCCCCcEeEEEEE
Confidence 99999999999998 777788999999999999999999999999999886
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.2e-37 Score=273.09 Aligned_cols=236 Identities=28% Similarity=0.512 Sum_probs=216.4
Q ss_pred CCeEEEEE-----eecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCC----CCCCCeEEEEeCCCCce
Q psy2979 156 GRNTIYCL-----DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDG----SCRLDSVERYDPTKNEW 226 (400)
Q Consensus 156 ~~~~iyv~-----~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~----~~~~~~v~~yd~~~~~W 226 (400)
++. ||++ ...+.+++||+.+++|+++++||.+|.+|+++.++++||++||... ....+++++||+.+++|
T Consensus 4 g~~-iyv~GG~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w 82 (288)
T d1zgka1 4 GRL-IYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW 82 (288)
T ss_dssp CCC-EEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred CCE-EEEECCcCCCCCceEEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccccc
Confidence 445 8888 5567899999999999999999999999999999999999999742 23567899999999999
Q ss_pred EEccCCCCcccccEEEEeCCEEEEEcCccccCCCC-cceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCC
Q psy2979 227 SYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHA 305 (400)
Q Consensus 227 ~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~ 305 (400)
+.+++||.+|..|++++++++||++||. ++.. .+.++.||+.++.|...+.++.+|..++++.+++++|++||.+.
T Consensus 83 ~~~~~~p~~r~~~~~~~~~~~i~~~gg~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~GG~~~ 159 (288)
T d1zgka1 83 SPCAPMSVPRNRIGVGVIDGHIYAVGGS---HGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDG 159 (288)
T ss_dssp EECCCCSSCCBTCEEEEETTEEEEECCE---ETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred cccccccceecceeccccceeeEEecce---ecccccceeeeeccccCccccccccccccccceeeeeeecceEecCccc
Confidence 9999999999999999999999999998 6555 78899999999999999999999999999999999999999877
Q ss_pred CCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCcee
Q psy2979 306 STENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLG 385 (400)
Q Consensus 306 ~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~ 385 (400)
... ...++.||+.+++|...+..+..+..+++++.+++||++||. ......++.+.||+.+++|+.++++|.+|..|+
T Consensus 160 ~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~ 237 (288)
T d1zgka1 160 TNR-LNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGY-DGQDQLNSVERYDVETETWTFVAPMKHRRSALG 237 (288)
T ss_dssp SCB-CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCB-CSSSBCCCEEEEETTTTEEEECCCCSSCCBSCE
T ss_pred ccc-cceEEEeeccccccccccccccccccccccceeeeEEEecCc-cccccccceeeeeecceeeecccCccCcccceE
Confidence 666 788999999999999999999999999999999999999998 666778899999999999999999999999999
Q ss_pred eEEEcccccccc
Q psy2979 386 CVPLQIHKSQFV 397 (400)
Q Consensus 386 ~~~~~~~~~~~~ 397 (400)
++++++++++|.
T Consensus 238 ~~~~~~~l~v~G 249 (288)
T d1zgka1 238 ITVHQGRIYVLG 249 (288)
T ss_dssp EEEETTEEEEEC
T ss_pred EEEECCEEEEEe
Confidence 999998777763
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=100.00 E-value=6.7e-34 Score=263.54 Aligned_cols=282 Identities=13% Similarity=0.087 Sum_probs=210.3
Q ss_pred CcEEEEEeccCCC------cccceEEEEEcCCCceEEccCCccccee--eeEEEE-CCeEEEEE--eecCEEEEEECCCC
Q psy2979 109 INVIIAVGGEDDK------VVLRSVEGFCVKTKVWKTLSCLPFAISK--HGLVVS-GRNTIYCL--DIVDIVYVAASMHK 177 (400)
Q Consensus 109 ~~~i~~~gg~~~~------~~~~~~~~yd~~~~~w~~~~~~~~~~~~--~~~~~~-~~~~iyv~--~~~~~~~~yd~~~~ 177 (400)
.+.++++||.... ......++||+.+++|..++.++.++.. ++.++. ++. ||++ ...+.+++||+.++
T Consensus 30 ~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-i~v~Gg~~~~~~~~yd~~~~ 108 (387)
T d1k3ia3 30 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTSLYDSSSD 108 (387)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEEEEEGGGT
T ss_pred CCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCc-EEEeecCCCcceeEecCccC
Confidence 4689999997532 2344678999999999988766665543 344444 556 8888 55678999999999
Q ss_pred CeEEccCCCCcceeeeEEEE-CCEEEEEcccCC-CCCCCeEEEEeCCCCceEEccCCCCcccc--------------cEE
Q psy2979 178 ILHSLGSLKFDFDVSGIAML-DGFVYAVGGWDG-SCRLDSVERYDPTKNEWSYIEPMKLAVTS--------------PAV 241 (400)
Q Consensus 178 ~w~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~l~~~~~~--------------~~~ 241 (400)
+|...++|+.+|..|+++.+ ++++|++||... ....+++++||+.+++|+.++.++..... ...
T Consensus 109 ~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (387)
T d1k3ia3 109 SWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLF 188 (387)
T ss_dssp EEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEE
T ss_pred cccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEE
Confidence 99999999999999998887 679999999754 45678999999999999999876543221 112
Q ss_pred EEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCc-------eeeeEEE--ECCeEEEEcCcCCCCCC--C
Q psy2979 242 VAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPR-------SGAAICA--LDSCIYVLGGWHASTEN--T 310 (400)
Q Consensus 242 ~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r-------~~~~~~~--~~~~iyv~GG~~~~~~~--~ 310 (400)
...++++|+.||. ...++.||+.+..|...+.++.++ ..+++.. .++++|++||....... .
T Consensus 189 ~~~~G~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~ 261 (387)
T d1k3ia3 189 GWKKGSVFQAGPS-------TAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT 261 (387)
T ss_dssp ECGGGCEEECCSS-------SEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred EeCCCCEEEecCc-------CCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCccc
Confidence 3336778887776 568899999999999886554332 2333322 37899999997543321 1
Q ss_pred CeEE-----EEECCCCeEEEccCCcCccCcceEEEE-CCEEEEEcCccC-----CCCCCCeEEEEECCCCcEEEecCCCC
Q psy2979 311 NRVE-----CYHIAENTWEYKSPMKEKRYRPGIAVI-DGKIYVLGGEEG-----WDGYHDSIECYDVDNDSWEIMSHLPS 379 (400)
Q Consensus 311 ~~v~-----~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~-----~~~~~~~v~~yd~~~~~W~~~~~~~~ 379 (400)
.... .+++..+.|..+++||.+|..++++++ +|+||++||.+. .......+++|||++++|+.+++||.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~ 341 (387)
T d1k3ia3 262 TNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSI 341 (387)
T ss_dssp CCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSS
T ss_pred ceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCCC
Confidence 1222 234456679999999999999999888 789999999731 12345679999999999999999999
Q ss_pred CCCceeeEEE--ccccccccc
Q psy2979 380 ARSWLGCVPL--QIHKSQFVD 398 (400)
Q Consensus 380 ~r~~~~~~~~--~~~~~~~~~ 398 (400)
+|..|+++++ +++++++.|
T Consensus 342 ~R~~Hs~a~l~~dG~v~v~GG 362 (387)
T d1k3ia3 342 VRVYHSISLLLPDGRVFNGGG 362 (387)
T ss_dssp CCCTTEEEEECTTSCEEEEEC
T ss_pred cccceEEEEECCCCEEEEEeC
Confidence 9999998876 445554443
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=99.96 E-value=9.3e-29 Score=228.64 Aligned_cols=254 Identities=15% Similarity=0.168 Sum_probs=190.0
Q ss_pred cCCCceEEccCCcccceeeeEEEECCeEEEEE------------eecCEEEEEECCCCCeEEccCCCCcceeeeEE--E-
Q psy2979 132 VKTKVWKTLSCLPFAISKHGLVVSGRNTIYCL------------DIVDIVYVAASMHKILHSLGSLKFDFDVSGIA--M- 196 (400)
Q Consensus 132 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~------------~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~--~- 196 (400)
|..++|....++|..+..++++..+++ ||++ .....++.|||.+++|...++++.+|..++++ .
T Consensus 6 p~~g~W~~~~~~p~~~~~~a~~~~~gk-v~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~ 84 (387)
T d1k3ia3 6 PGLGRWGPTIDLPIVPAAAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMD 84 (387)
T ss_dssp TTSCEEEEEEECSSCCSEEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEEC
T ss_pred CCCCccCCcCCCCccccEEEEEeeCCE-EEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEe
Confidence 677899998888887776666666888 9998 11235789999999999988887776554332 2
Q ss_pred ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe-CCEEEEEcCccccCCCC--cceEEEEeCCCC
Q psy2979 197 LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH-EGMLYVTGGAILEDGDG--IEQVQRYNPKVN 273 (400)
Q Consensus 197 ~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~--~~~v~~yd~~~~ 273 (400)
.+++||++||.+. +++++||+.+++|+..++|+.+|..|+++.+ ++++|++||. .... .+++++||+.++
T Consensus 85 ~~g~i~v~Gg~~~----~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~---~~~~~~~~~v~~yd~~~~ 157 (387)
T d1k3ia3 85 GNGQIVVTGGNDA----KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGS---WSGGVFEKNGEVYSPSSK 157 (387)
T ss_dssp TTSCEEEECSSST----TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCC---CCSSSCCCCEEEEETTTT
T ss_pred cCCcEEEeecCCC----cceeEecCccCcccccccccccccccceeeecCCceeeeccc---cccccccceeeeecCCCC
Confidence 3789999998763 5689999999999999999999999998886 7899999997 4333 789999999999
Q ss_pred ceeeccCCCCCcee--------------eeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCcc------
Q psy2979 274 QWQDLAPMLIPRSG--------------AAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKR------ 333 (400)
Q Consensus 274 ~W~~~~~~~~~r~~--------------~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~------ 333 (400)
+|+.++.++.+... ......++++|+.||. ...++.||+.+..|...+.++..+
T Consensus 158 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (387)
T d1k3ia3 158 TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPS------TAMNWYYTSGSGDVKSAGKRQSNRGVAPDA 231 (387)
T ss_dssp EEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSS------SEEEEEECSTTCEEEEEEECEETTEECCCC
T ss_pred ceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCc------CCcEEecCcccCcEeeccccccCcccCccc
Confidence 99999866543221 1122236788888776 678999999999999887655433
Q ss_pred -CcceEEE--ECCEEEEEcCccCCCC--CCCeE-----EEEECCCCcEEEecCCCCCCCceeeEEEcccccccccC
Q psy2979 334 -YRPGIAV--IDGKIYVLGGEEGWDG--YHDSI-----ECYDVDNDSWEIMSHLPSARSWLGCVPLQIHKSQFVDK 399 (400)
Q Consensus 334 -~~~~~~~--~~~~lyv~GG~~~~~~--~~~~v-----~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 399 (400)
..+++.. .++++|++||...... ..... +.+++..+.|..++.||.+|..|+++++.+..++++||
T Consensus 232 ~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG 307 (387)
T d1k3ia3 232 MCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGG 307 (387)
T ss_dssp BTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECC
T ss_pred ccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECC
Confidence 2222222 2799999999732221 11222 22345567899999999999999999997766777776
|
| >d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=3.4e-18 Score=128.57 Aligned_cols=89 Identities=27% Similarity=0.391 Sum_probs=81.7
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc-----ceeecCCCCHH---HHHHHhhhcccccCch
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL-----ETIRLPQLSPY---FLHDCVEQCAIIKNNP 73 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m-----~~vrl~~l~~~---~l~~~i~~~~l~~~~~ 73 (400)
+.+++.|+++|++|.|||++|.|+|++|+|||.|||++|+||++| ..|.++.++++ .+++++|++++..+..
T Consensus 13 ~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~lf~~~~~~i~~~~v~~~~f~~ll~~~Ytg~i~l~~~ 92 (121)
T d1buoa_ 13 TGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQHYTLDFLSPKTFQQILEYAYTATLQAKAE 92 (121)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSCCSEEEECSSCHHHHHHHHHHHHHSCCCCCGG
T ss_pred HHHHHHHHHHHhcCCcEeEEEEECCEEEEEEHHHhcccChhhhhhccCccceeecCCCCHHHHHHHHHheEccccCCcHH
Confidence 578999999999999999999999999999999999999999977 67999999997 6788999999988999
Q ss_pred hHHHHHHHHHhcCCCcc
Q psy2979 74 QCAQLVEEAKLFHLLPD 90 (400)
Q Consensus 74 ~c~~~l~~a~~~~~~~~ 90 (400)
+..+++.+|..+++...
T Consensus 93 ~v~~ll~~A~~l~~~~L 109 (121)
T d1buoa_ 93 DLDDLLYAAEILEIEYL 109 (121)
T ss_dssp GHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHhCCHHH
Confidence 99999999998876543
|
| >d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: B-cell lymphoma 6 (Bcl6) protein BTB domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=2.2e-17 Score=124.78 Aligned_cols=89 Identities=22% Similarity=0.284 Sum_probs=79.4
Q ss_pred hhHHHHHHHHHhcCceeceEEEECCeEEehhhHHHhhcCcccccc----------ceeecCCCCHH---HHHHHhhhccc
Q psy2979 2 KMVLTGFNEARKNNEFCDVTLCVDGSKFPAHRVVLAASSPYFKVL----------ETIRLPQLSPY---FLHDCVEQCAI 68 (400)
Q Consensus 2 ~~~l~~l~~~r~~~~~~Dv~l~~~~~~~~~hr~vLaa~s~yf~~m----------~~vrl~~l~~~---~l~~~i~~~~l 68 (400)
+.|++.|+++|+++.||||+|.++|++|+|||.|||++|+||+.| ..+.++.++++ .+++++|++++
T Consensus 10 ~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~~~~~~~~v~~~~f~~ll~~~Ytg~~ 89 (122)
T d1r29a_ 10 SDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRL 89 (122)
T ss_dssp HHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhcCCCeEEEEEECCEEEEEehHHhhhCCHHHHHHhccchhhhcceeeeecccCHHHHHHHHhhhcCCee
Confidence 578999999999999999999999999999999999999999988 23556789987 67789999999
Q ss_pred ccCchhHHHHHHHHHhcCCCcc
Q psy2979 69 IKNNPQCAQLVEEAKLFHLLPD 90 (400)
Q Consensus 69 ~~~~~~c~~~l~~a~~~~~~~~ 90 (400)
..+..+..+++..|..+++...
T Consensus 90 ~i~~~~v~~ll~~A~~l~i~~L 111 (122)
T d1r29a_ 90 NLREGNIMAVMATAMYLQMEHV 111 (122)
T ss_dssp CCCTTTHHHHHHHHHHTTCHHH
T ss_pred cCchhhHHHHHHHHHHHCcHHH
Confidence 8899999999999998876543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=98.05 E-value=0.00036 Score=58.81 Aligned_cols=251 Identities=14% Similarity=0.133 Sum_probs=128.2
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEE-eecCEEEEEECCCCCeEEccCCCC
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCL-DIVDIVYVAASMHKILHSLGSLKF 187 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~ 187 (400)
.++||.+..+ .++.++|+.+++...-- +.....+++++. ++..+|+. ...+.+..||..+++-.. .++.
T Consensus 2 ~~~yV~~~~~-----~~v~v~D~~t~~~~~~i--~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~--~~~~ 72 (301)
T d1l0qa2 2 TFAYIANSES-----DNISVIDVTSNKVTATI--PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIA--TVPA 72 (301)
T ss_dssp EEEEEEETTT-----TEEEEEETTTTEEEEEE--ECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEE--EEEC
T ss_pred eEEEEEECCC-----CEEEEEECCCCeEEEEE--ECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceee--eeec
Confidence 4678876544 46889999998765422 222223455555 44437766 455789999998775432 2222
Q ss_pred cceeeeEEEE-CC-EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE-eC-CEEEEEcCccccCCCCcc
Q psy2979 188 DFDVSGIAML-DG-FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA-HE-GMLYVTGGAILEDGDGIE 263 (400)
Q Consensus 188 ~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~~-~~iyv~GG~~~~~~~~~~ 263 (400)
...-..++.. ++ .+++.+..+ ..+..+|..+++....-.... .....+. -+ ..+++.+.. ..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~dg~~~~~~~~~-------~~ 138 (301)
T d1l0qa2 73 GSSPQGVAVSPDGKQVYVTNMAS-----STLSVIDTTSNTVAGTVKTGK--SPLGLALSPDGKKLYVTNNG-------DK 138 (301)
T ss_dssp SSSEEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETT-------TT
T ss_pred ccccccccccccccccccccccc-----ceeeecccccceeeeeccccc--cceEEEeecCCCeeeeeecc-------cc
Confidence 2222233332 33 455543322 457778888776544322221 1122222 23 445555544 23
Q ss_pred eEEEEeCCCCceeeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE
Q psy2979 264 QVQRYNPKVNQWQDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI 341 (400)
Q Consensus 264 ~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 341 (400)
.+..++..+.......+.... ...++.. ++.+|+.+.. ...+..++............+..........-
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (301)
T d1l0qa2 139 TVSVINTVTKAVINTVSVGRS--PKGIAVTPDGTKVYVANFD------SMSISVIDTVTNSVIDTVKVEAAPSGIAVNPE 210 (301)
T ss_dssp EEEEEETTTTEEEEEEECCSS--EEEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEECSSEEEEEEECTT
T ss_pred ceeeeeccccceeeecccCCC--ceEEEeeccccceeeeccc------ccccccccccceeeeecccccCCcceeecccc
Confidence 677788877765443222211 1222222 3456665543 34677777777766554333221111111111
Q ss_pred CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEcccccccc
Q psy2979 342 DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQIHKSQFV 397 (400)
Q Consensus 342 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~ 397 (400)
++.+|+.+.. ...+.+++||+.+.+-. ..++....-.++++-.+..++|+
T Consensus 211 g~~~~v~~~~----~~~~~v~v~D~~t~~~~--~~~~~~~~~~~va~spdg~~l~v 260 (301)
T d1l0qa2 211 GTKAYVTNVD----KYFNTVSMIDTGTNKIT--ARIPVGPDPAGIAVTPDGKKVYV 260 (301)
T ss_dssp SSEEEEEEEC----SSCCEEEEEETTTTEEE--EEEECCSSEEEEEECTTSSEEEE
T ss_pred cccccccccc----ceeeeeeeeecCCCeEE--EEEcCCCCEEEEEEeCCCCEEEE
Confidence 4566665432 12357899999887532 23333333456666666666654
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.83 E-value=0.0061 Score=51.00 Aligned_cols=221 Identities=9% Similarity=0.061 Sum_probs=117.6
Q ss_pred eeEEEE-CCeEEEEE-eecCEEEEEECCCCCeE-EccCCC----CcceeeeEEEE--CCEEEE-EcccCCCCCCCeEEEE
Q psy2979 150 HGLVVS-GRNTIYCL-DIVDIVYVAASMHKILH-SLGSLK----FDFDVSGIAML--DGFVYA-VGGWDGSCRLDSVERY 219 (400)
Q Consensus 150 ~~~~~~-~~~~iyv~-~~~~~~~~yd~~~~~w~-~~~~~~----~~r~~~~~~~~--~~~iyv-~GG~~~~~~~~~v~~y 219 (400)
+++++- ++. |||. ...+.+..||+.. ++. ..+... ....-...+.. .+..++ ..+. ...+..+
T Consensus 26 ~gvavd~dg~-i~VaD~~n~rI~v~d~~G-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-----~~~i~~~ 98 (279)
T d1q7fa_ 26 SGVAVNAQND-IIVADTNNHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP-----THQIQIY 98 (279)
T ss_dssp EEEEECTTCC-EEEEEGGGTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG-----GCEEEEE
T ss_pred cEEEEcCCCC-EEEEECCCCEEEEEeCCC-CEEEEecccCCCcccccccccccccccccccceeccCC-----ccccccc
Confidence 455553 566 9998 4566899999874 333 222211 11122223333 233333 2221 2457788
Q ss_pred eCCCCceEEccCCCCcccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCeE
Q psy2979 220 DPTKNEWSYIEPMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSCI 297 (400)
Q Consensus 220 d~~~~~W~~~~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~i 297 (400)
++....+.....-.. ...+..++ -++.+|+.... ...+..|++....-..............++.- ++.+
T Consensus 99 ~~~g~~~~~~~~~~~-~~p~~~avd~~G~i~v~~~~-------~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i 170 (279)
T d1q7fa_ 99 NQYGQFVRKFGATIL-QHPRGVTVDNKGRIIVVECK-------VMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEI 170 (279)
T ss_dssp CTTSCEEEEECTTTC-SCEEEEEECTTSCEEEEETT-------TTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEE
T ss_pred cccccceeecCCCcc-cccceeccccCCcEEEEeec-------cceeeEeccCCceeecccccccccccceeeeccceeE
Confidence 887776665532111 11123333 36788988665 34788899877654544322222222333333 6789
Q ss_pred EEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEec
Q psy2979 298 YVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMS 375 (400)
Q Consensus 298 yv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 375 (400)
|+.... ...+..||+..+....++..... ..+....+ +|+|||.... . ...|.+|++..+-=+.+.
T Consensus 171 ~v~d~~------~~~V~~~d~~G~~~~~~g~~g~~-~~P~giavD~~G~i~Vad~~-~----~~~v~~f~~~G~~~~~~~ 238 (279)
T d1q7fa_ 171 FISDNR------AHCVKVFNYEGQYLRQIGGEGIT-NYPIGVGINSNGEILIADNH-N----NFNLTIFTQDGQLISALE 238 (279)
T ss_dssp EEEEGG------GTEEEEEETTCCEEEEESCTTTS-CSEEEEEECTTCCEEEEECS-S----SCEEEEECTTSCEEEEEE
T ss_pred Eeeecc------ccceeeeecCCceeeeecccccc-cCCcccccccCCeEEEEECC-C----CcEEEEECCCCCEEEEEe
Confidence 998875 56899999988776666532211 22223333 6789998543 1 135889997654212222
Q ss_pred CCCCCCCceeeEEEcccccccc
Q psy2979 376 HLPSARSWLGCVPLQIHKSQFV 397 (400)
Q Consensus 376 ~~~~~r~~~~~~~~~~~~~~~~ 397 (400)
.-.....-+++++..+..+++.
T Consensus 239 ~~~~~~~p~~vav~~dG~l~V~ 260 (279)
T d1q7fa_ 239 SKVKHAQCFDVALMDDGSVVLA 260 (279)
T ss_dssp ESSCCSCEEEEEEETTTEEEEE
T ss_pred CCCCCCCEeEEEEeCCCcEEEE
Confidence 1111223466666666554443
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=97.68 E-value=0.0025 Score=53.32 Aligned_cols=224 Identities=15% Similarity=0.134 Sum_probs=111.8
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEE-eecCEEEEEECCCCCeEEccCCCC
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCL-DIVDIVYVAASMHKILHSLGSLKF 187 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~ 187 (400)
+++++.+..+ ..+.+||..+++-.. .++.....+.++.. ++..+++. .....+..++..+++....-...
T Consensus 44 ~~l~v~~~~~-----~~i~v~d~~t~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 115 (301)
T d1l0qa2 44 TKVYVANAHS-----NDVSIIDTATNNVIA--TVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG- 115 (301)
T ss_dssp SEEEEEEGGG-----TEEEEEETTTTEEEE--EEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-
T ss_pred CEEEEEECCC-----CEEEEEECCCCceee--eeeccccccccccccccccccccccccceeeecccccceeeeecccc-
Confidence 4566665433 478899998876432 22222223344444 33314443 33456777787776543322211
Q ss_pred cceeeeEEEE-CC-EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE--eCCEEEEEcCccccCCCCcc
Q psy2979 188 DFDVSGIAML-DG-FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA--HEGMLYVTGGAILEDGDGIE 263 (400)
Q Consensus 188 ~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~ 263 (400)
......+.. ++ .+++.+..+ ..+..++..+.+.....+..... ..++. -++.+|+.+.. ..
T Consensus 116 -~~~~~~~~~~dg~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-------~~ 180 (301)
T d1l0qa2 116 -KSPLGLALSPDGKKLYVTNNGD-----KTVSVINTVTKAVINTVSVGRSP--KGIAVTPDGTKVYVANFD-------SM 180 (301)
T ss_dssp -SSEEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEECCSSE--EEEEECTTSSEEEEEETT-------TT
T ss_pred -ccceEEEeecCCCeeeeeeccc-----cceeeeeccccceeeecccCCCc--eEEEeeccccceeeeccc-------cc
Confidence 111222222 33 455544322 35677788777654432222111 12222 24556666543 23
Q ss_pred eEEEEeCCCCceeeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE
Q psy2979 264 QVQRYNPKVNQWQDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI 341 (400)
Q Consensus 264 ~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 341 (400)
.+..++................ ...+.. ++.+|+.+.. .. ...+..+|+.+++-... .+.... +..+++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~v~~~~-~~---~~~v~v~D~~t~~~~~~--~~~~~~-~~~va~ 251 (301)
T d1l0qa2 181 SISVIDTVTNSVIDTVKVEAAP--SGIAVNPEGTKAYVTNVD-KY---FNTVSMIDTGTNKITAR--IPVGPD-PAGIAV 251 (301)
T ss_dssp EEEEEETTTTEEEEEEECSSEE--EEEEECTTSSEEEEEEEC-SS---CCEEEEEETTTTEEEEE--EECCSS-EEEEEE
T ss_pred ccccccccceeeeecccccCCc--ceeecccccccccccccc-ce---eeeeeeeecCCCeEEEE--EcCCCC-EEEEEE
Confidence 5666776666655443333221 222222 4456655422 11 45799999988764321 222211 223333
Q ss_pred --CC-EEEEEcCccCCCCCCCeEEEEECCCCcE
Q psy2979 342 --DG-KIYVLGGEEGWDGYHDSIECYDVDNDSW 371 (400)
Q Consensus 342 --~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~W 371 (400)
+| +||+.++. .+.|.+||+++++-
T Consensus 252 spdg~~l~va~~~------~~~i~v~D~~t~~~ 278 (301)
T d1l0qa2 252 TPDGKKVYVALSF------CNTVSVIDTATNTI 278 (301)
T ss_dssp CTTSSEEEEEETT------TTEEEEEETTTTEE
T ss_pred eCCCCEEEEEECC------CCeEEEEECCCCeE
Confidence 44 68888765 25799999999854
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.59 E-value=0.0069 Score=51.19 Aligned_cols=202 Identities=12% Similarity=0.088 Sum_probs=107.4
Q ss_pred CCeEEEEE-eecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCC
Q psy2979 156 GRNTIYCL-DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKL 234 (400)
Q Consensus 156 ~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~ 234 (400)
++. ||.+ .....++.+|+.+++-.... ++.. ....+..-++.+++... +.+..||+.+++++.+...+.
