Psyllid ID: psy2993

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-------
Protein Sequence
MRAHLPLTRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNENGPHCLDNIDSHRSTAGRLCLDTP
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccHHHHHHHHHHHHHHcHccccccccccccccEEccccc
Coil and Loop (DISEMBL)
mrahlpltrnepSTIAVLMAMALSDMFTllfpapwlfymytfgnhykplspvAACYAWNimnengphcldnidshrstagrlcldtp
Flexible Loop (DISEMBL)
mrahlpltrnepSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNENGPHCLDNIDSHrstagrlcldtp
Low Complexity Region (SEG)
MRAHLPLTRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNENGPHCLDNIDSHRSTAGRLCLDTP
Disordered region (IsUnstruct)
*************TIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNENGPHCLDNI***************
Disordered Region (DISOPRED)
********RNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNENGPHCLDNIDSHRSTAGRLCLD**
Disordered Region (DISEMBL)
MRAHLPLTRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNENGPHCLDNIDSHRSTAGRLCLDTP
Disordered Region (DISPRO)
****LPLTRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNENGPHCLDNIDSHRSTAGRLCLD**
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRAHLPLTRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNENGPHCLDNIDSHRSTAGRLCLDTP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
341575566	398	sex peptide receptor [Bemisia tabaci]	0.586	0.128	0.901	2e-19
341575564	399	sex peptide receptor [Lygus hesperus]	0.609	0.132	0.867	6e-19
168823423	406	sex peptide receptor [Bombyx mori] gi|15	0.609	0.130	0.849	3e-18
242006557	352	class A rhodopsin-like G-protein coupled	0.574	0.142	0.86	4e-18
449143233	421	sex peptide receptor [Spodoptera litura]	0.609	0.125	0.830	1e-17
383793872	424	sex peptide receptor [Helicoverpa assult	0.609	0.125	0.830	1e-17
307006411	424	sex peptide receptor [Helicoverpa armige	0.609	0.125	0.830	1e-17
193712541	398	PREDICTED: FMRFamide receptor-like [Acyr	0.609	0.133	0.811	2e-17
357624630	423	sex peptide receptor [Danaus plexippus]	0.609	0.125	0.811	4e-17
158991491	511	sex peptide receptor [Aedes aegypti]	0.574	0.097	0.78	4e-16

>gi|341575566|gb|AEK80440.1| sex peptide receptor [Bemisia tabaci]

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/51 (90%), Positives = 47/51 (92%)

Query: 16  AVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNENGP 66
           AVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPV ACYA+ IMNE  P
Sbjct: 84  AVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVGACYAYTIMNEVIP 134

Source: Bemisia tabaci

Species: Bemisia tabaci

Genus: Bemisia

Family: Aleyrodidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|341575564|gb|AEK80439.1| sex peptide receptor [Lygus hesperus]

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 46/53 (86%), Positives = 47/53 (88%)

Query: 14  TIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNENGP 66
           T AVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPV ACYAW  MN+  P
Sbjct: 83  TNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVGACYAWRAMNDIIP 135

Source: Lygus hesperus

Species: Lygus hesperus

Genus: Lygus

Family: Miridae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|168823423|ref|NP_001108346.1| sex peptide receptor [Bombyx mori] gi|158991495|gb|ABW86946.1| sex peptide receptor [Bombyx mori]

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/53 (84%), Positives = 46/53 (86%)

Query: 14  TIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNENGP 66
           T AVLMAMAL DMFT+LFPAPWLFYMYTFGNHYKPLSPV AC AWN MNE  P
Sbjct: 95  TNAVLMAMALCDMFTMLFPAPWLFYMYTFGNHYKPLSPVRACQAWNYMNEVIP 147

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242006557|ref|XP_002424116.1| class A rhodopsin-like G-protein coupled receptor GPRnna6, putative [Pediculus humanus corporis] gi|212507433|gb|EEB11378.1| class A rhodopsin-like G-protein coupled receptor GPRnna6, putative [Pediculus humanus corporis]

 Score = 95.1 bits (235), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 43/50 (86%), Positives = 44/50 (88%)

Query: 17 VLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNENGP 66
          VLM MALSDMFTLLFPAPWLFYMYTFGNHYKPL PVAACY WN M E+ P
Sbjct: 42 VLMVMALSDMFTLLFPAPWLFYMYTFGNHYKPLWPVAACYLWNAMKEDIP 91

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|449143233|gb|AGE92037.1| sex peptide receptor [Spodoptera litura]

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/53 (83%), Positives = 45/53 (84%)

Query: 14  TIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNENGP 66
           T  VLMAMAL DMFT+LFPAPWLFYMYTFGNHYKPLSPV AC AWN MNE  P
Sbjct: 110 TNVVLMAMALCDMFTMLFPAPWLFYMYTFGNHYKPLSPVRACQAWNYMNEVIP 162

Source: Spodoptera litura

Species: Spodoptera litura

Genus: Spodoptera

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383793872|gb|AFH53182.1| sex peptide receptor [Helicoverpa assulta]

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/53 (83%), Positives = 45/53 (84%)

Query: 14  TIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNENGP 66
           T  VLMAMAL DMFT+LFPAPWLFYMYTFGNHYKPLSPV AC AWN MNE  P
Sbjct: 113 TNVVLMAMALCDMFTMLFPAPWLFYMYTFGNHYKPLSPVRACQAWNYMNEVIP 165

