Psyllid ID: psy2990

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160--
Protein Sequence
MNNKALVVNMHMEVTEMTTTEILNASISPSNMTGLADDMMQGFDYLNISTELPIRYAQPMYGYVMPFLLLITIIANTLIVVVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR
Secondary Structure (PSIPRED)
ccccccEEcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccEEEEccccEEccHHHHEEEEHHccccccccccHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MNNKALVVNMHMEVTEMTTTEILnasispsnmtglADDMMQGFDYLnistelpiryaqpmygyvMPFLLLITIIANTLIVVVLSKRHMRTPTNAVLMAMALSDMFTllfpapwlfymytfgnhykplspvaACYAWNIMNEVIPTLFHTASIWLTLALAVQR
Flexible Loop (DISEMBL)
MNNKALVVNMHMEVTEMTTTEILNASISPSNMTGLADDMMQGFDYLNISTELPIRYAQPMYGYVMPFLLLITIIANTLIVVVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR
Low Complexity Region (SEG)
MNNKALvvnmhmevtemttteILNASISPSNMTGLADDMMQGFDYLNISTELPIRYAQPMYGYVMPFlllitiiantlivvvlSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR
Disordered region (IsUnstruct)
******VVNMHMEVTEMTTTEILNA******MTGLADDMMQGFDYLNISTELPIRYAQPMYGYVMPFLLLITIIANTLIVVVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAV**
Disordered Region (DISOPRED)
*****L**NMHMEVTEMTTTEILNASISPSNMTGLADDMMQGFDYLNISTELPIRYAQPMYGYVMPFLLLITIIANTLIVVVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR
Disordered Region (DISEMBL)
MNNKALVVNMHMEVTEMTTTEILNASISPSNMTGLADDMMQGFDYLNISTELPIRYAQPMYGYVMPFLLLITIIANTLIVVVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR
Disordered Region (DISPRO)
*NNKALVVNMHMEVTEMTTTEILNASISPSNMTGLADDMMQGFDYLNISTELPIRYAQPMYGYVMPFLLLITIIANTLIVVVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNNKALVVNMHMEVTEMTTTEILNASISPSNMTGLADDMMQGFDYLNISTELPIRYAQPMYGYVMPFLLLITIIANTLIVVVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	162	2.2.26 [Sep-21-2011]
Q98980	353	Rhodopsin OS=Petromyzon m	N/A	N/A	0.827	0.379	0.292	0.0004

>sp|Q98980|OPSD_PETMA Rhodopsin OS=Petromyzon marinus GN=RHO PE=1 SV=1

 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 13/147 (8%)

Query: 17  MTTTEILNASISPSNMTGLADDMMQGFDYLNISTELPIRYAQPMYGYVMPFLLLITIIAN 76
           M  TE  N  I  SN TGLA      F+Y       P +Y+  +    M FL+L+    N
Sbjct: 1   MNGTEGENFYIPFSNKTGLARS---PFEYPQYYLAEPWKYS--VLAAYMFFLILVGFPVN 55

Query: 77  TL-IVVVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYA 135
            L + V +  + +RTP N +L+ +A++++F +LF   +   MY+  N Y    P    + 
Sbjct: 56  FLTLFVTVQHKKLRTPLNYILLNLAVANLFMVLF--GFTLTMYSSMNGYFVFGPTMCNF- 112

Query: 136 WNIMNEVIPTLFHTASIWLTLALAVQR 162
                    TL    S+W  + LA++R
Sbjct: 113 ----EGFFATLGGEMSLWSLVVLAIER 135

Visual pigments such as rhodopsin and porphyropsin are light-absorbing molecules that mediate vision. Rhodopsin consists of an apoprotein, opsin, covalently linked to 11-cis-retinal. This receptor is coupled to the activation of phospholipase C. Porphyropsin consists of opsin covalently linked to 11-cis 3,4-didehydroretinal.
Petromyzon marinus (taxid: 7757)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
341575566	398	sex peptide receptor [Bemisia tabaci]	0.858	0.349	0.809	5e-60
193712541	398	PREDICTED: FMRFamide receptor-like [Acyr	0.845	0.344	0.744	9e-58
341575564	399	sex peptide receptor [Lygus hesperus]	0.771	0.313	0.8	4e-54
449143233	421	sex peptide receptor [Spodoptera litura]	0.728	0.280	0.822	1e-52
357624630	423	sex peptide receptor [Danaus plexippus]	0.734	0.281	0.815	1e-52
168823423	406	sex peptide receptor [Bombyx mori] gi|15	0.864	0.344	0.701	1e-52
307006411	424	sex peptide receptor [Helicoverpa armige	0.814	0.311	0.742	2e-52
383793872	424	sex peptide receptor [Helicoverpa assult	0.814	0.311	0.742	2e-52
270004837	388	hypothetical protein TcasGA2_TC002917 [T	0.759	0.317	0.764	2e-50
164698404	391	sex peptide receptor [Tribolium castaneu	0.759	0.314	0.764	2e-50

>gi|341575566|gb|AEK80440.1| sex peptide receptor [Bemisia tabaci]

 Score =  235 bits (599), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 115/142 (80%), Positives = 126/142 (88%), Gaps = 3/142 (2%)

Query: 21  EILNASISPSNMTGLADDMMQGFDYLNISTELPIRYAQPMYGYVMPFLLLITIIANTLIV 80
           E++N S+   N +   +  +   DYLN++ ELPIRYAQPMYGY+MPFLLLITI+ANTLIV
Sbjct: 14  ELVNISMEWENGSWAWNGTL---DYLNVTRELPIRYAQPMYGYMMPFLLLITIVANTLIV 70

Query: 81  VVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMN 140
           VVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPV ACYA+ IMN
Sbjct: 71  VVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVGACYAYTIMN 130

Query: 141 EVIPTLFHTASIWLTLALAVQR 162
           EVIPTLFHTASIWLTLALAVQR
Sbjct: 131 EVIPTLFHTASIWLTLALAVQR 152

Source: Bemisia tabaci

Species: Bemisia tabaci

Genus: Bemisia

Family: Aleyrodidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193712541|ref|XP_001944453.1| PREDICTED: FMRFamide receptor-like [Acyrthosiphon pisum]

 Score =  228 bits (580), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 108/145 (74%), Positives = 124/145 (85%), Gaps = 8/145 (5%)

Query: 26  SISPSNMTGLAD--------DMMQGFDYLNISTELPIRYAQPMYGYVMPFLLLITIIANT 77
           ++ P+ +TGL D        +   G  YLN++TE+P++YA+PMYG+VMPFLLL+TI+ANT
Sbjct: 8   AVVPTYLTGLFDFNGTVEGGNETDGGGYLNVTTEMPVQYARPMYGFVMPFLLLVTIVANT 67

Query: 78  LIVVVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWN 137
           LIVVVLSKRHMRTPTN VLM+MALSDMFTLLFPAPWLFYMYT GNHYKPLSPV +CYAW 
Sbjct: 68  LIVVVLSKRHMRTPTNVVLMSMALSDMFTLLFPAPWLFYMYTLGNHYKPLSPVESCYAWY 127

Query: 138 IMNEVIPTLFHTASIWLTLALAVQR 162
            MNEVIPTLFHTASIWLTLALAVQR
Sbjct: 128 AMNEVIPTLFHTASIWLTLALAVQR 152

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|341575564|gb|AEK80439.1| sex peptide receptor [Lygus hesperus]

 Score =  216 bits (549), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 100/125 (80%), Positives = 113/125 (90%)

Query: 38  DMMQGFDYLNISTELPIRYAQPMYGYVMPFLLLITIIANTLIVVVLSKRHMRTPTNAVLM 97
           ++ +G   +N+++E+ I YA P+YGY MPFLL+ITI+ANTLIVVVLSKRHMRTPTNAVLM
Sbjct: 29  NLGEGERLVNVTSEMDIAYAIPLYGYCMPFLLVITIVANTLIVVVLSKRHMRTPTNAVLM 88

Query: 98  AMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLA 157
           AMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPV ACYAW  MN++IP LFHTASIWLTLA
Sbjct: 89  AMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVGACYAWRAMNDIIPGLFHTASIWLTLA 148

Query: 158 LAVQR 162
           LAVQR
Sbjct: 149 LAVQR 153

Source: Lygus hesperus

Species: Lygus hesperus

Genus: Lygus

Family: Miridae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|449143233|gb|AGE92037.1| sex peptide receptor [Spodoptera litura]

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 97/118 (82%), Positives = 105/118 (88%)

Query: 45  YLNISTELPIRYAQPMYGYVMPFLLLITIIANTLIVVVLSKRHMRTPTNAVLMAMALSDM 104
           YLN++ E PI YA+PMYGY+ PFLL  T +ANTLIVVVLS+RHMRTPTN VLMAMAL DM
Sbjct: 63  YLNVTCEFPINYAEPMYGYIAPFLLATTTVANTLIVVVLSRRHMRTPTNVVLMAMALCDM 122

Query: 105 FTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR 162
           FT+LFPAPWLFYMYTFGNHYKPLSPV AC AWN MNEVIP +FHTASIWLTLALAVQR
Sbjct: 123 FTMLFPAPWLFYMYTFGNHYKPLSPVRACQAWNYMNEVIPAMFHTASIWLTLALAVQR 180

Source: Spodoptera litura

Species: Spodoptera litura

Genus: Spodoptera

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357624630|gb|EHJ75336.1| sex peptide receptor [Danaus plexippus]

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 97/119 (81%), Positives = 106/119 (89%)

Query: 44  DYLNISTELPIRYAQPMYGYVMPFLLLITIIANTLIVVVLSKRHMRTPTNAVLMAMALSD 103
            YLN++ E PI YA+PMYGY+ PFLL  TI+ANTLIVVVLS+RHMRTPTN VLMAMAL D
Sbjct: 65  SYLNVTCEFPISYAEPMYGYIAPFLLATTIVANTLIVVVLSRRHMRTPTNVVLMAMALCD 124

Query: 104 MFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR 162
           MFT+LFPAPWLFYMYTFGNHYKPLSPV AC AW+ MNEVIP +FHTASIWLTLALAVQR
Sbjct: 125 MFTMLFPAPWLFYMYTFGNHYKPLSPVHACQAWHYMNEVIPAMFHTASIWLTLALAVQR 183

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|168823423|ref|NP_001108346.1| sex peptide receptor [Bombyx mori] gi|158991495|gb|ABW86946.1| sex peptide receptor [Bombyx mori]

 Score =  210 bits (535), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 101/144 (70%), Positives = 114/144 (79%), Gaps = 4/144 (2%)

Query: 23  LNASISPSNMTGLADDMMQGFD----YLNISTELPIRYAQPMYGYVMPFLLLITIIANTL 78
           +N +I+  + T    D     +    YLN++ E  I YA+PMYGY+ PFLL  T +ANTL
Sbjct: 22  INENITYFDYTNFTSDDFCASNNSHVYLNVTCEFAISYAEPMYGYIAPFLLATTTVANTL 81

Query: 79  IVVVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNI 138
           IVVVLS+RHMRTPTNAVLMAMAL DMFT+LFPAPWLFYMYTFGNHYKPLSPV AC AWN 
Sbjct: 82  IVVVLSRRHMRTPTNAVLMAMALCDMFTMLFPAPWLFYMYTFGNHYKPLSPVRACQAWNY 141

Query: 139 MNEVIPTLFHTASIWLTLALAVQR 162
           MNEVIP +FHTASIWLTLALAVQR
Sbjct: 142 MNEVIPAMFHTASIWLTLALAVQR 165

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307006411|gb|ADK79103.2| sex peptide receptor [Helicoverpa armigera]

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 101/136 (74%), Positives = 111/136 (81%), Gaps = 4/136 (2%)

Query: 30  SNMTGLADDMM---QGFDYLNISTELPIRYAQPMYGYVMPFLLLITIIANTLIVVVLSKR 86
           SN +  ADD         YLN++ E P+ YA+PMYGY+ PFLL  T +ANTLIVVVLS+R
Sbjct: 49  SNFSA-ADDFCTSNHSHFYLNVTCEFPVDYAEPMYGYIAPFLLATTTVANTLIVVVLSRR 107

Query: 87  HMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTL 146
           HMRTPTN VLMAMAL DMFT+LFPAPWLFYMYTFGNHYKPLSPV AC AWN MNEVIP +
Sbjct: 108 HMRTPTNVVLMAMALCDMFTMLFPAPWLFYMYTFGNHYKPLSPVRACQAWNYMNEVIPAM 167

Query: 147 FHTASIWLTLALAVQR 162
           FHTASIWLTLALAVQR
Sbjct: 168 FHTASIWLTLALAVQR 183

Source: Helicoverpa armigera

Species: Helicoverpa armigera

Genus: Helicoverpa

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383793872|gb|AFH53182.1| sex peptide receptor [Helicoverpa assulta]

 Score =  209 bits (533), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 101/136 (74%), Positives = 110/136 (80%), Gaps = 4/136 (2%)