T Consensus 29 ~~~-l~wvDi~~~~I~r~d~~~g~~~~~~-~~~~-~~~i~~~~dg~l~va~~-------~gl~~~d~~tg~~~~l~~~~~ 98 (295)
T d2ghsa1 29 SGT-AWWFNILERELHELHLASGRKTVHA-LPFM-GSALAKISDSKQLIASD-------DGLFLRDTATGVLTLHAELES 98 (295)
T ss_dssp TTE-EEEEEGGGTEEEEEETTTTEEEEEE-CSSC-EEEEEEEETTEEEEEET-------TEEEEEETTTCCEEEEECSST
T ss_pred CCE-EEEEECCCCEEEEEECCCCeEEEEE-CCCC-cEEEEEecCCCEEEEEe-------CccEEeecccceeeEEeeeec
Confidence 344 7766 34567999999988654432 2221 12222234777777532 358999999999988765432
Q ss_pred ----cccccEEEEeCCEEEEEcCccccCCCC--cceEEEEeCCCCceeecc-CCCCCceeeeEEEE--CCeEEEEcCcCC
Q psy2979 235 ----AVTSPAVVAHEGMLYVTGGAILEDGDG--IEQVQRYNPKVNQWQDLA-PMLIPRSGAAICAL--DSCIYVLGGWHA 305 (400)
Q Consensus 235 ----~~~~~~~~~~~~~iyv~GG~~~~~~~~--~~~v~~yd~~~~~W~~~~-~~~~~r~~~~~~~~--~~~iyv~GG~~~ 305 (400)
.+.+...+.-+|.||+.... .... ...+++++ .++.+.+. .+..+ -+.+.. ++.+|+..-.
T Consensus 99 ~~~~~~~nd~~vd~~G~iw~~~~~---~~~~~~~g~l~~~~--~g~~~~~~~~~~~~---Ng~~~s~d~~~l~~~dt~-- 168 (295)
T d2ghsa1 99 DLPGNRSNDGRMHPSGALWIGTMG---RKAETGAGSIYHVA--KGKVTKLFADISIP---NSICFSPDGTTGYFVDTK-- 168 (295)
T ss_dssp TCTTEEEEEEEECTTSCEEEEEEE---TTCCTTCEEEEEEE--TTEEEEEEEEESSE---EEEEECTTSCEEEEEETT--
T ss_pred CCCcccceeeEECCCCCEEEEecc---ccccccceeEeeec--CCcEEEEeeccCCc---ceeeecCCCceEEEeecc--
Confidence 23333344457888876432 1111 23344443 45555443 22211 122222 4457777643
Q ss_pred CCCCCCeEEEEECCCC--e----EEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCC
Q psy2979 306 STENTNRVECYHIAEN--T----WEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHL 377 (400)
Q Consensus 306 ~~~~~~~v~~yd~~~~--~----W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~ 377 (400)
...+++|+...+ . .......+.....+-...+ +|.||+..-. ...|.+|||.......+ .+
T Consensus 169 ----~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~------~g~V~~~dp~G~~~~~i-~l 237 (295)
T d2ghsa1 169 ----VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG------EGAVDRYDTDGNHIARY-EV 237 (295)
T ss_dssp ----TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET------TTEEEEECTTCCEEEEE-EC
T ss_pred ----cceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeC------CCceEEecCCCcEeeEe-cC
Confidence 568888876422 1 1111112212222223333 6789987311 13699999988777776 45
Q ss_pred CCCCCceeeEEEc
Q psy2979 378 PSARSWLGCVPLQ 390 (400)
Q Consensus 378 ~~~r~~~~~~~~~ 390 (400)
|.+ ...+|..+
T Consensus 238 P~~--~~T~~~FG 248 (295)
T d2ghsa1 238 PGK--QTTCPAFI 248 (295)
T ss_dssp SCS--BEEEEEEE
T ss_pred CCC--ceEEEEEe
Confidence 654 34455554
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.49 E-value=0.011 Score=50.54 Aligned_cols=201 Identities=12% Similarity=0.119 Sum_probs=110.1
Q ss_pred CCeEEEEE-eecCEEEEEECCCCCeEEcc-CCCCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccC-
Q psy2979 156 GRNTIYCL-DIVDIVYVAASMHKILHSLG-SLKFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEP- 231 (400)
Q Consensus 156 ~~~~iyv~-~~~~~~~~yd~~~~~w~~~~-~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~- 231 (400)
++. ||+. ....+++.+||.++...... +... .-++++.. ++++||..-.+ ......+..++..+........
T Consensus 50 ~G~-Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~--~p~gla~~~dG~l~va~~~~-~~~~~~i~~~~~~~~~~~~~~~~ 125 (319)
T d2dg1a1 50 QGQ-LFLLDVFEGNIFKINPETKEIKRPFVSHKA--NPAAIKIHKDGRLFVCYLGD-FKSTGGIFAATENGDNLQDIIED 125 (319)
T ss_dssp TSC-EEEEETTTCEEEEECTTTCCEEEEEECSSS--SEEEEEECTTSCEEEEECTT-SSSCCEEEEECTTSCSCEEEECS
T ss_pred CCC-EEEEECCCCEEEEEECCCCeEEEEEeCCCC--CeeEEEECCCCCEEEEecCC-CccceeEEEEcCCCceeeeeccC
Confidence 456 8888 45567999999887644332 2111 12333333 67898873211 1223567888888877655432
Q ss_pred CCC-cccccEEEEeCCEEEEEcCccccCCCC-cceEEEEeCCCCceeecc-CCCCCceeeeEEEE--CCeEEEEcCcCCC
Q psy2979 232 MKL-AVTSPAVVAHEGMLYVTGGAILEDGDG-IEQVQRYNPKVNQWQDLA-PMLIPRSGAAICAL--DSCIYVLGGWHAS 306 (400)
Q Consensus 232 l~~-~~~~~~~~~~~~~iyv~GG~~~~~~~~-~~~v~~yd~~~~~W~~~~-~~~~~r~~~~~~~~--~~~iyv~GG~~~~ 306 (400)
... .+.+-.++.-+|.+|+..-.. .... ...++++++.....+.+. .+..| .+++.- ++.||+..-.
T Consensus 126 ~~~~~~~nd~~~d~~G~l~vtd~~~--~~~~~~g~v~~~~~dg~~~~~~~~~~~~p---nGia~s~dg~~lyvad~~--- 197 (319)
T d2dg1a1 126 LSTAYCIDDMVFDSKGGFYFTDFRG--YSTNPLGGVYYVSPDFRTVTPIIQNISVA---NGIALSTDEKVLWVTETT--- 197 (319)
T ss_dssp SSSCCCEEEEEECTTSCEEEEECCC--BTTBCCEEEEEECTTSCCEEEEEEEESSE---EEEEECTTSSEEEEEEGG---
T ss_pred CCcccCCcceeEEeccceeeccccc--ccccCcceeEEEecccceeEEEeecccee---eeeeeccccceEEEeccc---
Confidence 222 222223334578899864321 1111 567999999887776653 33322 223332 3468888644
Q ss_pred CCCCCeEEEEECCCCe---EEEccC---CcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCC
Q psy2979 307 TENTNRVECYHIAENT---WEYKSP---MKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLP 378 (400)
Q Consensus 307 ~~~~~~v~~yd~~~~~---W~~~~~---~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~ 378 (400)
.+.+++||...+. +..... .......+-..++ +|.|||..-. ...|.+|||.......+ .+|
T Consensus 198 ---~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~------~g~V~~~~p~G~~l~~i-~~P 267 (319)
T d2dg1a1 198 ---ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG------QGRVLVFNKRGYPIGQI-LIP 267 (319)
T ss_dssp ---GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET------TTEEEEECTTSCEEEEE-ECT
T ss_pred ---CCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcC------CCEEEEECCCCcEEEEE-eCC
Confidence 5689999865431 111111 1111122223333 6889997422 24799999976655555 344
|
| >d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Collagenase-3 (MMP-13), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.40 E-value=0.015 Score=45.49 Aligned_cols=145 Identities=12% Similarity=0.116 Sum_probs=85.1
Q ss_pred eEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEc------cCCCCcccccEEEE--eCCEEEEEcCccccCCCCcce
Q psy2979 193 GIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYI------EPMKLAVTSPAVVA--HEGMLYVTGGAILEDGDGIEQ 264 (400)
Q Consensus 193 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~------~~l~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~ 264 (400)
+++.++|.+|++-| ..+++++.....+... +.||... . ++.+ .++++|++-|. .
T Consensus 13 Av~~~~g~~y~Fkg-------~~~wr~~~~~~~~~p~~i~~~w~~lp~~I-D-AAf~~~~~~~~yffkg~---------~ 74 (192)
T d1pexa_ 13 AITSLRGETMIFKD-------RFFWRLHPQQVDAELFLTKSFWPELPNRI-D-AAYEHPSHDLIFIFRGR---------K 74 (192)
T ss_dssp EEEEETTEEEEEET-------TEEEEECSSSSCCEEEEHHHHCTTSCSSC-C-EEEEETTTTEEEEEETT---------E
T ss_pred EEEEcCCeEEEEEC-------CEEEEEcCCCCCCcccchhhhCcCCCCcc-c-ceEEEcCCCEEEEEcCC---------E
Confidence 46678999999977 4466666544433321 3455432 2 2222 37889999887 6
Q ss_pred EEEEeCCCCcee---eccC--CCCCcee-eeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccC------Cc
Q psy2979 265 VQRYNPKVNQWQ---DLAP--MLIPRSG-AAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSP------MK 330 (400)
Q Consensus 265 v~~yd~~~~~W~---~~~~--~~~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~------~~ 330 (400)
+++|+..+...- .+.. +|.+... -+++.. ++++|++-|. ..++||..++.=...-+ .+
T Consensus 75 ~w~y~~~~~~~gyPk~i~~~~~~~~~~~idaA~~~~~~~~~y~Fkg~--------~y~~y~~~~~~~~~~~pk~I~~~w~ 146 (192)
T d1pexa_ 75 FWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGN--------QVWRYDDTNHIMDKDYPRLIEEDFP 146 (192)
T ss_dssp EEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEETT--------EEEEEETTTTEECSSCCCBHHHHST
T ss_pred EEEEcCCcccCCCCeEeeeeecCCCCCCccEEEEECCCCEEEEEeCC--------EEEEEcCccccccCCCcEEHhhcCC
Confidence 899986554431 2222 1222112 223332 6899999864 78999987764221111 11
Q ss_pred -CccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcE
Q psy2979 331 -EKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSW 371 (400)
Q Consensus 331 -~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W 371 (400)
.+..-.++...+|++|++-|. ..++||..+.+=
T Consensus 147 gvp~~vdAa~~~~g~~YfF~g~--------~y~r~~~~~~~v 180 (192)
T d1pexa_ 147 GIGDKVDAVYEKNGYIYFFNGP--------IQFEYSIWSNRI 180 (192)
T ss_dssp TSCSCCSEEEEETTEEEEEETT--------EEEEEETTTTEE
T ss_pred CCCCCceEEEEeCCEEEEEECC--------EEEEEeCCcCeE
Confidence 111223444569999999875 789999887653
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.35 E-value=0.028 Score=46.65 Aligned_cols=228 Identities=12% Similarity=0.136 Sum_probs=110.1
Q ss_pred EEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCCCCc--
Q psy2979 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFD-- 188 (400)
Q Consensus 111 ~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~-- 188 (400)
..++.|+.+ ..+..+|..+++-...-.-.....-.+++...+..+++......+..++...............
T Consensus 25 ~~l~s~s~D-----g~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~ 99 (299)
T d1nr0a2 25 KTLFSADAE-----GHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLS 99 (299)
T ss_dssp SEEEEEETT-----SCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECS
T ss_pred CEEEEEcCC-----CeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEeccCCcccccccccccccc
Confidence 345566655 4678888877653322111111112233333333266665556677777554332111111100
Q ss_pred ceeeeEEE-ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEE-EeCCEEEEEcCccccCCCCcceEE
Q psy2979 189 FDVSGIAM-LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVV-AHEGMLYVTGGAILEDGDGIEQVQ 266 (400)
Q Consensus 189 r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~v~ 266 (400)
.....++. -++.+.+.+. . ..+..|+.. +....+. .....+++ .-+++++++|+. ++ .+.
T Consensus 100 ~~~~~~~~s~~g~~~~~~~-~-----~~i~~~~~~--~~~~~~~---~~~~~~~~~s~~~~~l~~g~~---dg----~i~ 161 (299)
T d1nr0a2 100 SQPLGLAVSADGDIAVAAC-Y-----KHIAIYSHG--KLTEVPI---SYNSSCVALSNDKQFVAVGGQ---DS----KVH 161 (299)
T ss_dssp SCEEEEEECTTSSCEEEEE-S-----SEEEEEETT--EEEEEEC---SSCEEEEEECTTSCEEEEEET---TS----EEE
T ss_pred ccccccccccccccccccc-c-----ccccccccc--ccccccc---ccccccccccccccccccccc---cc----ccc
Confidence 01111111 1444444333 1 346666633 2222211 11111222 236677778877 43 788
Q ss_pred EEeCCCCceeeccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEc-cCCcCccCcceEEEE--C
Q psy2979 267 RYNPKVNQWQDLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYK-SPMKEKRYRPGIAVI--D 342 (400)
Q Consensus 267 ~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~-~~~~~~~~~~~~~~~--~ 342 (400)
.||..+.+...+........-.+++.. ++..++.|+. ...+..||..++..... ..+.........+.+ +
T Consensus 162 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 235 (299)
T d1nr0a2 162 VYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ------SRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPD 235 (299)
T ss_dssp EEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET------TSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTT
T ss_pred cccccccccccccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccc
Confidence 999877766554332222222222222 5566666665 45789999887664432 222222222223333 6
Q ss_pred CEEEEEcCccCCCCCCCeEEEEECCCCcEEE
Q psy2979 343 GKIYVLGGEEGWDGYHDSIECYDVDNDSWEI 373 (400)
Q Consensus 343 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~ 373 (400)
++.++.|+. + ..|.+||..+.+...
T Consensus 236 ~~~l~sgs~-d-----g~i~iwd~~~~~~~~ 260 (299)
T d1nr0a2 236 NVRLATGSL-D-----NSVIVWNMNKPSDHP 260 (299)
T ss_dssp SSEEEEEET-T-----SCEEEEETTCTTSCC
T ss_pred ccceEEEcC-C-----CEEEEEECCCCCcce
Confidence 777777876 3 368899988765443
|
| >d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Collagenase (MMP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.27 E-value=0.0084 Score=47.06 Aligned_cols=146 Identities=12% Similarity=0.046 Sum_probs=84.4
Q ss_pred eEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEE--c----cCCCCcccccEEEEe--CCEEEEEcCccccCCCCcce
Q psy2979 193 GIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSY--I----EPMKLAVTSPAVVAH--EGMLYVTGGAILEDGDGIEQ 264 (400)
Q Consensus 193 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~--~----~~l~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 264 (400)
+++.++|.+|++-| ..+++.+........ + +.+|.... ++... ++++|++-|. .
T Consensus 16 Av~~~~G~~y~Fkg-------~~~wr~~~~~~~~~p~~i~~~w~glp~~ID--AAf~~~~~~~~yfFkG~---------~ 77 (195)
T d1su3a2 16 AITTIRGEVMFFKD-------RFYMRTNPFYPEVELNFISVFWPQLPNGLE--AAYEFADRDEVRFFKGN---------K 77 (195)
T ss_dssp EEEEETTEEEEEET-------TEEEECCTTSSSCEEEEGGGTCTTSCSSCC--EEEEEGGGTEEEEEETT---------E
T ss_pred EEEEcCCeEEEEeC-------CEEEEeeCCCCccCccchHhhCcCCCCccc--ceEEecCCcEEEEECCc---------E
Confidence 56678999999977 335555544433321 1 23454332 33323 6899999887 7
Q ss_pred EEEEeCCCCce---eecc---CCCCCceee-eEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEE-----ccC-C
Q psy2979 265 VQRYNPKVNQW---QDLA---PMLIPRSGA-AICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEY-----KSP-M 329 (400)
Q Consensus 265 v~~yd~~~~~W---~~~~---~~~~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~-----~~~-~ 329 (400)
.++|+..+... ..+. .+|...... ++... ++++|++-|. ..++||..+++=.. +.. .
T Consensus 78 y~~y~~~~~~~g~p~~i~~~~G~p~~~~~idaa~~~~~~~~~Y~FkG~--------~y~ry~~~~~~vd~gyPk~I~~~w 149 (195)
T d1su3a2 78 YWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVAN--------KYWRYDEYKRSMDPGYPKMIAHDF 149 (195)
T ss_dssp EEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEETT--------EEEEEETTTTEECSSCSEEHHHHS
T ss_pred EEEEcCCccccCCCccchhhcCCCCCccccccccccCCCCeEEEEeCC--------EEEEEeccCccccCCccccccccc
Confidence 89998533221 1111 123222222 22232 5799999874 79999988875211 110 1
Q ss_pred c-CccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEE
Q psy2979 330 K-EKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWE 372 (400)
Q Consensus 330 ~-~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~ 372 (400)
+ .+..--++...+|++|++-|. ..++||+.+.+-.
T Consensus 150 ~Gvp~~iDAAf~~~g~~YfFkg~--------~y~r~~~~~~~v~ 185 (195)
T d1su3a2 150 PGIGHKVDAVFMKDGFFYFFHGT--------RQYKFDPKTKRIL 185 (195)
T ss_dssp TTSCSCCSEEEEETTEEEEEETT--------EEEEEETTTTEEE
T ss_pred CCCCCCccEEEEECCeEEEEECC--------EEEEEeCCcCEEE
Confidence 1 122223455669999999886 6899999876543
|
| >d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Gelatinase B (MMP-9) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.06 E-value=0.018 Score=45.14 Aligned_cols=144 Identities=11% Similarity=0.078 Sum_probs=83.0
Q ss_pred eEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEE----c----cCCCCcccccEEEE-eCCEEEEEcCccccCCCCcc
Q psy2979 193 GIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSY----I----EPMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIE 263 (400)
Q Consensus 193 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~----~----~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~ 263 (400)
+++.++|.+|++-| ...++|+........ + +.||... ..+... .++++|.+-|.
T Consensus 11 Av~~~~G~~y~Fkg-------~~ywr~~~~~~~~~~~P~~I~~~w~glp~~I-DAAf~~~~~~k~yfFkg~--------- 73 (195)
T d1itva_ 11 AIAEIGNQLYLFKD-------GKYWRFSEGRGSRPQGPFLIADKWPALPRKL-DSVFEEPLSKKLFFFSGR--------- 73 (195)
T ss_dssp EEEEETTEEEEEET-------TEEEEECCSSSCCCEEEEEHHHHCTTSCSSC-SEEEECTTTCCEEEEETT---------
T ss_pred eEEEeCCEEEEEEC-------CEEEEEeCCCCCcCCCcEEeeeecCCCCCCc-cEEEEECCCCEEEEEecC---------
Confidence 46678999999977 456777654333211 1 3455332 112112 36899999776
Q ss_pred eEEEEeCCCCce-eeccC--CCCCce--eeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEE-----ccC-Cc-C
Q psy2979 264 QVQRYNPKVNQW-QDLAP--MLIPRS--GAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEY-----KSP-MK-E 331 (400)
Q Consensus 264 ~v~~yd~~~~~W-~~~~~--~~~~r~--~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~-----~~~-~~-~ 331 (400)
.+++|+-.+... ..+.. +|.... .++...-++++|++-|. .+++||..+++=.. +.. .+ .
T Consensus 74 ~~~~y~~~~~~~Pk~i~~~g~p~~~~~idaa~~~~~g~~Y~FkG~--------~y~ryd~~~~~v~~gyPk~i~~~w~gv 145 (195)
T d1itva_ 74 QVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSGR--------RLWRFDVKAQMVDPRSASEVDRMFPGV 145 (195)
T ss_dssp EEEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEETT--------EEEEEETTTTEECGGGCEEHHHHSTTS
T ss_pred EEEEEcCccccCCEEhhhcCCCCCchheeeEEEcCCCeEEEEecc--------EEEEEeCCcccccCCCccchhhhcCCC
Confidence 688887432111 12222 222212 22222236899999763 79999998875321 110 11 2
Q ss_pred ccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 332 KRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 332 ~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
+....++...++++|++-|. ..++||..+.
T Consensus 146 p~~idaAf~~~~~~Yffkg~--------~y~r~~~~~~ 175 (195)
T d1itva_ 146 PLDTHDVFQFREKAYFCQDR--------FYWRVSSRSE 175 (195)
T ss_dssp CSSCSEEEEETTEEEEEETT--------EEEEEECCTT
T ss_pred CCCCcEEEEeCCcEEEEECC--------EEEEEcCCce
Confidence 22344566679999999886 6789997664
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=97.01 E-value=0.072 Score=44.60 Aligned_cols=213 Identities=10% Similarity=0.016 Sum_probs=113.3
Q ss_pred eEEEE-CCeEEEEE-eecCEEEEEECCCCCeEEccCCCCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceE
Q psy2979 151 GLVVS-GRNTIYCL-DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWS 227 (400)
Q Consensus 151 ~~~~~-~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 227 (400)
.+++. ++. ||+. ....+++.+||... .......+. .-.+++.- ++.+|+.+-..+. ......+....+-+
T Consensus 32 ~iAv~pdG~-l~vt~~~~~~I~~i~p~g~-~~~~~~~~~--~~~gla~~~dG~l~v~~~~~~~---~~~~~~~~~~~~~~ 104 (302)
T d2p4oa1 32 NLASAPDGT-IFVTNHEVGEIVSITPDGN-QQIHATVEG--KVSGLAFTSNGDLVATGWNADS---IPVVSLVKSDGTVE 104 (302)
T ss_dssp EEEECTTSC-EEEEETTTTEEEEECTTCC-EEEEEECSS--EEEEEEECTTSCEEEEEECTTS---CEEEEEECTTSCEE
T ss_pred CEEECCCCC-EEEEeCCCCEEEEEeCCCC-EEEEEcCCC--CcceEEEcCCCCeEEEecCCce---EEEEEeccccccee
Confidence 44444 556 8888 44668999998754 444444332 12233322 6788887532211 12233344455555
Q ss_pred EccCCCCcccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCcee---eccCC------CCCceeeeEEEECCeE
Q psy2979 228 YIEPMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQ---DLAPM------LIPRSGAAICALDSCI 297 (400)
Q Consensus 228 ~~~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~---~~~~~------~~~r~~~~~~~~~~~i 297 (400)
.+..++........+. -++.+|+.... ...++++|+.+..-. .-+.+ ......-++...++.+
T Consensus 105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l 177 (302)
T d2p4oa1 105 TLLTLPDAIFLNGITPLSDTQYLTADSY-------RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFL 177 (302)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETT-------TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEE
T ss_pred eccccCCccccceeEEccCCCEEeeccc-------cccceeeeccCCcceeEecCCccceeeccCcccccccccccCCce
Confidence 5555554444444443 47888887544 347888988776522 11111 1111222344457788
Q ss_pred EEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcC-ccCcceEEEE-CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEec
Q psy2979 298 YVLGGWHASTENTNRVECYHIAENTWEYKSPMKE-KRYRPGIAVI-DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMS 375 (400)
Q Consensus 298 yv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 375 (400)
|+.... ...+++|+.....-........ .....+++.- +|.||+.... .+.|.+|+|..+.-...
T Consensus 178 ~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~------~~~V~~i~p~G~~~~~~- 244 (302)
T d2p4oa1 178 YVSNTE------KMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHI------YNSVVRIAPDRSTTIIA- 244 (302)
T ss_dssp EEEETT------TTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBT------TCCEEEECTTCCEEEEE-
T ss_pred eeecCC------CCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcC------CCcEEEECCCCCEEEEE-
Confidence 887654 5689999876553111111000 1111233332 7889998644 24699999987654433
Q ss_pred CCCCCCCceeeEEEc
Q psy2979 376 HLPSARSWLGCVPLQ 390 (400)
Q Consensus 376 ~~~~~r~~~~~~~~~ 390 (400)
....+-.+..++..+
T Consensus 245 ~~~~~~~~pt~vafg 259 (302)
T d2p4oa1 245 QAEQGVIGSTAVAFG 259 (302)
T ss_dssp CGGGTCTTEEEEEEC
T ss_pred ecCCCCCCceEEEEc
Confidence 333344455566663
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=96.91 E-value=0.044 Score=46.44 Aligned_cols=194 Identities=10% Similarity=0.010 Sum_probs=101.9
Q ss_pred CCeEEEEE--------eecCEEEEEECCCCCeEEccCCCCc---ceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCC
Q psy2979 156 GRNTIYCL--------DIVDIVYVAASMHKILHSLGSLKFD---FDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPT 222 (400)
Q Consensus 156 ~~~~iyv~--------~~~~~~~~yd~~~~~w~~~~~~~~~---r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 222 (400)
++. +|+. ....+++++|+.++.+......... -.-.+++.- ++.+|+..+. ..+.++|+.