Source: Helicoverpa assulta

Species: Helicoverpa assulta

Genus: Helicoverpa

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307006411|gb|ADK79103.2| sex peptide receptor [Helicoverpa armigera]

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/53 (83%), Positives = 45/53 (84%)

Query: 14  TIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNENGP 66
           T  VLMAMAL DMFT+LFPAPWLFYMYTFGNHYKPLSPV AC AWN MNE  P
Sbjct: 113 TNVVLMAMALCDMFTMLFPAPWLFYMYTFGNHYKPLSPVRACQAWNYMNEVIP 165

Source: Helicoverpa armigera

Species: Helicoverpa armigera

Genus: Helicoverpa

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193712541|ref|XP_001944453.1| PREDICTED: FMRFamide receptor-like [Acyrthosiphon pisum]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/53 (81%), Positives = 45/53 (84%)

Query: 14  TIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNENGP 66
           T  VLM+MALSDMFTLLFPAPWLFYMYT GNHYKPLSPV +CYAW  MNE  P
Sbjct: 82  TNVVLMSMALSDMFTLLFPAPWLFYMYTLGNHYKPLSPVESCYAWYAMNEVIP 134

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357624630|gb|EHJ75336.1| sex peptide receptor [Danaus plexippus]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 43/53 (81%), Positives = 45/53 (84%)

Query: 14  TIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNENGP 66
           T  VLMAMAL DMFT+LFPAPWLFYMYTFGNHYKPLSPV AC AW+ MNE  P
Sbjct: 113 TNVVLMAMALCDMFTMLFPAPWLFYMYTFGNHYKPLSPVHACQAWHYMNEVIP 165

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158991491|gb|ABW86944.1| sex peptide receptor [Aedes aegypti]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/50 (78%), Positives = 43/50 (86%)

Query: 17  VLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNENGP 66
           VLMAMAL DMFTL+FPAP L YMYTFGNHYKPLSP+ ACY WN +NE+ P
Sbjct: 198 VLMAMALCDMFTLIFPAPGLLYMYTFGNHYKPLSPITACYVWNALNEHLP 247

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
FB|FBgn0029768	435	SPR "Sex peptide receptor" [Dr	0.574	0.114	0.66	1.7e-13

FB|FBgn0029768 SPR "Sex peptide receptor" [Drosophila melanogaster (taxid:7227)]

 Score = 183 (69.5 bits), Expect = 1.7e-13, P = 1.7e-13
 Identities = 33/50 (66%), Positives = 40/50 (80%)

Query:    17 VLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNENGP 66
             VLM MA+ DM T++FPAP L+YMYTFGNHYKPL PV+ C A++I NE  P
Sbjct:   126 VLMGMAICDMLTVIFPAPGLWYMYTFGNHYKPLHPVSMCLAYSIFNEIMP 175


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.137   0.463    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       87        87   0.00091  102 3  11 22  0.40    29
                                                     29  0.48    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  557 (59 KB)
  Total size of DFA:  125 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.39u 0.08s 9.47t   Elapsed:  00:00:22
  Total cpu time:  9.39u 0.08s 9.47t   Elapsed:  00:00:22
  Start:  Thu Aug 15 12:31:36 2013   End:  Thu Aug 15 12:31:58 2013

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0048042 "regulation of post-mating oviposition" evidence=IMP

GO:0008188 "neuropeptide receptor activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0045434 "negative regulation of female receptivity, post-mating" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	87
PHA03234	338	DNA packaging protein UL33; Provisional	98.74
KOG4219|consensus	423		98.73
KOG4220|consensus	503		98.4
PF00001	257	7tm_1: 7 transmembrane receptor (rhodopsin family)	98.33
PF10324	318	7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept	98.32
PHA02638	417	CC chemokine receptor-like protein; Provisional	98.02
PHA02834	323	chemokine receptor-like protein; Provisional	97.95
PHA03087	335	G protein-coupled chemokine receptor-like protein;	97.33
PHA03235	409	DNA packaging protein UL33; Provisional	97.33
PF10320	257	7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep	93.84
PF03402	265	V1R: Vomeronasal organ pheromone receptor family,	82.91

>PHA03234 DNA packaging protein UL33; Provisional

Probab=98.74  E-value=2.2e-08  Score=77.28  Aligned_cols=51  Identities=14%  Similarity=0.087  Sum_probs=39.6

Q ss_pred             CcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCchhHHHHHHHHH
Q psy2993           7 LTRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMN   62 (87)
Q Consensus         7 ~~~MrTptN~~L~nmAvaDllv~l~~~P~~i~~~~~g~~~~~~g~~~~Cy~~~~~h   62 (87)
                      +++|||+||++++|||+||+++++...|+..+ .   ...|++|+ ..||.+.++.
T Consensus        62 ~~~~rt~tn~fi~NLAvaDLL~~l~lp~~~~~-~---~~~w~fG~-~lCk~~~~~~  112 (338)
T PHA03234         62 KVAKHNATSFYLITLFASDFLHMLCVFFLTLN-R---EALFNFNQ-AFCQCVLFIY  112 (338)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHHHHHHH-H---hCCccCch-hHHHHHHHHH
Confidence            46789999999999999999998765444333 2   23589997 9999988833