Query: 30  SNMTGLADDMM---QGFDYLNISTELPIRYAQPMYGYVMPFLLLITIIANTLIVVVLSKR 86
           SN +  ADD         YLN++ E P+ YA+PMYGY+ PFLL  T +ANTLIVVVLSKR
Sbjct: 49  SNFSA-ADDFCTSNHSHFYLNVTCEFPVNYAEPMYGYIAPFLLATTTVANTLIVVVLSKR 107

Query: 87  HMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTL 146
           HMR PTN VLMAMAL DMFT+LFPAPWLFYMYTFGNHYKPLSPV AC AWN MNEVIP +
Sbjct: 108 HMRAPTNVVLMAMALCDMFTMLFPAPWLFYMYTFGNHYKPLSPVRACQAWNYMNEVIPAM 167

Query: 147 FHTASIWLTLALAVQR 162
           FHTASIWLTLALAVQR
Sbjct: 168 FHTASIWLTLALAVQR 183

Source: Helicoverpa assulta

Species: Helicoverpa assulta

Genus: Helicoverpa

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270004837|gb|EFA01285.1| hypothetical protein TcasGA2_TC002917 [Tribolium castaneum]

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 94/123 (76%), Positives = 108/123 (87%)

Query: 40  MQGFDYLNISTELPIRYAQPMYGYVMPFLLLITIIANTLIVVVLSKRHMRTPTNAVLMAM 99
           ++   Y+NI+ E+PI YA P+YGYVMPFLL+ITIIANTLIVVVLSKR MRTPTN VLMAM
Sbjct: 25  VEKVQYINITMEMPIAYAVPLYGYVMPFLLIITIIANTLIVVVLSKRQMRTPTNVVLMAM 84

Query: 100 ALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALA 159
           AL DMFT+L PAPWL YMY+FGNHYKPL P++ CYAW +M+EVIP +FHTASIWLTLALA
Sbjct: 85  ALCDMFTVLIPAPWLIYMYSFGNHYKPLWPISLCYAWFVMHEVIPNMFHTASIWLTLALA 144

Query: 160 VQR 162
           VQR
Sbjct: 145 VQR 147

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|164698404|ref|NP_001106940.1| sex peptide receptor [Tribolium castaneum] gi|158991497|gb|ABW86947.1| sex peptide receptor [Tribolium castaneum] gi|184161657|gb|ACC68841.1| G-protein coupled receptor [Tribolium castaneum]

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 94/123 (76%), Positives = 108/123 (87%)

Query: 40  MQGFDYLNISTELPIRYAQPMYGYVMPFLLLITIIANTLIVVVLSKRHMRTPTNAVLMAM 99
           ++   Y+NI+ E+PI YA P+YGYVMPFLL+ITIIANTLIVVVLSKR MRTPTN VLMAM
Sbjct: 28  VEKVQYINITMEMPIAYAVPLYGYVMPFLLIITIIANTLIVVVLSKRQMRTPTNVVLMAM 87

Query: 100 ALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALA 159
           AL DMFT+L PAPWL YMY+FGNHYKPL P++ CYAW +M+EVIP +FHTASIWLTLALA
Sbjct: 88  ALCDMFTVLIPAPWLIYMYSFGNHYKPLWPISLCYAWFVMHEVIPNMFHTASIWLTLALA 147

Query: 160 VQR 162
           VQR
Sbjct: 148 VQR 150

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
FB|FBgn0029768	435	SPR "Sex peptide receptor" [Dr	0.728	0.271	0.550	2.5e-33
WB|WBGene00010986	527	sprr-1 [Caenorhabditis elegans	0.709	0.218	0.381	6.7e-17
WB|WBGene00009629	451	sprr-2 [Caenorhabditis elegans	0.629	0.226	0.323	1.3e-11
FB|FBgn0264002	488	DmsR-2 "Dromyosuppressin recep	0.487	0.161	0.35	4e-07
FB|FBgn0035331	478	DmsR-1 "Dromyosuppressin recep	0.635	0.215	0.288	8.1e-07
FB|FBgn0033579	414	CG13229 [Drosophila melanogast	0.777	0.304	0.303	2.1e-05
WB|WBGene00022086	465	sprr-3 [Caenorhabditis elegans	0.648	0.225	0.219	8.8e-05
UNIPROTKB|E1BWP2	404	NMUR1 "Uncharacterized protein	0.438	0.175	0.363	0.00041
UNIPROTKB|F1MY53	423	NMUR1 "Uncharacterized protein	0.438	0.167	0.350	0.00043

FB|FBgn0029768 SPR "Sex peptide receptor" [Drosophila melanogaster (taxid:7227)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 65/118 (55%), Positives = 82/118 (69%)

Query:    45 YLNISTELPIRYAQPMYGYVMPFXXXXXXXXXXXXXXXXSKRHMRTPTNAVLMAMALSDM 104
             Y N++ + P+ YA P+YGY MPF                SK+ M TPTN VLM MA+ DM
Sbjct:    76 YWNLTCDSPLEYAMPLYGYCMPFLLIITIISNSLIVLVLSKKSMATPTNFVLMGMAICDM 135

Query:   105 FTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR 162
              T++FPAP L+YMYTFGNHYKPL PV+ C A++I NE++P + HT S+WLTLALAVQR
Sbjct:   136 LTVIFPAPGLWYMYTFGNHYKPLHPVSMCLAYSIFNEIMPAMCHTISVWLTLALAVQR 193

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0048042 "regulation of post-mating oviposition" evidence=IMP

GO:0008188 "neuropeptide receptor activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0045434 "negative regulation of female receptivity, post-mating" evidence=IMP

WB|WBGene00010986 sprr-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 216 (81.1 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 45/118 (38%), Positives = 64/118 (54%)

Query:    48 ISTELPIRYAQPMYGYVMPFXXXXXXXXXXXXXXXXSKRHMRTPTNAVLMAMALSDMFTL 107
             I   +P+ +A PMYGY+MPF                S +++RTPTN VL+AMA++++ T 
Sbjct:    19 IGIMVPVDWAVPMYGYMMPFIVTLTVATNSFIVVVLSHKYLRTPTNYVLLAMAVTELLTG 78

Query:   108 LFPAPWLFYMYTFGNHYKPLS---PVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR 162
             L   PW  Y YT   +   L    P   C     M   +P++FHT +IWLT+ LA+QR
Sbjct:    79 LSCLPWFTYYYTLSGYKNDLQTGLPSFWCDMIPYMAAFLPSIFHTMAIWLTVYLAIQR 136

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00009629 sprr-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 166 (63.5 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 34/105 (32%), Positives = 50/105 (47%)

Query:    60 MYGYVMPFXXXXXXXXXXXXXXXXSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYT 119
             +YG + P                 SK+HM TPTN VL  MA++++   L P PW  + ++
Sbjct:    60 VYGQIFPILVLFAVFANAAVALVLSKKHMITPTNVVLKYMAIAELLVGLVPLPWTLFFFS 119

Query:   120 FGNHYKPLSPVAA--CYAWNIMNEVIPTLFHTASIWLTLALAVQR 162
              GN  K    +    CY      +  P +FH  ++WLT+ LA QR
Sbjct:   120 MGN-IKETHRLELWWCYLQKYSMDAFPPVFHMIAMWLTVLLAAQR 163

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0264002 DmsR-2 "Dromyosuppressin receptor 2" [Drosophila melanogaster (taxid:7227)]

 Score = 125 (49.1 bits), Expect = 4.0e-07, P = 4.0e-07
 Identities = 28/80 (35%), Positives = 45/80 (56%)

Query:    84 SKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNI-MNEV 142
             ++R MR+PTNA+L  +A++D+  +L   P+  + Y           ++  +A  I  + V
Sbjct:    49 TRREMRSPTNAILTGLAVADLAVMLEYIPYTVHDYILSARLPREEQLSYSWACFIKFHSV 108

Query:   143 IPTLFHTASIWLTLALAVQR 162
              P + HT SIWLT+ LAV R
Sbjct:   109 FPQVLHTISIWLTVTLAVWR 128

GO:0004930 "G-protein coupled receptor activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0008188 "neuropeptide receptor activity" evidence=ISS;IDA

GO:0035013 "myosuppressin receptor activity" evidence=IDA;NAS

GO:0045932 "negative regulation of muscle contraction" evidence=NAS

FB|FBgn0035331 DmsR-1 "Dromyosuppressin receptor 1" [Drosophila melanogaster (taxid:7227)]

 Score = 122 (48.0 bits), Expect = 8.1e-07, P = 8.1e-07
 Identities = 30/104 (28%), Positives = 50/104 (48%)

Query:    60 MYGYVMPFXXXXXXXXXXXXXXXXSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYT 119
             M+GYV                   ++R MR+PTNA+L  +A++D+  +L   P+  + Y 
Sbjct:    27 MHGYVSLVVCILGTIANTLNIIVLTRREMRSPTNAILTGLAVADLAVMLEYIPYTIHDYI 86

Query:   120 FGNHYKPLSPVAACYAWNI-MNEVIPTLFHTASIWLTLALAVQR 162
               +       ++  +A  I  + +   + HT SIWLT+ LAV R
Sbjct:    87 LTDSLPREEKLSYSWACFIKFHSIFAQVLHTISIWLTVTLAVWR 130

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0004930 "G-protein coupled receptor activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0008188 "neuropeptide receptor activity" evidence=ISS;IDA

GO:0045932 "negative regulation of muscle contraction" evidence=NAS

GO:0035013 "myosuppressin receptor activity" evidence=IDA;NAS

FB|FBgn0033579 CG13229 [Drosophila melanogaster (taxid:7227)]

 Score = 108 (43.1 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 41/135 (30%), Positives = 61/135 (45%)

Query:    31 NMTGLADDMMQGFDYLNISTELPIRYAQPMYGYVMPFXXXXXXXXXXXXXXXXSKRHM-R 89
             NMT   D+  QG+    I   L  R    ++GYV                   +++ M +
Sbjct:    49 NMTPQVDEC-QGYCQGEIYNWL--RAYNSIHGYVSLMICIFGTIANILNIMVLTRKEMAK 105

Query:    90 TPTNAVLMAMALSDMFTLLFPAPWLFYMYTF-GNHYKPLSPV-AACYAWNIMNEVIPTLF 147
             TP N +L  +A++DMF +L   P+  Y Y + G   K LS   A C    +++     + 
Sbjct:   106 TPINNILKWLAVADMFVMLEYIPYTSYQYIYMGPGEKDLSYTWAVCL---LVHMHFTQIL 162

Query:   148 HTASIWLTLALAVQR 162
             HT SI LT+ LAV R
Sbjct:   163 HTISIGLTVTLAVWR 177

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0004930 "G-protein coupled receptor activity" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0008188 "neuropeptide receptor activity" evidence=ISS

WB|WBGene00022086 sprr-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 103 (41.3 bits), Expect = 8.8e-05, P = 8.8e-05
 Identities = 23/105 (21%), Positives = 43/105 (40%)

Query:    58 QPMYGYVMPFXXXXXXXXXXXXXXXXSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYM 117
             Q +YG ++P                 S++  +  +   L+ MA+  +   + P P+  Y 
Sbjct:    51 QIIYGIILPVLAVLVVVSNSVVILVLSQQKSKRASVEPLLWMAICSLLMAISPLPFTIYY 110

Query:   118 YTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR 162
             Y   +H      +  CY   +  E++P  F+   +  T+ L VQR
Sbjct:   111 YNLSHHLDFNQTLFLCYLQKVCMEIMPFFFNNLVLLFTILLGVQR 155

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1BWP2 NMUR1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 96 (38.9 bits), Expect = 0.00041, P = 0.00041
 Identities = 28/77 (36%), Positives = 40/77 (51%)

Query:    86 RHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPT 145
             R MRTPTN  L ++A+SD+  LL   P    +Y   ++Y  L     CY   ++ E +  
Sbjct:    72 RFMRTPTNYYLFSLAVSDLLVLLLGMP--LELYDMWSNYPFLLGAGGCYFKTLLFEAV-- 127

Query:   146 LFHTASIWLTLALAVQR 162
              F  ASI    AL+V+R
Sbjct:   128 CF--ASILNVTALSVER 142

GO:0001607 "neuromedin U receptor activity" evidence=IEA

GO:0006816 "calcium ion transport" evidence=IEA

GO:0006821 "chloride transport" evidence=IEA

GO:0006939 "smooth muscle contraction" evidence=IEA

GO:0007200 "phospholipase C-activating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007202 "activation of phospholipase C activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019722 "calcium-mediated signaling" evidence=IEA

GO:0048016 "inositol phosphate-mediated signaling" evidence=IEA

UNIPROTKB|F1MY53 NMUR1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 96 (38.9 bits), Expect = 0.00043, P = 0.00043
 Identities = 27/77 (35%), Positives = 39/77 (50%)

Query:    86 RHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPT 145
             R MRTPTN  L ++A+SD+  LL   P    +Y   N+Y  L     CY   ++ E +  
Sbjct:    88 RAMRTPTNYYLFSLAVSDLLVLLVGLP--LELYEMQNNYPFLLGAGGCYFRTLLFETVCL 145