T Consensus 28 dG~-ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~------~~i~~~~~~ 100 (314)
T d1pjxa_ 28 NGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR------LGLLVVQTD 100 (314)
T ss_dssp TSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT------TEEEEEETT
T ss_pred CCC-EEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECC------CeEEEEeCC
Confidence 555 8877 2235699999999987665432211 112233333 3467876542 358889998
Q ss_pred CCceEEccCCCCcc--cc-cEE-EEeCCEEEEEcCcc--c-cCC----CC-cceEEEEeCCCCceeecc-CCCCCceeee
Q psy2979 223 KNEWSYIEPMKLAV--TS-PAV-VAHEGMLYVTGGAI--L-EDG----DG-IEQVQRYNPKVNQWQDLA-PMLIPRSGAA 289 (400)
Q Consensus 223 ~~~W~~~~~l~~~~--~~-~~~-~~~~~~iyv~GG~~--~-~~~----~~-~~~v~~yd~~~~~W~~~~-~~~~~r~~~~ 289 (400)
......+....... .. ..+ +.-+|.||+..... . .+. .. ...++++++.. ++..+. .+..| -+
T Consensus 101 g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~~~~~~~~p---NG 176 (314)
T d1pjxa_ 101 GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVDTAFQFP---NG 176 (314)
T ss_dssp SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEEEEEEESSE---EE
T ss_pred CcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ceeEeeCCccee---ee
Confidence 77655443322221 11 223 33468999873211 0 000 01 45789998854 344443 33322 12
Q ss_pred EEE-ECC-----eEEEEcCcCCCCCCCCeEEEEECCCCe---EEE-ccCCcCcc-CcceEEEE--CCEEEEEcCccCCCC
Q psy2979 290 ICA-LDS-----CIYVLGGWHASTENTNRVECYHIAENT---WEY-KSPMKEKR-YRPGIAVI--DGKIYVLGGEEGWDG 356 (400)
Q Consensus 290 ~~~-~~~-----~iyv~GG~~~~~~~~~~v~~yd~~~~~---W~~-~~~~~~~~-~~~~~~~~--~~~lyv~GG~~~~~~ 356 (400)
++. -++ .+|+..-. ...+++||...+. +.. ...++... ..+-..++ +|.|||..-.
T Consensus 177 i~~~~d~d~~~~~lyv~d~~------~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~----- 245 (314)
T d1pjxa_ 177 IAVRHMNDGRPYQLIVAETP------TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG----- 245 (314)
T ss_dssp EEEEECTTSCEEEEEEEETT------TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET-----
T ss_pred eEECCCCCcceeEEEEEeec------ccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcC-----
Confidence 222 222 58877543 5689999865432 111 22222211 12222333 6889997522
Q ss_pred CCCeEEEEECCCCcEE
Q psy2979 357 YHDSIECYDVDNDSWE 372 (400)
Q Consensus 357 ~~~~v~~yd~~~~~W~ 372 (400)
.+.|++|||++....
T Consensus 246 -~g~I~~~dp~~g~~~ 260 (314)
T d1pjxa_ 246 -SSHIEVFGPDGGQPK 260 (314)
T ss_dssp -TTEEEEECTTCBSCS
T ss_pred -CCEEEEEeCCCCEEE
Confidence 257999999987643
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.84 E-value=0.1 Score=43.62 Aligned_cols=202 Identities=10% Similarity=0.054 Sum_probs=108.0
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEE-ECCeEEEEEeecCEEEEEECCCCCeEEccCCCC--c--ceeeeEEEECC
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVV-SGRNTIYCLDIVDIVYVAASMHKILHSLGSLKF--D--FDVSGIAMLDG 199 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~-~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~--~--r~~~~~~~~~~ 199 (400)
..+..+|+.+++-... .+|..- .+++. -++. +++. ..+.+..||+.+++++.+..... + |.+-..+--++
T Consensus 40 ~~I~r~d~~~g~~~~~-~~~~~~--~~i~~~~dg~-l~va-~~~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G 114 (295)
T d2ghsa1 40 RELHELHLASGRKTVH-ALPFMG--SALAKISDSK-QLIA-SDDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSG 114 (295)
T ss_dssp TEEEEEETTTTEEEEE-ECSSCE--EEEEEEETTE-EEEE-ETTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTS
T ss_pred CEEEEEECCCCeEEEE-ECCCCc--EEEEEecCCC-EEEE-EeCccEEeecccceeeEEeeeecCCCcccceeeEECCCC
Confidence 5788999998865432 223222 23333 3555 6654 45789999999999988765432 2 33333333367
Q ss_pred EEEEEcccCCCCCCCeEEEEeCCCCceEEccC-CCCcccccEEEE--eCCEEEEEcCccccCCCCcceEEEEeCCCCc--
Q psy2979 200 FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEP-MKLAVTSPAVVA--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ-- 274 (400)
Q Consensus 200 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-l~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~-- 274 (400)
.+|+..-... .....-..|....++.+.+.. +.. . .+.+. -++.+|+.... ...+++|+...+.
T Consensus 115 ~iw~~~~~~~-~~~~~g~l~~~~~g~~~~~~~~~~~--~-Ng~~~s~d~~~l~~~dt~-------~~~I~~~~~d~~~~~ 183 (295)
T d2ghsa1 115 ALWIGTMGRK-AETGAGSIYHVAKGKVTKLFADISI--P-NSICFSPDGTTGYFVDTK-------VNRLMRVPLDARTGL 183 (295)
T ss_dssp CEEEEEEETT-CCTTCEEEEEEETTEEEEEEEEESS--E-EEEEECTTSCEEEEEETT-------TCEEEEEEBCTTTCC
T ss_pred CEEEEecccc-ccccceeEeeecCCcEEEEeeccCC--c-ceeeecCCCceEEEeecc-------cceeeEeeecccccc
Confidence 8877533221 112223344444555544431 111 1 12222 24467777554 4578888764321
Q ss_pred e----eeccCCCCCc-eeeeEEE-ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEEC----CE
Q psy2979 275 W----QDLAPMLIPR-SGAAICA-LDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVID----GK 344 (400)
Q Consensus 275 W----~~~~~~~~~r-~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~----~~ 344 (400)
+ .....++... .-.++++ -+|.||+..-. ...|.+|||.......+. +|.+ ..+.++++ +.
T Consensus 184 ~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~------~g~V~~~dp~G~~~~~i~-lP~~--~~T~~~FGG~d~~~ 254 (295)
T d2ghsa1 184 PTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG------EGAVDRYDTDGNHIARYE-VPGK--QTTCPAFIGPDASR 254 (295)
T ss_dssp BSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET------TTEEEEECTTCCEEEEEE-CSCS--BEEEEEEESTTSCE
T ss_pred cccceEEEeccCcccccccceEEcCCCCEEeeeeC------CCceEEecCCCcEeeEec-CCCC--ceEEEEEeCCCCCE
Confidence 1 1111222111 2223333 37789987311 347999999887776653 4443 35666663 56
Q ss_pred EEEEcCc
Q psy2979 345 IYVLGGE 351 (400)
Q Consensus 345 lyv~GG~ 351 (400)
|||....
T Consensus 255 LyvTta~ 261 (295)
T d2ghsa1 255 LLVTSAR 261 (295)
T ss_dssp EEEEEBC
T ss_pred EEEEECC
Confidence 9998543
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.81 E-value=0.13 Score=44.26 Aligned_cols=240 Identities=11% Similarity=0.055 Sum_probs=119.6
Q ss_pred EEEEEeccCCCcccceEEEEEcCCCceEEccCCccc-ceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCCc
Q psy2979 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFA-ISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFD 188 (400)
Q Consensus 111 ~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~-~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~ 188 (400)
..+++|+.+ ..+..||..++++..+..+... ..-.+++.. ++..|........+..+|+.++.|.........
T Consensus 20 ~~la~~~~~-----~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~ 94 (371)
T d1k8kc_ 20 TQIAICPNN-----HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRI 94 (371)
T ss_dssp SEEEEECSS-----SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCC
T ss_pred CEEEEEeCC-----CEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccc
Confidence 344556543 4688899888887765544321 122334444 344133334445788889888888766544332
Q ss_pred ceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEe--CCEEEEEcCccccCCCCcce
Q psy2979 189 FDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAH--EGMLYVTGGAILEDGDGIEQ 264 (400)
Q Consensus 189 r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 264 (400)
......+.. +++.++.|+.++. -.++.++...+.+.........+..-..+.. +++.++.|+. ++ .
T Consensus 95 ~~~v~~i~~~p~~~~l~~~s~d~~---i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~---D~----~ 164 (371)
T d1k8kc_ 95 NRAARCVRWAPNEKKFAVGSGSRV---ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC---DF----K 164 (371)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSS---EEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET---TS----C
T ss_pred cccccccccccccccceeecccCc---ceeeeeecccccccccccccccccccccccccccccceecccc---Cc----E
Confidence 222222222 5555666654422 2355556555555443322222222122222 5677788877 54 5
Q ss_pred EEEEeCCCCceeeccC-------CCC---------Cc-eeeeEEE-ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEE-E
Q psy2979 265 VQRYNPKVNQWQDLAP-------MLI---------PR-SGAAICA-LDSCIYVLGGWHASTENTNRVECYHIAENTWE-Y 325 (400)
Q Consensus 265 v~~yd~~~~~W~~~~~-------~~~---------~r-~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~-~ 325 (400)
+..||........... .+. .. .-++++. -++..++.|+. ...+..+|..+.+=. .
T Consensus 165 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~------d~~i~iwd~~~~~~~~~ 238 (371)
T d1k8kc_ 165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH------DSTVCLADADKKMAVAT 238 (371)
T ss_dssp EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET------TTEEEEEEGGGTTEEEE
T ss_pred EEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccccc------CCcceEEeeecccceee
Confidence 7777776544322110 000 00 0122222 25666666665 457888888765421 1
Q ss_pred ccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCC
Q psy2979 326 KSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHL 377 (400)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~ 377 (400)
+.....+ .......-++++++. |. +. ...++.+|.....|.....+
T Consensus 239 ~~~~~~~-v~s~~fs~d~~~la~-g~-d~---~~~~~~~~~~~~~~~~~~~~ 284 (371)
T d1k8kc_ 239 LASETLP-LLAVTFITESSLVAA-GH-DC---FPVLFTYDSAAGKLSFGGRL 284 (371)
T ss_dssp EECSSCC-EEEEEEEETTEEEEE-ET-TS---SCEEEEEETTTTEEEECCCC
T ss_pred eeccccc-ceeeeecCCCCEEEE-Ec-CC---ceEEEEeeCCCceEEEeeee
Confidence 1111111 111112237777665 44 21 24678888888888765543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=96.75 E-value=0.12 Score=43.45 Aligned_cols=219 Identities=10% Similarity=0.063 Sum_probs=114.4
Q ss_pred cceEEEEEcCCCceEEccCCccc---ceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCCcce--e-eeEEE
Q psy2979 124 LRSVEGFCVKTKVWKTLSCLPFA---ISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFD--V-SGIAM 196 (400)
Q Consensus 124 ~~~~~~yd~~~~~w~~~~~~~~~---~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~--~-~~~~~ 196 (400)
...+..+|+.++.+......+.. ...+++++. ++..+|+....+.+..+|+.......+......+. . ..++.
T Consensus 45 ~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~ 124 (314)
T d1pjxa_ 45 AGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAF 124 (314)
T ss_dssp CCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEE
T ss_pred CCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEE
Confidence 34689999999887654322211 112445554 23327777667789999998765444333222211 1 11222
Q ss_pred -ECCEEEEEc--ccC--------CCCCCCeEEEEeCCCCceEEcc-CCCCcccccEEEE-eC-C----EEEEEcCccccC
Q psy2979 197 -LDGFVYAVG--GWD--------GSCRLDSVERYDPTKNEWSYIE-PMKLAVTSPAVVA-HE-G----MLYVTGGAILED 258 (400)
Q Consensus 197 -~~~~iyv~G--G~~--------~~~~~~~v~~yd~~~~~W~~~~-~l~~~~~~~~~~~-~~-~----~iyv~GG~~~~~ 258 (400)
-++.||+.. +.. .......++++++.. ++..+. .+..+ .+.+. -+ + .+|+....
T Consensus 125 d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~~~~~~~~p---NGi~~~~d~d~~~~~lyv~d~~---- 196 (314)
T d1pjxa_ 125 DYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVDTAFQFP---NGIAVRHMNDGRPYQLIVAETP---- 196 (314)
T ss_dssp CTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEEEEEEESSE---EEEEEEECTTSCEEEEEEEETT----
T ss_pred CCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ceeEeeCCccee---eeeEECCCCCcceeEEEEEeec----
Confidence 367899862 211 112234688888754 344432 22222 12222 12 2 58887544
Q ss_pred CCCcceEEEEeCCCCc---eeec-cCCCCCc--eeeeEEE-ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcC
Q psy2979 259 GDGIEQVQRYNPKVNQ---WQDL-APMLIPR--SGAAICA-LDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKE 331 (400)
Q Consensus 259 ~~~~~~v~~yd~~~~~---W~~~-~~~~~~r--~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 331 (400)
...+++||...+. +.++ ..++... .--+++. -+|.||+..-. .+.|.+|||++.+....-..|.
T Consensus 197 ---~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~------~g~I~~~dp~~g~~~~~i~~p~ 267 (314)
T d1pjxa_ 197 ---TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG------SSHIEVFGPDGGQPKMRIRCPF 267 (314)
T ss_dssp ---TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET------TTEEEEECTTCBSCSEEEECSS
T ss_pred ---ccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcC------CCEEEEEeCCCCEEEEEEECCC
Confidence 3578998754332 2211 2222211 1123333 37889987532 4689999998765322112222
Q ss_pred ccCcceEEEEC---CEEEEEcCccCCCCCCCeEEEEECC
Q psy2979 332 KRYRPGIAVID---GKIYVLGGEEGWDGYHDSIECYDVD 367 (400)
Q Consensus 332 ~~~~~~~~~~~---~~lyv~GG~~~~~~~~~~v~~yd~~ 367 (400)
...+.++++ +.|||.... ...|+++|..
T Consensus 268 --~~~t~~afg~d~~~lyVt~~~------~g~i~~~~~~ 298 (314)
T d1pjxa_ 268 --EKPSNLHFKPQTKTIFVTEHE------NNAVWKFEWQ 298 (314)
T ss_dssp --SCEEEEEECTTSSEEEEEETT------TTEEEEEECS
T ss_pred --CCEEEEEEeCCCCEEEEEECC------CCcEEEEECC
Confidence 233445553 369997643 3578888754
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=96.74 E-value=0.008 Score=51.07 Aligned_cols=266 Identities=10% Similarity=0.004 Sum_probs=123.5
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEE-eecCEEEEEECCCCCeEEccCCCC
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCL-DIVDIVYVAASMHKILHSLGSLKF 187 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~ 187 (400)
+..+++++.+ +++.++|+.+++-..--.+|....-.+++.. ++..+|+. ...+.+..||..+.+-........
T Consensus 8 ~~~l~~~~~~-----~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~ 82 (346)
T d1jmxb_ 8 HEYMIVTNYP-----NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS 82 (346)
T ss_dssp CEEEEEEETT-----TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC
T ss_pred CcEEEEEcCC-----CEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccc
Confidence 3445555544 5899999999875432334444333455555 45546776 345789999998775432222111
Q ss_pred c-----ceeeeEEEE--CCEEEEEcccCC------CCCCCeEEEEeCCCCceEEc-cCCCCcc-cccEEEEeCCEEEEEc
Q psy2979 188 D-----FDVSGIAML--DGFVYAVGGWDG------SCRLDSVERYDPTKNEWSYI-EPMKLAV-TSPAVVAHEGMLYVTG 252 (400)
Q Consensus 188 ~-----r~~~~~~~~--~~~iyv~GG~~~------~~~~~~v~~yd~~~~~W~~~-~~l~~~~-~~~~~~~~~~~iyv~G 252 (400)
. ..-.+++.. +..+|+.+.... ......+..+|..+++-... ...+.+. .......-++++|+.+
T Consensus 83 ~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (346)
T d1jmxb_ 83 VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG 162 (346)
T ss_dssp STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES
T ss_pred cccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeC
Confidence 1 111222222 346777654221 11234466677766542211 1111111 1122334567788776
Q ss_pred CccccCCCCcceEEEEeCCCCceeeccCC----------CCCceeeeEEEECCeEEEEcC--cC-------CCCCCCCeE
Q psy2979 253 GAILEDGDGIEQVQRYNPKVNQWQDLAPM----------LIPRSGAAICALDSCIYVLGG--WH-------ASTENTNRV 313 (400)
Q Consensus 253 G~~~~~~~~~~~v~~yd~~~~~W~~~~~~----------~~~r~~~~~~~~~~~iyv~GG--~~-------~~~~~~~~v 313 (400)
+. +..+|..+.+....-+. |..+........++.+.+... .. ........+
T Consensus 163 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (346)
T d1jmxb_ 163 PD----------IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGY 232 (346)
T ss_dssp SS----------EEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEE
T ss_pred Cc----------ceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceE
Confidence 54 45555555544332111 111111001111112111110 00 000002356
Q ss_pred EEEECCCCeEEEccCCcCccCcceEEEE-CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEccc
Q psy2979 314 ECYHIAENTWEYKSPMKEKRYRPGIAVI-DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQIH 392 (400)
Q Consensus 314 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~ 392 (400)
..+|..+.........+.......+... ++..++++.. +.+..||+.+.+....-.. +..-.++++-.+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~v~v~d~~~~~~~~~~~~--~~~~~~va~s~DG 303 (346)
T d1jmxb_ 233 LSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-------NRLAKYDLKQRKLIKAANL--DHTYYCVAFDKKG 303 (346)
T ss_dssp EEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-------SEEEEEETTTTEEEEEEEC--SSCCCEEEECSSS
T ss_pred EEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-------CeEEEEECCCCcEEEEEcC--CCCEEEEEEcCCC
Confidence 6677776664443322222222222222 2222222222 4689999998876554333 3334567777777
Q ss_pred ccccccC
Q psy2979 393 KSQFVDK 399 (400)
Q Consensus 393 ~~~~~~~ 399 (400)
..++++|
T Consensus 304 ~~l~v~~ 310 (346)
T d1jmxb_ 304 DKLYLGG 310 (346)
T ss_dssp SCEEEES
T ss_pred CEEEEEe
Confidence 7777765
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.69 E-value=0.11 Score=43.50 Aligned_cols=187 Identities=10% Similarity=0.029 Sum_probs=89.5
Q ss_pred CCeEEEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCC
Q psy2979 156 GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMK 233 (400)
Q Consensus 156 ~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~ 233 (400)
++. .+++...+.+..+|..+..-... +......-.+..+ ++..++.|+.+ ..+..||..+++......++
T Consensus 28 ~g~-~l~~~~~~~v~i~~~~~~~~~~~--~~~H~~~v~~~~~sp~g~~latg~~d-----g~i~iwd~~~~~~~~~~~~~ 99 (311)
T d1nr0a1 28 AGD-KIQYCNGTSVYTVPVGSLTDTEI--YTEHSHQTTVAKTSPSGYYCASGDVH-----GNVRIWDTTQTTHILKTTIP 99 (311)
T ss_dssp TSS-EEEEEETTEEEEEETTCSSCCEE--ECCCSSCEEEEEECTTSSEEEEEETT-----SEEEEEESSSTTCCEEEEEE
T ss_pred CCC-EEEEEeCCEEEEEECCCCceeEE--EcCCCCCEEEEEEeCCCCeEeccccC-----ceEeeeeeeccccccccccc
Confidence 444 44444455677788765432211 1111111122222 66777778766 35888998887643222222
Q ss_pred Ccccc-cEEE-EeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE--CC-eEEEEcCcCCCCC
Q psy2979 234 LAVTS-PAVV-AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL--DS-CIYVLGGWHASTE 308 (400)
Q Consensus 234 ~~~~~-~~~~-~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~ 308 (400)
..... .+++ .-+++.++.+|. +.. ..+..+|..+.+- ...+.........+.. ++ .+++.|+.
T Consensus 100 ~~~~~v~~v~~s~d~~~l~~~~~---~~~--~~~~v~~~~~~~~--~~~l~~h~~~v~~v~~~~~~~~~l~sgs~----- 167 (311)
T d1nr0a1 100 VFSGPVKDISWDSESKRIAAVGE---GRE--RFGHVFLFDTGTS--NGNLTGQARAMNSVDFKPSRPFRIISGSD----- 167 (311)
T ss_dssp CSSSCEEEEEECTTSCEEEEEEC---CSS--CSEEEEETTTCCB--CBCCCCCSSCEEEEEECSSSSCEEEEEET-----
T ss_pred cccCccccccccccccccccccc---ccc--ccccccccccccc--cccccccccccccccccccceeeeccccc-----
Confidence 11111 1121 225666666654 221 2355566554432 2222211111122223 33 35666665
Q ss_pred CCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcE
Q psy2979 309 NTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSW 371 (400)
Q Consensus 309 ~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W 371 (400)
...+..||..+.+-...-.. ....-..+.. ++++++.|+. + ..+..||..+++-
T Consensus 168 -d~~i~i~d~~~~~~~~~~~~--~~~~i~~v~~~p~~~~l~~~~~-d-----~~v~~~d~~~~~~ 223 (311)
T d1nr0a1 168 -DNTVAIFEGPPFKFKSTFGE--HTKFVHSVRYNPDGSLFASTGG-D-----GTIVLYNGVDGTK 223 (311)
T ss_dssp -TSCEEEEETTTBEEEEEECC--CSSCEEEEEECTTSSEEEEEET-T-----SCEEEEETTTCCE
T ss_pred -cccccccccccccccccccc--ccccccccccCccccccccccc-c-----ccccccccccccc
Confidence 45788999887664332211 1111123333 5667777765 2 3578899887653
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.61 E-value=0.14 Score=42.14 Aligned_cols=215 Identities=12% Similarity=0.104 Sum_probs=110.3
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEE-ccCC--c--ccceeeeEEEEC--CeEEEEE--eecCEEEEEECCCCCeE
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKT-LSCL--P--FAISKHGLVVSG--RNTIYCL--DIVDIVYVAASMHKILH 180 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~-~~~~--~--~~~~~~~~~~~~--~~~iyv~--~~~~~~~~yd~~~~~w~ 180 (400)
+.|+|... ....+.+||+. +++.. ++.. + .......++..+ +. .++. .....+..+++....+.
T Consensus 34 g~i~VaD~-----~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~g~~~~ 106 (279)
T d1q7fa_ 34 NDIIVADT-----NNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD-IIVTERSPTHQIQIYNQYGQFVR 106 (279)
T ss_dssp CCEEEEEG-----GGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE-EEEEECGGGCEEEEECTTSCEEE
T ss_pred CCEEEEEC-----CCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccc-cceeccCCcccccccccccccee
Confidence 45666532 23567888876 34432 2211 1 111223344442 23 3333 34457788887766555
Q ss_pred EccCCCCcceeeeEEE-ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE-eCCEEEEEcCccccC
Q psy2979 181 SLGSLKFDFDVSGIAM-LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA-HEGMLYVTGGAILED 258 (400)
Q Consensus 181 ~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~ 258 (400)
....... ....++++ .++.+|+.... ...+.+|++..+.-.....-........++. -++.+|+....
T Consensus 107 ~~~~~~~-~~p~~~avd~~G~i~v~~~~-----~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~---- 176 (279)
T d1q7fa_ 107 KFGATIL-QHPRGVTVDNKGRIIVVECK-----VMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR---- 176 (279)
T ss_dssp EECTTTC-SCEEEEEECTTSCEEEEETT-----TTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG----
T ss_pred ecCCCcc-cccceeccccCCcEEEEeec-----cceeeEeccCCceeecccccccccccceeeeccceeEEeeecc----
Confidence 5433211 12223333 25678887543 2457888887664444322222222223333 36789998776
Q ss_pred CCCcceEEEEeCCCCceeeccCCCCCceeeeEEE-ECCeEEEEcCcCCCCCCCCeEEEEECCCCe-EEEccCCcCccCcc
Q psy2979 259 GDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICA-LDSCIYVLGGWHASTENTNRVECYHIAENT-WEYKSPMKEKRYRP 336 (400)
Q Consensus 259 ~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~~~~~ 336 (400)
...++.||+..+....+..-.....-.++++ -+|.||+....+ ...+.+|++.-.- ++...... ....+
T Consensus 177 ---~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~-----~~~v~~f~~~G~~~~~~~~~~~-~~~p~ 247 (279)
T d1q7fa_ 177 ---AHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHN-----NFNLTIFTQDGQLISALESKVK-HAQCF 247 (279)
T ss_dssp ---GTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSS-----SCEEEEECTTSCEEEEEEESSC-CSCEE
T ss_pred ---ccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCC-----CcEEEEECCCCCEEEEEeCCCC-CCCEe
Confidence 4589999998876666642221112233333 367899986432 2368899976442 22211211 11223
Q ss_pred eEEEE-CCEEEEEcC
Q psy2979 337 GIAVI-DGKIYVLGG 350 (400)
Q Consensus 337 ~~~~~-~~~lyv~GG 350 (400)
++++- +|+|||..+
T Consensus 248 ~vav~~dG~l~V~~~ 262 (279)
T d1q7fa_ 248 DVALMDDGSVVLASK 262 (279)
T ss_dssp EEEEETTTEEEEEET
T ss_pred EEEEeCCCcEEEEeC
Confidence 44444 789988653
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.58 E-value=0.03 Score=47.01 Aligned_cols=254 Identities=9% Similarity=0.024 Sum_probs=119.7
Q ss_pred ceEEEEEcCCCceEEccCCc-ccceeeeEEEE-CCeEEEEE-eecCEEEEEECCCCCeEEccCCCCc----ceeeeEEEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLP-FAISKHGLVVS-GRNTIYCL-DIVDIVYVAASMHKILHSLGSLKFD----FDVSGIAML 197 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~-~~~~~~~~~~~-~~~~iyv~-~~~~~~~~yd~~~~~w~~~~~~~~~----r~~~~~~~~ 197 (400)
+.+.++|..+.+-...-+++ ......+++.. +++.+|+. .....+..||..+++....-..+.+ .....++..