>KOG4219|consensus

Probab=98.73  E-value=9.1e-09  Score=84.33  Aligned_cols=53  Identities=19%  Similarity=0.172  Sum_probs=46.4

Q ss_pred             CCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCchhHHHHHHH
Q psy2993           5 LPLTRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNI   60 (87)
Q Consensus         5 ~~~~~MrTptN~~L~nmAvaDllv~l~~~P~~i~~~~~g~~~~~~g~~~~Cy~~~~   60 (87)
                      +.-|+|||.|||+|+|||+||++.++|..|+.+-+..+  ..|.+|. .+|+..++
T Consensus        61 l~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~--~~W~~G~-f~C~f~nf  113 (423)
T KOG4219|consen   61 LAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALH--QEWYFGS-FYCRFVNF  113 (423)
T ss_pred             eehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--hcccccc-ceeeeccc
Confidence            46799999999999999999999999999988774433  5799997 89999988

>KOG4220|consensus

Probab=98.40  E-value=1.9e-07  Score=77.72  Aligned_cols=58  Identities=21%  Similarity=0.338  Sum_probs=50.2

Q ss_pred             CcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCchhHHHHHHHHHhhhhh
Q psy2993           7 LTRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNENGPH   67 (87)
Q Consensus         7 ~~~MrTptN~~L~nmAvaDllv~l~~~P~~i~~~~~g~~~~~~g~~~~Cy~~~~~h~vf~~   67 (87)
                      -|+++|.-||||++||+||++++.+.||.+.. |+..+ +|++|+ ..|..|..+.-+-++
T Consensus        58 nrqLqTVnNYfLfSLAcADliIG~~SMnl~t~-Y~lmg-~W~LG~-~~CdlWLalDYvaSN  115 (503)
T KOG4220|consen   58 NRQLQTVNNYFLFSLACADLIIGAFSMNLYTT-YTLMG-YWPLGP-LVCDLWLALDYVASN  115 (503)
T ss_pred             cceeeeecceeehHHHHhhhhhheeechHHHH-HHHHc-ccccch-HHHHHHHHHHHHhhh
Confidence            47889999999999999999999999999998 77655 699998 999999886655443

>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.33  E-value=2.4e-06  Score=57.69  Aligned_cols=54  Identities=19%  Similarity=0.276  Sum_probs=42.6

Q ss_pred             CCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCchhHHHHHHHHH
Q psy2993           6 PLTRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMN   62 (87)
Q Consensus         6 ~~~~MrTptN~~L~nmAvaDllv~l~~~P~~i~~~~~g~~~~~~g~~~~Cy~~~~~h   62 (87)
                      .+|++|+++|++++|||++|+++.+...|..+.... . ..|..+. ..|+.+.++.
T Consensus        11 ~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~-~-~~~~~~~-~~C~~~~~~~   64 (257)
T PF00001_consen   11 RSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLL-F-DDWIFSS-FLCRIFGFLF   64 (257)
T ss_dssp             HSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHH-H-SSCTSHH-HHHHHHHHHH
T ss_pred             hhccCCChhHHHHHHHHHHHHhhccccccccccccc-c-ccccccc-cccccccccc
Confidence            357889999999999999999999999998887333 2 4566665 8999887743

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....

>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.32  E-value=1.5e-06  Score=64.74  Aligned_cols=70  Identities=14%  Similarity=0.251  Sum_probs=48.9

Q ss_pred             CCCcccch-hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh-cCCCCCCchh-HHHHHHHHHhhhhhhhhhhcc
Q psy2993           5 LPLTRNEP-STIAVLMAMALSDMFTLLFPAPWLFYMYTFG-NHYKPLSPVA-ACYAWNIMNENGPHCLDNIDS   74 (87)
Q Consensus         5 ~~~~~MrT-ptN~~L~nmAvaDllv~l~~~P~~i~~~~~g-~~~~~~g~~~-~Cy~~~~~h~vf~~~~HtiS~   74 (87)
                      |++|+||| |+|.+++++|++|++.++..++..+..+... +.++-.++.. ......++.+.++.++|++|.
T Consensus        21 Ltrk~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~l~~~~~~~S~   93 (318)
T PF10324_consen   21 LTRKSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMESLSDIFRRISI   93 (318)
T ss_pred             cCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999997 9999999999999999999999988634322 1222122211 222233377888888888774

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].

>PHA02638 CC chemokine receptor-like protein; Provisional

Probab=98.02  E-value=1.3e-05  Score=63.86  Aligned_cols=64  Identities=17%  Similarity=0.219  Sum_probs=47.1

Q ss_pred             CcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCchhHHHHHHH------HHhhhhhhhhhhccC
Q psy2993           7 LTRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNI------MNENGPHCLDNIDSH   75 (87)
Q Consensus         7 ~~~MrTptN~~L~nmAvaDllv~l~~~P~~i~~~~~g~~~~~~g~~~~Cy~~~~------~h~vf~~~~HtiS~~   75 (87)
                      +|++|+++|++++|||+||++.. +.+|+.++ +..  ..|.+|. ..||....      .-.++--+++++.|.
T Consensus       125 ~k~lrt~t~i~llnLAisDLl~~-l~lPf~i~-~~~--~~W~fg~-~~Ck~~~~l~~~~~~~Si~~L~~isiDRY  194 (417)
T PHA02638        125 CKKIKTITDIYIFNLAISDLIFV-IDFPFIIY-NEF--DQWIFGD-FMCKVISASYYIGFFSNMFLITLMSIDRY  194 (417)
T ss_pred             hccCCCHhHHHHHHHHHHHHHHH-HHHHHHHH-HHh--ccccccc-cchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47889999999999999999874 46797776 332  3688885 88988654      445566666766653