Query:   146 LFHTASIWLTLALAVQR 162
                 AS+    AL+V+R
Sbjct:   146 ----ASVLNVTALSVER 158


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.135   0.430    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      162       131   0.00091  102 3  11 22  0.46    30
                                                     29  0.42    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  580 (62 KB)
  Total size of DFA:  143 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  11.32u 0.09s 11.41t   Elapsed:  00:00:30
  Total cpu time:  11.32u 0.09s 11.41t   Elapsed:  00:00:31
  Start:  Thu Aug 15 12:27:38 2013   End:  Thu Aug 15 12:28:09 2013

GO:0048016 "inositol phosphate-mediated signaling" evidence=IEA

GO:0019722 "calcium-mediated signaling" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007202 "activation of phospholipase C activity" evidence=IEA

GO:0007200 "phospholipase C-activating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0006939 "smooth muscle contraction" evidence=IEA

GO:0006821 "chloride transport" evidence=IEA

GO:0006816 "calcium ion transport" evidence=IEA

GO:0001607 "neuromedin U receptor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	162
pfam10324	317	pfam10324, 7TM_GPCR_Srw, Serpentine type 7TM GPCR	6e-05

>gnl|CDD|220692 pfam10324, 7TM_GPCR_Srw, Serpentine type 7TM GPCR chemoreceptor Srw

 Score = 41.4 bits (98), Expect = 6e-05
 Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 13/105 (12%)

Query: 66  PFLLLITIIANTLIVVVLSKRHMRT-PTNAVLMAMALSDMFTLLFP----APWLFYMYTF 120
             L +I  I N   +++L+++ MRT   N +++ +A+ D+ T+L       P     Y  
Sbjct: 4   FILSIIGFIINIFHLIILTRKSMRTSSINIIMIGIAICDIITMLLTIYNFIPEFIISYEN 63

Query: 121 GNHYKPLSPVAACYAWNIMN---EVIPTLFHTASIWLTLALAVQR 162
                P S     Y   +++   E +  +    S WL + +A+ R
Sbjct: 64  SECIPPDS-----YLKVLLDWILESLQDISRRCSTWLGVFMALIR 103

Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type. Srw is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf'. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz. Length = 317

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	162
KOG4219|consensus	423		99.81
PHA03234	338	DNA packaging protein UL33; Provisional	99.77
PHA02834	323	chemokine receptor-like protein; Provisional	99.67
KOG4220|consensus	503		99.64
PHA02638	417	CC chemokine receptor-like protein; Provisional	99.61
PHA03235	409	DNA packaging protein UL33; Provisional	99.58
PHA03087	335	G protein-coupled chemokine receptor-like protein;	99.56
PF00001	257	7tm_1: 7 transmembrane receptor (rhodopsin family)	99.34
KOG2087|consensus	363		98.87
PF10320	257	7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep	98.83
PF10324	318	7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept	98.29
PF05296	303	TAS2R: Mammalian taste receptor protein (TAS2R); I	97.4
PF05462	303	Dicty_CAR: Slime mold cyclic AMP receptor	97.31
PF11710	201	Git3: G protein-coupled glucose receptor regulatin	97.16
PF10328	274	7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept	97.08
PF03402	265	V1R: Vomeronasal organ pheromone receptor family,	96.79
PF10321	313	7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept	96.19
PF10317	292	7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept	89.82
PF10316	273	7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemorecep	89.12
PF00002	242	7tm_2: 7 transmembrane receptor (Secretin family);	87.53
PF10292	324	7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c	85.6
PF10323	283	7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept	81.61

>KOG4219|consensus

Probab=99.81  E-value=7.5e-20  Score=145.61  Aligned_cols=100  Identities=21%  Similarity=0.348  Sum_probs=92.3

Q ss_pred             hhhhHHHHHHHHHHHHHHhhhhheehh-eecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccchh
Q psy2990          56 YAQPMYGYVMPFLLLITIIANTLIVVV-LSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACY  134 (162)
Q Consensus        56 ~~~~~~~~~~~~i~~~gi~gN~~vl~v-~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~  134 (162)
                      +.+.+++++|..+.+++++||++|+|| +.+|++|+.+|+|+.|||+||+..+++..|+...+...+  .|++ |...|+
T Consensus        33 ~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~--~W~~-G~f~C~  109 (423)
T KOG4219|consen   33 WQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQ--EWYF-GSFYCR  109 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh--cccc-ccceee
Confidence            334588999999999999999999986 699999999999999999999999999999998877666  8866 999999


Q ss_pred             hhhhHhhhhhhHHHHHHHHHHhhhhccC
Q psy2990         135 AWNIMNEVIPTLFHTASIWLTLALAVQR  162 (162)
Q Consensus       135 ~~~~~~~~~~~~~~~~s~~~l~~isidR  162 (162)
                      +..|+.    .....+|+++|+|||+||
T Consensus       110 f~nf~~----itav~vSVfTlvAiA~DR  133 (423)
T KOG4219|consen  110 FVNFFP----ITAVFVSVFTLVAIAIDR  133 (423)
T ss_pred             eccccc----hhhhhHhHHHHHHHHHHH
Confidence            999988    999999999999999998

>PHA03234 DNA packaging protein UL33; Provisional

Probab=99.77  E-value=1.4e-18  Score=139.14  Aligned_cols=97  Identities=18%  Similarity=0.145  Sum_probs=82.0

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhheeh--h-eecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccch
Q psy2990          57 AQPMYGYVMPFLLLITIIANTLIVV--V-LSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAAC  133 (162)
Q Consensus        57 ~~~~~~~~~~~i~~~gi~gN~~vl~--v-~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C  133 (162)
                      .+....++|.+++++|++||++|++  + .+++++|+++|+|+.|||+||++.++ .+|...... .+  .|++ |+..|
T Consensus        31 ~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l-~lp~~~~~~-~~--~w~f-G~~lC  105 (338)
T PHA03234         31 AQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHML-CVFFLTLNR-EA--LFNF-NQAFC  105 (338)
T ss_pred             HHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH-HHHHHHHHH-hC--CccC-chhHH
Confidence            3457788999999999999999996  3 35567799999999999999999987 556555432 23  6855 99999


Q ss_pred             hhhhhHhhhhhhHHHHHHHHHHhhhhccC
Q psy2990         134 YAWNIMNEVIPTLFHTASIWLTLALAVQR  162 (162)
Q Consensus       134 ~~~~~~~~~~~~~~~~~s~~~l~~isidR  162 (162)
                      |+..++.    ....++|+++|++||+||
T Consensus       106 k~~~~~~----~~~~~~Si~~L~~ISiDR  130 (338)
T PHA03234        106 QCVLFIY----HASCSYSICMLAIIATIR  130 (338)
T ss_pred             HHHHHHH----HHHHHHHHHHHHHHHHHh
Confidence            9999998    999999999999999999

>PHA02834 chemokine receptor-like protein; Provisional

Probab=99.67  E-value=2.3e-16  Score=125.44  Aligned_cols=95  Identities=15%  Similarity=0.232  Sum_probs=78.3

Q ss_pred             hHHHHHHHHHHHHHHhhhhheehheecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccchhhhhh
Q psy2990          59 PMYGYVMPFLLLITIIANTLIVVVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNI  138 (162)
Q Consensus        59 ~~~~~~~~~i~~~gi~gN~~vl~v~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~  138 (162)
                      .+..+++.+++++|++||+++++++.+|+.++++|+|+.|||++|++. .+.+|+.+.. ..+  .|.+ |+..|++..+
T Consensus        29 ~~~~~~~~li~v~~~~gN~lVi~vi~~~~~~~~~n~~i~nLAiaDll~-~~~lP~~i~~-~~~--~w~~-g~~~C~~~~~  103 (323)
T PHA02834         29 YFVIVFYILLFIFGLIGNVLVIAVLIVKRFMFVVDVYLFNIAMSDLML-VFSFPFIIHN-DLN--EWIF-GEFMCKLVLG  103 (323)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHhccccchhhhhhHHHHHHHHHH-HHHHHHHHHH-HcC--CcCC-cchHHHhHHH
Confidence            367789999999999999999876444445567899999999999986 5588987653 333  5755 9999999998


Q ss_pred             HhhhhhhHHHHHHHHHHhhhhccC
Q psy2990         139 MNEVIPTLFHTASIWLTLALAVQR  162 (162)
Q Consensus       139 ~~~~~~~~~~~~s~~~l~~isidR  162 (162)
                      +.    ..+..+|++++++||+||
T Consensus       104 ~~----~~~~~~Si~tL~~IsidR  123 (323)
T PHA02834        104 VY----FVGFFSNMFFVTLISIDR  123 (323)
T ss_pred             HH----HHHHHHHHHHHHHHHHHH
Confidence            87    788889999999999999

>KOG4220|consensus

Probab=99.64  E-value=1.4e-16  Score=127.43  Aligned_cols=97  Identities=24%  Similarity=0.353  Sum_probs=90.3

Q ss_pred             hHHHHHHHHHHHHHHhhhhheehh-eecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccchhhhh
Q psy2990          59 PMYGYVMPFLLLITIIANTLIVVV-LSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWN  137 (162)
Q Consensus        59 ~~~~~~~~~i~~~gi~gN~~vl~v-~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~  137 (162)
                      ..+.++-..+.++.++||++|++- -.+|+|++..|+|+.+||+|||+.+.+.+|+...+...+  +|++ |...|.++-
T Consensus        31 v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg--~W~L-G~~~CdlWL  107 (503)
T KOG4220|consen   31 VFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMG--YWPL-GPLVCDLWL  107 (503)
T ss_pred             EeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHc--cccc-chHHHHHHH
Confidence            356678889999999999999964 578999999999999999999999999999999989999  9988 999999999


Q ss_pred             hHhhhhhhHHHHHHHHHHhhhhccC
Q psy2990         138 IMNEVIPTLFHTASIWLTLALAVQR  162 (162)
Q Consensus       138 ~~~~~~~~~~~~~s~~~l~~isidR  162 (162)
                      .+.    ++...+|++.|..||+||
T Consensus       108 alD----YvaSNASVmNLLiISFDR  128 (503)
T KOG4220|consen  108 ALD----YVASNASVMNLLIISFDR  128 (503)
T ss_pred             HHH----HHhhhhhhhhhheeeeec
Confidence            999    999999999999999999

>PHA02638 CC chemokine receptor-like protein; Provisional

Probab=99.61  E-value=2e-15  Score=123.98  Aligned_cols=95  Identities=15%  Similarity=0.307  Sum_probs=82.5

Q ss_pred             hHHHHHHHHHHHHHHhhhhheehheecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccchhhhhh
Q psy2990          59 PMYGYVMPFLLLITIIANTLIVVVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNI  138 (162)
Q Consensus        59 ~~~~~~~~~i~~~gi~gN~~vl~v~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~  138 (162)
                      .....++.+++++|++||+++++++++|++|+++|+++.|||++|++.++ .+|+.+... .+  .|.+ |+..|++..+
T Consensus        99 ~~l~~~y~lvfvlgliGN~LVl~il~~k~lrt~t~i~llnLAisDLl~~l-~lPf~i~~~-~~--~W~f-g~~~Ck~~~~  173 (417)
T PHA02638         99 EYIKIFYIIIFILGLFGNAAIIMILFCKKIKTITDIYIFNLAISDLIFVI-DFPFIIYNE-FD--QWIF-GDFMCKVISA  173 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHHHHH-HHHHHHHHH-hc--cccc-cccchhhHHH
Confidence            36677899999999999999997766788999999999999999999865 889877643 33  7755 9999999988


Q ss_pred             HhhhhhhHHHHHHHHHHhhhhccC
Q psy2990         139 MNEVIPTLFHTASIWLTLALAVQR  162 (162)
Q Consensus       139 ~~~~~~~~~~~~s~~~l~~isidR  162 (162)
                      +.    ..+.++|++++++|++||
T Consensus       174 l~----~~~~~~Si~~L~~isiDR  193 (417)
T PHA02638        174 SY----YIGFFSNMFLITLMSIDR  193 (417)
T ss_pred             HH----HHHHHHHHHHHHHHHHHH
Confidence            88    888999999999999999

>PHA03235 DNA packaging protein UL33; Provisional

Probab=99.58  E-value=1.1e-14  Score=119.36  Aligned_cols=96  Identities=17%  Similarity=0.235  Sum_probs=76.2

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhheehh-ee-cCC-CCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCcccc-ccccc
Q psy2990          57 AQPMYGYVMPFLLLITIIANTLIVVV-LS-KRH-MRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPL-SPVAA  132 (162)
Q Consensus        57 ~~~~~~~~~~~i~~~gi~gN~~vl~v-~~-~~~-l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~-~~~~~  132 (162)
                      ...+..+++.+++++|++||++++++ ++ +|+ .++.+++|+.|||++|++.. +.+|+.+..   .  .|.+ .|...
T Consensus        31 ~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~l-~~lP~~i~~---~--~~~~~~g~~~  104 (409)
T PHA03235         31 ARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLTV-FVLPFIMLS---N--QGLLSGSVAG  104 (409)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHHH-HHHHHHHHh---c--CccccCCCCe
Confidence            33578889999999999999999964 43 332 34567899999999999874 588877652   2  3433 25689