T Consensus 11 ~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s 90 (337)
T d1pbyb_ 11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALS 90 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEEC
T ss_pred CEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEc
Confidence 58899999987643322222 22333345554 44536666 3457899999998876543322221 111222222
Q ss_pred --CCEEEEEcccCC------CCCCCeEEEEeCCCCceEEccCCCCcccccEEEE-eCC-EEEEEcCccccCCCCcceEEE
Q psy2979 198 --DGFVYAVGGWDG------SCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA-HEG-MLYVTGGAILEDGDGIEQVQR 267 (400)
Q Consensus 198 --~~~iyv~GG~~~------~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~v~~ 267 (400)
++.+|+.+.... ......+..+|..+.+=...-+.+. .-+.++. .++ .+|+.++. ...
T Consensus 91 ~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~----------~~~ 158 (337)
T d1pbyb_ 91 PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR--QITMLAWARDGSKLYGLGRD----------LHV 158 (337)
T ss_dssp TTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS--SCCCEEECTTSSCEEEESSS----------EEE
T ss_pred CCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccC--CceEEEEcCCCCEEEEEcCC----------cce
Confidence 345665543211 1123457778888775333222221 2222332 344 45554432 455
Q ss_pred EeCCCCceeeccCC---CC-----C--ceeeeEEEECC---eEEEEcCcCCCCCC----CCeEEEEECCCCeEEEccCCc
Q psy2979 268 YNPKVNQWQDLAPM---LI-----P--RSGAAICALDS---CIYVLGGWHASTEN----TNRVECYHIAENTWEYKSPMK 330 (400)
Q Consensus 268 yd~~~~~W~~~~~~---~~-----~--r~~~~~~~~~~---~iyv~GG~~~~~~~----~~~v~~yd~~~~~W~~~~~~~ 330 (400)
+|+.+.+-...-+. +. + ...+......+ ..+........... ...+..+|..++.+......+
T Consensus 159 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (337)
T d1pbyb_ 159 MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI 238 (337)
T ss_dssp EETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE
T ss_pred eeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecC
Confidence 66655442211110 00 0 00000000001 11122222111110 346888888888876655444
Q ss_pred CccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCceeeEEEcccccccccC
Q psy2979 331 EKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWLGCVPLQIHKSQFVDK 399 (400)
Q Consensus 331 ~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 399 (400)
............+..++.++. +.+.+||+++++....-. .+..-.++++-.+..++++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~-------~~i~v~d~~~~~~~~~~~--~~~~~~~~~~s~dG~~l~v~~ 298 (337)
T d1pbyb_ 239 MDVFYFSTAVNPAKTRAFGAY-------NVLESFDLEKNASIKRVP--LPHSYYSVNVSTDGSTVWLGG 298 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEEE-------SEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSCEEEEES
T ss_pred CCcceEEEEecccceEEEEcc-------ccEEEEECCCCcEEEEEc--CCCCEEEEEECCCCCEEEEEe
Confidence 444333333333332333322 468899999887555433 333445677767777777664
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.56 E-value=0.037 Score=47.85 Aligned_cols=150 Identities=15% Similarity=0.135 Sum_probs=85.1
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccc-cEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCce
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTS-PAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQW 275 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W 275 (400)
++..+++|+.+ ..+..||..++++..+..+...... .+++. -+++..+.||. |+ .+..||..+..|
T Consensus 18 dg~~la~~~~~-----~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~---D~----~i~vWd~~~~~~ 85 (371)
T d1k8kc_ 18 DRTQIAICPNN-----HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT---DR----NAYVWTLKGRTW 85 (371)
T ss_dssp TSSEEEEECSS-----SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEET---TS----CEEEEEEETTEE
T ss_pred CCCEEEEEeCC-----CEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEEC---CC----eEEEEeeccccc
Confidence 55666677644 3588899988988777655321111 12222 36677777776 54 688899988988
Q ss_pred eeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCc
Q psy2979 276 QDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGE 351 (400)
Q Consensus 276 ~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~ 351 (400)
.....+.........+.. ++..+++|+.++ .-.++.++...+.+.........+..-..+.. +++.++.|+.
T Consensus 86 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~----~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~ 161 (371)
T d1k8kc_ 86 KPTLVILRINRAARCVRWAPNEKKFAVGSGSR----VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 161 (371)
T ss_dssp EEEEECCCCSSCEEEEEECTTSSEEEEEETTS----SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred ccccccccccccccccccccccccceeecccC----cceeeeeecccccccccccccccccccccccccccccceecccc
Confidence 876544432222222333 566666665432 33566677666666544332222222223333 5677777766
Q ss_pred cCCCCCCCeEEEEECCCC
Q psy2979 352 EGWDGYHDSIECYDVDND 369 (400)
Q Consensus 352 ~~~~~~~~~v~~yd~~~~ 369 (400)
+ ..+..||....
T Consensus 162 -D-----~~v~v~~~~~~ 173 (371)
T d1k8kc_ 162 -D-----FKCRIFSAYIK 173 (371)
T ss_dssp -T-----SCEEEEECCCT
T ss_pred -C-----cEEEEEeeccC
Confidence 2 34667776554
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.54 E-value=0.15 Score=41.54 Aligned_cols=214 Identities=16% Similarity=0.118 Sum_probs=108.2
Q ss_pred eeeEEEE-CCeEEEEEe--ecCEEEEEECCCCCeEEccCCCCcceeeeEEE-ECCEEEEEcccCCCCCCCeEEEEeCCCC
Q psy2979 149 KHGLVVS-GRNTIYCLD--IVDIVYVAASMHKILHSLGSLKFDFDVSGIAM-LDGFVYAVGGWDGSCRLDSVERYDPTKN 224 (400)
Q Consensus 149 ~~~~~~~-~~~~iyv~~--~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 224 (400)
.+++++- ++. +|+.. ....+..+++....-.... ....-.-.+++. -++.||+..... ..+..++..+.
T Consensus 16 P~~vavd~dG~-i~v~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~p~gvav~~~g~i~v~d~~~-----~~i~~~~~~~~ 88 (260)
T d1rwia_ 16 PSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVLP-FNGLYQPQGLAVDGAGTVYVTDFNN-----RVVTLAAGSNN 88 (260)
T ss_dssp EEEEEECTTCC-EEEEECSSSCEEEEEC----CEEECC-CCSCCSCCCEEECTTCCEEEEETTT-----EEEEECTTCSC
T ss_pred CCEEEEcCCCC-EEEEEcCCCCEEEEEcCCCceEEEec-cCCccCceEEEEcCCCCEEEeeeee-----ceeeeeeeccc
Confidence 3555555 445 88872 3345677766654322221 111111123333 367888875422 23444444444
Q ss_pred ceEEccCCCCcccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceeecc--CCCCCceeeeEEE-ECCeEEEE
Q psy2979 225 EWSYIEPMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLA--PMLIPRSGAAICA-LDSCIYVL 300 (400)
Q Consensus 225 ~W~~~~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~r~~~~~~~-~~~~iyv~ 300 (400)
.+.. .......-.++++ .+++||+..-. ...+..+++......... .+..|+ +.+. -++.+|+.
T Consensus 89 ~~~~--~~~~~~~p~~iavd~~g~i~v~d~~-------~~~~~~~~~~~~~~~~~~~~~~~~p~---~i~~~~~g~~~v~ 156 (260)
T d1rwia_ 89 QTVL--PFDGLNYPEGLAVDTQGAVYVADRG-------NNRVVKLAAGSKTQTVLPFTGLNDPD---GVAVDNSGNVYVT 156 (260)
T ss_dssp CEEC--CCCSCCSEEEEEECTTCCEEEEEGG-------GTEEEEECTTCSSCEECCCCSCCSCC---EEEECTTCCEEEE
T ss_pred eeee--eeeeeeecccccccccceeEeeccc-------cccccccccccceeeeeeecccCCcc---eeeecCCCCEeee
Confidence 4432 2221122223443 46789987533 346888888665533332 333332 2232 36788887
Q ss_pred cCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE-CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCC
Q psy2979 301 GGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI-DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPS 379 (400)
Q Consensus 301 GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 379 (400)
... ...+.+||+..+.......... ....++++- +|+||+..-. .+.|.+|++..........-..
T Consensus 157 ~~~------~~~i~~~d~~~~~~~~~~~~~~-~~p~gi~~d~~g~l~vsd~~------~~~i~~~~~~~~~~~~~~~~~~ 223 (260)
T d1rwia_ 157 DTD------NNRVVKLEAESNNQVVLPFTDI-TAPWGIAVDEAGTVYVTEHN------TNQVVKLLAGSTTSTVLPFTGL 223 (260)
T ss_dssp EGG------GTEEEEECTTTCCEEECCCSSC-CSEEEEEECTTCCEEEEETT------TTEEEEECTTCSCCEECCCCSC
T ss_pred ccc------cccccccccccceeeeeecccc-CCCccceeeeeeeeeeeecC------CCEEEEEeCCCCeEEEEccCCC
Confidence 654 4689999998776555442211 111233332 5789987643 3578999998877666533211
Q ss_pred CCCceeeEEEcccccc
Q psy2979 380 ARSWLGCVPLQIHKSQ 395 (400)
Q Consensus 380 ~r~~~~~~~~~~~~~~ 395 (400)
..-+++++-.+..++
T Consensus 224 -~~P~~i~~d~~g~l~ 238 (260)
T d1rwia_ 224 -NTPLAVAVDSDRTVY 238 (260)
T ss_dssp -CCEEEEEECTTCCEE
T ss_pred -CCeEEEEEeCCCCEE
Confidence 122455555444333
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.51 E-value=0.18 Score=42.16 Aligned_cols=182 Identities=10% Similarity=-0.017 Sum_probs=90.3
Q ss_pred eecCEEEEEECCCCCeEEccCCCCcc-eeeeEEE-ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEE
Q psy2979 164 DIVDIVYVAASMHKILHSLGSLKFDF-DVSGIAM-LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAV 241 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~~~~r-~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~ 241 (400)
.....+..||..++.......++... .-.+++. -+++.++.+|.+.. ..+.+++..+.+- ...+......-..
T Consensus 77 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~---~~~~v~~~~~~~~--~~~l~~h~~~v~~ 151 (311)
T d1nr0a1 77 DVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE---RFGHVFLFDTGTS--NGNLTGQARAMNS 151 (311)
T ss_dssp ETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS---CSEEEEETTTCCB--CBCCCCCSSCEEE
T ss_pred ccCceEeeeeeeccccccccccccccCcccccccccccccccccccccc---ccccccccccccc--ccccccccccccc
Confidence 55567888898877643222221111 1111221 25566666653321 3356677666542 2222211111122
Q ss_pred EEe--CC-EEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEE
Q psy2979 242 VAH--EG-MLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECY 316 (400)
Q Consensus 242 ~~~--~~-~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~y 316 (400)
+.+ ++ .+++.|+. ++ .+..||..+.+-...- ......-..+.. ++.+++.|+. ...+..|
T Consensus 152 v~~~~~~~~~l~sgs~---d~----~i~i~d~~~~~~~~~~--~~~~~~i~~v~~~p~~~~l~~~~~------d~~v~~~ 216 (311)
T d1nr0a1 152 VDFKPSRPFRIISGSD---DN----TVAIFEGPPFKFKSTF--GEHTKFVHSVRYNPDGSLFASTGG------DGTIVLY 216 (311)
T ss_dssp EEECSSSSCEEEEEET---TS----CEEEEETTTBEEEEEE--CCCSSCEEEEEECTTSSEEEEEET------TSCEEEE
T ss_pred ccccccceeeeccccc---cc----cccccccccccccccc--ccccccccccccCccccccccccc------ccccccc
Confidence 222 33 45677776 44 6888998765533221 111111122222 6677777765 4578889
Q ss_pred ECCCCeEEEc-cCCcCccCcc----eEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcE
Q psy2979 317 HIAENTWEYK-SPMKEKRYRP----GIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSW 371 (400)
Q Consensus 317 d~~~~~W~~~-~~~~~~~~~~----~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W 371 (400)
|..++.-... ........+| ..+.+ +++.++.||. + ..|.+||..+++-
T Consensus 217 d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~-D-----g~v~iwd~~t~~~ 272 (311)
T d1nr0a1 217 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA-D-----KTIKIWNVATLKV 272 (311)
T ss_dssp ETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET-T-----SEEEEEETTTTEE
T ss_pred ccccccccccccccccccccccccccccccCCCCCEEEEEeC-C-----CeEEEEECCCCcE
Confidence 9887654332 2111111111 12333 5677777776 3 3689999988753
|
| >d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Collagenase (MMP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.50 E-value=0.07 Score=41.56 Aligned_cols=145 Identities=10% Similarity=0.039 Sum_probs=84.6
Q ss_pred eeEEEECCeEEEEEeecCEEEEEECCCCCeEE--c----cCCCCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeC
Q psy2979 150 HGLVVSGRNTIYCLDIVDIVYVAASMHKILHS--L----GSLKFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDP 221 (400)
Q Consensus 150 ~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~--~----~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~ 221 (400)
-+++..++. +|++. ...+|..+........ + +.+|..- -++... ++++|++-| +..++|+.
T Consensus 15 DAv~~~~G~-~y~Fk-g~~~wr~~~~~~~~~p~~i~~~w~glp~~I--DAAf~~~~~~~~yfFkG-------~~y~~y~~ 83 (195)
T d1su3a2 15 DAITTIRGE-VMFFK-DRFYMRTNPFYPEVELNFISVFWPQLPNGL--EAAYEFADRDEVRFFKG-------NKYWAVQG 83 (195)
T ss_dssp SEEEEETTE-EEEEE-TTEEEECCTTSSSCEEEEGGGTCTTSCSSC--CEEEEEGGGTEEEEEET-------TEEEEEET
T ss_pred eEEEEcCCe-EEEEe-CCEEEEeeCCCCccCccchHhhCcCCCCcc--cceEEecCCcEEEEECC-------cEEEEEcC
Confidence 367778888 99984 4456766655544321 1 1223221 122223 579999988 56888874
Q ss_pred CCCce---EEcc---CCCCcccccEEE-E--eCCEEEEEcCccccCCCCcceEEEEeCCCCceee-----cc----CCCC
Q psy2979 222 TKNEW---SYIE---PMKLAVTSPAVV-A--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQD-----LA----PMLI 283 (400)
Q Consensus 222 ~~~~W---~~~~---~l~~~~~~~~~~-~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~-----~~----~~~~ 283 (400)
.+-.. ..+. .+|.....-.++ . -++++|++-|. ..++||..+++-.. +. .+|
T Consensus 84 ~~~~~g~p~~i~~~~G~p~~~~~idaa~~~~~~~~~Y~FkG~---------~y~ry~~~~~~vd~gyPk~I~~~w~Gvp- 153 (195)
T d1su3a2 84 QNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVAN---------KYWRYDEYKRSMDPGYPKMIAHDFPGIG- 153 (195)
T ss_dssp TEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEETT---------EEEEEETTTTEECSSCSEEHHHHSTTSC-
T ss_pred CccccCCCccchhhcCCCCCccccccccccCCCCeEEEEeCC---------EEEEEeccCccccCCcccccccccCCCC-
Confidence 32211 1111 233332222233 2 26799999887 78999988765321 11 222
Q ss_pred CceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEE
Q psy2979 284 PRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWE 324 (400)
Q Consensus 284 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 324 (400)
..--++...++++|++-|. ..++||+.+.+-.
T Consensus 154 -~~iDAAf~~~g~~YfFkg~--------~y~r~~~~~~~v~ 185 (195)
T d1su3a2 154 -HKVDAVFMKDGFFYFFHGT--------RQYKFDPKTKRIL 185 (195)
T ss_dssp -SCCSEEEEETTEEEEEETT--------EEEEEETTTTEEE
T ss_pred -CCccEEEEECCeEEEEECC--------EEEEEeCCcCEEE
Confidence 2233455679999999874 7999998877643
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.37 E-value=0.19 Score=40.84 Aligned_cols=219 Identities=16% Similarity=0.121 Sum_probs=112.5
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEEC-CCCCeEEccCCCC
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAAS-MHKILHSLGSLKF 187 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~-~~~~w~~~~~~~~ 187 (400)
+.+++..... ...+..+++....-... ........+++++. ++. ||+....+....+.. .+..+. .....
T Consensus 25 G~i~v~~~~~----~~~i~~~~~~~~~~~~~-~~~~~~~p~gvav~~~g~-i~v~d~~~~~i~~~~~~~~~~~--~~~~~ 96 (260)
T d1rwia_ 25 GNVYVTSEGM----YGRVVKLATGSTGTTVL-PFNGLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQTV--LPFDG 96 (260)
T ss_dssp CCEEEEECSS----SCEEEEEC----CEEEC-CCCSCCSCCCEEECTTCC-EEEEETTTEEEEECTTCSCCEE--CCCCS
T ss_pred CCEEEEEcCC----CCEEEEEcCCCceEEEe-ccCCccCceEEEEcCCCC-EEEeeeeeceeeeeeeccceee--eeeee
Confidence 4566664322 13455555544332221 11211222445554 556 888855555554443 333332 11111
Q ss_pred cceeeeEEE-ECCEEEEEcccCCCCCCCeEEEEeCCCCceEEcc--CCCCcccccEEEE-eCCEEEEEcCccccCCCCcc
Q psy2979 188 DFDVSGIAM-LDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIE--PMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIE 263 (400)
Q Consensus 188 ~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~--~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~ 263 (400)
...-.++++ -++.||+..-. ...+..+++......... .+..+ .+.+. -++.+|+.... ..
T Consensus 97 ~~~p~~iavd~~g~i~v~d~~-----~~~~~~~~~~~~~~~~~~~~~~~~p---~~i~~~~~g~~~v~~~~-------~~ 161 (260)
T d1rwia_ 97 LNYPEGLAVDTQGAVYVADRG-----NNRVVKLAAGSKTQTVLPFTGLNDP---DGVAVDNSGNVYVTDTD-------NN 161 (260)
T ss_dssp CCSEEEEEECTTCCEEEEEGG-----GTEEEEECTTCSSCEECCCCSCCSC---CEEEECTTCCEEEEEGG-------GT
T ss_pred eeecccccccccceeEeeccc-----cccccccccccceeeeeeecccCCc---ceeeecCCCCEeeeccc-------cc
Confidence 112223333 25688886321 245777777765433332 22222 23333 36788887654 34
Q ss_pred eEEEEeCCCCceeecc--CCCCCceeeeEEE-ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEE
Q psy2979 264 QVQRYNPKVNQWQDLA--PMLIPRSGAAICA-LDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAV 340 (400)
Q Consensus 264 ~v~~yd~~~~~W~~~~--~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~ 340 (400)
.+.+||+......... .+..| .+++. -+|.||+..-. ...+.+|++..........-. ...+...+
T Consensus 162 ~i~~~d~~~~~~~~~~~~~~~~p---~gi~~d~~g~l~vsd~~------~~~i~~~~~~~~~~~~~~~~~--~~~P~~i~ 230 (260)
T d1rwia_ 162 RVVKLEAESNNQVVLPFTDITAP---WGIAVDEAGTVYVTEHN------TNQVVKLLAGSTTSTVLPFTG--LNTPLAVA 230 (260)
T ss_dssp EEEEECTTTCCEEECCCSSCCSE---EEEEECTTCCEEEEETT------TTEEEEECTTCSCCEECCCCS--CCCEEEEE
T ss_pred cccccccccceeeeeeccccCCC---ccceeeeeeeeeeeecC------CCEEEEEeCCCCeEEEEccCC--CCCeEEEE
Confidence 7999999877655543 22222 34444 36789988743 568999999877666554222 12333444
Q ss_pred E--CCEEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 341 I--DGKIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 341 ~--~~~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
+ +|.|||.-.. .+.|.+++...
T Consensus 231 ~d~~g~l~vad~~------~~rI~~i~~~~ 254 (260)
T d1rwia_ 231 VDSDRTVYVADRG------NDRVVKLTSLE 254 (260)
T ss_dssp ECTTCCEEEEEGG------GTEEEEECCCG
T ss_pred EeCCCCEEEEECC------CCEEEEEeCCC
Confidence 4 5789997433 35777777543
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.36 E-value=0.23 Score=41.75 Aligned_cols=215 Identities=11% Similarity=0.011 Sum_probs=104.6
Q ss_pred EEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCCCCceEE
Q psy2979 152 LVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPTKNEWSY 228 (400)
Q Consensus 152 ~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 228 (400)
++.. ++..|++......+..||....+......+...........+ ++.+++.|+.+ ..+..||..+++-..
T Consensus 103 v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----~~i~~~~~~~~~~~~ 177 (337)
T d1gxra_ 103 CKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD-----GNIAVWDLHNQTLVR 177 (337)
T ss_dssp EEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEE
T ss_pred EEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccc-----ccccccccccccccc
Confidence 3444 334133335556788899876665444333221111111112 45556666544 357888888775433
Q ss_pred ccCCCCcccccEEE-EeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCeEEEEcCcCCC
Q psy2979 229 IEPMKLAVTSPAVV-AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSCIYVLGGWHAS 306 (400)
Q Consensus 229 ~~~l~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~ 306 (400)
......... .+++ ..++..+++|+. + ..+..||..+.+-...-..+.+ -.+++.. ++..++.|+.
T Consensus 178 ~~~~~~~~v-~~l~~s~~~~~~~~~~~---d----~~v~i~d~~~~~~~~~~~~~~~--i~~l~~~~~~~~l~~~~~--- 244 (337)
T d1gxra_ 178 QFQGHTDGA-SCIDISNDGTKLWTGGL---D----NTVRSWDLREGRQLQQHDFTSQ--IFSLGYCPTGEWLAVGME--- 244 (337)
T ss_dssp EECCCSSCE-EEEEECTTSSEEEEEET---T----SEEEEEETTTTEEEEEEECSSC--EEEEEECTTSSEEEEEET---
T ss_pred ccccccccc-ccccccccccccccccc---c----ccccccccccceeecccccccc--eEEEEEcccccccceecc---
Confidence 322111111 1222 235666677766 4 3788899876652222122211 1222222 5666677765
Q ss_pred CCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCCCCCce
Q psy2979 307 TENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPSARSWL 384 (400)
Q Consensus 307 ~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~ 384 (400)
...+..||..+..-........ ....+.+ +++.++.|+. + ..|.+||..+++ .+..+.....-.
T Consensus 245 ---d~~i~i~d~~~~~~~~~~~~~~---~i~~v~~s~~g~~l~s~s~-D-----g~i~iwd~~~~~--~~~~~~~~~~v~ 310 (337)
T d1gxra_ 245 ---SSNVEVLHVNKPDKYQLHLHES---CVLSLKFAYCGKWFVSTGK-D-----NLLNAWRTPYGA--SIFQSKESSSVL 310 (337)
T ss_dssp ---TSCEEEEETTSSCEEEECCCSS---CEEEEEECTTSSEEEEEET-T-----SEEEEEETTTCC--EEEEEECSSCEE
T ss_pred ---cccccccccccccccccccccc---ccceEEECCCCCEEEEEeC-C-----CeEEEEECCCCC--EEEEccCCCCEE
Confidence 4578889987776443322111 1122222 6677777766 2 468889987654 222222222223
Q ss_pred eeEEEccccccccc
Q psy2979 385 GCVPLQIHKSQFVD 398 (400)
Q Consensus 385 ~~~~~~~~~~~~~~ 398 (400)
+++...+..+++.+
T Consensus 311 ~~~~s~d~~~l~t~ 324 (337)
T d1gxra_ 311 SCDISVDDKYIVTG 324 (337)
T ss_dssp EEEECTTSCEEEEE
T ss_pred EEEEeCCCCEEEEE
Confidence 34444555555544
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.28 E-value=0.24 Score=41.09 Aligned_cols=132 Identities=8% Similarity=0.051 Sum_probs=69.9
Q ss_pred CCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCe
Q psy2979 245 EGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENT 322 (400)
Q Consensus 245 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 322 (400)
++.+++.|+. + ..+..||..+.+-... +.........+.. ++.+++.|+. ...+..||.....