>PHA02834 chemokine receptor-like protein; Provisional

Probab=97.95  E-value=1.9e-05  Score=59.77  Aligned_cols=48  Identities=17%  Similarity=0.127  Sum_probs=36.2

Q ss_pred             CcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCchhHHHHHHH
Q psy2993           7 LTRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNI   60 (87)
Q Consensus         7 ~~~MrTptN~~L~nmAvaDllv~l~~~P~~i~~~~~g~~~~~~g~~~~Cy~~~~   60 (87)
                      ++++ +++|++++|||+||+++ ++.+|..++ ... + .|.+|+ ..|+...+
T Consensus        56 ~~~~-~~~n~~i~nLAiaDll~-~~~lP~~i~-~~~-~-~w~~g~-~~C~~~~~  103 (323)
T PHA02834         56 KRFM-FVVDVYLFNIAMSDLML-VFSFPFIIH-NDL-N-EWIFGE-FMCKLVLG  103 (323)
T ss_pred             cccc-chhhhhhHHHHHHHHHH-HHHHHHHHH-HHc-C-CcCCcc-hHHHhHHH
Confidence            3444 46899999999999986 567898776 332 2 588886 89998765

>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional

Probab=97.33  E-value=0.00088  Score=50.02  Aligned_cols=51  Identities=20%  Similarity=0.293  Sum_probs=37.3

Q ss_pred             CcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCchhHHHHHHHH
Q psy2993           7 LTRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIM   61 (87)
Q Consensus         7 ~~~MrTptN~~L~nmAvaDllv~l~~~P~~i~~~~~g~~~~~~g~~~~Cy~~~~~   61 (87)
                      ++++|+|+|+++.|||+||++..+. +|..++...  ...|.+++ ..|+...++
T Consensus        67 ~~~~~~~~~~ll~~laisDll~~~~-~~~~~~~~~--~~~~~~~~-~~C~~~~~~  117 (335)
T PHA03087         67 KTKIKTPMDIYLLNLAVSDLLFVMT-LPFQIYYYI--LFQWSFGE-FACKIVSGL  117 (335)
T ss_pred             hccccCchHHHHHHHHHHHHHHHHh-HHHHHHHHh--CCCCCCCc-HHHHHHHHH
Confidence            3478899999999999999987665 676654222  23466675 889877773

>PHA03235 DNA packaging protein UL33; Provisional

Probab=97.33  E-value=0.00028  Score=56.25  Aligned_cols=45  Identities=22%  Similarity=0.400  Sum_probs=31.9

Q ss_pred             chhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCC-chhHHHHHHHH
Q psy2993          11 EPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLS-PVAACYAWNIM   61 (87)
Q Consensus        11 rTptN~~L~nmAvaDllv~l~~~P~~i~~~~~g~~~~~~g-~~~~Cy~~~~~   61 (87)
                      ++++|++++|||+||+++ ++.+|+.+..    + .|.++ .+..|+.+.++
T Consensus        66 ~~~~~~~I~NLAvsDLl~-l~~lP~~i~~----~-~~~~~~g~~~Ck~~~~l  111 (409)
T PHA03235         66 FSTPTLYMTNLYLANLLT-VFVLPFIMLS----N-QGLLSGSVAGCKFASLL  111 (409)
T ss_pred             CCccHHHHHHHHHHHHHH-HHHHHHHHHh----c-CccccCCCCeehhHHHH
Confidence            467789999999999987 5678977652    1 24332 13789888773

>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=93.84  E-value=0.15  Score=37.90  Aligned_cols=51  Identities=14%  Similarity=0.374  Sum_probs=38.2

Q ss_pred             CCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCchhHHHHHHH
Q psy2993           5 LPLTRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNI   60 (87)
Q Consensus         5 ~~~~~MrTptN~~L~nmAvaDllv~l~~~P~~i~~~~~g~~~~~~g~~~~Cy~~~~   60 (87)
                      ...|++|||.++++..+|++|++..+..+|..+..  +++.  . .....|+...+
T Consensus        16 ~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~--~~~~--~-i~~~~Cf~~~~   66 (257)
T PF10320_consen   16 FRNKSLRSPCYILICILCFADLICLLGTLPFMLFL--FRDH--Q-ITRSECFWQIF   66 (257)
T ss_pred             HhccccccchHHHHHHHHHHHHHHHhhHHHHHHHH--Hhhe--e-ccHHHHHHHHH
Confidence            45789999999999999999999999988888752  2222  1 22357876544

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=82.91  E-value=1.3  Score=34.38  Aligned_cols=48  Identities=17%  Similarity=0.246  Sum_probs=33.4