Q ss_pred             hhhhhhHhhhhhhHHHHHHHHHHhhhhccC
Q psy2990         133 CYAWNIMNEVIPTLFHTASIWLTLALAVQR  162 (162)
Q Consensus       133 C~~~~~~~~~~~~~~~~~s~~~l~~isidR  162 (162)
                      |++..++.    ..++.+|+++|++||+||
T Consensus       105 Ck~~~~l~----~~~~~~Si~tL~~ISiDR  130 (409)
T PHA03235        105 CKFASLLY----YASCTVGFATVALIAADR  130 (409)
T ss_pred             ehhHHHHH----HHHHHHHHHHHHHHHHHH
Confidence            99999988    889999999999999999

>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional

Probab=99.56  E-value=2.8e-14  Score=113.63  Aligned_cols=96  Identities=20%  Similarity=0.362  Sum_probs=80.3

Q ss_pred             hHHHHHHHHHHHHHHhhhhheehheecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccchhhhhh
Q psy2990          59 PMYGYVMPFLLLITIIANTLIVVVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNI  138 (162)
Q Consensus        59 ~~~~~~~~~i~~~gi~gN~~vl~v~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~  138 (162)
                      .+...++.+++++|++||++++++..++++|++.|+++.|||++|++.++ ..|........+  .|.+ ++..|+...+
T Consensus        41 ~~~~~~~~~i~~~gl~gN~lvl~~~~~~~~~~~~~~ll~~laisDll~~~-~~~~~~~~~~~~--~~~~-~~~~C~~~~~  116 (335)
T PHA03087         41 TILIVVYSTIFFFGLVGNIIVIYVLTKTKIKTPMDIYLLNLAVSDLLFVM-TLPFQIYYYILF--QWSF-GEFACKIVSG  116 (335)
T ss_pred             hHHHHHHHHHHHHHHHhhHhEEeeehhccccCchHHHHHHHHHHHHHHHH-hHHHHHHHHhCC--CCCC-CcHHHHHHHH
Confidence            47778899999999999999997654449999999999999999998776 566665433333  6655 8899999999


Q ss_pred             HhhhhhhHHHHHHHHHHhhhhccC
Q psy2990         139 MNEVIPTLFHTASIWLTLALAVQR  162 (162)
Q Consensus       139 ~~~~~~~~~~~~s~~~l~~isidR  162 (162)
                      +.    .....+|++++++||+||
T Consensus       117 ~~----~~~~~~S~~~l~~iaidR  136 (335)
T PHA03087        117 LY----YIGFYNSMNFITVMSVDR  136 (335)
T ss_pred             HH----HHHHHHHHHHHHHHHHHH
Confidence            88    888899999999999998

>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.34  E-value=1.3e-12  Score=98.07  Aligned_cols=81  Identities=25%  Similarity=0.507  Sum_probs=70.1

Q ss_pred             hhhheeh-heecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccchhhhhhHhhhhhhHHHHHHHH
Q psy2990          75 ANTLIVV-VLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIW  153 (162)
Q Consensus        75 gN~~vl~-v~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~s~~  153 (162)
                      ||+++++ +.++|++|++.++++.|||++|++.++...|........+  .|.+ +...|++..++.    .....+|.+
T Consensus         1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~--~~~~-~~~~C~~~~~~~----~~~~~~s~~   73 (257)
T PF00001_consen    1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFD--DWIF-SSFLCRIFGFLF----YFSSFSSIF   73 (257)
T ss_dssp             HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHS--SCTS-HHHHHHHHHHHH----HHHHHHHHH
T ss_pred             CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccccc--cccc-cccccccccccc----ccccccccc
Confidence            8999985 4688999999999999999999999998888777655443  6655 889999999888    899999999


Q ss_pred             HHhhhhccC
Q psy2990         154 LTLALAVQR  162 (162)
Q Consensus       154 ~l~~isidR  162 (162)
                      +++++|+||
T Consensus        74 ~~~~is~dR   82 (257)
T PF00001_consen   74 SLVAISIDR   82 (257)
T ss_dssp             HHHHHHHHH
T ss_pred             ccccccccc
Confidence            999999998

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....

>KOG2087|consensus

Probab=98.87  E-value=1.8e-09  Score=85.74  Aligned_cols=99  Identities=11%  Similarity=0.151  Sum_probs=77.3

Q ss_pred             hHHHHHHHHHHHHHHhhhhheehh-eecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCC-----ccccccccc
Q psy2990          59 PMYGYVMPFLLLITIIANTLIVVV-LSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNH-----YKPLSPVAA  132 (162)
Q Consensus        59 ~~~~~~~~~i~~~gi~gN~~vl~v-~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~-----~~~~~~~~~  132 (162)
                      .++.+...++.++++.||.+|++. ...|...++..++++|||.+|++.++...-...++....++     .||- ....
T Consensus        25 ~~lRi~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~-tg~g  103 (363)
T KOG2087|consen   25 WILRISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQ-TGLG  103 (363)
T ss_pred             ceeeehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhh-hcCC
Confidence            355556779999999999999965 55566667999999999999999988655555443332221     2323 6779


Q ss_pred             hhhhhhHhhhhhhHHHHHHHHHHhhhhccC
Q psy2990         133 CYAWNIMNEVIPTLFHTASIWLTLALAVQR  162 (162)
Q Consensus       133 C~~~~~~~~~~~~~~~~~s~~~l~~isidR  162 (162)
                      |+..+|+.    .+..-.|++.|+.+++||
T Consensus       104 C~~aGfla----vFASElSv~~LT~itlEr  129 (363)
T KOG2087|consen  104 CPVAGFLA----VFASELSVFLLTLITLER  129 (363)
T ss_pred             CchHHHHH----HHHHHHHHHHHHHHHHHH
Confidence            99999998    999999999999999998

>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.83  E-value=2.1e-09  Score=83.15  Aligned_cols=84  Identities=21%  Similarity=0.545  Sum_probs=69.1

Q ss_pred             HHHHhhhhhee-hheecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccchhhhhhHhhhhhhHHH
Q psy2990          70 LITIIANTLIV-VVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFH  148 (162)
Q Consensus        70 ~~gi~gN~~vl-~v~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~  148 (162)
                      ++|++||..++ +++++|++|+|.+++++.+|++|++.+...+|.....  .++..+   ....|-.+.+..    .++.
T Consensus         2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~--~~~~~i---~~~~Cf~~~~~~----~f~~   72 (257)
T PF10320_consen    2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFL--FRDHQI---TRSECFWQIFFY----IFFQ   72 (257)
T ss_pred             EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHH--Hhheec---cHHHHHHHHHHH----HHHH
Confidence            56899999888 5689999999999999999999999999888876642  232233   667888877776    7788


Q ss_pred             HHHHHHHhhhhccC
Q psy2990         149 TASIWLTLALAVQR  162 (162)
Q Consensus       149 ~~s~~~l~~isidR  162 (162)
                      .++...+.+|++||
T Consensus        73 ~~qs~~~l~i~iDr   86 (257)
T PF10320_consen   73 CAQSVIMLAIAIDR   86 (257)
T ss_pred             HHHHHHHHHHHhhh
Confidence            88899999999998

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.29  E-value=1.3e-06  Score=69.11  Aligned_cols=95  Identities=22%  Similarity=0.470  Sum_probs=69.2

Q ss_pred             HHHHHHHhhhhheehheecCCCCC-hhHHHHHHHHHHHHHHHHhhhhHHHHHHHhc---CCccccccccchhhhhhHhhh
Q psy2990          67 FLLLITIIANTLIVVVLSKRHMRT-PTNAVLMAMALSDMFTLLFPAPWLFYMYTFG---NHYKPLSPVAACYAWNIMNEV  142 (162)
Q Consensus        67 ~i~~~gi~gN~~vl~v~~~~~l~~-~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~---~~~~~~~~~~~C~~~~~~~~~  142 (162)
                      ++.++|+++|.+.+.|+.+|.+|+ +.|.++..+|++|++..+...+.........   +..++. ..........+..+
T Consensus         5 ~~~~~g~~~N~~h~~VLtrk~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~-~sy~~~~~~~~~~~   83 (318)
T PF10324_consen    5 ILSIFGLFINIFHLIVLTRKSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPP-YSYFWAYFKLIMES   83 (318)
T ss_pred             EEeHHHHHHHHHHhhhcCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCc-ccHHHHHHHHHHHH
Confidence            456789999999999999999997 8999999999999999998888777544332   111211 11122222223344


Q ss_pred             hhhHHHHHHHHHHhhhhccC
Q psy2990         143 IPTLFHTASIWLTLALAVQR  162 (162)
Q Consensus       143 ~~~~~~~~s~~~l~~isidR  162 (162)
                      +...+.-.|.|.-+++|+.|
T Consensus        84 l~~~~~~~S~WL~V~mA~iR  103 (318)
T PF10324_consen   84 LSDIFRRISIWLGVLMALIR  103 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            45778899999999999877

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].

>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs)

Probab=97.40  E-value=0.0014  Score=52.02  Aligned_cols=94  Identities=19%  Similarity=0.309  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHHhhhhheehh----eecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccchhh
Q psy2990          60 MYGYVMPFLLLITIIANTLIVVV----LSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYA  135 (162)
Q Consensus        60 ~~~~~~~~i~~~gi~gN~~vl~v----~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~  135 (162)
                      +..++....+++|++||+.++++    ++|++.-+|.+..+.+||+++++...+..-.........  .. +..+..++.
T Consensus         8 i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~--~~-~~~~~~~~~   84 (303)
T PF05296_consen    8 IFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFFP--NI-YFSENVYKI   84 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--hh-hhhhhHHHH
Confidence            56678888999999999988744    244455579999999999999998776544444323222  11 225556777


Q ss_pred             hhhHhhhhhhHHHHHHHHHHhhhhc
Q psy2990         136 WNIMNEVIPTLFHTASIWLTLALAV  160 (162)
Q Consensus       136 ~~~~~~~~~~~~~~~s~~~l~~isi  160 (162)
                      ..++.    .+....|.|.-+.+++
T Consensus        85 ~~~~~----~f~~~~s~W~tt~Lsv  105 (303)
T PF05296_consen   85 IDFLW----MFSNSSSLWFTTWLSV  105 (303)
T ss_pred             HHHHH----HHHhHHHHHHHHHHHH
Confidence            66655    5556777777776653

TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane

>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor

Probab=97.31  E-value=0.00072  Score=53.64  Aligned_cols=91  Identities=13%  Similarity=0.205  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHHhhhhheeh-heecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccchhhhhh
Q psy2990          60 MYGYVMPFLLLITIIANTLIVV-VLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNI  138 (162)
Q Consensus        60 ~~~~~~~~i~~~gi~gN~~vl~-v~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~  138 (162)
                      ...++..+..+++++|-++++. .++.|++|++.+-++.-++++|++...........    .+..   .+...|+++++
T Consensus         8 ~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~~~----~~~~---~~s~lC~~Qaf   80 (303)
T PF05462_consen    8 TLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMTLS----PSAG---ENSFLCQFQAF   80 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhc----ccCC---CCCcchhhHhH
Confidence            4444555667788899988875 46889999999999999999999977644322211    1111   15678999999


Q ss_pred             HhhhhhhHHHHHHHHHHhhhhcc
Q psy2990         139 MNEVIPTLFHTASIWLTLALAVQ  161 (162)
Q Consensus       139 ~~~~~~~~~~~~s~~~l~~isid  161 (162)
                      +.    ..+..++.+..++||++
T Consensus        81 li----q~f~~as~lWt~~iA~n   99 (303)
T PF05462_consen   81 LI----QFFMLASFLWTLCIAFN   99 (303)
T ss_pred             HH----HHhhHHHHHHHHHHHHH
Confidence            98    88888888888888764

>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=97.16  E-value=0.0024  Score=47.74  Aligned_cols=71  Identities=17%  Similarity=0.123  Sum_probs=50.0

Q ss_pred             ecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccchhhhhhHhhhhhhHHHHHHHHHHhhhhcc
Q psy2990          84 SKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQ  161 (162)
Q Consensus        84 ~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~s~~~l~~isid  161 (162)
                      ..+++|.-.+.++.||.++|++-++..+....... .++ .- ..+...|..++++.    ...-.++-+...+||++
T Consensus        28 ~~~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l-~~~-~i-~~~s~~C~aqGf~~----q~g~~~sd~~ilaIAih   98 (201)
T PF11710_consen   28 ITYRRRSFRHQLILNLLLADFIQALAFLISPIRWL-ARG-GI-IAPSPFCQAQGFFL----QVGDEASDLWILAIAIH   98 (201)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcC-Ce-eCCCCchhhhHHHH----HHHHHHHHHHHHHHHHH
Confidence            33566677777999999999999886554344322 222 22 12678999999988    77778888888888764

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.