T Consensus 195 ~~~~~~~~~~---d----~~v~i~d~~~~~~~~~--~~~h~~~i~~v~~~p~~~~l~s~s~------d~~i~~~~~~~~~ 259 (340)
T d1tbga_ 195 DTRLFVSGAC---D----ASAKLWDVREGMCRQT--FTGHESDINAICFFPNGNAFATGSD------DATCRLFDLRADQ 259 (340)
T ss_dssp TSSEEEEEET---T----TEEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEET------TSCEEEEETTTTE
T ss_pred ccceeEEeec---C----ceEEEEECCCCcEEEE--EeCCCCCeEEEEECCCCCEEEEEeC------CCeEEEEeecccc
Confidence 4566666666 4 3688888876543221 1111111112222 5677777765 4568889988777
Q ss_pred EEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCcEEEecCCCC-CCCceeeEEEcccccccccC
Q psy2979 323 WEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLPS-ARSWLGCVPLQIHKSQFVDK 399 (400)
Q Consensus 323 W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~r~~~~~~~~~~~~~~~~~~ 399 (400)
....-...........+.+ ++++++.|+. + ..|.+||..+.+ .+..++. ...-.+++...+..+++.+|
T Consensus 260 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~-d-----g~i~iwd~~~~~--~~~~~~~H~~~V~~l~~s~d~~~l~s~s 331 (340)
T d1tbga_ 260 ELMTYSHDNIICGITSVSFSKSGRLLLAGYD-D-----FNCNVWDALKAD--RAGVLAGHDNRVSCLGVTDDGMAVATGS 331 (340)
T ss_dssp EEEEECCTTCCSCEEEEEECSSSCEEEEEET-T-----SCEEEEETTTCC--EEEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred cccccccccccCceEEEEECCCCCEEEEEEC-C-----CEEEEEECCCCc--EEEEEcCCCCCEEEEEEeCCCCEEEEEc
Confidence 5543333322222233333 5677777776 2 468899987654 3333332 11223344445556665543
|
| >d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Collagenase-3 (MMP-13), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.18 E-value=0.18 Score=38.94 Aligned_cols=144 Identities=12% Similarity=0.036 Sum_probs=83.8
Q ss_pred eEEEECCeEEEEEeecCEEEEEECCCCCeEEc------cCCCCcceeeeEEEE--CCEEEEEcccCCCCCCCeEEEEeCC
Q psy2979 151 GLVVSGRNTIYCLDIVDIVYVAASMHKILHSL------GSLKFDFDVSGIAML--DGFVYAVGGWDGSCRLDSVERYDPT 222 (400)
Q Consensus 151 ~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~------~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 222 (400)
+++.+++. +|++. ...+|.++.....+... +.+|..- . ++... ++++|++-| +.+++|+..
T Consensus 13 Av~~~~g~-~y~Fk-g~~~wr~~~~~~~~~p~~i~~~w~~lp~~I-D-AAf~~~~~~~~yffkg-------~~~w~y~~~ 81 (192)
T d1pexa_ 13 AITSLRGE-TMIFK-DRFFWRLHPQQVDAELFLTKSFWPELPNRI-D-AAYEHPSHDLIFIFRG-------RKFWALNGY 81 (192)
T ss_dssp EEEEETTE-EEEEE-TTEEEEECSSSSCCEEEEHHHHCTTSCSSC-C-EEEEETTTTEEEEEET-------TEEEEESTT
T ss_pred EEEEcCCe-EEEEE-CCEEEEEcCCCCCCcccchhhhCcCCCCcc-c-ceEEEcCCCEEEEEcC-------CEEEEEcCC
Confidence 66778888 99984 45667776554433321 2233221 1 22222 678998877 567888755
Q ss_pred CCce---EEccC--CCCcccccEEE-E--eCCEEEEEcCccccCCCCcceEEEEeCCCCceeec---------cCCCCCc
Q psy2979 223 KNEW---SYIEP--MKLAVTSPAVV-A--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDL---------APMLIPR 285 (400)
Q Consensus 223 ~~~W---~~~~~--l~~~~~~~~~~-~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~---------~~~~~~r 285 (400)
+-.. ..+.. +|.....-.++ . .++++|++-|. ..++||..++.-... +.+|.
T Consensus 82 ~~~~gyPk~i~~~~~~~~~~~idaA~~~~~~~~~y~Fkg~---------~y~~y~~~~~~~~~~~pk~I~~~w~gvp~-- 150 (192)
T d1pexa_ 82 DILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGN---------QVWRYDDTNHIMDKDYPRLIEEDFPGIGD-- 150 (192)
T ss_dssp CCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEETT---------EEEEEETTTTEECSSCCCBHHHHSTTSCS--
T ss_pred cccCCCCeEeeeeecCCCCCCccEEEEECCCCEEEEEeCC---------EEEEEcCccccccCCCcEEHhhcCCCCCC--
Confidence 4332 12222 22222222233 3 36899999886 689999876642211 12222
Q ss_pred eeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEE
Q psy2979 286 SGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWE 324 (400)
Q Consensus 286 ~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 324 (400)
.-.++...++++|++-|. ..++||..+++=.
T Consensus 151 ~vdAa~~~~g~~YfF~g~--------~y~r~~~~~~~v~ 181 (192)
T d1pexa_ 151 KVDAVYEKNGYIYFFNGP--------IQFEYSIWSNRIV 181 (192)
T ss_dssp CCSEEEEETTEEEEEETT--------EEEEEETTTTEEE
T ss_pred CceEEEEeCCEEEEEECC--------EEEEEeCCcCeEc
Confidence 223445679999999864 7999998877643
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.17 E-value=0.15 Score=42.36 Aligned_cols=97 Identities=13% Similarity=0.194 Sum_probs=56.2
Q ss_pred cceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE
Q psy2979 262 IEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI 341 (400)
Q Consensus 262 ~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 341 (400)
...+..+|..+..+......+............+..++.++ .+.+..||..+++.......+ ....+++.-
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~s 288 (337)
T d1pbyb_ 218 RTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-------YNVLESFDLEKNASIKRVPLP--HSYYSVNVS 288 (337)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-------ESEEEEEETTTTEEEEEEECS--SCCCEEEEC
T ss_pred CccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc-------cccEEEEECCCCcEEEEEcCC--CCEEEEEEC
Confidence 45678888888877665544444444444444443333333 357889999998866543332 222233222
Q ss_pred -CCE-EEEEcCccCCCCCCCeEEEEECCCCcEEEecC
Q psy2979 342 -DGK-IYVLGGEEGWDGYHDSIECYDVDNDSWEIMSH 376 (400)
Q Consensus 342 -~~~-lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 376 (400)
+|+ +|+ |+. .+.|.+||.++. +.+..
T Consensus 289 ~dG~~l~v-~~~------~~~i~v~D~~t~--~~v~~ 316 (337)
T d1pbyb_ 289 TDGSTVWL-GGA------LGDLAAYDAETL--EKKGQ 316 (337)
T ss_dssp TTSCEEEE-ESB------SSEEEEEETTTC--CEEEE
T ss_pred CCCCEEEE-EeC------CCcEEEEECCCC--cEEEE
Confidence 454 555 555 257999999874 44443
|
| >d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Gelatinase B (MMP-9) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.94 E-value=0.23 Score=38.39 Aligned_cols=145 Identities=10% Similarity=0.073 Sum_probs=82.2
Q ss_pred eeEEEECCeEEEEEeecCEEEEEECCCCCeEE----c----cCCCCcceeeeEEE-ECCEEEEEcccCCCCCCCeEEEEe
Q psy2979 150 HGLVVSGRNTIYCLDIVDIVYVAASMHKILHS----L----GSLKFDFDVSGIAM-LDGFVYAVGGWDGSCRLDSVERYD 220 (400)
Q Consensus 150 ~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~----~----~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd 220 (400)
-+++..++. +|++. ...+|+++........ + +.+|.. -..+... .++++|++-| +.+++|+
T Consensus 10 DAv~~~~G~-~y~Fk-g~~ywr~~~~~~~~~~~P~~I~~~w~glp~~-IDAAf~~~~~~k~yfFkg-------~~~~~y~ 79 (195)
T d1itva_ 10 DAIAEIGNQ-LYLFK-DGKYWRFSEGRGSRPQGPFLIADKWPALPRK-LDSVFEEPLSKKLFFFSG-------RQVWVYT 79 (195)
T ss_dssp SEEEEETTE-EEEEE-TTEEEEECCSSSCCCEEEEEHHHHCTTSCSS-CSEEEECTTTCCEEEEET-------TEEEEEE
T ss_pred ceEEEeCCE-EEEEE-CCEEEEEeCCCCCcCCCcEEeeeecCCCCCC-ccEEEEECCCCEEEEEec-------CEEEEEc
Confidence 356677888 99983 5677788755433221 1 223321 1111111 2578999876 4678887
Q ss_pred CCCCce-EEccC--CCCcccccEEE--EeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccC------CC-CCceee
Q psy2979 221 PTKNEW-SYIEP--MKLAVTSPAVV--AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAP------ML-IPRSGA 288 (400)
Q Consensus 221 ~~~~~W-~~~~~--l~~~~~~~~~~--~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~------~~-~~r~~~ 288 (400)
-..-.. ..+.. +|.....-.++ .-++++|++-|. ..++||..+++-..-.| .+ .|..-.
T Consensus 80 ~~~~~~Pk~i~~~g~p~~~~~idaa~~~~~g~~Y~FkG~---------~y~ryd~~~~~v~~gyPk~i~~~w~gvp~~id 150 (195)
T d1itva_ 80 GASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSGR---------RLWRFDVKAQMVDPRSASEVDRMFPGVPLDTH 150 (195)
T ss_dssp TTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEETT---------EEEEEETTTTEECGGGCEEHHHHSTTSCSSCS
T ss_pred CccccCCEEhhhcCCCCCchheeeEEEcCCCeEEEEecc---------EEEEEeCCcccccCCCccchhhhcCCCCCCCc
Confidence 432111 12222 33332222233 236899999776 79999998775332211 11 223345
Q ss_pred eEEEECCeEEEEcCcCCCCCCCCeEEEEECCCC
Q psy2979 289 AICALDSCIYVLGGWHASTENTNRVECYHIAEN 321 (400)
Q Consensus 289 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~ 321 (400)
++...++.+|++-|. ..++||..+.
T Consensus 151 aAf~~~~~~Yffkg~--------~y~r~~~~~~ 175 (195)
T d1itva_ 151 DVFQFREKAYFCQDR--------FYWRVSSRSE 175 (195)
T ss_dssp EEEEETTEEEEEETT--------EEEEEECCTT
T ss_pred EEEEeCCcEEEEECC--------EEEEEcCCce
Confidence 566679999999864 7889987655
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=95.76 E-value=0.24 Score=43.62 Aligned_cols=184 Identities=10% Similarity=0.068 Sum_probs=99.7
Q ss_pred eecCEEEEEECCCCCeEEccCCCCcceeeeEEEE-CC-EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEE
Q psy2979 164 DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAML-DG-FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAV 241 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~ 241 (400)
.....+..+|..+++-... ++....-++++.- ++ .+|+. +.+ ..+..||..+++-.....++........
T Consensus 39 ~d~g~v~v~D~~t~~v~~~--~~~g~~~~~v~fSpDG~~l~~~-s~d-----g~v~~~d~~t~~~~~~~~i~~~~~~~~~ 110 (432)
T d1qksa2 39 RDAGQIALIDGSTYEIKTV--LDTGYAVHISRLSASGRYLFVI-GRD-----GKVNMIDLWMKEPTTVAEIKIGSEARSI 110 (432)
T ss_dssp TTTTEEEEEETTTCCEEEE--EECSSCEEEEEECTTSCEEEEE-ETT-----SEEEEEETTSSSCCEEEEEECCSEEEEE
T ss_pred cCCCEEEEEECCCCcEEEE--EeCCCCeeEEEECCCCCEEEEE-cCC-----CCEEEEEeeCCCceEEEEEecCCCCCCe
Confidence 5556788999988775432 2333333333333 44 56654 433 4688999988765544444433322233
Q ss_pred EE-----eCC-EEEEEcCccccCCCCcceEEEEeCCCCceeeccCC-----------CCCceeeeEEEECCeE-EEEcCc
Q psy2979 242 VA-----HEG-MLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPM-----------LIPRSGAAICALDSCI-YVLGGW 303 (400)
Q Consensus 242 ~~-----~~~-~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~-----------~~~r~~~~~~~~~~~i-yv~GG~ 303 (400)
+. -+| .+|+.+.. ...+..||..+.+-....+. +.++....++..++.. ++....
T Consensus 111 ~~s~~~SpDG~~l~vs~~~-------~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~ 183 (432)
T d1qksa2 111 ETSKMEGWEDKYAIAGAYW-------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE 183 (432)
T ss_dssp EECCSTTCTTTEEEEEEEE-------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred EEecccCCCCCEEEEEcCC-------CCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc
Confidence 22 134 57777665 34789999988775543211 2233333333334544 443332
Q ss_pred CCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE-CCE-EEEEcCccCCCCCCCeEEEEECCCCcEEEe
Q psy2979 304 HASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI-DGK-IYVLGGEEGWDGYHDSIECYDVDNDSWEIM 374 (400)
Q Consensus 304 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~-lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 374 (400)
...+..+|..+.+-..+..++.+...+.+... +|+ +|+.... .+.+...|..+.+....
T Consensus 184 ------~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~------~~~v~v~d~~~~~~~~~ 244 (432)
T d1qksa2 184 ------TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANA------RNKLVVIDTKEGKLVAI 244 (432)
T ss_dssp ------TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGG------GTEEEEEETTTTEEEEE
T ss_pred ------CCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccc------cceEEEeecccceEEEE
Confidence 46788888877654444444444443443333 454 5555443 35677788777655433
|
| >d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Gelatinase A (MMP-2), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.48 E-value=0.39 Score=37.26 Aligned_cols=143 Identities=12% Similarity=0.140 Sum_probs=79.1
Q ss_pred eEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceE---Ec----cCCCCcccccEEEE-eCCEEEEEcCccccCCCCcce
Q psy2979 193 GIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWS---YI----EPMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQ 264 (400)
Q Consensus 193 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~---~~----~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~ 264 (400)
+++.+++.+|++=| ..+++++.....+. .+ +.+|... ..+... .++++|.+-|. .
T Consensus 17 Av~~~~G~~y~Fkg-------~~~wr~~~~~~~~~~P~~I~~~w~glp~~I-dAA~~~~~~~~~yffkg~---------~ 79 (200)
T d1gena_ 17 GIAQIRGEIFFFKD-------RFIWRTVTPRDKPMGPLLVATFWPELPEKI-DAVYEAPQEEKAVFFAGN---------E 79 (200)
T ss_dssp EEEEETTEEEEEET-------TEEEEESSTTSCCEEEEEGGGTCTTSCSCC-SEEEEETTTTEEEEEETT---------E
T ss_pred EEEecCCeEEEEeC-------CEEEEEcCCCCCCCCcEehhhccCCCCCCc-eEEEEECCCCeEEEecCc---------e
Confidence 56677999999976 33554433322221 11 2344332 222222 47889999887 6
Q ss_pred EEEEeCCCCce---eeccC--CCCCceee-eEEE--ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEE-----Ecc----
Q psy2979 265 VQRYNPKVNQW---QDLAP--MLIPRSGA-AICA--LDSCIYVLGGWHASTENTNRVECYHIAENTWE-----YKS---- 327 (400)
Q Consensus 265 v~~yd~~~~~W---~~~~~--~~~~r~~~-~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~-----~~~---- 327 (400)
.++|+-.+... ..+.. +|...... ++.. .++++|++-|. ..++||..+++=. .+.
T Consensus 80 ~~~y~~~~~~~gyPk~i~~~g~p~~~~~iDAA~~~~~~g~~YfFkg~--------~y~ryd~~~~~vd~~yPk~I~~~w~ 151 (200)
T d1gena_ 80 YWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGD--------KFWRYNEVKKKMDPGFPKLIADAWN 151 (200)
T ss_dssp EEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEETT--------EEEEEETTTTEECSSCCEEHHHHSS
T ss_pred EEEEcCcccccCCCceehhcCCCCCccceeeEEEECCCCeEEEEeCc--------EEEEeccccceeccCcceehhhccC
Confidence 89997432211 11111 22111112 2223 26799999874 7999999877521 111
Q ss_pred CCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 328 PMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 328 ~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
.+| ..--++... ++++|++-|. ..++||..+.+
T Consensus 152 gvp--~~idAAf~~~~~g~~Yff~g~--------~y~r~d~~~~~ 186 (200)
T d1gena_ 152 AIP--DNLDAVVDLQGGGHSYFFKGA--------YYLKLENQSLK 186 (200)
T ss_dssp SCC--SSCSEEEECTTTCEEEEEETT--------EEEEEETTEEE
T ss_pred CCC--CCccEEEEecCCCEEEEEECC--------EEEEEECCceE
Confidence 122 222234333 6899999885 67899876544
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=95.38 E-value=0.4 Score=39.75 Aligned_cols=94 Identities=12% Similarity=0.048 Sum_probs=50.0
Q ss_pred cceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEE
Q psy2979 262 IEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAV 340 (400)
Q Consensus 262 ~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~ 340 (400)
...+..+|..+.........+........... ++..++++. .+.+..||+.+++....-.... ...+++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~v~d~~~~~~~~~~~~~~--~~~~va~ 299 (346)
T d1jmxb_ 229 LYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-------LNRLAKYDLKQRKLIKAANLDH--TYYCVAF 299 (346)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-------ESEEEEEETTTTEEEEEEECSS--CCCEEEE
T ss_pred CceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-------CCeEEEEECCCCcEEEEEcCCC--CEEEEEE
Confidence 34566777776664443322223233333332 333233332 4578999999988655433322 1222222
Q ss_pred E-CCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 341 I-DGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 341 ~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
- +|+.+.+||. + ..|.+||+++.+
T Consensus 300 s~DG~~l~v~~~-d-----~~v~v~D~~t~~ 324 (346)
T d1jmxb_ 300 DKKGDKLYLGGT-F-----NDLAVFNPDTLE 324 (346)
T ss_dssp CSSSSCEEEESB-S-----SEEEEEETTTTE
T ss_pred cCCCCEEEEEeC-C-----CcEEEEECccCC
Confidence 2 5655555666 2 479999998764
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=95.30 E-value=0.66 Score=38.77 Aligned_cols=184 Identities=13% Similarity=0.042 Sum_probs=99.6
Q ss_pred ceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEe-----ecCEEEEEECCCCCeEEccCC-CC-cceeeeEEE
Q psy2979 125 RSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLD-----IVDIVYVAASMHKILHSLGSL-KF-DFDVSGIAM 196 (400)
Q Consensus 125 ~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~-----~~~~~~~yd~~~~~w~~~~~~-~~-~r~~~~~~~ 196 (400)
..+..+++..+....... +.....++++.. ++. +|+.. ....+..+++.+......... .. .+.+-.++.
T Consensus 61 g~I~ri~p~g~~~~~~~~-~~~~~p~gla~~~dG~-l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d 138 (319)
T d2dg1a1 61 GNIFKINPETKEIKRPFV-SHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFD 138 (319)
T ss_dssp CEEEEECTTTCCEEEEEE-CSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEEC
T ss_pred CEEEEEECCCCeEEEEEe-CCCCCeeEEEECCCCC-EEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEE
Confidence 467888888765443211 111123455554 556 88872 345688888888776554332 21 222222333
Q ss_pred ECCEEEEEcccC-CCCCCCeEEEEeCCCCceEEcc-CCCCcccccEEEE--eCCEEEEEcCccccCCCCcceEEEEeCCC
Q psy2979 197 LDGFVYAVGGWD-GSCRLDSVERYDPTKNEWSYIE-PMKLAVTSPAVVA--HEGMLYVTGGAILEDGDGIEQVQRYNPKV 272 (400)
Q Consensus 197 ~~~~iyv~GG~~-~~~~~~~v~~yd~~~~~W~~~~-~l~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~ 272 (400)
-++.+|+..-.. .......++++++..+..+.+. .+..+ .+.+. -++.+|+.-.. .+.+++||...
T Consensus 139 ~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~p---nGia~s~dg~~lyvad~~-------~~~I~~~d~~~ 208 (319)
T d2dg1a1 139 SKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVA---NGIALSTDEKVLWVTETT-------ANRLHRIALED 208 (319)
T ss_dssp TTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSE---EEEEECTTSSEEEEEEGG-------GTEEEEEEECT
T ss_pred eccceeecccccccccCcceeEEEecccceeEEEeecccee---eeeeeccccceEEEeccc-------CCceEEEEEcC
Confidence 367888753221 1223456889999887776553 22221 12333 24468988654 45799998654
Q ss_pred Cc---ee---ecc-CCCCCceeeeEEE-ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEc
Q psy2979 273 NQ---WQ---DLA-PMLIPRSGAAICA-LDSCIYVLGGWHASTENTNRVECYHIAENTWEYK 326 (400)
Q Consensus 273 ~~---W~---~~~-~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 326 (400)
+. +. ... .......--++++ -+|.||+..-. ...|.+|||+.+.-..+
T Consensus 209 ~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~------~g~V~~~~p~G~~l~~i 264 (319)
T d2dg1a1 209 DGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG------QGRVLVFNKRGYPIGQI 264 (319)
T ss_dssp TSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET------TTEEEEECTTSCEEEEE
T ss_pred CCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcC------CCEEEEECCCCcEEEEE
Confidence 32 11 111 1111111223443 37889998532 46899999976554444
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.18 E-value=0.76 Score=38.84 Aligned_cols=189 Identities=13% Similarity=0.016 Sum_probs=85.8
Q ss_pred EEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCCcc
Q psy2979 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDF 189 (400)
Q Consensus 111 ~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r 189 (400)
..++.|+.+ ..+..+|...++.......... .-.+.... ++..++.......+..+|..+.............
T Consensus 134 ~~l~s~~~d-----g~v~i~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 207 (388)
T d1erja_ 134 KFLATGAED-----RLIRIWDIENRKIVMILQGHEQ-DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGV 207 (388)
T ss_dssp SEEEEEETT-----SCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCE
T ss_pred Ccceecccc-----cccccccccccccccccccccc-cccccccccccccccccccceeeeeeecccccccccccccccc
Confidence 345556654 3577788777665433211111 11122222 2221333245566777887765433322222111
Q ss_pred eeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCC-C---cccc--cEEEE-eCCEEEEEcCccccCCCCc
Q psy2979 190 DVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMK-L---AVTS--PAVVA-HEGMLYVTGGAILEDGDGI 262 (400)
Q Consensus 190 ~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~-~---~~~~--~~~~~-~~~~iyv~GG~~~~~~~~~ 262 (400)
........++.+++.|+.++ .+..||..+......-..+ . .... .+++. -++..++.|+. ++
T Consensus 208 ~~~~~~~~~~~~l~~~~~d~-----~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~---d~--- 276 (388)
T d1erja_ 208 TTVAVSPGDGKYIAAGSLDR-----AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL---DR--- 276 (388)
T ss_dssp EEEEECSTTCCEEEEEETTS-----CEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET---TS---
T ss_pred ccccccCCCCCeEEEEcCCC-----eEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEEC---CC---
Confidence 11111112556777777553 4788888877654332111 1 1111 11222 25666677776 43
Q ss_pred ceEEEEeCCCCceeeccCCCC-----------CceeeeEEE-ECCeEEEEcCcCCCCCCCCeEEEEECCCCeE
Q psy2979 263 EQVQRYNPKVNQWQDLAPMLI-----------PRSGAAICA-LDSCIYVLGGWHASTENTNRVECYHIAENTW 323 (400)
Q Consensus 263 ~~v~~yd~~~~~W~~~~~~~~-----------~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 323 (400)
.+..||..+.........+. ...-.+++. -++.+++.|+. ...+..||..+++-
T Consensus 277 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~------dg~i~vwd~~~~~~ 342 (388)
T d1erja_ 277 -SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK------DRGVLFWDKKSGNP 342 (388)
T ss_dssp -EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET------TSEEEEEETTTCCE
T ss_pred -cEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeC------CCEEEEEECCCCcE
Confidence 67888876544322111110 001111111 25667777765 45799999887764
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=95.09 E-value=0.28 Score=44.95 Aligned_cols=119 Identities=15% Similarity=0.295 Sum_probs=76.9
Q ss_pred EEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCc--eeeccCCC--------CCceeeeEEEECCeEEEEcCcCCCCCC
Q psy2979 240 AVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ--WQDLAPML--------IPRSGAAICALDSCIYVLGGWHASTEN 309 (400)
Q Consensus 240 ~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~--------~~r~~~~~~~~~~~iyv~GG~~~~~~~ 309 (400)
+-++.++.||+.... ..++++|.+|.+ |+.-+..+ ......+.+..+++||+...
T Consensus 61 tPiv~~g~vyv~t~~--------~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------- 125 (560)
T d1kv9a2 61 TPLFHDGVIYTSMSW--------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL------- 125 (560)
T ss_dssp CCEEETTEEEEEEGG--------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-------
T ss_pred CCEEECCEEEEECCC--------CeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeC-------
Confidence 446889999987654 478888988775 87543222 11223456667888888764
Q ss_pred CCeEEEEECCCCe--EEEccCCc-Cc-cCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCc--EEEe
Q psy2979 310 TNRVECYHIAENT--WEYKSPMK-EK-RYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS--WEIM 374 (400)
Q Consensus 310 ~~~v~~yd~~~~~--W~~~~~~~-~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~ 374 (400)
...++++|..+++ |+....-+ .. .....-.+.++.+++-+.. ........|..||.+|++ |+--
T Consensus 126 ~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~-~~~~~~G~v~a~D~~TG~~~W~~~ 195 (560)
T d1kv9a2 126 DGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGG-AEYGVRGFVSAYDADTGKLAWRFY 195 (560)
T ss_dssp TSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBC-TTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccc-eeccccceEEEEECCCceEEeeee
Confidence 4579999988874 77643322 22 2233455678888775433 333445689999999985 7754
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.06 E-value=0.66 Score=37.45 Aligned_cols=63 Identities=8% Similarity=0.177 Sum_probs=34.2
Q ss_pred CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 294 DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 294 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
.+.+++.|+. ...+..||..+++.... +......-..+.. ++++++.|+. + ..|.+||..+.+
T Consensus 216 ~~~~~~~~~~------d~~i~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~~~-d-----g~i~iwd~~~~~ 280 (317)
T d1vyhc1 216 PGPFLLSGSR------DKTIKMWDVSTGMCLMT--LVGHDNWVRGVLFHSGGKFILSCAD-D-----KTLRVWDYKNKR 280 (317)
T ss_dssp -CCEEEEEET------TSEEEEEETTTTEEEEE--EECCSSCEEEEEECSSSSCEEEEET-T-----TEEEEECCTTSC
T ss_pred CCceeEeccC------CCEEEEEECCCCcEEEE--EeCCCCCEEEEEECCCCCEEEEEEC-C-----CeEEEEECCCCc
Confidence 4455555554 45788899888764321 1111111112222 5666777765 2 468889987653
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=95.04 E-value=0.66 Score=37.68 Aligned_cols=145 Identities=17% Similarity=0.163 Sum_probs=75.7
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCcee
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQ 276 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~ 276 (400)
++++++.|+.+ ..+..||..+++...+..+.....-.+++. -+++.++.|+. ++ .+..||..+....