Q ss_pred             hhHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhcCCCCCCchhHHHHHHHHHhh
Q psy2993          12 PSTIAVLMAMALSDMFTLLF-PAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEN   64 (87)
Q Consensus        12 TptN~~L~nmAvaDllv~l~-~~P~~i~~~~~g~~~~~~g~~~~Cy~~~~~h~v   64 (87)
                      .|++.+|..||+|+.++.++ ++|........    +.++ +..||...|.|-+
T Consensus         9 kp~dlIl~hLa~aN~lvLl~rGip~~~~~~~~----~~~~-d~gCK~v~Y~~RV   57 (265)
T PF03402_consen    9 KPIDLILIHLALANILVLLSRGIPQTMAFFGW----KFFD-DIGCKIVFYIYRV   57 (265)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhHHHHHHHhhc----ccCC-CceeeeeeeehHH
Confidence            59999999999999999887 78865442221    1233 4678777664443

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	87
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	99.04
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	98.75
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	98.72
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	98.66
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	98.64
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	98.6
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	98.59
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	98.59
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	98.58
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	98.58
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	98.57
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	98.46
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	98.46
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	98.45
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	98.44
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	98.44
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	98.33
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	98.24

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=99.04  E-value=2.1e-10  Score=88.05  Aligned_cols=57  Identities=23%  Similarity=0.405  Sum_probs=47.2

Q ss_pred             CcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCchhHHHHHHHHHhh
Q psy2993           7 LTRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEN   64 (87)
Q Consensus         7 ~~~MrTptN~~L~nmAvaDllv~l~~~P~~i~~~~~g~~~~~~g~~~~Cy~~~~~h~v   64 (87)
                      .|+|+|++|++|+|||+||++++++.+|+.++.+......|++|. ..|+.+.++..+
T Consensus        63 ~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~~~w~~g~-~~C~~~~~~~~~  119 (510)
T 4grv_A           63 LQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFGD-AGCRGYYFLRDA  119 (510)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCSSHH-HHHHHHHHHHHH
T ss_pred             CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEhhH-HHHHHHHHHHHH
Confidence            356789999999999999999999999999885555667799986 999999885443

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=98.75  E-value=1.8e-08  Score=70.56  Aligned_cols=53  Identities=17%  Similarity=0.127  Sum_probs=41.1

Q ss_pred             CcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCchhHHHHHHHHHhh
Q psy2993           7 LTRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEN   64 (87)
Q Consensus         7 ~~~MrTptN~~L~nmAvaDllv~l~~~P~~i~~~~~g~~~~~~g~~~~Cy~~~~~h~v   64 (87)
                      .|++|||+|++++|||+||+++++. +|.......   ..|..|. ..|+.+.++...
T Consensus        39 ~~~lrt~~n~~i~nLAvaDll~~l~-~p~~~~~~~---~~~~~~~-~~c~~~~~~~~~   91 (296)
T 2lnl_A           39 SRVGRSVTDVYLLNLALADLLFALT-LPIWAASKV---NGWIFGT-FLCKVVSLLKEV   91 (296)
T ss_dssp             CTTCCSTTHHHHHHHHHHHHHHHHH-HHHHHHHHH---SSSCCSS-HHHHHHHHHHHH
T ss_pred             ccCCCChHHHHHHHHHHHHHHHHHh-hhHHHhhcc---CCCccch-hHHHHHhhhhhh
Confidence            5789999999999999999999876 565555232   2588886 899998875443

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=98.72  E-value=3e-08  Score=72.98  Aligned_cols=55  Identities=15%  Similarity=0.333  Sum_probs=45.5

Q ss_pred             CcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCchhHHHHHHHHHh
Q psy2993           7 LTRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNE   63 (87)
Q Consensus         7 ~~~MrTptN~~L~nmAvaDllv~l~~~P~~i~~~~~g~~~~~~g~~~~Cy~~~~~h~   63 (87)
                      .+++|+|+|++|+|||+||++++++.+|+.++ ..+.+..|.++. ..|+...++..
T Consensus        66 ~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~-~~~~~~~~~~~~-~~C~~~~~~~~  120 (481)
T 3pbl_A           66 ERALQTTTNYLVVSLAVADLLVATLVMPWVVY-LEVTGGVWNFSR-ICCDVFVTLDV  120 (481)
T ss_dssp             CSTTCSHHHHHHHHHHHHHHHHHHHTHHHHHH-HHHTTSCCCSCH-HHHHHHHHHHH
T ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCccccCc-chhhhHHHHHH
Confidence            47789999999999999999999999999888 433445688886 89999887443

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=98.66  E-value=4.2e-08  Score=74.56  Aligned_cols=54  Identities=15%  Similarity=0.175  Sum_probs=44.5

Q ss_pred             CcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCchhHHHHHHHHHh
Q psy2993           7 LTRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNE   63 (87)
Q Consensus         7 ~~~MrTptN~~L~nmAvaDllv~l~~~P~~i~~~~~g~~~~~~g~~~~Cy~~~~~h~   63 (87)
                      .+++|+|+|++|+|||+||++++++.+|+.+.....  ..|.++. ..|+.+.++..
T Consensus        68 ~~~l~~~~~~~l~nLAiaDll~~~~~~p~~~~~~~~--~~w~~~~-~~C~~~~~~~~  121 (500)
T 2rh1_A           68 FERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM--KMWTFGN-FWCEFWTSIDV  121 (500)
T ss_dssp             CGGGCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH--TSCCSHH-HHHHHHHHHHH
T ss_pred             cCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcCCc-chhhHHHHHHH
Confidence            568999999999999999999999999998874432  3588886 89998877443