>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.08  E-value=0.0014  Score=51.01  Aligned_cols=88  Identities=16%  Similarity=0.278  Sum_probs=59.1

Q ss_pred             HHHHHHhhhhheeh-heecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccch-hhhhhHhhhhhh
Q psy2990          68 LLLITIIANTLIVV-VLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAAC-YAWNIMNEVIPT  145 (162)
Q Consensus        68 i~~~gi~gN~~vl~-v~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C-~~~~~~~~~~~~  145 (162)
                      +.++|++.|.++++ +.+.|++|++-+.+..+.|++|.+.+...+-........+   .++...... .+.++..    .
T Consensus         3 ~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~---~~~~~~~~~s~~~g~~~----~   75 (274)
T PF10328_consen    3 ISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFWVVPMTLLD---ISFLPSSLNSIIFGFIG----M   75 (274)
T ss_pred             eeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---cccCchHHHHHHHHHHH----H
Confidence            45789999999885 5788999999999999999999998884432222211112   112122222 2223333    5


Q ss_pred             HHHHHHHHHHhhhhccC
Q psy2990         146 LFHTASIWLTLALAVQR  162 (162)
Q Consensus       146 ~~~~~s~~~l~~isidR  162 (162)
                      .+-..+.++-.+||++|
T Consensus        76 ~~y~~~~~~~~liaiNR   92 (274)
T PF10328_consen   76 FCYFIGPLSHLLIAINR   92 (274)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            66677889999999888

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.79  E-value=0.0029  Score=49.23  Aligned_cols=66  Identities=21%  Similarity=0.243  Sum_probs=51.9

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHh-hhhHHHHHHHhcCCccccccccchhhhhhHhhhhhhHHHHHHHHHHhhhhc
Q psy2990          86 RHMRTPTNAVLMAMALSDMFTLLF-PAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAV  160 (162)
Q Consensus        86 ~~l~~~~~~~i~nLa~~Dll~~~~-~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~s~~~l~~isi  160 (162)
                      .+..+|.+..+.+||+++.++.+. ++|......     .|..+++.+||+..|++    ......|+.+.+.+|+
T Consensus         5 ~~r~kp~dlIl~hLa~aN~lvLl~rGip~~~~~~-----~~~~~~d~gCK~v~Y~~----RV~RglSictTCLLSv   71 (265)
T PF03402_consen    5 GHRLKPIDLILIHLALANILVLLSRGIPQTMAFF-----GWKFFDDIGCKIVFYIY----RVARGLSICTTCLLSV   71 (265)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHhhHHHHHHHh-----hcccCCCceeeeeeeeh----HHhchhhHHhhhHHHH
Confidence            345679999999999999999886 777544422     23344899999999999    8888999888887764

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane

>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []

Probab=96.19  E-value=0.026  Score=45.04  Aligned_cols=100  Identities=15%  Similarity=0.203  Sum_probs=63.4

Q ss_pred             chhhhHHHHHHHHHHHHHHhhhhheeh-heecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccch
Q psy2990          55 RYAQPMYGYVMPFLLLITIIANTLIVV-VLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAAC  133 (162)
Q Consensus        55 ~~~~~~~~~~~~~i~~~gi~gN~~vl~-v~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C  133 (162)
                      +.+++++++.+.+..++-.+.....+. +++++..|.+.+-.+.-||+.|++.+.........        .-+.|...|
T Consensus        29 g~~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG~--------l~i~G~vfC  100 (313)
T PF10321_consen   29 GVKRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITGI--------LAIFGAVFC  100 (313)
T ss_pred             CCcccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhhH--------HHhcCcccc
Confidence            455578888888888888888887775 45666677999999999999999987654322222        112367777


Q ss_pred             hhhhhH--hhhhhhHHHHHHHHHHhhhhccC
Q psy2990         134 YAWNIM--NEVIPTLFHTASIWLTLALAVQR  162 (162)
Q Consensus       134 ~~~~~~--~~~~~~~~~~~s~~~l~~isidR  162 (162)
                      +.-.+.  .+.+...+=+++...-..++++|
T Consensus       101 ~~P~~~~i~G~~~~~~W~~~c~~~i~LainR  131 (313)
T PF10321_consen  101 SYPRFIYIMGCIALGSWCGSCIICILLAINR  131 (313)
T ss_pred             CCchHhhhhhccchhhHHHHHHHHHHHHHHH
Confidence            654432  22222222244444445555555

Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=89.82  E-value=0.57  Score=36.77  Aligned_cols=48  Identities=17%  Similarity=0.372  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHhhhhheeh-he-ecCCCCChhHHHHHHHHHHHHHHHHhhh
Q psy2990          64 VMPFLLLITIIANTLIVV-VL-SKRHMRTPTNAVLMAMALSDMFTLLFPA  111 (162)
Q Consensus        64 ~~~~i~~~gi~gN~~vl~-v~-~~~~l~~~~~~~i~nLa~~Dll~~~~~~  111 (162)
                      ++.+.+.+|++.|++.++ ++ +.++.-+...+++.|-|+.|++.+....
T Consensus         4 ~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~   53 (292)
T PF10317_consen    4 YHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAF   53 (292)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567888999999998885 44 4445556788999999999999887443

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].

>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=89.12  E-value=0.95  Score=35.50  Aligned_cols=96  Identities=15%  Similarity=0.165  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHhhhhheeh-heecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccc-hhhhhhH
Q psy2990          62 GYVMPFLLLITIIANTLIVV-VLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAA-CYAWNIM  139 (162)
Q Consensus        62 ~~~~~~i~~~gi~gN~~vl~-v~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~-C~~~~~~  139 (162)
                      ..+-.+...+....|...++ +...|+.|++.-.++---...|.+.+....+.........   | . .+.. -+...+.
T Consensus         9 ~~i~i~~s~~~~~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~---~-~-~~~~~~~~~if~   83 (273)
T PF10316_consen    9 SIIGIIFSIITCLINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILFS---L-F-PEFLDYKNLIFY   83 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHH---h-C-hhhhccccEEee
Confidence            33444555667888988774 4433445555555666678999999997766555433221   1 1 1111 2222222


Q ss_pred             hhhhhhHHHHHHHHHHhhhhccC
Q psy2990         140 NEVIPTLFHTASIWLTLALAVQR  162 (162)
Q Consensus       140 ~~~~~~~~~~~s~~~l~~isidR  162 (162)
                      ..+-....+.+.......||+||
T Consensus        84 ~~~p~~~~~~iR~~l~~~Ia~dR  106 (273)
T PF10316_consen   84 IGWPSSNLGSIRSILALIIALDR  106 (273)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHH
Confidence            33333555667777888899998

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.

>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=87.53  E-value=0.36  Score=36.45  Aligned_cols=89  Identities=20%  Similarity=0.124  Sum_probs=2.8

Q ss_pred             HHHHHHHHHhhhhheehh-eecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccchhhhhhHhhhh
Q psy2990          65 MPFLLLITIIANTLIVVV-LSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVI  143 (162)
Q Consensus        65 ~~~i~~~gi~gN~~vl~v-~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~  143 (162)
                      ..+.+.+.+++=.+.+.. ...|++|+..+....||++++++..+..+..... ...+  ..+. .+..|+..+.+.   
T Consensus         7 ~~vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~~~~-~~~~--~~~~-~~~~C~~~a~~~---   79 (242)
T PF00002_consen    7 SYVGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIGISQ-TFSP--ISTT-NHCLCRAIAILL---   79 (242)
T ss_dssp             HHHHHH--------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHheehhh-cccc--cccc-ccccchhhhhHh---
Confidence            334455556655444432 3457888877888999999999876643322111 0000  0000 122499988877   


Q ss_pred             hhHHHHHHHHHHhhhhcc
Q psy2990         144 PTLFHTASIWLTLALAVQ  161 (162)
Q Consensus       144 ~~~~~~~s~~~l~~isid  161 (162)
                       ..+..++...+.+.++|
T Consensus        80 -hy~~la~f~Wm~~~~~~   96 (242)
T PF00002_consen   80 -HYFFLASFFWMLVEAFY   96 (242)
T ss_dssp             ------------------
T ss_pred             -HHHHHHHHHHHHHHHHH
Confidence             66666666666655543

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.

>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=85.60  E-value=6.5  Score=31.33  Aligned_cols=97  Identities=12%  Similarity=0.104  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHhhhhheehh-eecCCCCChhHHHHHHHHHHHHHHHHhhhhHH---HHHHHhcCCcccc-ccccchhhh
Q psy2990          62 GYVMPFLLLITIIANTLIVVV-LSKRHMRTPTNAVLMAMALSDMFTLLFPAPWL---FYMYTFGNHYKPL-SPVAACYAW  136 (162)
Q Consensus        62 ~~~~~~i~~~gi~gN~~vl~v-~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~---~~~~~~~~~~~~~-~~~~~C~~~  136 (162)
                      ..+-.+++++|++.++..++- ..++..|.-..+++....++.++.+..-.-..   +..+......-+. .+...|-..
T Consensus        20 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~~~~~~C~~l   99 (324)
T PF10292_consen   20 LIFNLLLSIIAFPVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMIPSTYRCFIL   99 (324)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccchhHHHHH
Confidence            345667777788877776653 46677888888888888888888765322222   2222221111111 133456555


Q ss_pred             hhHhhhhhhHHHHHHHHHHhhhhccC
Q psy2990         137 NIMNEVIPTLFHTASIWLTLALAVQR  162 (162)
Q Consensus       137 ~~~~~~~~~~~~~~s~~~l~~isidR  162 (162)
                      -...    .++.+.+..+..++.+||
T Consensus       100 R~~~----~~~~~~~~~t~v~l~IER  121 (324)
T PF10292_consen  100 RIPY----NFGLFLVSFTTVSLVIER  121 (324)
T ss_pred             HHHH----HHHHHHHHHHHHHHHHHH
Confidence            5555    788889999999999998

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].

>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=81.61  E-value=2.3  Score=33.29  Aligned_cols=41  Identities=22%  Similarity=0.454  Sum_probs=27.9

Q ss_pred             HHHhhhhheeh-he--ecCC--CCChhHHHHHHHHHHHHHHHHhhh
Q psy2990          71 ITIIANTLIVV-VL--SKRH--MRTPTNAVLMAMALSDMFTLLFPA  111 (162)
Q Consensus        71 ~gi~gN~~vl~-v~--~~~~--l~~~~~~~i~nLa~~Dll~~~~~~  111 (162)
                      +.++-.+.+++ ++  |+++  ++++-+-++.+-+++|++..+...
T Consensus         7 ~tlply~~il~~l~~~r~~~~~~~~~Fy~l~~~~~iaDi~~~~~~~   52 (283)
T PF10323_consen    7 VTLPLYIFILYCLLKLRKRSKTFKSTFYTLLIQHCIADILSMLFYF   52 (283)
T ss_pred             ehHHHHHHHHHHHHHcccCccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455553 23  3333  679999999999999999877543

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	162
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	2e-10
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	3e-08
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	2e-07
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	3e-07
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	8e-07
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	9e-07
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	9e-06
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	1e-05
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	1e-05
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	1e-04
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	5e-04

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349

 Score = 56.6 bits (137), Expect = 2e-10
 Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 15/148 (10%)

Query: 17  MTTTEILNASISPSNMTGLADDMMQGFDYLNISTELPIRYAQPMYGYVMPFLLLITIIAN 76
           M  TE  N  +  SN TG+       F+        P +++  M    M  L+++    N
Sbjct: 2   MNGTEGPNFYVPFSNKTGVVRSP---FEAPQYYLAEPWQFS--MLAAYMFLLIMLGFPIN 56

Query: 77  TL-IVVVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVA-ACY 134
            L + V +  + +RTP N +L+ +A++D+F +         +YT  + Y    P      
Sbjct: 57  FLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFT--TTLYTSLHGYFVFGPTGCNLE 114

Query: 135 AWNIMNEVIPTLFHTASIWLTLALAVQR 162
            +        TL    ++W  + LA++R
Sbjct: 115 GF------FATLGGEIALWSLVVLAIER 136

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481

 Score = 50.9 bits (121), Expect = 3e-08
 Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 7/115 (6%)

Query: 49  STELPIRYAQPMYGYVMPFLLLITIIANTL-IVVVLSKRHMRTPTNAVLMAMALSDMFTL 107
           ST          Y      L+L  +  N L  + VL +R ++T TN +++++A++D+   
Sbjct: 29  STGASQARPHAYYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVA 88

Query: 108 LFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR 162
               PW+ Y+   G      S +  C  +  ++     +  TASIW   A+++ R
Sbjct: 89  TLVMPWVVYLEVTG-GVWNFSRI-CCDVFVTLD----VMMCTASIWNLCAISIDR 137

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520

 Score = 48.7 bits (115), Expect = 2e-07
 Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 9/104 (8%)

Query: 60  MYGYVMPFLLLITIIANTL-IVVVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMY 118
           +   V   +    I+ N   ++ +   +    P    +  +ALSD+   +     L    
Sbjct: 65  LTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLSG 124

Query: 119 TFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR 162
                  P    A  +           +  +AS++  LA+A++R
Sbjct: 125 ATTYKLTP----AQWFLREGSM----FVALSASVFSLLAIAIER 160

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488

 Score = 47.8 bits (113), Expect = 3e-07
 Identities = 20/114 (17%), Positives = 43/114 (37%), Gaps = 16/114 (14%)

Query: 53  PIRYAQPMYGYVMPFLLLITIIANTL-IVVVLSKRHMRTPTNAVLMAMALSDMFTLLFPA 111
           P      +Y  V   + ++ I+ N L    V    +++  TN  ++++A +D+   +   
Sbjct: 16  PPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAI 75