T Consensus 147 ~~~~l~~g~~d-----g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~----~i~~~~~~~~~~~ 214 (299)
T d1nr0a2 147 DKQFVAVGGQD-----SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ---SR----KVIPYSVANNFEL 214 (299)
T ss_dssp TSCEEEEEETT-----SEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET---TS----CEEEEEGGGTTEE
T ss_pred ccccccccccc-----cccccccccccccccccccccccccccccccccccccccccc---cc----ccccccccccccc
Confidence 56677777755 458888988776655432221111112222 25566666766 43 6899998776544
Q ss_pred ec-cCCCCCceeeeEEE--ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCC-cCccCc-ceEEEECCEEEEEcCc
Q psy2979 277 DL-APMLIPRSGAAICA--LDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPM-KEKRYR-PGIAVIDGKIYVLGGE 351 (400)
Q Consensus 277 ~~-~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~-~~~~~~-~~~~~~~~~lyv~GG~ 351 (400)
.. ..+.........+. .++.+++.|+. ...+..||..+.....+... ...... ..++..++..++.||.
T Consensus 215 ~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~ 288 (299)
T d1nr0a2 215 AHTNSWTFHTAKVACVSWSPDNVRLATGSL------DNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQ 288 (299)
T ss_dssp SCCCCCCCCSSCEEEEEECTTSSEEEEEET------TSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEET
T ss_pred cccccccccccccccccccccccceEEEcC------CCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeC
Confidence 32 23322122222222 26777788876 45788899876543221111 111111 1222335555666766
Q ss_pred cCCCCCCCeEEEEEC
Q psy2979 352 EGWDGYHDSIECYDV 366 (400)
Q Consensus 352 ~~~~~~~~~v~~yd~ 366 (400)
+ ..|.+||.
T Consensus 289 -D-----~~i~iWdl 297 (299)
T d1nr0a2 289 -D-----SNIKFWNV 297 (299)
T ss_dssp -T-----SCEEEEEC
T ss_pred -C-----CEEEEEec
Confidence 3 34666664
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=95.03 E-value=0.4 Score=40.06 Aligned_cols=154 Identities=9% Similarity=-0.096 Sum_probs=83.5
Q ss_pred EEEeecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccE
Q psy2979 161 YCLDIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPA 240 (400)
Q Consensus 161 yv~~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~ 240 (400)
+++....+++.+|...+...+++. ..+.......-+++..+++|.... ..+..||..+++-..+..-+.... ..
T Consensus 18 ~a~~~~g~v~v~d~~~~~~~~~~~--~~~v~~~~~spDg~~l~~~~~~~g---~~v~v~d~~~~~~~~~~~~~~~v~-~~ 91 (360)
T d1k32a3 18 IAFVSRGQAFIQDVSGTYVLKVPE--PLRIRYVRRGGDTKVAFIHGTREG---DFLGIYDYRTGKAEKFEENLGNVF-AM 91 (360)
T ss_dssp EEEEETTEEEEECTTSSBEEECSC--CSCEEEEEECSSSEEEEEEEETTE---EEEEEEETTTCCEEECCCCCCSEE-EE
T ss_pred EEEEECCeEEEEECCCCcEEEccC--CCCEEEEEECCCCCEEEEEEcCCC---CEEEEEECCCCcEEEeeCCCceEE-ee
Confidence 333334567778888887777643 223222222236766555543321 358899999988776644332221 11
Q ss_pred EEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCC----CCCCCeEEEE
Q psy2979 241 VVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHAS----TENTNRVECY 316 (400)
Q Consensus 241 ~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~~v~~y 316 (400)
+..-+++..++++. + ..++.++..+.+...............+..-+++.+++++.... ......+..+
T Consensus 92 ~~spdg~~l~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~ 164 (360)
T d1k32a3 92 GVDRNGKFAVVAND---R----FEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVY 164 (360)
T ss_dssp EECTTSSEEEEEET---T----SEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEE
T ss_pred eecccccccceecc---c----cccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeee
Confidence 22236666666665 2 47888999887765554333332222333346666665442221 1114568889
Q ss_pred ECCCCeEEEcc
Q psy2979 317 HIAENTWEYKS 327 (400)
Q Consensus 317 d~~~~~W~~~~ 327 (400)
|..+++=..+.
T Consensus 165 d~~~~~~~~~~ 175 (360)
T d1k32a3 165 DMEGRKIFAAT 175 (360)
T ss_dssp ETTTTEEEECS
T ss_pred ccccCceeeec
Confidence 99887654443
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.99 E-value=0.74 Score=37.67 Aligned_cols=181 Identities=12% Similarity=0.053 Sum_probs=93.4
Q ss_pred eecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE
Q psy2979 164 DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA 243 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~ 243 (400)
.....+..+|+...+-.. .+............++..++.|+.++ .+..||..+.+-.....-.. ..-.+..
T Consensus 154 ~~d~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~dg-----~i~~~d~~~~~~~~~~~~~~--~~v~~~~ 224 (342)
T d2ovrb2 154 AYDFMVKVWDPETETCLH--TLQGHTNRVYSLQFDGIHVVSGSLDT-----SIRVWDVETGNCIHTLTGHQ--SLTSGME 224 (342)
T ss_dssp ETTSCEEEEEGGGTEEEE--EECCCSSCEEEEEECSSEEEEEETTS-----CEEEEETTTCCEEEEECCCC--SCEEEEE
T ss_pred cCCCeEEEeecccceeeE--EEcCcccccccccCCCCEEEEEeCCC-----eEEEeecccceeeeEecccc--cceeEEe
Confidence 334456666665443221 11111112223334666667777653 48888988776433222111 1122334
Q ss_pred eCCEEEEEcCccccCCCCcceEEEEeCCCCceee-ccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCe
Q psy2979 244 HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQD-LAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENT 322 (400)
Q Consensus 244 ~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 322 (400)
.++.+++.|+. ++ .+..||....+-.. +...............++.+++.|+. ...+..||..+++
T Consensus 225 ~~~~~l~s~s~---d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~------Dg~i~iwd~~tg~ 291 (342)
T d2ovrb2 225 LKDNILVSGNA---DS----TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSD------DGTVKLWDLKTGE 291 (342)
T ss_dssp EETTEEEEEET---TS----CEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEET------TSEEEEEETTTCC
T ss_pred cCCCEEEEEcC---CC----EEEEEecccccccccccccceeeeceeecccCCCeeEEEcC------CCEEEEEECCCCC
Confidence 45566677776 44 68899987765433 22222223333444557777788776 4589999998886
Q ss_pred EE-EccCCcCccC--cceEEEE--CCEEEEEcCccCCCCCCCeEEEEECCC
Q psy2979 323 WE-YKSPMKEKRY--RPGIAVI--DGKIYVLGGEEGWDGYHDSIECYDVDN 368 (400)
Q Consensus 323 W~-~~~~~~~~~~--~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~ 368 (400)
.. .+...+.+.. .-..+.. ++.+++.|+. ++ .....++++|...
T Consensus 292 ~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~-dG-t~~~~l~~~Df~~ 340 (342)
T d2ovrb2 292 FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSR-NG-TEETKLLVLDFDV 340 (342)
T ss_dssp EEEEEEECTTGGGTCEEEEEEECSSEEEEEEECS-SS-SSCCEEEEEECCC
T ss_pred EEEEEecccCCCCCCCEEEEEECCCCCEEEEEeC-CC-CCeeEEEEEeCCC
Confidence 53 2322222111 1112222 4556666765 32 2234577777654
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=94.89 E-value=0.49 Score=43.38 Aligned_cols=117 Identities=17% Similarity=0.314 Sum_probs=74.7
Q ss_pred EEeCCEEEEEcCccccCCCCcceEEEEeCCCCc--eeeccCCCC--------CceeeeEEEECCeEEEEcCcCCCCCCCC
Q psy2979 242 VAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ--WQDLAPMLI--------PRSGAAICALDSCIYVLGGWHASTENTN 311 (400)
Q Consensus 242 ~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~--------~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 311 (400)
++.+|.||+.... +.++++|..+.+ |+.-+..+. .....+.+..++++|+... ..
T Consensus 74 iv~~g~vyv~t~~--------~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~-------~g 138 (573)
T d1kb0a2 74 VVVDGIMYVSASW--------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-------DG 138 (573)
T ss_dssp EEETTEEEEECGG--------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-------TS
T ss_pred EEECCEEEEECCC--------CeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEec-------cc
Confidence 5679999987654 368888888765 875433221 1123356677888887653 45
Q ss_pred eEEEEECCCCe--EEEcc-CCcCcc--CcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCc--EEEe
Q psy2979 312 RVECYHIAENT--WEYKS-PMKEKR--YRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS--WEIM 374 (400)
Q Consensus 312 ~v~~yd~~~~~--W~~~~-~~~~~~--~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~ 374 (400)
.++++|..+++ |+.-. ..+... ....-.+.++++++-+.. ........|..||..|++ |+--
T Consensus 139 ~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~-~~~~~~G~v~a~D~~TG~~~W~~~ 207 (573)
T d1kb0a2 139 RLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGG-AEYGVRGYITAYDAETGERKWRWF 207 (573)
T ss_dssp EEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBC-TTTCCBCEEEEEETTTCCEEEEEE
T ss_pred ceeeeccccccceecccCccCCcceEEeecceEEEeccEEEeecc-ccccccceEEEEecCCccceeeee
Confidence 79999988875 87643 222221 233346678888774322 233345689999999985 8764
|
| >d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Hemopexin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=94.73 E-value=0.64 Score=35.70 Aligned_cols=134 Identities=15% Similarity=0.129 Sum_probs=75.1
Q ss_pred ECCEEEEEcccCCCCCCCeEEEEeCC-----CCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCC
Q psy2979 197 LDGFVYAVGGWDGSCRLDSVERYDPT-----KNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPK 271 (400)
Q Consensus 197 ~~~~iyv~GG~~~~~~~~~v~~yd~~-----~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~ 271 (400)
.++.+|++=|. .+++.++. ++.| +.||... ..+...-++++|++-|. .+++|+..
T Consensus 17 ~~G~~y~Fkg~-------~~wr~~~~~p~~Is~~W---pglp~~I-DAaf~~~~~~~yfFkG~---------~yw~y~~~ 76 (192)
T d1qhua1 17 DNGTMLFFKDE-------FVWKSHRGIRELISERW---KNFIGPV-DAAFRHGHTSVYLIKGD---------KVWVYTSE 76 (192)
T ss_dssp TTSCEEEEETT-------EEEETTTTEEEEHHHHS---TTCCSCC-SEEEEETTTEEEEEETT---------EEEEECC-
T ss_pred CCCcEEEEeCC-------EEEEcCCCCeeEHhhhc---CCCCCCc-cEEEEcCCCcEEEEeCC---------EEEEEeCC
Confidence 37799998662 23433221 1234 3455433 22222346899999887 68999754
Q ss_pred CCcee---ecc----CCCCCceeeeEEE------ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCc-CccCcce
Q psy2979 272 VNQWQ---DLA----PMLIPRSGAAICA------LDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMK-EKRYRPG 337 (400)
Q Consensus 272 ~~~W~---~~~----~~~~~r~~~~~~~------~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~~~~~~ 337 (400)
+.... .+. .+| ..--++.. -++++|++-|. ..++||..++.=..- ..+ .+. .-+
T Consensus 77 ~~~~gyPk~i~~~~~glp--~~iDAA~~~~~~~~~~~~~yfFkg~--------~yw~yd~~~~~~~~~-~w~gip~-~da 144 (192)
T d1qhua1 77 KNEKVYPKSLQDEFPGIP--FPLDAAVECHRGECQDEGILFFQGN--------RKWFWDLTTGTKKER-SWPAVGN-CTS 144 (192)
T ss_dssp ------CEEHHHHSTTCC--SSCCEEEEECBBTBSSSEEEEEETT--------EEEEEETTTTEEEEE-CCTTSCC-CSE
T ss_pred ccccCCCcChHHhCCCCC--CCceEEEEccccccCCCeEEEEeCC--------eEEEEeCCCCCcccc-cccCcCC-cce
Confidence 43321 111 222 11122222 27899999864 789999888742211 111 122 234
Q ss_pred EEEECCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 338 IAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 338 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
+...+|++|++-|. ..++||..+.+
T Consensus 145 A~~~~g~~YfFkg~--------~y~r~~~~~~~ 169 (192)
T d1qhua1 145 ALRWLGRYYCFQGN--------QFLRFNPVSGE 169 (192)
T ss_dssp EEEETTEEEEEETT--------EEEEECTTTCC
T ss_pred eEEeCCcEEEEECC--------EEEEEcCCcce
Confidence 45569999999886 67999987754
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.46 E-value=1.1 Score=37.23 Aligned_cols=147 Identities=13% Similarity=0.120 Sum_probs=77.4
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEE--EeCCEEEEEcCccccCCCCcceEEEEeCCCCce
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVV--AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQW 275 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~--~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W 275 (400)
++..++.|+.+ ..+..||....+......+.......... .-++.+++.++. + ..+..||..+.+-
T Consensus 108 dg~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---d----~~i~~~~~~~~~~ 175 (337)
T d1gxra_ 108 DGCTLIVGGEA-----STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS---D----GNIAVWDLHNQTL 175 (337)
T ss_dssp TSSEEEEEESS-----SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET---T----SCEEEEETTTTEE
T ss_pred CCCEEEEeecc-----ccccccccccccccccccccccccccccccccccccccccccc---c----ccccccccccccc
Confidence 56666777765 46888998877665444333222221222 225666666665 3 3688888877653
Q ss_pred eeccCCCCCceeeeEE-EECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCcc
Q psy2979 276 QDLAPMLIPRSGAAIC-ALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEE 352 (400)
Q Consensus 276 ~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~ 352 (400)
.......... ..+++ ..++..++.|+. ...+..||..+++-...-..+.. ...+.+ +++..++|+.
T Consensus 176 ~~~~~~~~~~-v~~l~~s~~~~~~~~~~~------d~~v~i~d~~~~~~~~~~~~~~~---i~~l~~~~~~~~l~~~~~- 244 (337)
T d1gxra_ 176 VRQFQGHTDG-ASCIDISNDGTKLWTGGL------DNTVRSWDLREGRQLQQHDFTSQ---IFSLGYCPTGEWLAVGME- 244 (337)
T ss_dssp EEEECCCSSC-EEEEEECTTSSEEEEEET------TSEEEEEETTTTEEEEEEECSSC---EEEEEECTTSSEEEEEET-
T ss_pred cccccccccc-cccccccccccccccccc------cccccccccccceeecccccccc---eEEEEEcccccccceecc-
Confidence 3322211111 11222 235666777765 46788999887753222111111 112222 5566666665
Q ss_pred CCCCCCCeEEEEECCCCcEE
Q psy2979 353 GWDGYHDSIECYDVDNDSWE 372 (400)
Q Consensus 353 ~~~~~~~~v~~yd~~~~~W~ 372 (400)
+ ..+.+||..+..-.
T Consensus 245 d-----~~i~i~d~~~~~~~ 259 (337)
T d1gxra_ 245 S-----SNVEVLHVNKPDKY 259 (337)
T ss_dssp T-----SCEEEEETTSSCEE
T ss_pred c-----cccccccccccccc
Confidence 2 45788888776543
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.35 E-value=1.1 Score=36.63 Aligned_cols=178 Identities=11% Similarity=0.095 Sum_probs=95.4
Q ss_pred eecCEEEEEECCCCCeEEccCCCCcceeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEE
Q psy2979 164 DIVDIVYVAASMHKILHSLGSLKFDFDVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVA 243 (400)
Q Consensus 164 ~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~ 243 (400)
.....+..++..+++....-.... .............+.|+.+ ..+..+|+...+-.. .+...........
T Consensus 114 ~~d~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d-----~~i~~~d~~~~~~~~--~~~~~~~~~~~~~ 184 (342)
T d2ovrb2 114 SRDATLRVWDIETGQCLHVLMGHV--AAVRCVQYDGRRVVSGAYD-----FMVKVWDPETETCLH--TLQGHTNRVYSLQ 184 (342)
T ss_dssp ETTSEEEEEESSSCCEEEEEECCS--SCEEEEEECSSCEEEEETT-----SCEEEEEGGGTEEEE--EECCCSSCEEEEE
T ss_pred ccceeEEEeecccccceeeeeccc--ccceeeccccceeeeecCC-----CeEEEeecccceeeE--EEcCccccccccc
Confidence 334456667766665443222111 1122223344455555544 346677776554322 1221122233445
Q ss_pred eCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeE
Q psy2979 244 HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTW 323 (400)
Q Consensus 244 ~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 323 (400)
.++..++.|+. ++ .+..||..+.+-..... ...........++.+++.|+. ...+..||..+.+-
T Consensus 185 ~~~~~l~s~~~---dg----~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~~~~l~s~s~------d~~i~iwd~~~~~~ 249 (342)
T d2ovrb2 185 FDGIHVVSGSL---DT----SIRVWDVETGNCIHTLT--GHQSLTSGMELKDNILVSGNA------DSTVKIWDIKTGQC 249 (342)
T ss_dssp ECSSEEEEEET---TS----CEEEEETTTCCEEEEEC--CCCSCEEEEEEETTEEEEEET------TSCEEEEETTTCCE
T ss_pred CCCCEEEEEeC---CC----eEEEeecccceeeeEec--ccccceeEEecCCCEEEEEcC------CCEEEEEecccccc
Confidence 57777778877 54 68889987665332211 111112233445566677765 45788999877654
Q ss_pred EE-ccCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCcE
Q psy2979 324 EY-KSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDSW 371 (400)
Q Consensus 324 ~~-~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W 371 (400)
.. +...........+...++.+++.|+. + ..|.+||+++++.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~s~s~-D-----g~i~iwd~~tg~~ 292 (342)
T d2ovrb2 250 LQTLQGPNKHQSAVTCLQFNKNFVITSSD-D-----GTVKLWDLKTGEF 292 (342)
T ss_dssp EEEECSTTSCSSCEEEEEECSSEEEEEET-T-----SEEEEEETTTCCE
T ss_pred cccccccceeeeceeecccCCCeeEEEcC-C-----CEEEEEECCCCCE
Confidence 33 32222233333445567777788876 3 4689999988764
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.21 E-value=1.2 Score=36.59 Aligned_cols=227 Identities=12% Similarity=0.066 Sum_probs=110.5
Q ss_pred EEEEEeccCCCcccceEEEEEcCCCceEEccCCc-ccceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCCCCc-
Q psy2979 111 VIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLP-FAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFD- 188 (400)
Q Consensus 111 ~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~-~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~- 188 (400)
-.++.|+.+ ..+.+||..+++-... +. ....-.+++..++..++.......+..++....+..........
T Consensus 24 ~~l~tgs~D-----g~i~vWd~~~~~~~~~--l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~ 96 (355)
T d1nexb2 24 NYVITGADD-----KMIRVYDSINKKFLLQ--LSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNST 96 (355)
T ss_dssp TEEEEEETT-----TEEEEEETTTTEEEEE--EECCSSCEEEEEEETTTEEEEEETTCCEEEEETTTTEEEEEECCCSSC
T ss_pred CEEEEEeCC-----CeEEEEECCCCcEEEE--EECCCCCEEEEEEcCCCEEEEEeccccccccccccccccccccccccc
Confidence 345666655 4788899887663321 11 11111234444444133334445677777776654333222211
Q ss_pred ceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEcc----------CCCCcc-----------cccEEEEeCC
Q psy2979 189 FDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIE----------PMKLAV-----------TSPAVVAHEG 246 (400)
Q Consensus 189 r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~----------~l~~~~-----------~~~~~~~~~~ 246 (400)
......... ++..++.|+.+ ..+..||..+..-.... ..+... ........++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (355)
T d1nexb2 97 VRCLDIVEYKNIKYIVTGSRD-----NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHG 171 (355)
T ss_dssp EEEEEEEEETTEEEEEEEETT-----SEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEET
T ss_pred ccccccccccccceeeeecCC-----CcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccccccccc
Confidence 111222222 44555556544 34666676554321100 000000 0011122344
Q ss_pred EEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEc
Q psy2979 247 MLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYK 326 (400)
Q Consensus 247 ~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 326 (400)
.+.+.|+. + ..+..||..+.+...................++..++.|+. ...+..||..++.....
T Consensus 172 ~~~~~~~~---d----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~ 238 (355)
T d1nexb2 172 NIVVSGSY---D----NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM------DTTIRIWDLENGELMYT 238 (355)
T ss_dssp TEEEEEET---T----SCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEET------TSCEEEEETTTCCEEEE
T ss_pred ceeeeecc---c----ceeeeeecccccceeeeeccccccccccccccceeeecccc------cceEEeeeccccccccc
Confidence 55555555 3 36888888776654433323333333333346666666665 45688899887764332
Q ss_pred cCCcCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCc
Q psy2979 327 SPMKEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 370 (400)
- ........++..+++.++.|+. + ..|..||..+..
T Consensus 239 ~--~~h~~~v~~~~~~~~~l~~~~~-d-----g~i~iwd~~~~~ 274 (355)
T d1nexb2 239 L--QGHTALVGLLRLSDKFLVSAAA-D-----GSIRGWDANDYS 274 (355)
T ss_dssp E--CCCSSCCCEEEECSSEEEEECT-T-----SEEEEEETTTCC
T ss_pred c--ccccccccccccccceeeeeec-c-----cccccccccccc
Confidence 2 1111223455667777777876 3 367888887764
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.10 E-value=1.2 Score=36.43 Aligned_cols=146 Identities=11% Similarity=0.170 Sum_probs=79.4
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceee
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQD 277 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~ 277 (400)
++.+.+.|+.+ ..+..||..+.+......-............++...+.|+. ++ .+..||..+.....
T Consensus 170 ~~~~~~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~----~i~i~d~~~~~~~~ 237 (355)
T d1nexb2 170 HGNIVVSGSYD-----NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM---DT----TIRIWDLENGELMY 237 (355)
T ss_dssp ETTEEEEEETT-----SCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEET---TS----CEEEEETTTCCEEE
T ss_pred ccceeeeeccc-----ceeeeeecccccceeeeeccccccccccccccceeeecccc---cc----eEEeeecccccccc
Confidence 34445555443 35778888877654433322222222223345566666666 43 58888887665332
Q ss_pred ccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCCCCC
Q psy2979 278 LAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGWDGY 357 (400)
Q Consensus 278 ~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~ 357 (400)
. +........++..++..++.|+. ...+..||..+..-..... ........+...++++++.|..
T Consensus 238 ~--~~~h~~~v~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~g~d------ 302 (355)
T d1nexb2 238 T--LQGHTALVGLLRLSDKFLVSAAA------DGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGSE------ 302 (355)
T ss_dssp E--ECCCSSCCCEEEECSSEEEEECT------TSEEEEEETTTCCEEEEEE-CTTCCCCCEEEECSSEEEEEET------
T ss_pred c--cccccccccccccccceeeeeec------ccccccccccccceecccc-cCCceEEEEEcCCCCEEEEEeC------
Confidence 2 11111222345557777777876 4578889987765332211 1122222344457776665532
Q ss_pred CCeEEEEECCCCcE
Q psy2979 358 HDSIECYDVDNDSW 371 (400)
Q Consensus 358 ~~~v~~yd~~~~~W 371 (400)
+.|.+||.++++.
T Consensus 303 -~~i~vwd~~tg~~ 315 (355)
T d1nexb2 303 -NQFNIYNLRSGKL 315 (355)
T ss_dssp -TEEEEEETTTCCB
T ss_pred -CEEEEEECCCCCE
Confidence 4689999988753
|
| >d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Gelatinase A (MMP-2), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.06 E-value=0.94 Score=34.93 Aligned_cols=144 Identities=12% Similarity=0.105 Sum_probs=77.8
Q ss_pred eeEEEECCeEEEEEeecCEEEEEECCCCCeE---Ec----cCCCCcceeeeEEE--ECCEEEEEcccCCCCCCCeEEEEe
Q psy2979 150 HGLVVSGRNTIYCLDIVDIVYVAASMHKILH---SL----GSLKFDFDVSGIAM--LDGFVYAVGGWDGSCRLDSVERYD 220 (400)
Q Consensus 150 ~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~---~~----~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd 220 (400)
-+++.+++. +|++. .+.+|.++....... .+ +.+|..- . ++.. .++++|++-| +..++|+
T Consensus 16 DAv~~~~G~-~y~Fk-g~~~wr~~~~~~~~~~P~~I~~~w~glp~~I-d-AA~~~~~~~~~yffkg-------~~~~~y~ 84 (200)
T d1gena_ 16 DGIAQIRGE-IFFFK-DRFIWRTVTPRDKPMGPLLVATFWPELPEKI-D-AVYEAPQEEKAVFFAG-------NEYWIYS 84 (200)
T ss_dssp SEEEEETTE-EEEEE-TTEEEEESSTTSCCEEEEEGGGTCTTSCSCC-S-EEEEETTTTEEEEEET-------TEEEEEE
T ss_pred eEEEecCCe-EEEEe-CCEEEEEcCCCCCCCCcEehhhccCCCCCCc-e-EEEEECCCCeEEEecC-------ceEEEEc
Confidence 367777888 99883 344555543322211 11 1222211 1 2222 2678999877 5678887
Q ss_pred CCCCce---EEccC--CCCcccccEEE-E--eCCEEEEEcCccccCCCCcceEEEEeCCCCceee-----cc----CCCC
Q psy2979 221 PTKNEW---SYIEP--MKLAVTSPAVV-A--HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQD-----LA----PMLI 283 (400)
Q Consensus 221 ~~~~~W---~~~~~--l~~~~~~~~~~-~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~-----~~----~~~~ 283 (400)
-.+-.. ..+.. +|.....--+| . -++++|++-|. ..++||..+++-.. +. .+|
T Consensus 85 ~~~~~~gyPk~i~~~g~p~~~~~iDAA~~~~~~g~~YfFkg~---------~y~ryd~~~~~vd~~yPk~I~~~w~gvp- 154 (200)
T d1gena_ 85 ASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGD---------KFWRYNEVKKKMDPGFPKLIADAWNAIP- 154 (200)
T ss_dssp TTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEETT---------EEEEEETTTTEECSSCCEEHHHHSSSCC-
T ss_pred CcccccCCCceehhcCCCCCccceeeEEEECCCCeEEEEeCc---------EEEEeccccceeccCcceehhhccCCCC-
Confidence 432111 11111 23222222233 3 36899999887 79999998765221 11 233
Q ss_pred CceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeE
Q psy2979 284 PRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTW 323 (400)
Q Consensus 284 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 323 (400)
..--++... ++++|++-|. ..++||..+.+.