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=98.64  E-value=5.5e-08  Score=71.12  Aligned_cols=54  Identities=19%  Similarity=0.324  Sum_probs=44.5

Q ss_pred             CcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCchhHHHHHHHHHh
Q psy2993           7 LTRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNE   63 (87)
Q Consensus         7 ~~~MrTptN~~L~nmAvaDllv~l~~~P~~i~~~~~g~~~~~~g~~~~Cy~~~~~h~   63 (87)
                      .+++|+|+|++|+|||+||++++++.+|..+.....  ..|.++. ..|+.+.++..
T Consensus        51 ~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~--~~~~~~~-~~C~~~~~~~~  104 (467)
T 3uon_A           51 NRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVI--GYWPLGP-VVCDLWLALDY  104 (467)
T ss_dssp             CGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHHHS--SSCCSCH-HHHHHHHHHHH
T ss_pred             cCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCccCCc-chHhHHHHHHH
Confidence            467899999999999999999999999998874432  2688886 89999887443

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=98.60  E-value=5.8e-08  Score=66.86  Aligned_cols=53  Identities=15%  Similarity=0.181  Sum_probs=43.7

Q ss_pred             CcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCchhHHHHHHHHH
Q psy2993           7 LTRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMN   62 (87)
Q Consensus         7 ~~~MrTptN~~L~nmAvaDllv~l~~~P~~i~~~~~g~~~~~~g~~~~Cy~~~~~h   62 (87)
                      +|++|+|+|+++.|||+||++++++.+|..+.....  ..|.++. ..|+.+.++.
T Consensus        39 ~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~--~~~~~~~-~~C~~~~~~~   91 (315)
T 4amj_A           39 TQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVR--GTWLWGS-FLCELWTSLD   91 (315)
T ss_dssp             CGGGCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH--SSCCSCH-HHHHHHHHHH
T ss_pred             chhhcchHHHHHHHHHHHHHHHHHHhccHHHHHHhc--CCeeccc-cHHHHHHHHH
Confidence            577899999999999999999999999988874432  2577786 8999987743

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=98.59  E-value=6.1e-08  Score=70.59  Aligned_cols=54  Identities=11%  Similarity=0.138  Sum_probs=44.6

Q ss_pred             CcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCchhHHHHHHHHHh
Q psy2993           7 LTRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNE   63 (87)
Q Consensus         7 ~~~MrTptN~~L~nmAvaDllv~l~~~P~~i~~~~~g~~~~~~g~~~~Cy~~~~~h~   63 (87)
                      .+++|+|+|++|+|||+||++++++.+|..+.... . ..|.++. ..|+.+.++..
T Consensus        36 ~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~-~-~~~~~~~-~~C~~~~~~~~   89 (452)
T 3rze_A           36 ERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLL-M-SKWSLGR-PLCLFWLSMDY   89 (452)
T ss_dssp             CSTTCCGGGHHHHHHHHHHHHHHHTHHHHHHHHHH-S-SSCSSHH-HHHHHHHHHHH
T ss_pred             ccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-c-CCccCCc-hhHhHHHHHHH
Confidence            46789999999999999999999999999988443 2 3678776 89999887443

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=98.59  E-value=1.3e-07  Score=66.49  Aligned_cols=54  Identities=15%  Similarity=0.257  Sum_probs=43.6

Q ss_pred             CcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCchhHHHHHHHHHh
Q psy2993           7 LTRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNE   63 (87)
Q Consensus         7 ~~~MrTptN~~L~nmAvaDllv~l~~~P~~i~~~~~g~~~~~~g~~~~Cy~~~~~h~   63 (87)
                      +|++|+|+|++++|||+||+++++..+|..+..... + .|.++. ..|+...++..
T Consensus        66 ~~~~~~~~~~ll~~Lai~Dll~~~~~~~~~~~~~~~-~-~~~~~~-~~C~~~~~~~~  119 (349)
T 1u19_A           66 HKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLH-G-YFVFGP-TGCNLEGFFAT  119 (349)
T ss_dssp             STTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH-T-SCTTHH-HHHHHHHHHHH
T ss_pred             hhhhcCchhHHHHHHHHHHHHHHHhcchHHHHHHhc-C-eeeCCh-hHHHHHHHHHH
Confidence            578899999999999999999999999998874432 2 477775 89998877443

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=98.58  E-value=1.6e-07  Score=68.31  Aligned_cols=54  Identities=19%  Similarity=0.244  Sum_probs=43.4

Q ss_pred             CcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCchhHHHHHHHHHhh
Q psy2993           7 LTRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEN   64 (87)
Q Consensus         7 ~~~MrTptN~~L~nmAvaDllv~l~~~P~~i~~~~~g~~~~~~g~~~~Cy~~~~~h~v   64 (87)
                      .+++|+|+|++++|||+||+++++. +|..+..+..+  .|.++. ..|+.+.++..+
T Consensus        45 ~~~~~~~~~~~l~~La~~Dll~~~~-~p~~~~~~~~~--~~~~~~-~~C~~~~~~~~~   98 (464)
T 4dkl_A           45 YTKMKTATNIYIFNLALADALATST-LPFQSVNYLMG--TWPFGN-ILCKIVISIDYY   98 (464)
T ss_dssp             CSTTCSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHS--SCCSCS-HHHHHHHHHHHH
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhC--Cccccc-chhhhHHHHHHH
Confidence            4678999999999999999999888 88887744432  588886 899998874433