Query: 112 PW---LFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR 162
           P+   +   +    H         C            +   +SI+  LA+A+ R
Sbjct: 76  PFAITISTGFCAACHG--------CLFIACFV----LVLTQSSIFSLLAIAIDR 117

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 46.5 bits (110), Expect = 8e-07
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 11/111 (9%)

Query: 55  RYAQPMYGYVMPFLLLITIIANTL-IVVVLSKRHMRTPTNAVLMAMALSDM-FTLLFPAP 112
                  G  +    +I    N + I +    + ++TP N  ++ +A SD  F+L+   P
Sbjct: 31  DAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFP 90

Query: 113 WLFYMYTFGNHYKPLSPVA-ACYAWNIMNEVIPTLFHTASIWLTLALAVQR 162
                 +           A   Y +      I  +F   SI     +++ R
Sbjct: 91  --LMTISCFLKKWIFGFAACKVYGF------IGGIFGFMSIMTMAMISIDR 133

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447

 Score = 46.6 bits (110), Expect = 9e-07
 Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 16/123 (13%)

Query: 44  DYLNISTELPIRYAQPMYGYVMPFLLLITIIANTL-IVVVLSKRHMRTPTNAVLMAMALS 102
           DY +     P      +Y  V   + ++ I+ N L    V    +++  TN  ++++A +
Sbjct: 17  DYKDDDDGAPPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAA 76

Query: 103 DMFTLLFPAPW---LFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALA 159
           D+   +   P+   +   +    H         C            +   +SI+  LA+A
Sbjct: 77  DIAVGVLAIPFAITISTGFCAACHG--------CLFIACFV----LVLTQSSIFSLLAIA 124

Query: 160 VQR 162
           + R
Sbjct: 125 IDR 127

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452

 Score = 43.5 bits (102), Expect = 9e-06
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 8/104 (7%)

Query: 60  MYGYVMPFLLLITIIANTL-IVVVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMY 118
               V+  + L+T+  N L +  V S+R + T  N  +++++++D+       P    + 
Sbjct: 10  PLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMP--MNIL 67

Query: 119 TFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR 162
                   L     C  W  M+     +  TASI+    L + R
Sbjct: 68  YLLMSKWSLGRP-LCLFWLSMD----YVASTASIFSVFILCIDR 106

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 8/102 (7%)

Query: 62  GYVMPFLLLITIIANTL-IVVVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTF 120
             V   L L+TII N L +V +   RH++T  N  L ++A +D+   +F      Y    
Sbjct: 27  VLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMN--LYTLYT 84

Query: 121 GNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR 162
              Y PL PV  C  W  ++     +   AS+   L ++  R
Sbjct: 85  VIGYWPLGPV-VCDLWLALD----YVVSNASVMNLLIISFDR 121

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 29/140 (20%), Positives = 48/140 (34%), Gaps = 8/140 (5%)

Query: 24  NASISPSNMTGLADDMMQGFDYLNISTELPIRYAQPMYGYVMPFLLLITIIANTL-IVVV 82
           +A   P N +       +     +  T+          G VM  ++L  +  N L I  +
Sbjct: 6   DAMGQPGNGSAFLLAPNRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAI 65

Query: 83  LSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEV 142
                ++T TN  + ++A +D+   L   P  F                 C  W  ++  
Sbjct: 66  AKFERLQTVTNYFITSLACADLVMGLAVVP--FGAAHILMKMWTFGNF-WCEFWTSID-- 120

Query: 143 IPTLFHTASIWLTLALAVQR 162
              L  TASI     +AV R
Sbjct: 121 --VLCVTASIETLCVIAVDR 138

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 18/105 (17%)

Query: 64  VMPFLLLITIIANTL-IVVVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPW-----LFYM 117
           VM  ++L  +  N L I  +     ++T TN  + ++A +D+   L   P+     L   
Sbjct: 188 VMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKT 247

Query: 118 YTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR 162
           +TFGN +        C  W  ++     L  TASI     +AV R
Sbjct: 248 WTFGNFW--------CEFWTSID----VLCVTASIETLCVIAVDR 280

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 70  LITIIANTL-IVVVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGN 122
           + +++ N + + ++L+ + MRT TN  L+ +A ++     F     F       
Sbjct: 44  VTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNE 97

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	162
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	99.8
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	99.77
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	99.76
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	99.75
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	99.73
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	99.71
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	99.71
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	99.7
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	99.69
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	99.69
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	99.68
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	99.68
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	99.67
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	99.66
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	99.66
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	99.65
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	99.65
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	99.65
2lot_A	64	Apelin receptor; membrane protein; NMR {Homo sapie	97.1
1hll_A	32	Alpha-2A adrenergic receptor; helix-linker-helix,	92.8

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=99.80  E-value=5.8e-20  Score=152.20  Aligned_cols=102  Identities=20%  Similarity=0.348  Sum_probs=86.5

Q ss_pred             hhhhHHHHHHHHHHHHHHhhhhheehh-eecCC---CCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCcccccccc
Q psy2990          56 YAQPMYGYVMPFLLLITIIANTLIVVV-LSKRH---MRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVA  131 (162)
Q Consensus        56 ~~~~~~~~~~~~i~~~gi~gN~~vl~v-~~~~~---l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~  131 (162)
                      +...+..++|.+++++|++||++|+++ +++|+   +|+++|+|++|||++|++++++.+|+.+.........|.+ |+.
T Consensus        30 ~~~v~~~~~~~~i~~~g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~~~w~~-g~~  108 (510)
T 4grv_A           30 YSKVLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAF-GDA  108 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCSS-HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEh-hHH
Confidence            334577889999999999999999854 56554   4578999999999999999999999988866555557866 999


Q ss_pred             chhhhhhHhhhhhhHHHHHHHHHHhhhhccC
Q psy2990         132 ACYAWNIMNEVIPTLFHTASIWLTLALAVQR  162 (162)
Q Consensus       132 ~C~~~~~~~~~~~~~~~~~s~~~l~~isidR  162 (162)
                      .|++..++.    .++..+|+++|++||+||
T Consensus       109 ~C~~~~~~~----~~~~~~S~~~l~~is~dR  135 (510)
T 4grv_A          109 GCRGYYFLR----DACTYATALNVASLSVAR  135 (510)
T ss_dssp             HHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH----HHHHHHHHHHHHHHHHHh
Confidence            999999988    999999999999999998

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=99.77  E-value=2e-18  Score=134.70  Aligned_cols=101  Identities=24%  Similarity=0.403  Sum_probs=88.3

Q ss_pred             chhhhHHHHHHHHHHHHHHhhhhheehh-eecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccch
Q psy2990          55 RYAQPMYGYVMPFLLLITIIANTLIVVV-LSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAAC  133 (162)
Q Consensus        55 ~~~~~~~~~~~~~i~~~gi~gN~~vl~v-~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C  133 (162)
                      +....+..+++.+++++|++||++++++ .++|++|++.|++++|||++|++.+++..|..+.....+  .|.+ |...|
T Consensus        35 ~~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~Lai~Dll~~~~~~~~~~~~~~~~--~~~~-~~~~C  111 (349)
T 1u19_A           35 PWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHG--YFVF-GPTGC  111 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT--SCTT-HHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHheEeehhhhhhhcCchhHHHHHHHHHHHHHHHhcchHHHHHHhcC--eeeC-ChhHH
Confidence            3444577888999999999999999865 688899999999999999999999999999888765555  6755 88999


Q ss_pred             hhhhhHhhhhhhHHHHHHHHHHhhhhccC
Q psy2990         134 YAWNIMNEVIPTLFHTASIWLTLALAVQR  162 (162)
Q Consensus       134 ~~~~~~~~~~~~~~~~~s~~~l~~isidR  162 (162)
                      ++..++.    ..+..+|++++++||+||
T Consensus       112 ~~~~~~~----~~~~~~s~~~l~~isidR  136 (349)
T 1u19_A          112 NLEGFFA----TLGGEIALWSLVVLAIER  136 (349)
T ss_dssp             HHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence            9999988    899999999999999998

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=99.76  E-value=2.1e-18  Score=132.67  Aligned_cols=95  Identities=19%  Similarity=0.288  Sum_probs=82.7

Q ss_pred             hHHHHHHHHHHHHHHhhhhheeh-heecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccchhhhh
Q psy2990          59 PMYGYVMPFLLLITIIANTLIVV-VLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWN  137 (162)
Q Consensus        59 ~~~~~~~~~i~~~gi~gN~~vl~-v~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~  137 (162)
                      .+..++|.+++++|++||+++++ +.++|++|+++|+|+.|||++|++.++ ..|...... ..  .|.+ |+..|+...
T Consensus        12 ~i~~i~y~ii~i~gv~gN~lvi~vi~~~~~lrt~~n~~i~nLAvaDll~~l-~~p~~~~~~-~~--~~~~-~~~~c~~~~   86 (296)
T 2lnl_A           12 YVVIIAYALVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFAL-TLPIWAASK-VN--GWIF-GTFLCKVVS   86 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCSTTHHHHHHHHHHHHHHHH-HHHHHHHHH-HS--SSCC-SSHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHH-hhhHHHhhc-cC--CCcc-chhHHHHHh
Confidence            46778899999999999999985 578899999999999999999999876 567666533 34  5755 999999999


Q ss_pred             hHhhhhhhHHHHHHHHHHhhhhccC
Q psy2990         138 IMNEVIPTLFHTASIWLTLALAVQR  162 (162)
Q Consensus       138 ~~~~~~~~~~~~~s~~~l~~isidR  162 (162)
                      ++.    ..+..+|++++++||+||
T Consensus        87 ~~~----~~~~~~s~~~l~~isidR  107 (296)
T 2lnl_A           87 LLK----EVNFYSGILLLACISVDR  107 (296)
T ss_dssp             HHH----HHHHHHHHHHHHHHHHHH
T ss_pred             hhh----hhhHHHHHHHHHHHHhhh
Confidence            988    899999999999999998

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=99.75  E-value=8.9e-18  Score=132.22  Aligned_cols=97  Identities=20%  Similarity=0.257  Sum_probs=86.1

Q ss_pred             hHHHHHHHHHHHHHHhhhhheeh-heecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccchhhhh
Q psy2990          59 PMYGYVMPFLLLITIIANTLIVV-VLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWN  137 (162)
Q Consensus        59 ~~~~~~~~~i~~~gi~gN~~vl~-v~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~  137 (162)
                      .+..+++.+++++|++||+++++ +.++|++|++.|++++|||++|++.+++..|..+.....+  .|.+ |+..|++..
T Consensus        33 ~~~~~~~~~i~~~gi~gN~lvi~vi~~~~~l~~~~~~~l~~LaiaDll~~~~~~p~~~~~~~~~--~~~~-~~~~C~~~~  109 (364)
T 2ks9_A           33 VLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHN--EWYY-GLFYCKFHN  109 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT--SCSS-CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--Cccc-hHHHHHhHH
Confidence            35578899999999999999986 4788999999999999999999999998999888765555  6755 889999999


Q ss_pred             hHhhhhhhHHHHHHHHHHhhhhccC
Q psy2990         138 IMNEVIPTLFHTASIWLTLALAVQR  162 (162)
Q Consensus       138 ~~~~~~~~~~~~~s~~~l~~isidR  162 (162)
                      ++.    ..+..+|++++++||+||
T Consensus       110 ~~~----~~~~~~s~~~l~~isidR  130 (364)
T 2ks9_A          110 FFP----IAAVFASIYSMTAVAFDR  130 (364)
T ss_dssp             HHH----HHHHHHHHHHHHHHHHHH
T ss_pred             HHH----HHHHHHHHHHHHHHHHHH
Confidence            988    899999999999999998

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=99.73  E-value=5.1e-18  Score=139.90  Aligned_cols=97  Identities=24%  Similarity=0.288  Sum_probs=87.2

Q ss_pred             hHHHHHHHHHHHHHHhhhhheehh-eecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccchhhhh
Q psy2990          59 PMYGYVMPFLLLITIIANTLIVVV-LSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWN  137 (162)
Q Consensus        59 ~~~~~~~~~i~~~gi~gN~~vl~v-~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~  137 (162)
                      .+..+++.+++++|++||++++++ +++|++|+++|+|++|||++|++.+++.+|..+.....+  .|.+ |...|++..
T Consensus        41 ~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~l~~~~~~~l~nLAiaDll~~~~~~p~~~~~~~~~--~w~~-~~~~C~~~~  117 (500)
T 2rh1_A           41 VGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMK--MWTF-GNFWCEFWT  117 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT--SCCS-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcC-CcchhhHHH
Confidence            367788999999999999999864 678899999999999999999999999999988866655  7865 899999999


Q ss_pred             hHhhhhhhHHHHHHHHHHhhhhccC
Q psy2990         138 IMNEVIPTLFHTASIWLTLALAVQR  162 (162)
Q Consensus       138 ~~~~~~~~~~~~~s~~~l~~isidR  162 (162)
                      ++.    .++.++|++++++||+||
T Consensus       118 ~~~----~~~~~~Si~~l~~isidR  138 (500)
T 2rh1_A          118 SID----VLCVTASIETLCVIAVDR  138 (500)
T ss_dssp             HHH----HHHHHHHHHHHHHHHHHH
T ss_pred             HHH----HHHHHHHHHHHHHHHHHH
Confidence            988    899999999999999998