T Consensus 155 -~~idAAf~~~~~g~~Yff~g~--------~y~r~d~~~~~~ 187 (200)
T d1gena_ 155 -DNLDAVVDLQGGGHSYFFKGA--------YYLKLENQSLKS 187 (200)
T ss_dssp -SSCSEEEECTTTCEEEEEETT--------EEEEEETTEEEE
T ss_pred -CCccEEEEecCCCEEEEEECC--------EEEEEECCceEE
Confidence 222344443 6899999864 789998766543
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.89 E-value=0.45 Score=38.55 Aligned_cols=146 Identities=10% Similarity=0.060 Sum_probs=69.9
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccc-cEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCce
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTS-PAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQW 275 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W 275 (400)
++.+++.||.+ ..+..||..+++.... +...... .+++. -++.+.+.++. + ..+..++......
T Consensus 28 ~~~~l~s~s~D-----g~i~iWd~~~~~~~~~--~~~h~~~V~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~ 93 (317)
T d1vyhc1 28 VFSVMVSASED-----ATIKVWDYETGDFERT--LKGHTDSVQDISFDHSGKLLASCSA---D----MTIKLWDFQGFEC 93 (317)
T ss_dssp SSSEEEEEESS-----SCEEEEETTTCCCCEE--ECCCSSCEEEEEECTTSSEEEEEET---T----SCCCEEETTSSCE
T ss_pred CCCEEEEEeCC-----CeEEEEECCCCCEEEE--EeCCCCcEEEEeeeccccccccccc---c----ccccccccccccc
Confidence 45667777765 3588889887754321 1111111 11222 24455555544 2 2345555555544
Q ss_pred eeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCccC
Q psy2979 276 QDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGEEG 353 (400)
Q Consensus 276 ~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~ 353 (400)
..................++..++.++. ...+..||..+++....-. ........+.. ++++++.|+. +
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~-d 164 (317)
T d1vyhc1 94 IRTMHGHDHNVSSVSIMPNGDHIVSASR------DKTIKMWEVQTGYCVKTFT--GHREWVRMVRPNQDGTLIASCSN-D 164 (317)
T ss_dssp EECCCCCSSCEEEEEECSSSSEEEEEET------TSEEEEEETTTCCEEEEEE--CCSSCEEEEEECTTSSEEEEEET-T
T ss_pred ccccccccccceeeeccCCCceEEeecc------CcceeEeecccceeeeEEc--cCCCcceeeecccCCCEEEEEeC-C
Confidence 4332222222222222225555555554 4578888888776543221 11112222333 5666666665 2
Q ss_pred CCCCCCeEEEEECCCCcE
Q psy2979 354 WDGYHDSIECYDVDNDSW 371 (400)
Q Consensus 354 ~~~~~~~v~~yd~~~~~W 371 (400)
..+..||..+.+.
T Consensus 165 -----~~v~~~~~~~~~~ 177 (317)
T d1vyhc1 165 -----QTVRVWVVATKEC 177 (317)
T ss_dssp -----SCEEEEETTTCCE
T ss_pred -----CeEEEEeecccee
Confidence 3466677666543
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=93.85 E-value=1.9 Score=37.58 Aligned_cols=193 Identities=11% Similarity=-0.029 Sum_probs=106.4
Q ss_pred CcEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEeecCEEEEEECCCCCeEEccCCCC
Q psy2979 109 INVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLDIVDIVYVAASMHKILHSLGSLKF 187 (400)
Q Consensus 109 ~~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~ 187 (400)
.+.++|.-. ...++.++|..+++-.. .++....-|+++.. +++.+|+......+..+|..+.+-.....++.
T Consensus 31 ~~~~~v~~~-----d~g~v~v~D~~t~~v~~--~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~ 103 (432)
T d1qksa2 31 ENLFSVTLR-----DAGQIALIDGSTYEIKT--VLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI 103 (432)
T ss_dssp GGEEEEEET-----TTTEEEEEETTTCCEEE--EEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC
T ss_pred CcEEEEEEc-----CCCEEEEEECCCCcEEE--EEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEec
Confidence 356555432 33578999999887543 23334445666665 45546666656788999988776544443333
Q ss_pred cceeeeEEEE-----CC-EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCC-----------CcccccEEEEeCC-EEE
Q psy2979 188 DFDVSGIAML-----DG-FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMK-----------LAVTSPAVVAHEG-MLY 249 (400)
Q Consensus 188 ~r~~~~~~~~-----~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~-----------~~~~~~~~~~~~~-~iy 249 (400)
.......+.. ++ .+|+.+..+ ..+..||..+++-....+.. .++....+...++ .++
T Consensus 104 ~~~~~~~~~s~~~SpDG~~l~vs~~~~-----~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~ 178 (432)
T d1qksa2 104 GSEARSIETSKMEGWEDKYAIAGAYWP-----PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI 178 (432)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEET-----TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEE
T ss_pred CCCCCCeEEecccCCCCCEEEEEcCCC-----CeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEE
Confidence 2222222221 34 677766543 46888999888765442211 1121111222333 444
Q ss_pred EEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEE-CCe-EEEEcCcCCCCCCCCeEEEEECCCCeEEEc
Q psy2979 250 VTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICAL-DSC-IYVLGGWHASTENTNRVECYHIAENTWEYK 326 (400)
Q Consensus 250 v~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 326 (400)
+.... ...+..+|..+.+-..+..++....-+.++.. +++ +|+.... .+.+...|..+.+....
T Consensus 179 vs~~~-------~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~------~~~v~v~d~~~~~~~~~ 244 (432)
T d1qksa2 179 VNVKE-------TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANA------RNKLVVIDTKEGKLVAI 244 (432)
T ss_dssp EEETT-------TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGG------GTEEEEEETTTTEEEEE
T ss_pred EEEcc-------CCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccc------cceEEEeecccceEEEE
Confidence 44433 34788888776554444444444444445444 444 4444433 56788888888775543
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.81 E-value=1.6 Score=36.67 Aligned_cols=149 Identities=17% Similarity=0.130 Sum_probs=74.8
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceee
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQD 277 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~ 277 (400)
+++.++.|+.++ .+..||..+++......-............++...+.|+. + ..+..+|..+..-..
T Consensus 132 ~~~~l~s~~~dg-----~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~---~----~~i~~~d~~~~~~~~ 199 (388)
T d1erja_ 132 DGKFLATGAEDR-----LIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG---D----RTVRIWDLRTGQCSL 199 (388)
T ss_dssp TSSEEEEEETTS-----CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET---T----SEEEEEETTTTEEEE
T ss_pred CCCcceeccccc-----cccccccccccccccccccccccccccccccccccccccc---c----eeeeeeecccccccc
Confidence 556677777653 4888898887665443221111111112234455555555 3 368888887765444
Q ss_pred ccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCc-C---cc-CcceEEEE--CCEEEEEcC
Q psy2979 278 LAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMK-E---KR-YRPGIAVI--DGKIYVLGG 350 (400)
Q Consensus 278 ~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~---~~-~~~~~~~~--~~~lyv~GG 350 (400)
................++.+++.|+. ...+..||..+......-..+ . .. ..-..+.+ +++.++.|+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~l~~~~~------d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~ 273 (388)
T d1erja_ 200 TLSIEDGVTTVAVSPGDGKYIAAGSL------DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 273 (388)
T ss_dssp EEECSSCEEEEEECSTTCCEEEEEET------TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred ccccccccccccccCCCCCeEEEEcC------CCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEE
Confidence 33222221111111125677777765 457888998877654332111 1 11 11112223 566666676
Q ss_pred ccCCCCCCCeEEEEECCCCc
Q psy2979 351 EEGWDGYHDSIECYDVDNDS 370 (400)
Q Consensus 351 ~~~~~~~~~~v~~yd~~~~~ 370 (400)
. + ..+..||..+..
T Consensus 274 ~-d-----~~i~iwd~~~~~ 287 (388)
T d1erja_ 274 L-D-----RSVKLWNLQNAN 287 (388)
T ss_dssp T-T-----SEEEEEEC----
T ss_pred C-C-----CcEEEEeccCCc
Confidence 5 2 467788876543
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=93.73 E-value=0.71 Score=42.24 Aligned_cols=119 Identities=11% Similarity=0.147 Sum_probs=72.4
Q ss_pred EEEeCCEEEEEcCccccCCCCcceEEEEeCC-CC--ceeeccCCCCCc--------eeeeEEEECCeEEEEcCcCCCCCC
Q psy2979 241 VVAHEGMLYVTGGAILEDGDGIEQVQRYNPK-VN--QWQDLAPMLIPR--------SGAAICALDSCIYVLGGWHASTEN 309 (400)
Q Consensus 241 ~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~-~~--~W~~~~~~~~~r--------~~~~~~~~~~~iyv~GG~~~~~~~ 309 (400)
=.+++|.+|+..+. + +.++..|.. |. .|+.-+..+... ..-+++..+++||+...
T Consensus 58 P~v~~g~vyv~t~~---~----~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~~~------- 123 (571)
T d2ad6a1 58 PLVIGDMMYVHSAF---P----NNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA------- 123 (571)
T ss_dssp CEEETTEEEEECST---T----TCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------
T ss_pred CEEECCEEEEecCC---C----CeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceeeCCeEEEEeC-------
Confidence 35679999998653 1 257777753 32 376543222111 11245677899887643
Q ss_pred CCeEEEEECCCCe--EEE-ccCC-cCccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCc--EEEe
Q psy2979 310 TNRVECYHIAENT--WEY-KSPM-KEKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS--WEIM 374 (400)
Q Consensus 310 ~~~v~~yd~~~~~--W~~-~~~~-~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~ 374 (400)
...+++.|.++++ |.. +... +.......-++.++++|+-+.. ........|..||..|++ |+.-
T Consensus 124 ~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~-~~~~~~G~v~a~D~~TG~~~W~~~ 193 (571)
T d2ad6a1 124 NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSG-AELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBC-GGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CCcEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeecc-ccccccCcEEEEECCCCcEEEEEe
Confidence 4579999999885 765 3221 1112223346779999886543 333345689999999875 7653
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=93.69 E-value=1 Score=37.40 Aligned_cols=145 Identities=8% Similarity=-0.087 Sum_probs=79.6
Q ss_pred eEEEEeCCCCceEEccCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEEEC
Q psy2979 215 SVERYDPTKNEWSYIEPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICALD 294 (400)
Q Consensus 215 ~v~~yd~~~~~W~~~~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 294 (400)
.++.||..+++..+++. ..+....+-.-+++..+++|. +. -..+..||..+..-..+..-.... ......-+
T Consensus 25 ~v~v~d~~~~~~~~~~~--~~~v~~~~~spDg~~l~~~~~---~~--g~~v~v~d~~~~~~~~~~~~~~~v-~~~~~spd 96 (360)
T d1k32a3 25 QAFIQDVSGTYVLKVPE--PLRIRYVRRGGDTKVAFIHGT---RE--GDFLGIYDYRTGKAEKFEENLGNV-FAMGVDRN 96 (360)
T ss_dssp EEEEECTTSSBEEECSC--CSCEEEEEECSSSEEEEEEEE---TT--EEEEEEEETTTCCEEECCCCCCSE-EEEEECTT
T ss_pred eEEEEECCCCcEEEccC--CCCEEEEEECCCCCEEEEEEc---CC--CCEEEEEECCCCcEEEeeCCCceE-Eeeeeccc
Confidence 57778888887777642 222222222336766655544 21 136899999988877664332221 11122226
Q ss_pred CeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEEEcCccCC----CCCCCeEEEEECCCCc
Q psy2979 295 SCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYVLGGEEGW----DGYHDSIECYDVDNDS 370 (400)
Q Consensus 295 ~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~----~~~~~~v~~yd~~~~~ 370 (400)
++.++.++. ...++.++..+.+...............+..-+|+.+++.+.... ......+..||..+++
T Consensus 97 g~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~ 170 (360)
T d1k32a3 97 GKFAVVAND------RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 170 (360)
T ss_dssp SSEEEEEET------TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred ccccceecc------ccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCc
Confidence 666666665 567899999888765554333222222222236665555433111 1233568889988875
Q ss_pred EEE
Q psy2979 371 WEI 373 (400)
Q Consensus 371 W~~ 373 (400)
=..
T Consensus 171 ~~~ 173 (360)
T d1k32a3 171 IFA 173 (360)
T ss_dssp EEE
T ss_pred eee
Confidence 333
|
| >d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Hemopexin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=92.70 E-value=1.4 Score=33.66 Aligned_cols=93 Identities=16% Similarity=0.235 Sum_probs=58.2
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceE---Ec----cCCCCcccccEEEE------eCCEEEEEcCccccCCCCcce
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWS---YI----EPMKLAVTSPAVVA------HEGMLYVTGGAILEDGDGIEQ 264 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~---~~----~~l~~~~~~~~~~~------~~~~iyv~GG~~~~~~~~~~~ 264 (400)
++++|++-| +.+++|+..+-... .+ +.+|... . ++.. -++++|++-|. .
T Consensus 59 ~~~~yfFkG-------~~yw~y~~~~~~~gyPk~i~~~~~glp~~i-D-AA~~~~~~~~~~~~~yfFkg~---------~ 120 (192)
T d1qhua1 59 HTSVYLIKG-------DKVWVYTSEKNEKVYPKSLQDEFPGIPFPL-D-AAVECHRGECQDEGILFFQGN---------R 120 (192)
T ss_dssp TTEEEEEET-------TEEEEECC-------CEEHHHHSTTCCSSC-C-EEEEECBBTBSSSEEEEEETT---------E
T ss_pred CCcEEEEeC-------CEEEEEeCCccccCCCcChHHhCCCCCCCc-e-EEEEccccccCCCeEEEEeCC---------e
Confidence 679999988 56888875443321 22 1233222 1 2222 27899999887 7
Q ss_pred EEEEeCCCCc-----eeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCe
Q psy2979 265 VQRYNPKVNQ-----WQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENT 322 (400)
Q Consensus 265 v~~yd~~~~~-----W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 322 (400)
.++||..+.. |..++ . .-+++..++++|++-|. ..++||..+.+
T Consensus 121 yw~yd~~~~~~~~~~w~gip-----~-~daA~~~~g~~YfFkg~--------~y~r~~~~~~~ 169 (192)
T d1qhua1 121 KWFWDLTTGTKKERSWPAVG-----N-CTSALRWLGRYYCFQGN--------QFLRFNPVSGE 169 (192)
T ss_dssp EEEEETTTTEEEEECCTTSC-----C-CSEEEEETTEEEEEETT--------EEEEECTTTCC
T ss_pred EEEEeCCCCCcccccccCcC-----C-cceeEEeCCcEEEEECC--------EEEEEcCCcce
Confidence 8999988764 43332 1 23445669999999864 79999987765
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.56 E-value=2.2 Score=34.71 Aligned_cols=132 Identities=13% Similarity=0.103 Sum_probs=67.4
Q ss_pred CCEEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCccccc-EEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCce
Q psy2979 198 DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSP-AVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQW 275 (400)
Q Consensus 198 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W 275 (400)
.+.+++.|+.+ ..+..||..+++-... +......- +++. -++.+++.|+. ++ .+..||......
T Consensus 195 ~~~~~~~~~~d-----~~v~i~d~~~~~~~~~--~~~h~~~i~~v~~~p~~~~l~s~s~---d~----~i~~~~~~~~~~ 260 (340)
T d1tbga_ 195 DTRLFVSGACD-----ASAKLWDVREGMCRQT--FTGHESDINAICFFPNGNAFATGSD---DA----TCRLFDLRADQE 260 (340)
T ss_dssp TSSEEEEEETT-----TEEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEET---TS----CEEEEETTTTEE
T ss_pred ccceeEEeecC-----ceEEEEECCCCcEEEE--EeCCCCCeEEEEECCCCCEEEEEeC---CC----eEEEEeeccccc
Confidence 44556666544 3578888877653221 11111111 2222 25677777776 44 588888877665
Q ss_pred eeccCCCCCceeeeEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE--CCEEEEEcCc
Q psy2979 276 QDLAPMLIPRSGAAICAL--DSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI--DGKIYVLGGE 351 (400)
Q Consensus 276 ~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~lyv~GG~ 351 (400)
...-...........+.+ ++.+++.|+. ...+..||..+.+-.. .++.....-..+.+ +++.++.||.
T Consensus 261 ~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~------dg~i~iwd~~~~~~~~--~~~~H~~~V~~l~~s~d~~~l~s~s~ 332 (340)
T d1tbga_ 261 LMTYSHDNIICGITSVSFSKSGRLLLAGYD------DFNCNVWDALKADRAG--VLAGHDNRVSCLGVTDDGMAVATGSW 332 (340)
T ss_dssp EEEECCTTCCSCEEEEEECSSSCEEEEEET------TSCEEEEETTTCCEEE--EECCCSSCEEEEEECTTSSCEEEEET
T ss_pred ccccccccccCceEEEEECCCCCEEEEEEC------CCEEEEEECCCCcEEE--EEcCCCCCEEEEEEeCCCCEEEEEcc
Confidence 433222222222222222 5677777765 4578899987765322 22211111122233 5666677776
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=92.28 E-value=1.6 Score=39.85 Aligned_cols=116 Identities=15% Similarity=0.285 Sum_probs=71.5
Q ss_pred EEECCEEEEEcccCCCCCCCeEEEEeCCCC--ceEEccCCCC--------cccccEEEEeCCEEEEEcCccccCCCCcce
Q psy2979 195 AMLDGFVYAVGGWDGSCRLDSVERYDPTKN--EWSYIEPMKL--------AVTSPAVVAHEGMLYVTGGAILEDGDGIEQ 264 (400)
Q Consensus 195 ~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~l~~--------~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 264 (400)
++.++.||+... ...++.+|..|+ .|+.-+..+. .....+.+..++++|+.... ..
T Consensus 74 iv~~g~vyv~t~------~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~~--------g~ 139 (573)
T d1kb0a2 74 VVVDGIMYVSAS------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWD--------GR 139 (573)
T ss_dssp EEETTEEEEECG------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTT--------SE
T ss_pred EEECCEEEEECC------CCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEecc--------cc
Confidence 457999998754 245888999887 4876544331 11223566778888876432 26
Q ss_pred EEEEeCCCCc--eeecc-CCCCC--ceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCe--EEE
Q psy2979 265 VQRYNPKVNQ--WQDLA-PMLIP--RSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENT--WEY 325 (400)
Q Consensus 265 v~~yd~~~~~--W~~~~-~~~~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~ 325 (400)
++++|..+.+ |+.-. ..+.. ......+++++.+++-+....... ...+..||..|++ |+.
T Consensus 140 l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~-~G~v~a~D~~TG~~~W~~ 206 (573)
T d1kb0a2 140 LIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGV-RGYITAYDAETGERKWRW 206 (573)
T ss_dssp EEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCC-BCEEEEEETTTCCEEEEE
T ss_pred eeeeccccccceecccCccCCcceEEeecceEEEeccEEEeeccccccc-cceEEEEecCCccceeee
Confidence 8889987776 76532 22211 123344566888766332222222 5689999999986 875
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=92.22 E-value=1.7 Score=39.48 Aligned_cols=117 Identities=15% Similarity=0.255 Sum_probs=72.4
Q ss_pred EEECCEEEEEcccCCCCCCCeEEEEeCCCC--ceEEccCCCC--------cccccEEEEeCCEEEEEcCccccCCCCcce
Q psy2979 195 AMLDGFVYAVGGWDGSCRLDSVERYDPTKN--EWSYIEPMKL--------AVTSPAVVAHEGMLYVTGGAILEDGDGIEQ 264 (400)
Q Consensus 195 ~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~l~~--------~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 264 (400)
++.++.||+.... ..+..+|..|+ .|+.-+..+. .......+..+++||+.... ..
T Consensus 63 iv~~g~vyv~t~~------~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--------g~ 128 (560)
T d1kv9a2 63 LFHDGVIYTSMSW------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLD--------GR 128 (560)
T ss_dssp EEETTEEEEEEGG------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTT--------SE
T ss_pred EEECCEEEEECCC------CeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeCC--------CE
Confidence 5679999987542 46888898887 4876443321 12233456678888876443 36
Q ss_pred EEEEeCCCCc--eeeccC-CCC-CceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCe--EEEc
Q psy2979 265 VQRYNPKVNQ--WQDLAP-MLI-PRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENT--WEYK 326 (400)
Q Consensus 265 v~~yd~~~~~--W~~~~~-~~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~ 326 (400)
++++|..+.+ |+.... ... ........+.++.+++-+....... ...+..||..|++ |+.-
T Consensus 129 l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~-~G~v~a~D~~TG~~~W~~~ 195 (560)
T d1kv9a2 129 LIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGV-RGFVSAYDADTGKLAWRFY 195 (560)
T ss_dssp EEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCC-BCEEEEEETTTCCEEEEEE
T ss_pred EEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccc-cceEEEEECCCceEEeeee
Confidence 8999987765 765432 221 2223345566787776443322222 4679999999885 7653
|
| >d1hxna_ b.66.1.1 (A:) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Hemopexin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=91.71 E-value=0.73 Score=35.91 Aligned_cols=136 Identities=21% Similarity=0.302 Sum_probs=71.8
Q ss_pred ECCEEEEEcccCCCCCCCeEEEEeCCCCceE--Ec----cCCCCcccccEEEEeCCEEEEEcCccccCCCCcceEEEEeC
Q psy2979 197 LDGFVYAVGGWDGSCRLDSVERYDPTKNEWS--YI----EPMKLAVTSPAVVAHEGMLYVTGGAILEDGDGIEQVQRYNP 270 (400)
Q Consensus 197 ~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~--~~----~~l~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~ 270 (400)
.+|.+|++-| ...++++.....|. .+ +.+|... . ++...++++|++-|. .+++|..
T Consensus 18 ~~G~~y~Fkg-------~~~wr~~~~~~~~~p~~I~~~W~~lp~~I-D-AA~~~~~~~yfFkG~---------~y~~y~~ 79 (210)
T d1hxna_ 18 NHGATYVFSG-------SHYWRLDTNRDGWHSWPIAHQWPQGPSTV-D-AAFSWEDKLYLIQDT---------KVYVFLT 79 (210)
T ss_dssp TTSCEEEEET-------TEEEESSSSSCTTCCEEGGGTCTTSCSSC-S-EEEEETTEEEEEETT---------EEEEEEC
T ss_pred CCCCEEEEEC-------CEEEEEcCCCCCCCcccHHHhcCCCCccc-c-eEEEeCCeEEEEecC---------EEEEEEc
Confidence 4789999977 34555554443331 11 2344333 2 444568999999887 6888854
Q ss_pred CC-Cce-----eecc-CCCCCc----eee-eEEEE--CCeEEEEcCcCCCCCCCCeEEEEECCCC---eEEEccCCcCc-
Q psy2979 271 KV-NQW-----QDLA-PMLIPR----SGA-AICAL--DSCIYVLGGWHASTENTNRVECYHIAEN---TWEYKSPMKEK- 332 (400)
Q Consensus 271 ~~-~~W-----~~~~-~~~~~r----~~~-~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~---~W~~~~~~~~~- 332 (400)
.+ ++- ..+. .++.+. ... ++... ++++|++-|. ..++||..++ .+...+-.+..
T Consensus 80 ~~~~~~~~GyPk~i~~~~g~p~~~~~~~IDAA~~~~~~gk~yffkG~--------~y~ryd~~~~~~~~~~~~p~~~~~v 151 (210)
T d1hxna_ 80 KGGYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAGR--------RLWWLDLKSGAQATWTELPWPHEKV 151 (210)
T ss_dssp SSSCEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEETT--------EEEEEEGGGGGGCCCEEECCSCSCC
T ss_pred CCCcCccCCCCcChhhccCCCCCCCCCcEeEEEEeCCCCEEEEEECC--------EEEEEcCCcCCccccccCCCCCccc
Confidence 32 111 1111 111111 111 22222 6899999874 7999998763 23333311110
Q ss_pred ---------cCcceEEEECCEEEEEcCccCCCCCCCeEEEEEC
Q psy2979 333 ---------RYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDV 366 (400)
Q Consensus 333 ---------~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~ 366 (400)
....++...++.+|++-|. ..++||.
T Consensus 152 Daa~~~~~~~~~~~~~~~~~~~YfFkG~--------~y~r~~~ 186 (210)
T d1hxna_ 152 DGALCMEKPLGPNSCSTSGPNLYLIHGP--------NLYCYRH 186 (210)
T ss_dssp SEEEEESSCSSSCCSCSSSCEEEEEETT--------EEEEESS
T ss_pred ceeeeecCCCCccceeecCCcEEEEECC--------EEEEEeC
Confidence 0011111224678999886 6788873
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=91.61 E-value=2.9 Score=34.10 Aligned_cols=209 Identities=12% Similarity=0.049 Sum_probs=111.1
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEE-CCeEEEEEe-ecCEEEE--EECCCCCeEEccCC
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVS-GRNTIYCLD-IVDIVYV--AASMHKILHSLGSL 185 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~-~~~~~~~--yd~~~~~w~~~~~~ 185 (400)
..+++.... ...++.+++.. +...+...+. .-.+++.. ++. +|+.. ....+.. .+....+-..+...