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=98.58  E-value=1.2e-07  Score=69.73  Aligned_cols=55  Identities=9%  Similarity=0.132  Sum_probs=42.2

Q ss_pred             CcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCchhHHHHHHHHHhh
Q psy2993           7 LTRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEN   64 (87)
Q Consensus         7 ~~~MrTptN~~L~nmAvaDllv~l~~~P~~i~~~~~g~~~~~~g~~~~Cy~~~~~h~v   64 (87)
                      .+++|+|+|++|+|||+||+++++. +|..+.... ....|.++. ..|+.+.++..+
T Consensus        48 ~~~l~~~~~~~l~~La~aDll~~~~-~~~~~~~~~-~~~~~~~~~-~~C~~~~~~~~~  102 (484)
T 3vw7_A           48 KMKVKKPAVVYMLHLATADVLFVSV-LPFKISYYF-SGSDWQFGS-ELCRFVTAAFYC  102 (484)
T ss_dssp             HGGGCCHHHHHHHHHHHHHHHHHTT-HHHHHHHHH-TTSCCCSCH-HHHHHHHHHHHH
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-hcCCcccch-hHHhHHHHHHHH
Confidence            4678999999999999999999776 565555243 344688886 999998875443

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=98.57  E-value=1.7e-07  Score=66.78  Aligned_cols=53  Identities=15%  Similarity=0.045  Sum_probs=43.2

Q ss_pred             CcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCchhHHHHHHHHH
Q psy2993           7 LTRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMN   62 (87)
Q Consensus         7 ~~~MrTptN~~L~nmAvaDllv~l~~~P~~i~~~~~g~~~~~~g~~~~Cy~~~~~h   62 (87)
                      +|++|+|+|++++|||+||++++++.+|..+.....  ..|.++. ..|+...++.
T Consensus        60 ~~~l~~~~~~~l~~LaiaDll~~~~~~p~~~~~~~~--~~~~~~~-~~C~~~~~~~  112 (364)
T 2ks9_A           60 HKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVH--NEWYYGL-FYCKFHNFFP  112 (364)
T ss_dssp             CTTCCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH--TSCSSCH-HHHHHHHHHH
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCccchH-HHHHhHHHHH
Confidence            578899999999999999999999999988773332  2577775 8999887743

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=98.46  E-value=2.1e-07  Score=67.64  Aligned_cols=52  Identities=10%  Similarity=0.020  Sum_probs=41.6

Q ss_pred             CcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCchhHHHHHHHHHh
Q psy2993           7 LTRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNE   63 (87)
Q Consensus         7 ~~~MrTptN~~L~nmAvaDllv~l~~~P~~i~~~~~g~~~~~~g~~~~Cy~~~~~h~   63 (87)
                      .+++|+|+|++|+|||+||++++++.+|..+..+ .   .|..+. ..|+...++..
T Consensus        59 ~~~l~~~~~~~l~~La~~Dll~~~~~~p~~~~~~-~---~~~~~~-~~C~~~~~~~~  110 (447)
T 4eiy_A           59 NSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS-T---GFCAAC-HGCLFIACFVL  110 (447)
T ss_dssp             CGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHH-T---TCEEEH-HHHHHHHHHHH
T ss_pred             ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c---ccccCc-cHHHHHHHHHH
Confidence            5678999999999999999999999999888732 2   455554 78998877543

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=98.46  E-value=2.4e-07  Score=70.38  Aligned_cols=54  Identities=15%  Similarity=0.141  Sum_probs=44.5

Q ss_pred             CcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCchhHHHHHHHHHh
Q psy2993           7 LTRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNE   63 (87)
Q Consensus         7 ~~~MrTptN~~L~nmAvaDllv~l~~~P~~i~~~~~g~~~~~~g~~~~Cy~~~~~h~   63 (87)
                      .+++|+|+|++|+|||+||++++++.+|..+.....  ..|.++. ..|+.+.++..
T Consensus       210 ~~~lr~~~~~ll~nLAiaDll~~~~~~p~~~~~~~~--~~~~~~~-~~C~~~~~l~~  263 (514)
T 3sn6_R          210 FERLQTVTNYFITSLACADLVMGLAVVPFGAAHILT--KTWTFGN-FWCEFWTSIDV  263 (514)
T ss_dssp             CGGGCCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHH--TSCCSCS-HHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHhCHHHHHHHHc--CCeeCCc-chhhhHHHHHH
Confidence            577899999999999999999999999998874432  2578886 89998887443

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=98.45  E-value=2.7e-07  Score=70.75  Aligned_cols=52  Identities=17%  Similarity=0.131  Sum_probs=41.8