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=99.71  E-value=2.1e-17  Score=133.51  Aligned_cols=97  Identities=20%  Similarity=0.264  Sum_probs=86.7

Q ss_pred             hhHHHHHHHHHHHHHHhhhhheehh-eecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccchhhh
Q psy2990          58 QPMYGYVMPFLLLITIIANTLIVVV-LSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAW  136 (162)
Q Consensus        58 ~~~~~~~~~~i~~~gi~gN~~vl~v-~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~  136 (162)
                      ..+..+++.+++++|++||++++++ .++|++|+++|+|++|||++|++.++. +|..+.....+  .|.+ |...|++.
T Consensus        17 ~~~~~~~~~~~~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~-~p~~~~~~~~~--~~~~-~~~~C~~~   92 (464)
T 4dkl_A           17 AITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATST-LPFQSVNYLMG--TWPF-GNILCKIV   92 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHS--SCCS-CSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHeehhhhhccccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhC--Cccc-ccchhhhH
Confidence            3477889999999999999999864 688899999999999999999999886 89888877666  7766 99999999


Q ss_pred             hhHhhhhhhHHHHHHHHHHhhhhccC
Q psy2990         137 NIMNEVIPTLFHTASIWLTLALAVQR  162 (162)
Q Consensus       137 ~~~~~~~~~~~~~~s~~~l~~isidR  162 (162)
                      .++.    .++..+|++++++||+||
T Consensus        93 ~~~~----~~~~~~s~~~l~~is~dR  114 (464)
T 4dkl_A           93 ISID----YYNMFTSIFTLCTMSVDR  114 (464)
T ss_dssp             HHHH----HHHHHHHHHHHHHHHHHH
T ss_pred             HHHH----HHHHHHHHHHHHHHHHHH
Confidence            9988    999999999999999998

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=99.71  E-value=1.4e-17  Score=134.74  Aligned_cols=97  Identities=28%  Similarity=0.415  Sum_probs=87.4

Q ss_pred             hHHHHHHHHHHHHHHhhhhheehh-eecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccchhhhh
Q psy2990          59 PMYGYVMPFLLLITIIANTLIVVV-LSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWN  137 (162)
Q Consensus        59 ~~~~~~~~~i~~~gi~gN~~vl~v-~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~  137 (162)
                      .+..+++.+++++|++||++++++ .++|++|++.|+|++|||++|++.+++.+|..+.....+  .|.+ |...|++..
T Consensus        24 ~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~--~~~~-~~~~C~~~~  100 (467)
T 3uon_A           24 VFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIG--YWPL-GPVVCDLWL  100 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSS--SCCS-CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHheeeeeecCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CccC-CcchHhHHH
Confidence            467788999999999999999865 678899999999999999999999999999888866655  7755 899999999


Q ss_pred             hHhhhhhhHHHHHHHHHHhhhhccC
Q psy2990         138 IMNEVIPTLFHTASIWLTLALAVQR  162 (162)
Q Consensus       138 ~~~~~~~~~~~~~s~~~l~~isidR  162 (162)
                      ++.    .++.++|++++++||+||
T Consensus       101 ~~~----~~~~~~s~~~l~~isidR  121 (467)
T 3uon_A          101 ALD----YVVSNASVMNLLIISFDR  121 (467)
T ss_dssp             HHH----HHHHHHHHHHHHHHHHHH
T ss_pred             HHH----HHHHHHHHHHHHHHHHHH
Confidence            988    999999999999999998

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=99.70  E-value=4.4e-17  Score=133.14  Aligned_cols=99  Identities=15%  Similarity=0.318  Sum_probs=85.5

Q ss_pred             chhhhHHHHHHHHHHHHHHhhhhheehh-eecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccch
Q psy2990          55 RYAQPMYGYVMPFLLLITIIANTLIVVV-LSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAAC  133 (162)
Q Consensus        55 ~~~~~~~~~~~~~i~~~gi~gN~~vl~v-~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C  133 (162)
                      .....+..+++.+++++|++||++++++ .++|++|+++|+|++|||++|++.+ +.+|..+.... .  .|.+ |...|
T Consensus        45 ~~~~~~~~~~~~~i~~~g~~gN~lvi~~~~~~~~l~~~~~~~l~~La~~Dll~~-~~~p~~~~~~~-~--~~~~-~~~~C  119 (502)
T 3odu_A           45 NFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFV-ITLPFWAVDAV-A--NWYF-GNFLC  119 (502)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHH-TTHHHHHHHHH-T--CCCS-HHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHh-c--CCcC-Cchhh
Confidence            3344578889999999999999999865 6888999999999999999999996 58898877443 4  5755 88899


Q ss_pred             hhhhhHhhhhhhHHHHHHHHHHhhhhccC
Q psy2990         134 YAWNIMNEVIPTLFHTASIWLTLALAVQR  162 (162)
Q Consensus       134 ~~~~~~~~~~~~~~~~~s~~~l~~isidR  162 (162)
                      ++..++.    .++..+|++++++||+||
T Consensus       120 ~~~~~~~----~~~~~~s~~~l~~is~dR  144 (502)
T 3odu_A          120 KAVHVIY----TVNLYSSVWILAFISLDR  144 (502)
T ss_dssp             HHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHH----HHHHHHHHHHHHHHHHHH
Confidence            9999988    899999999999999998

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=99.69  E-value=1.7e-17  Score=137.56  Aligned_cols=96  Identities=18%  Similarity=0.214  Sum_probs=84.4

Q ss_pred             hHHHHHHHHHHHHHHhhhhheehh-eecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccchhhhh
Q psy2990          59 PMYGYVMPFLLLITIIANTLIVVV-LSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWN  137 (162)
Q Consensus        59 ~~~~~~~~~i~~~gi~gN~~vl~v-~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~  137 (162)
                      .+..+++.+++++|++||++++++ .++|++|+++|+|++|||++|++++++..|..+.. ...  .|.+ +...|++..
T Consensus        64 ~~~~~~~~~i~~~g~~gN~lvi~vi~~~~~lr~~~~~~l~nLA~aDll~~~~~~p~~~~~-~~~--~~~~-~~~~c~~~~  139 (520)
T 3v2y_A           64 KLTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLS-GAT--TYKL-TPAQWFLRE  139 (520)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG--GTTS-CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCccccChHHHHHHHHHHHHHHHHHHHHHHHHHc-ccc--ceee-CccccchHH
Confidence            477889999999999999999965 68899999999999999999999999888877764 223  5655 888999988


Q ss_pred             hHhhhhhhHHHHHHHHHHhhhhccC
Q psy2990         138 IMNEVIPTLFHTASIWLTLALAVQR  162 (162)
Q Consensus       138 ~~~~~~~~~~~~~s~~~l~~isidR  162 (162)
                      ++.    ..+.++|+++|++||+||
T Consensus       140 ~~~----~~~~~~S~~~l~~isidR  160 (520)
T 3v2y_A          140 GSM----FVALSASVFSLLAIAIER  160 (520)
T ss_dssp             HHH----HHHHHHHHHHHHHHHHHH
T ss_pred             HHH----HHHHHHHHHHHHHHHHHH
Confidence            887    899999999999999998

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=99.69  E-value=2.1e-17  Score=134.36  Aligned_cols=97  Identities=25%  Similarity=0.505  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHHhhhhheeh-heecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccchhhhhh
Q psy2990          60 MYGYVMPFLLLITIIANTLIVV-VLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNI  138 (162)
Q Consensus        60 ~~~~~~~~i~~~gi~gN~~vl~-v~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~  138 (162)
                      ++.+++.+++++|++||+++++ +.++|++|+++|+|++|||++|++.+++.+|..+..... ...|.+ +...|++..+
T Consensus        40 ~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~-~~~~~~-~~~~C~~~~~  117 (481)
T 3pbl_A           40 YYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVT-GGVWNF-SRICCDVFVT  117 (481)
T ss_dssp             -CCSHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHT-TSCCCS-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhhhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccc-CcchhhhHHH
Confidence            5667889999999999999985 468899999999999999999999999899988875443 236755 8999999999


Q ss_pred             HhhhhhhHHHHHHHHHHhhhhccC
Q psy2990         139 MNEVIPTLFHTASIWLTLALAVQR  162 (162)
Q Consensus       139 ~~~~~~~~~~~~s~~~l~~isidR  162 (162)
                      +.    .++..+|++++++||+||
T Consensus       118 ~~----~~~~~~s~~~l~~is~dR  137 (481)
T 3pbl_A          118 LD----VMMCTASIWNLCAISIDR  137 (481)
T ss_dssp             HH----HHHHHHHHHHHHHHHHHH
T ss_pred             HH----HHHHHHHHHHHHHHHHHH
Confidence            88    899999999999999998

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=99.68  E-value=3.4e-17  Score=132.00  Aligned_cols=96  Identities=23%  Similarity=0.322  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHHhhhhheeh-heecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccchhhhhh
Q psy2990          60 MYGYVMPFLLLITIIANTLIVV-VLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNI  138 (162)
Q Consensus        60 ~~~~~~~~i~~~gi~gN~~vl~-v~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~  138 (162)
                      +..+++.+++++|++||+++++ +.++|++|++.|+|++|||++|++.+++.+|..+.....+  .|.+ |...|++..+
T Consensus        10 ~~~~~~~~~~~~gi~gN~~vi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~--~~~~-~~~~C~~~~~   86 (452)
T 3rze_A           10 PLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMS--KWSL-GRPLCLFWLS   86 (452)
T ss_dssp             GGGTHHHHHHHHHHHHHHHHHHHHHHCSTTCCGGGHHHHHHHHHHHHHHHTHHHHHHHHHHSS--SCSS-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CccC-CchhHhHHHH
Confidence            5667899999999999999986 5688899999999999999999999999999998866655  7755 8999999999


Q ss_pred             HhhhhhhHHHHHHHHHHhhhhccC
Q psy2990         139 MNEVIPTLFHTASIWLTLALAVQR  162 (162)
Q Consensus       139 ~~~~~~~~~~~~s~~~l~~isidR  162 (162)
                      +.    ..+..+|++++++||+||
T Consensus        87 ~~----~~~~~~s~~~l~~is~dR  106 (452)
T 3rze_A           87 MD----YVASTASIFSVFILCIDR  106 (452)
T ss_dssp             HH----HHHHHHHHHHHHHHHHHH
T ss_pred             HH----HHHHHHHHHHHHHHHHHH
Confidence            88    999999999999999998

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=99.68  E-value=3.5e-17  Score=125.64  Aligned_cols=97  Identities=23%  Similarity=0.325  Sum_probs=86.9

Q ss_pred             hHHHHHHHHHHHHHHhhhhheehh-eecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccchhhhh
Q psy2990          59 PMYGYVMPFLLLITIIANTLIVVV-LSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWN  137 (162)
Q Consensus        59 ~~~~~~~~~i~~~gi~gN~~vl~v-~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~  137 (162)
                      ....+++.+++++|++||++++++ .++|++|++.|++++|||++|++.+++..|..+.....+  .|.+ |...|++..
T Consensus        12 ~~~~~~~~~~~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~--~~~~-~~~~C~~~~   88 (315)
T 4amj_A           12 AGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRG--TWLW-GSFLCELWT   88 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHS--SCCS-CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHhhhchhhcchHHHHHHHHHHHHHHHHHHhccHHHHHHhcC--Ceec-cccHHHHHH
Confidence            467788999999999999999865 688899999999999999999999998999888766655  7755 899999999


Q ss_pred             hHhhhhhhHHHHHHHHHHhhhhccC
Q psy2990         138 IMNEVIPTLFHTASIWLTLALAVQR  162 (162)
Q Consensus       138 ~~~~~~~~~~~~~s~~~l~~isidR  162 (162)
                      ++.    ..+..+|++++++||+||
T Consensus        89 ~~~----~~~~~~S~~~l~~isidR  109 (315)
T 4amj_A           89 SLD----VLCVTASIETLCVIAIDR  109 (315)
T ss_dssp             HHH----HHHHHHHHHHHHHHHHHH
T ss_pred             HHH----HHHHHHHHHHHHHHHHHH
Confidence            988    999999999999999998

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=99.67  E-value=6.3e-17  Score=131.63  Aligned_cols=98  Identities=15%  Similarity=0.189  Sum_probs=83.3

Q ss_pred             hhHHHHHHHHHHHHHHhhhhheeh-heecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccchhhh
Q psy2990          58 QPMYGYVMPFLLLITIIANTLIVV-VLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAW  136 (162)
Q Consensus        58 ~~~~~~~~~~i~~~gi~gN~~vl~-v~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~  136 (162)
                      ..+..+++.+++++|++||+++++ +.++|++|+++|+|++|||++|++.++ .+|..+..... ...|.+ |...|++.
T Consensus        20 ~~~~~~~~~~i~~~~i~gN~lvi~~~~~~~~l~~~~~~~l~~La~aDll~~~-~~~~~~~~~~~-~~~~~~-~~~~C~~~   96 (484)
T 3vw7_A           20 TLFVPSVYTGVFVVSLPLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFVS-VLPFKISYYFS-GSDWQF-GSELCRFV   96 (484)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHT-THHHHHHHHHT-TSCCCS-CHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh-cCCccc-chhHHhHH
Confidence            347888999999999999999986 468889999999999999999999976 46666654433 236755 99999999