T Consensus 39 G~l~vt~~~-----~~~I~~i~p~g-~~~~~~~~~~--~~~gla~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (302)
T d2p4oa1 39 GTIFVTNHE-----VGEIVSITPDG-NQQIHATVEG--KVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGTVETLLTL 109 (302)
T ss_dssp SCEEEEETT-----TTEEEEECTTC-CEEEEEECSS--EEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred CCEEEEeCC-----CCEEEEEeCCC-CEEEEEcCCC--CcceEEEcCCCC-eEEEecCCceEEEEEecccccceeecccc
Confidence 355555432 24678888765 4444443332 22345544 556 88872 2333333 34444445555444
Q ss_pred CCcceeeeEEEE-CCEEEEEcccCCCCCCCeEEEEeCCCCceEEc---cCC-----CCcc-cccEEEEeCCEEEEEcCcc
Q psy2979 186 KFDFDVSGIAML-DGFVYAVGGWDGSCRLDSVERYDPTKNEWSYI---EPM-----KLAV-TSPAVVAHEGMLYVTGGAI 255 (400)
Q Consensus 186 ~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~---~~l-----~~~~-~~~~~~~~~~~iyv~GG~~ 255 (400)
+.......++.. ++.+|+.-. ....++++|+.++.-... +.+ .... ........++.+|+....
T Consensus 110 ~~~~~~n~i~~~~~g~~~v~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~- 183 (302)
T d2p4oa1 110 PDAIFLNGITPLSDTQYLTADS-----YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTE- 183 (302)
T ss_dssp TTCSCEEEEEESSSSEEEEEET-----TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETT-
T ss_pred CCccccceeEEccCCCEEeecc-----ccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCC-
Confidence 443333344433 678887532 235688888887752221 111 1111 112344567888887665
Q ss_pred ccCCCCcceEEEEeCCCCceeecc----CCCCCceeeeEEE-ECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCc
Q psy2979 256 LEDGDGIEQVQRYNPKVNQWQDLA----PMLIPRSGAAICA-LDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMK 330 (400)
Q Consensus 256 ~~~~~~~~~v~~yd~~~~~W~~~~----~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~ 330 (400)
...+++++.....-.... ....+ .+++. -+|.||+.... .++|.+|+|..+.-. +....
T Consensus 184 ------~~~i~~~~~~~~~~~~~~~~~~~~~~p---dgia~d~dG~l~va~~~------~~~V~~i~p~G~~~~-~~~~~ 247 (302)
T d2p4oa1 184 ------KMLLLRIPVDSTDKPGEPEIFVEQTNI---DDFAFDVEGNLYGATHI------YNSVVRIAPDRSTTI-IAQAE 247 (302)
T ss_dssp ------TTEEEEEEBCTTSCBCCCEEEEESCCC---SSEEEBTTCCEEEECBT------TCCEEEECTTCCEEE-EECGG
T ss_pred ------CCeEEeccccccccccccccccCCCCC---cceEECCCCCEEEEEcC------CCcEEEECCCCCEEE-EEecC
Confidence 458999987655322111 11111 22333 37789988754 467999999866533 33334
Q ss_pred CccCcceEEEEC------CEEEEEc
Q psy2979 331 EKRYRPGIAVID------GKIYVLG 349 (400)
Q Consensus 331 ~~~~~~~~~~~~------~~lyv~G 349 (400)
.+......++++ +.|||..
T Consensus 248 ~~~~~pt~vafg~~~~D~~~Lyvtt 272 (302)
T d2p4oa1 248 QGVIGSTAVAFGQTEGDCTAIYVVT 272 (302)
T ss_dssp GTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred CCCCCceEEEEcCCCCCCCEEEEEC
Confidence 445566777773 3588864
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=91.47 E-value=4.8 Score=36.37 Aligned_cols=117 Identities=7% Similarity=0.152 Sum_probs=70.6
Q ss_pred EEECCEEEEEcccCCCCCCCeEEEEeC-CCC--ceEEccCCCCcc--------cccEEEEeCCEEEEEcCccccCCCCcc
Q psy2979 195 AMLDGFVYAVGGWDGSCRLDSVERYDP-TKN--EWSYIEPMKLAV--------TSPAVVAHEGMLYVTGGAILEDGDGIE 263 (400)
Q Consensus 195 ~~~~~~iyv~GG~~~~~~~~~v~~yd~-~~~--~W~~~~~l~~~~--------~~~~~~~~~~~iyv~GG~~~~~~~~~~ 263 (400)
.+.++.+|+..+.. ..+...|. .|+ .|+.-+..+... ....++..+++||+.... .
T Consensus 59 ~v~~g~vyv~t~~~-----~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~~~~--------g 125 (571)
T d2ad6a1 59 LVIGDMMYVHSAFP-----NNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQAN--------G 125 (571)
T ss_dssp EEETTEEEEECSTT-----TCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTT--------S
T ss_pred EEECCEEEEecCCC-----CeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceeeCCeEEEEeCC--------C
Confidence 35799999986532 34777775 344 477654433221 112457778999875332 3
Q ss_pred eEEEEeCCCCc--eee-ccC-CCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCe--EEE
Q psy2979 264 QVQRYNPKVNQ--WQD-LAP-MLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENT--WEY 325 (400)
Q Consensus 264 ~v~~yd~~~~~--W~~-~~~-~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~ 325 (400)
.+++.|.++.+ |.. +.. -+.......-+++++.+|+-+....... ...+..||..|++ |+.
T Consensus 126 ~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~-~G~v~a~D~~TG~~~W~~ 192 (571)
T d2ad6a1 126 HLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGV-RGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp EEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTC-CCEEEEEETTTCCEEEEE
T ss_pred cEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccc-cCcEEEEECCCCcEEEEE
Confidence 68999998876 764 221 1122223344677888887554332223 5689999999885 864
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=89.41 E-value=3.4 Score=37.66 Aligned_cols=64 Identities=17% Similarity=0.323 Sum_probs=39.3
Q ss_pred CCeEEEEECCCCe--EEEc-cCCc-CccCcceEEEECCEEEEEcCccCCCCCCCeEEEEECCCCc--EEEe
Q psy2979 310 TNRVECYHIAENT--WEYK-SPMK-EKRYRPGIAVIDGKIYVLGGEEGWDGYHDSIECYDVDNDS--WEIM 374 (400)
Q Consensus 310 ~~~v~~yd~~~~~--W~~~-~~~~-~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~ 374 (400)
...++..|.++++ |+.- .+.. .......-.+.++++|+-.+. ........|..||..|++ |+--
T Consensus 130 dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~-~e~~~~G~v~A~Da~TG~~~W~~~ 199 (596)
T d1w6sa_ 130 DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSG-AELGVRGYLTAYDVKTGEQVWRAY 199 (596)
T ss_dssp TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBC-GGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeecc-ccccccCceEEEECCCCcEEEEee
Confidence 3578889988875 7653 2221 112333456779998874322 222345789999999874 8743
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=89.21 E-value=5.3 Score=33.25 Aligned_cols=86 Identities=14% Similarity=0.147 Sum_probs=50.6
Q ss_pred CCeEEEEcCcC---CCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEE-CCE--EEEEcCccCCCCCCCeEEEEECC
Q psy2979 294 DSCIYVLGGWH---ASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVI-DGK--IYVLGGEEGWDGYHDSIECYDVD 367 (400)
Q Consensus 294 ~~~iyv~GG~~---~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~--lyv~GG~~~~~~~~~~v~~yd~~ 367 (400)
++.+|+..... .... ...++.+|..+++ .+..++......++..- +|+ +|+.+.. .+.|.+||+.
T Consensus 275 ~~~~~v~~~~~~~~~~~~-~~~v~v~D~~t~~--~~~~~~~~~~~~~~a~spDG~~~ly~s~~~------~~~v~v~D~~ 345 (368)
T d1mdah_ 275 TDGIMILTVEHSRSCLAA-AENTSSVTASVGQ--TSGPISNGHDSDAIIAAQDGASDNYANSAG------TEVLDIYDAA 345 (368)
T ss_dssp TTEEEEEEEECSSCTTSC-EEEEEEEESSSCC--EEECCEEEEEECEEEECCSSSCEEEEEETT------TTEEEEEESS
T ss_pred CCEEEEEecCCCceeecC-CceEEEEECCCCc--EeEEecCCCceeEEEECCCCCEEEEEEeCC------CCeEEEEECC
Confidence 55677653211 1112 4679999998875 44444443333333322 554 7887765 2579999999
Q ss_pred CCcEEEecCCCCCCCceeeEEEc
Q psy2979 368 NDSWEIMSHLPSARSWLGCVPLQ 390 (400)
Q Consensus 368 ~~~W~~~~~~~~~r~~~~~~~~~ 390 (400)
+++ .+..++.+..=.++++.+
T Consensus 346 tgk--~~~~i~~g~~P~~l~~~~ 366 (368)
T d1mdah_ 346 SDQ--DQSSVELDKGPESLSVQN 366 (368)
T ss_dssp SCE--EEEECCCCSCCCEEECCC
T ss_pred CCC--EEEEEECCCCCCEEEEec
Confidence 985 556666666555555543
|
| >d1hxna_ b.66.1.1 (A:) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Hemopexin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=89.03 E-value=3 Score=32.21 Aligned_cols=99 Identities=12% Similarity=0.234 Sum_probs=57.6
Q ss_pred EeCCEEEEEcCccccCCCCcceEEEEeCCCCceee--c----cCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEE
Q psy2979 243 AHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQD--L----APMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECY 316 (400)
Q Consensus 243 ~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~--~----~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~y 316 (400)
..+|.+|++-|. ..|+++.....|.. + +.+|.. -=++...++++|++-|. .+++|
T Consensus 17 ~~~G~~y~Fkg~---------~~wr~~~~~~~~~p~~I~~~W~~lp~~--IDAA~~~~~~~yfFkG~--------~y~~y 77 (210)
T d1hxna_ 17 DNHGATYVFSGS---------HYWRLDTNRDGWHSWPIAHQWPQGPST--VDAAFSWEDKLYLIQDT--------KVYVF 77 (210)
T ss_dssp CTTSCEEEEETT---------EEEESSSSSCTTCCEEGGGTCTTSCSS--CSEEEEETTEEEEEETT--------EEEEE
T ss_pred CCCCCEEEEECC---------EEEEEcCCCCCCCcccHHHhcCCCCcc--cceEEEeCCeEEEEecC--------EEEEE
Confidence 368999999876 56777665554421 1 123322 22344568899999874 78888
Q ss_pred ECCCCeEEEccCCc--------Ccc----CcceEEEE---CCEEEEEcCccCCCCCCCeEEEEECCCC
Q psy2979 317 HIAENTWEYKSPMK--------EKR----YRPGIAVI---DGKIYVLGGEEGWDGYHDSIECYDVDND 369 (400)
Q Consensus 317 d~~~~~W~~~~~~~--------~~~----~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~~~ 369 (400)
...+.. ...+..| .+. ..--++.. ++++|++-|. ..|+||..++
T Consensus 78 ~~~~~~-~~~~GyPk~i~~~~g~p~~~~~~~IDAA~~~~~~gk~yffkG~--------~y~ryd~~~~ 136 (210)
T d1hxna_ 78 LTKGGY-TLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAGR--------RLWWLDLKSG 136 (210)
T ss_dssp ECSSSC-EECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEETT--------EEEEEEGGGG
T ss_pred EcCCCc-CccCCCCcChhhccCCCCCCCCCcEeEEEEeCCCCEEEEEECC--------EEEEEcCCcC
Confidence 654321 1222111 111 11112222 5899999885 6899998763
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.10 E-value=5.3 Score=36.18 Aligned_cols=119 Identities=17% Similarity=0.255 Sum_probs=69.1
Q ss_pred EEEEeCCEEEEEcCccccCCCCcceEEEEeCCCCc--eeeccCCCC---C---ceeeeEEEECCeEEEEcCcCCCCCCCC
Q psy2979 240 AVVAHEGMLYVTGGAILEDGDGIEQVQRYNPKVNQ--WQDLAPMLI---P---RSGAAICALDSCIYVLGGWHASTENTN 311 (400)
Q Consensus 240 ~~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~---~---r~~~~~~~~~~~iyv~GG~~~~~~~~~ 311 (400)
+-++.++.||+.... ..++++|+.+.+ |+.-...+. + ...-+.+..+++||+... ..
T Consensus 63 tPiv~~g~vy~~t~~--------~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~t~-------~~ 127 (582)
T d1flga_ 63 QAIVSDGVIYVTASY--------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL-------DA 127 (582)
T ss_dssp CCEEETTEEEEEETT--------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET-------TT
T ss_pred CCEEECCEEEEeCCC--------CeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEeCCceEEecC-------CC
Confidence 346789999998664 378888888766 875433321 1 112245667888887543 45
Q ss_pred eEEEEECCCC--eEEEcc-CCcC--ccCcceEEEEC---CEEEEEcCccC-CCCCCCeEEEEECCCCc--EEE
Q psy2979 312 RVECYHIAEN--TWEYKS-PMKE--KRYRPGIAVID---GKIYVLGGEEG-WDGYHDSIECYDVDNDS--WEI 373 (400)
Q Consensus 312 ~v~~yd~~~~--~W~~~~-~~~~--~~~~~~~~~~~---~~lyv~GG~~~-~~~~~~~v~~yd~~~~~--W~~ 373 (400)
.+.++|..++ .|+.-. +... .......+..+ +.+.++.|... .......+..||+.+++ |+.
T Consensus 128 ~l~alda~tG~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~ 200 (582)
T d1flga_ 128 SVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMR 200 (582)
T ss_dssp EEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEE
T ss_pred eEEEecccccceeeeecccCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEE
Confidence 7999999988 586543 2211 11222233332 33444443311 11234678999999875 654
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.82 E-value=6.9 Score=31.84 Aligned_cols=107 Identities=17% Similarity=0.146 Sum_probs=58.1
Q ss_pred EEEEEcccCCCCCCCeEEEEeCCCCceEEccCCCCccccc--EEEEe--CCEEEEEcCccccCCCCcceEEEEeCCCCce
Q psy2979 200 FVYAVGGWDGSCRLDSVERYDPTKNEWSYIEPMKLAVTSP--AVVAH--EGMLYVTGGAILEDGDGIEQVQRYNPKVNQW 275 (400)
Q Consensus 200 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~~~--~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W 275 (400)
.+.+.||.+ ..+..||..+.+-............. +++.. .+.+++.||. ++ .+..||..+.+.
T Consensus 173 ~~~~~~~~d-----~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~---d~----~i~iwd~~~~~~ 240 (325)
T d1pgua1 173 MRSMTVGDD-----GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS---DR----KISCFDGKSGEF 240 (325)
T ss_dssp CEEEEEETT-----TEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET---TC----CEEEEETTTCCE
T ss_pred ceEEEeecc-----cccccccccccccceecccccCCCCccEEeeeccccceecccccc---cc----ceeeeeeccccc
Confidence 455566654 35777887655432221111122221 22222 3577777877 54 689999877764
Q ss_pred e-eccC--CCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEE
Q psy2979 276 Q-DLAP--MLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWE 324 (400)
Q Consensus 276 ~-~~~~--~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 324 (400)
. .+.. .+.....++....+++.++.|+. ...+..||..+++-.
T Consensus 241 ~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~------D~~i~iwd~~~~~~~ 286 (325)
T d1pgua1 241 LKYIEDDQEPVQGGIFALSWLDSQKFATVGA------DATIRVWDVTTSKCV 286 (325)
T ss_dssp EEECCBTTBCCCSCEEEEEESSSSEEEEEET------TSEEEEEETTTTEEE
T ss_pred cccccccccccccceeeeeccCCCEEEEEeC------CCeEEEEECCCCCEE
Confidence 3 2221 11111122333346777788776 457889999988743
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=86.50 E-value=7.5 Score=31.99 Aligned_cols=71 Identities=13% Similarity=0.071 Sum_probs=40.0
Q ss_pred CCeEEEEECCCCeEEEccCCcCccCcceEEEE-CCE--EEEEcCccCCCCCCCeEEEEECCCCcEEEecCCC-CCCCcee
Q psy2979 310 TNRVECYHIAENTWEYKSPMKEKRYRPGIAVI-DGK--IYVLGGEEGWDGYHDSIECYDVDNDSWEIMSHLP-SARSWLG 385 (400)
Q Consensus 310 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~--lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~r~~~~ 385 (400)
.+.+..+|..+++=.. .++.+.....++.- +|+ +|+.++. .+.|.+||..+++ .+..++ .++.=..
T Consensus 297 ~~~v~~~d~~t~~~~~--~~~~~~~~~~~a~spDG~~~l~vt~~~------d~~v~v~D~~tg~--~~~~~~~~g~~P~~ 366 (373)
T d2madh_ 297 AKEVTSVTGLVGQTSS--QISLGHDVDAISVAQDGGPDLYALSAG------TEVLHIYDAGAGD--QDQSTVELGSGPQV 366 (373)
T ss_pred CCeEEEEECCCCcEEE--EecCCCCeeEEEECCCCCEEEEEEeCC------CCeEEEEECCCCC--EEEEECCCCCCCcE
Confidence 4678899988875322 22222222233222 554 5666665 2579999999875 445554 3444455
Q ss_pred eEEEc
Q psy2979 386 CVPLQ 390 (400)
Q Consensus 386 ~~~~~ 390 (400)
+++.+
T Consensus 367 l~~~~ 371 (373)
T d2madh_ 367 LSVMN 371 (373)
T ss_pred EEEec
Confidence 55544
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=83.10 E-value=6.4 Score=33.60 Aligned_cols=96 Identities=7% Similarity=0.030 Sum_probs=52.5
Q ss_pred CeEEEEeCCCCceEEccCCCCcccccEEEE-eCCEEEEEcCccccCCCCcceEEEEeCCCCceeeccCCCCCceeeeEEE
Q psy2979 214 DSVERYDPTKNEWSYIEPMKLAVTSPAVVA-HEGMLYVTGGAILEDGDGIEQVQRYNPKVNQWQDLAPMLIPRSGAAICA 292 (400)
Q Consensus 214 ~~v~~yd~~~~~W~~~~~l~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~ 292 (400)
.++..+|..+++-. ..++....-++++. -+|+..++++. ++ .+..||..+.+-..+..++........+.
T Consensus 42 g~v~vwD~~t~~~~--~~l~~g~~~~~vafSPDGk~l~~~~~---d~----~v~vwd~~t~~~~~~~~i~~~~~~~~~~~ 112 (426)
T d1hzua2 42 GQIALVDGDSKKIV--KVIDTGYAVHISRMSASGRYLLVIGR---DA----RIDMIDLWAKEPTKVAEIKIGIEARSVES 112 (426)
T ss_dssp TEEEEEETTTCSEE--EEEECCSSEEEEEECTTSCEEEEEET---TS----EEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred CEEEEEECCCCcEE--EEEeCCCCeeEEEECCCCCEEEEEeC---CC----CEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence 56888899887643 22333222233332 25554445555 33 78999998887555444333322222222
Q ss_pred -E----CC-eEEEEcCcCCCCCCCCeEEEEECCCCeEE
Q psy2979 293 -L----DS-CIYVLGGWHASTENTNRVECYHIAENTWE 324 (400)
Q Consensus 293 -~----~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 324 (400)
. +| .+|+.+.. ...+..+|..++.-.
T Consensus 113 s~~~spDG~~l~v~~~~------~~~v~i~d~~~~~~~ 144 (426)
T d1hzua2 113 SKFKGYEDRYTIAGAYW------PPQFAIMDGETLEPK 144 (426)
T ss_dssp CCSTTCTTTEEEEEEEE------SSEEEEEETTTCCEE
T ss_pred eeeecCCCCEEEEeecC------CCeEEEEcCCcccee
Confidence 1 34 45555544 467888888877533
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| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.15 E-value=10 Score=29.27 Aligned_cols=219 Identities=14% Similarity=0.056 Sum_probs=100.6
Q ss_pred cEEEEEeccCCCcccceEEEEEcCCCceEEccCCcccceeeeEEEECCeEEEEEeecCEEEEEECCCCCeEEccCCCCcc
Q psy2979 110 NVIIAVGGEDDKVVLRSVEGFCVKTKVWKTLSCLPFAISKHGLVVSGRNTIYCLDIVDIVYVAASMHKILHSLGSLKFDF 189 (400)
Q Consensus 110 ~~i~~~gg~~~~~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~iyv~~~~~~~~~yd~~~~~w~~~~~~~~~r 189 (400)
+..++.|+.+ ..+.++|..+++-... +.........+..++..++.......+..++...+............
T Consensus 25 ~~~l~sgs~D-----g~i~vWd~~~~~~~~~--l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~ 97 (293)
T d1p22a2 25 DQKIVSGLRD-----NTIKIWDKNTLECKRI--LTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEA 97 (293)
T ss_dssp SSEEEEEESS-----SCEEEEESSSCCEEEE--ECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSC
T ss_pred CCEEEEEeCC-----CeEEEEECCCCcEEEE--EecCCCCEeeeecccceeecccccccccccccccccccccccccccc
Confidence 4456677765 4678888877664321 11111111122235551333344556788888777655433322111
Q ss_pred eeeeEEEECCEEEEEcccCCCCCCCeEEEEeCCCCce-EEccCCCCccccc-EEEEeCCEEEEEcCccccCCCCcceEEE
Q psy2979 190 DVSGIAMLDGFVYAVGGWDGSCRLDSVERYDPTKNEW-SYIEPMKLAVTSP-AVVAHEGMLYVTGGAILEDGDGIEQVQR 267 (400)
Q Consensus 190 ~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W-~~~~~l~~~~~~~-~~~~~~~~iyv~GG~~~~~~~~~~~v~~ 267 (400)
........+.+.. ++.. ..+..+|..+..- .....+....... ........++.. +. + ..+..
T Consensus 98 -~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-s~---d----~~i~~ 162 (293)
T d1p22a2 98 -VLHLRFNNGMMVT-CSKD-----RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSA-SG---D----RTIKV 162 (293)
T ss_dssp -EEEEECCTTEEEE-EETT-----SCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEE-ET---T----SEEEE
T ss_pred -cccccccccceee-cccc-----cceeEeeccccccccccccccccccccccceecccccccc-cC---C----Cceee
Confidence 1111122333333 3222 2355566554431 1111111111111 222234444433 33 2 36888
Q ss_pred EeCCCCceeeccCCCCCceeeeEEEECCeEEEEcCcCCCCCCCCeEEEEECCCCeEEEccCCcCccCcceEEEECCEEEE
Q psy2979 268 YNPKVNQWQDLAPMLIPRSGAAICALDSCIYVLGGWHASTENTNRVECYHIAENTWEYKSPMKEKRYRPGIAVIDGKIYV 347 (400)
Q Consensus 268 yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~lyv 347 (400)
||..+.+-... +............++..++.|+. ...+..||+.+.+......... ........++..++
T Consensus 163 ~d~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~--~~v~~~~~~~~~l~ 232 (293)
T d1p22a2 163 WNTSTCEFVRT--LNGHKRGIACLQYRDRLVVSGSS------DNTIRLWDIECGACLRVLEGHE--ELVRCIRFDNKRIV 232 (293)
T ss_dssp EETTTCCEEEE--EECCSSCEEEEEEETTEEEEEET------TSCEEEEETTTCCEEEEECCCS--SCEEEEECCSSEEE
T ss_pred ecCCCCcEEEE--EcccccccccccCCCCeEEEecC------CCEEEEEecccceeeeeecccc--eeeeeccccceEEE
Confidence 88876653221 11111112233345555666665 4568889988776544332111 11223344666667
Q ss_pred EcCccCCCCCCCeEEEEEC
Q psy2979 348 LGGEEGWDGYHDSIECYDV 366 (400)
Q Consensus 348 ~GG~~~~~~~~~~v~~yd~ 366 (400)
.|+. + ..|.+||.
T Consensus 233 sg~~-d-----g~i~iwd~ 245 (293)
T d1p22a2 233 SGAY-D-----GKIKVWDL 245 (293)
T ss_dssp EEET-T-----SCEEEEEH
T ss_pred EEcC-C-----CEEEEEEC
Confidence 7766 3 35677774
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| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=81.01 E-value=12 Score=29.91 Aligned_cols=66 Identities=9% Similarity=-0.013 Sum_probs=34.7
Q ss_pred CcEEEEEeccCCCcccceEEEEEcCCC-ceEEccCCcccceeeeEEEE-CCeEEEEEe-ecCEEEEEECCCCCe
Q psy2979 109 INVIIAVGGEDDKVVLRSVEGFCVKTK-VWKTLSCLPFAISKHGLVVS-GRNTIYCLD-IVDIVYVAASMHKIL 179 (400)
Q Consensus 109 ~~~i~~~gg~~~~~~~~~~~~yd~~~~-~w~~~~~~~~~~~~~~~~~~-~~~~iyv~~-~~~~~~~yd~~~~~w 179 (400)
++.+++.+..+ ..+.+|+.... ....+..++.+..-..++.. +++.||+.. ....+..|+...+.+
T Consensus 3 ~~~v~v~~~~~-----~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~ 71 (333)
T d1ri6a_ 3 KQTVYIASPES-----QQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG 71 (333)
T ss_dssp EEEEEEEEGGG-----TEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred ceEEEEECCCC-----CcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCC
Confidence 35677776544 56777876543 34433323333333344444 444366663 345677776655544
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