Q ss_pred             CcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCchhHHHHHHHHH
Q psy2993           7 LTRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMN   62 (87)
Q Consensus         7 ~~~MrTptN~~L~nmAvaDllv~l~~~P~~i~~~~~g~~~~~~g~~~~Cy~~~~~h   62 (87)
                      .+++|+|+|++|+|||+||++++++.+|..+..   ....|.++. ..|+...++.
T Consensus        91 ~~~lr~~~~~~l~nLA~aDll~~~~~~p~~~~~---~~~~~~~~~-~~c~~~~~~~  142 (520)
T 3v2y_A           91 TKKFHRPMYYFIGNLALSDLLAGVAYTANLLLS---GATTYKLTP-AQWFLREGSM  142 (520)
T ss_dssp             CSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHS---GGGGTTSCH-HHHHHHHHHH
T ss_pred             CccccChHHHHHHHHHHHHHHHHHHHHHHHHHc---cccceeeCc-cccchHHHHH
Confidence            477999999999999999999999999988773   223466775 7888877643

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=98.44  E-value=2e-07  Score=68.33  Aligned_cols=51  Identities=10%  Similarity=0.040  Sum_probs=41.8

Q ss_pred             CcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCchhHHHHHHHHH
Q psy2993           7 LTRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMN   62 (87)
Q Consensus         7 ~~~MrTptN~~L~nmAvaDllv~l~~~P~~i~~~~~g~~~~~~g~~~~Cy~~~~~h   62 (87)
                      .+++|+|+|++|+|||+||++++++.+|..+. +..   .|..+. ..|+...++.
T Consensus        49 ~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~-~~~---~~~~~~-~~C~~~~~~~   99 (488)
T 3eml_A           49 NSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT-IST---GFCAAC-HGCLFIACFV   99 (488)
T ss_dssp             CGGGCSSHHHHHHHHHHHHHHHHHTHHHHHHH-HTT---CCEECH-HHHHHHHHHH
T ss_pred             ccccCChHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc---cccccc-hHHHHHHHHH
Confidence            46789999999999999999999999998887 322   466665 7899888744

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=98.44  E-value=4.3e-07  Score=67.13  Aligned_cols=54  Identities=9%  Similarity=0.076  Sum_probs=42.8

Q ss_pred             CCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCchhHHHHHHHHHhh
Q psy2993           6 PLTRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEN   64 (87)
Q Consensus         6 ~~~~MrTptN~~L~nmAvaDllv~l~~~P~~i~~~~~g~~~~~~g~~~~Cy~~~~~h~v   64 (87)
                      ..+++|+|+|++|+|||+||+++. +.+|..+.... +  .|.++. ..|+.+.++..+
T Consensus        75 ~~~~l~~~~~~~l~~La~~Dll~~-~~~p~~~~~~~-~--~~~~~~-~~C~~~~~~~~~  128 (502)
T 3odu_A           75 YQKKLRSMTDKYRLHLSVADLLFV-ITLPFWAVDAV-A--NWYFGN-FLCKAVHVIYTV  128 (502)
T ss_dssp             TTCCSCCHHHHHHHHHHHHHHHHH-TTHHHHHHHHH-T--CCCSHH-HHHHHHHHHHHH
T ss_pred             hcccCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHh-c--CCcCCc-hhhhhHHHHHHH
Confidence            457889999999999999999995 67898877343 2  588886 789998874433

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=98.24  E-value=1.6e-06  Score=64.11  Aligned_cols=52  Identities=15%  Similarity=0.182  Sum_probs=41.0

Q ss_pred             CcccchhHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHhcCCCCCCchhHHHHHHHH
Q psy2993           7 LTRNEPSTIAVLMAMALSDMFTLLFP-APWLFYMYTFGNHYKPLSPVAACYAWNIM   61 (87)
Q Consensus         7 ~~~MrTptN~~L~nmAvaDllv~l~~-~P~~i~~~~~g~~~~~~g~~~~Cy~~~~~   61 (87)
                      +|++|+++|++++|||+||++++++. +|..+.....  ..|.++. ..|+...++
T Consensus        62 ~~~~~~~~~~ll~~LaiaDll~~~~~~~p~~~~~~~~--~~~~~~~-~~C~~~~~~  114 (448)
T 2z73_A           62 TKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFL--KKWIFGF-AACKVYGFI  114 (448)
T ss_dssp             CSTTCSTTHHHHHHHHHHHHHHHHHHSTTHHHHHHHT--TSCCSHH-HHHHHHHHH
T ss_pred             ccccCCccchHHHHHHHHHHHHHHHHhccHHHHHHhc--CCccCCH-HHHHHHHHH
Confidence            57789999999999999999999875 8887763332  2577775 899988773

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	87
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	98.38

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.38  E-value=5.3e-07  Score=61.96  Aligned_cols=53  Identities=17%  Similarity=0.301  Sum_probs=41.5

Q ss_pred             CcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCchhHHHHHHHHH
Q psy2993           7 LTRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMN   62 (87)
Q Consensus         7 ~~~MrTptN~~L~nmAvaDllv~l~~~P~~i~~~~~g~~~~~~g~~~~Cy~~~~~h   62 (87)
                      .|++|+|+|++++|||+||+++++..+|..++....+  .|..++ ..|+...++.
T Consensus        65 ~k~lr~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~--~~~~~~-~~c~~~~~~~  117 (348)
T d1u19a_          65 HKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHG--YFVFGP-TGCNLEGFFA  117 (348)
T ss_dssp             STTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT--SCTTHH-HHHHHHHHHH
T ss_pred             cCCCCCHhHHHHHHHHHHHHHHHHHHHHHhhhhhccC--ccccCc-hhhhhhhhcc
Confidence            5789999999999999999999999999888744432  244444 7888777743