Q ss_pred             hhHhhhhhhHHHHHHHHHHhhhhccC
Q psy2990         137 NIMNEVIPTLFHTASIWLTLALAVQR  162 (162)
Q Consensus       137 ~~~~~~~~~~~~~~s~~~l~~isidR  162 (162)
                      .++.    .++..+|++++++||+||
T Consensus        97 ~~~~----~~~~~~S~~~l~~is~dR  118 (484)
T 3vw7_A           97 TAAF----YCNMYASILLMTVISIDR  118 (484)
T ss_dssp             HHHH----HHHHHHHHHHHHHHHHHH
T ss_pred             HHHH----HHHHHHHHHHHHHHHHHH
Confidence            9988    999999999999999998

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=99.66  E-value=9.1e-17  Score=130.53  Aligned_cols=95  Identities=18%  Similarity=0.264  Sum_probs=83.7

Q ss_pred             hHHHHHHHHHHHHHHhhhhheehh-eecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccchhhhh
Q psy2990          59 PMYGYVMPFLLLITIIANTLIVVV-LSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWN  137 (162)
Q Consensus        59 ~~~~~~~~~i~~~gi~gN~~vl~v-~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~  137 (162)
                      .++.+++.+++++|++||++++++ .++|++|+++|+|++|||++|++.+++.+|..+...  .  .|.+ +...|++..
T Consensus        22 ~~~~~~~~~i~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~--~--~~~~-~~~~C~~~~   96 (488)
T 3eml_A           22 SVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS--T--GFCA-ACHGCLFIA   96 (488)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSSHHHHHHHHHHHHHHHHHTHHHHHHHHT--T--CCEE-CHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhheeeccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHh--c--cccc-cchHHHHHH
Confidence            477789999999999999999864 688899999999999999999999999999877632  2  4544 888999999


Q ss_pred             hHhhhhhhHHHHHHHHHHhhhhccC
Q psy2990         138 IMNEVIPTLFHTASIWLTLALAVQR  162 (162)
Q Consensus       138 ~~~~~~~~~~~~~s~~~l~~isidR  162 (162)
                      ++.    .++.++|++++++||+||
T Consensus        97 ~~~----~~~~~~s~~~l~~is~dR  117 (488)
T 3eml_A           97 CFV----LVLTQSSIFSLLAIAIDR  117 (488)
T ss_dssp             HHH----HHHHHHHHHHHHHHHHHH
T ss_pred             HHH----HHHHHHHHHHHHHHHHHh
Confidence            988    899999999999999998

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=99.65  E-value=1.6e-16  Score=131.31  Aligned_cols=97  Identities=24%  Similarity=0.280  Sum_probs=87.5

Q ss_pred             hHHHHHHHHHHHHHHhhhhheeh-heecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccchhhhh
Q psy2990          59 PMYGYVMPFLLLITIIANTLIVV-VLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWN  137 (162)
Q Consensus        59 ~~~~~~~~~i~~~gi~gN~~vl~-v~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~  137 (162)
                      .+..+++.+++++|++||+++++ +.++|++|++.|+|++|||++|++.+++.+|..+.....+  .|.+ +...|++..
T Consensus       183 ~~~~i~~~ii~~~gi~gN~lvi~vi~~~~~lr~~~~~ll~nLAiaDll~~~~~~p~~~~~~~~~--~~~~-~~~~C~~~~  259 (514)
T 3sn6_R          183 VGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTK--TWTF-GNFWCEFWT  259 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHT--SCCS-CSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHhhhheecccccccHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcC--CeeC-CcchhhhHH
Confidence            46778999999999999999986 5688899999999999999999999999999888876665  7755 899999999


Q ss_pred             hHhhhhhhHHHHHHHHHHhhhhccC
Q psy2990         138 IMNEVIPTLFHTASIWLTLALAVQR  162 (162)
Q Consensus       138 ~~~~~~~~~~~~~s~~~l~~isidR  162 (162)
                      ++.    .++..+|++++++||+||
T Consensus       260 ~l~----~~~~~~S~~~l~~isidR  280 (514)
T 3sn6_R          260 SID----VLCVTASIETLCVIAVDR  280 (514)
T ss_dssp             HHH----HHHHHHHHHHHHHHHHHH
T ss_pred             HHH----HHHHHHHHHHHHHHHHHH
Confidence            988    899999999999999998

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=99.65  E-value=1.4e-16  Score=128.16  Aligned_cols=96  Identities=18%  Similarity=0.262  Sum_probs=83.7

Q ss_pred             hhHHHHHHHHHHHHHHhhhhheehh-eecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccchhhh
Q psy2990          58 QPMYGYVMPFLLLITIIANTLIVVV-LSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAW  136 (162)
Q Consensus        58 ~~~~~~~~~~i~~~gi~gN~~vl~v-~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~  136 (162)
                      ..+..+++.+++++|++||++++++ .++|++|+++|+|++|||++|++.+++.+|..+...  .  .|.+ +...|++.
T Consensus        31 ~~~~~~i~~~i~~~gi~gN~~vl~~~~~~~~l~~~~~~~l~~La~~Dll~~~~~~p~~~~~~--~--~~~~-~~~~C~~~  105 (447)
T 4eiy_A           31 SSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS--T--GFCA-ACHGCLFI  105 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHH--T--TCEE-EHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh--c--cccc-CccHHHHH
Confidence            3477889999999999999999864 678899999999999999999999999999877632  2  4434 88899999


Q ss_pred             hhHhhhhhhHHHHHHHHHHhhhhccC
Q psy2990         137 NIMNEVIPTLFHTASIWLTLALAVQR  162 (162)
Q Consensus       137 ~~~~~~~~~~~~~~s~~~l~~isidR  162 (162)
                      .++.    ..+..+|++++++||+||
T Consensus       106 ~~~~----~~~~~~S~~~l~~is~dR  127 (447)
T 4eiy_A          106 ACFV----LVLTQSSIFSLLAIAIDR  127 (447)
T ss_dssp             HHHH----HHHHHHHHHHHHHHHHHH
T ss_pred             HHHH----HHHHHHHHHHHHHHHHHH
Confidence            9988    899999999999999998

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=99.65  E-value=3.7e-16  Score=126.58  Aligned_cols=98  Identities=18%  Similarity=0.273  Sum_probs=85.0

Q ss_pred             hhHHHHHHHHHHHHHHhhhhheehh-eecCCCCChhHHHHHHHHHHHHHHHHh-hhhHHHHHHHhcCCccccccccchhh
Q psy2990          58 QPMYGYVMPFLLLITIIANTLIVVV-LSKRHMRTPTNAVLMAMALSDMFTLLF-PAPWLFYMYTFGNHYKPLSPVAACYA  135 (162)
Q Consensus        58 ~~~~~~~~~~i~~~gi~gN~~vl~v-~~~~~l~~~~~~~i~nLa~~Dll~~~~-~~p~~~~~~~~~~~~~~~~~~~~C~~  135 (162)
                      ..+..+++.+++++|++||++++++ .++|++|++.|++++|||++|++.+++ .+|..+.....+  .|.+ +...|++
T Consensus        34 ~~~~~i~~~ii~i~gi~gN~lvi~vi~~~~~~~~~~~~ll~~LaiaDll~~~~~~~p~~~~~~~~~--~~~~-~~~~C~~  110 (448)
T 2z73_A           34 YYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLK--KWIF-GFAACKV  110 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSTTHHHHHHHHHHHHHHHHHHSTTHHHHHHHTT--SCCS-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHHhhhhhhhccccCCccchHHHHHHHHHHHHHHHHhccHHHHHHhcC--CccC-CHHHHHH
Confidence            3467788999999999999999865 678889999999999999999999887 488887755544  6744 8899999


Q ss_pred             hhhHhhhhhhHHHHHHHHHHhhhhccC
Q psy2990         136 WNIMNEVIPTLFHTASIWLTLALAVQR  162 (162)
Q Consensus       136 ~~~~~~~~~~~~~~~s~~~l~~isidR  162 (162)
                      ..++.    ..+..+|++++++||+||
T Consensus       111 ~~~~~----~~~~~~S~~~l~~isidR  133 (448)
T 2z73_A          111 YGFIG----GIFGFMSIMTMAMISIDR  133 (448)
T ss_dssp             HHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH----HHHHHHHHHHHHHHHHHH
Confidence            99888    899999999999999998

>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A

Probab=97.10  E-value=4e-05  Score=45.80  Aligned_cols=27  Identities=15%  Similarity=0.323  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHhhhhheehhe-ecC
Q psy2990          60 MYGYVMPFLLLITIIANTLIVVVL-SKR   86 (162)
Q Consensus        60 ~~~~~~~~i~~~gi~gN~~vl~v~-~~~   86 (162)
                      +..++|.+++++|++||++++|++ ++|
T Consensus        30 ~lp~~Y~lvFvlGl~GN~lvl~v~~~~~   57 (64)
T 2lot_A           30 LIPAIYMLVFLLGTTGNGLVLWTVFRKK   57 (64)
T ss_dssp             SSHHHHHHTTTTTTTSSSSHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHhhhhhheeeeeEec
Confidence            667799999999999999999874 444

>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A

Probab=92.80  E-value=0.03  Score=27.81  Aligned_cols=13  Identities=31%  Similarity=0.353  Sum_probs=12.1

Q ss_pred             HHHHHHhhhhccC
Q psy2990         150 ASIWLTLALAVQR  162 (162)
Q Consensus       150 ~s~~~l~~isidR  162 (162)
                      +|+++|++||+||
T Consensus         2 ~Si~~L~~is~dR   14 (32)
T 1hll_A            2 SSIVHLCAISLDR   14 (32)
T ss_dssp             HHHHHHHHHHTHH
T ss_pred             cHHHHHHHHHHHH
Confidence            6899999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	162
d1u19a_	348	f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId:	3e-07

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.5 bits (109), Expect = 3e-07
 Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 6/109 (5%)

Query: 17  MTTTEILNASISPSNMTGLADDMMQGFDYLNISTELPIRYAQPMYGYVMPFLLLITIIAN 76
           M  TE  N  +  SN TG+     +   Y      L   +   M    M  L+++    N
Sbjct: 1   MNGTEGPNFYVPFSNKTGVVRSPFEAPQY-----YLAEPWQFSMLAAYMFLLIMLGFPIN 55

Query: 77  TL-IVVVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHY 124
            L + V +  + +RTP N +L+ +A++D+F +        Y    G   
Sbjct: 56  FLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFV 104

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	162
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	99.77

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.77  E-value=7.8e-19  Score=135.49  Aligned_cols=134  Identities=25%  Similarity=0.352  Sum_probs=106.2

Q ss_pred             ccccccccccCCCCCCCCCcccccCCccccccCCCCccchhhhHHHHHHHHHHHHHHhhhhheehh-eecCCCCChhHHH
Q psy2990          17 MTTTEILNASISPSNMTGLADDMMQGFDYLNISTELPIRYAQPMYGYVMPFLLLITIIANTLIVVV-LSKRHMRTPTNAV   95 (162)
Q Consensus        17 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gi~gN~~vl~v-~~~~~l~~~~~~~   95 (162)
                      |..+++++...+.++.++..+.+.+..+...     ..++...+.++++.+++++|++||++++++ +++|++|++.|++
T Consensus         1 ~~~~~~~~~~~~~~n~t~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ii~v~gi~gN~lvi~vi~~~k~lr~~~~~~   75 (348)
T d1u19a_           1 MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYL-----AEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYI   75 (348)
T ss_dssp             CCSEECSSCEESSCCTTSCCCCTTTSCCTTT-----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHH
T ss_pred             CCCCCCCCccccCCCCCCCcCCCCCCCcccc-----ccHHHHHHHHHHHHHHHHHHHHHHHHeehhhhccCCCCCHhHHH
Confidence            3455666666777777766655554443322     334444578889999999999999999865 6889999999999


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccchhhhhhHhhhhhhHHHHHHHHHHhhhhccC
Q psy2990          96 LMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR  162 (162)
Q Consensus        96 i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~s~~~l~~isidR  162 (162)
                      +.|||++|++.++...|..+.....+  .|+. +...|+...++.    ..+..+|+++++++++||
T Consensus        76 l~nLaiaDll~~~~~~~~~~~~~~~~--~~~~-~~~~c~~~~~~~----~~~~~~s~~~l~~is~~R  135 (348)
T d1u19a_          76 LLNLAVADLFMVFGGFTTTLYTSLHG--YFVF-GPTGCNLEGFFA----TLGGEIALWSLVVLAIER  135 (348)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHHT--SCTT-HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhccC--cccc-Cchhhhhhhhcc----ccceeeecchhhhhhccc
Confidence            99999999999998899888766555  5544 788999999888    889999999999999998