Psyllid ID: psy3012

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270--
MILEKLKSFLLNEISGKSLRKWADIVLNLIQRKELDLEKEITFAFNNSPPPIEVHVPINSIDEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDARELNGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFLPDSKLINFTKRRKVAEIISEIQQYQTQIFFLIQS
cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHccccccccc
cHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHcccccEEcccccccccccccccccccccEccccHHHHHHHHHHHHHHHHHcccHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEHHHHHHHHccccccccccccEcHHHHHHHHHHHHHHHHHHccccccccc
MILEKLKSFLLNEISGKSLRKWADIVLNLIQRKELDLEKEITfafnnspppievhvpinsidefnilIAHPVEIARQLTLLEFdyfrsvkpselvgsvwtkknkaeyspNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDARELNGDHFKKYQEKLrninppcipffgMYLTNILHieegnpdflpdsklinftkRRKVAEIISEIQQYQTQIFFLIQS
MILEKLKSFLLneisgkslrkWADIVLNLIQRKELDLEKEITFafnnspppiEVHVPINSIDEFNILIAHPVEIARQLTLLEFDYFRSVKpselvgsvwtkknkaeyspnlikIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDARELNGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFLPDSKLINFTKRRKVAEIISEIQQYQTQIFFLIQS
MILEKLKSFLLNEISGKSLRKWADIVLNLIQRKELDLEKEITFAFNNSPPPIEVHVPINSIDEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDARELNGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFLPDSKLINFTKRRKVAEIISEIQQYQTQIFFLIQS
*****LKSFLLNEISGKSLRKWADIVLNLIQRKELDLEKEITFAFNNSPPPIEVHVPINSIDEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDARELNGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFLPDSKLINFTKRRKVAEIISEIQQYQTQIFFLI**
MILEKLKSFLLNEIS***********************************************EFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDARELNGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFLPDSKLINFTKRRKVAEIISEIQQYQTQIFFL***
MILEKLKSFLLNEISGKSLRKWADIVLNLIQRKELDLEKEITFAFNNSPPPIEVHVPINSIDEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDARELNGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFLPDSKLINFTKRRKVAEIISEIQQYQTQIFFLIQS
MILEKLKSFLLNEISGKSLRKWADIVLNLIQRKELDLEKEITFAFNNSPPPIEVHVPINSIDEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDARELNGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFLPDSKLINFTKRRKVAEIISEIQQYQTQIFFL***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MILEKLKSFLLNEISGKSLRKWADIVLNLIQRKELDLEKEITFAFNNSPPPIEVHVPINSIDEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDARELNGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFLPDSKLINFTKRRKVAEIISEIQQYQTQIFFLIQS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query272 2.2.26 [Sep-21-2011]
P26675 1596 Protein son of sevenless yes N/A 0.981 0.167 0.630 1e-99
Q07889 1333 Son of sevenless homolog yes N/A 0.981 0.200 0.549 4e-83
Q02384 1333 Son of sevenless homolog yes N/A 0.981 0.200 0.553 5e-83
Q62245 1319 Son of sevenless homolog no N/A 0.981 0.202 0.545 9e-83
Q07890 1332 Son of sevenless homolog no N/A 0.981 0.200 0.553 6e-82
Q55GH91172 Ras guanine nucleotide ex yes N/A 0.720 0.167 0.361 2e-35
A2CEA71244 Ras-specific guanine nucl no N/A 0.683 0.149 0.366 3e-33
Q54FF31557 Ras guanine nucleotide ex no N/A 0.698 0.122 0.381 3e-33
P276711262 Ras-specific guanine nucl no N/A 0.724 0.156 0.348 3e-33
Q8IS14812 Ras guanine nucleotide ex no N/A 0.838 0.280 0.336 7e-32
>sp|P26675|SOS_DROME Protein son of sevenless OS=Drosophila melanogaster GN=Sos PE=1 SV=2 Back     alignment and function desciption
 Score =  362 bits (930), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 171/271 (63%), Positives = 221/271 (81%), Gaps = 4/271 (1%)

Query: 1    MILEKLKSFLLNEISGKSLRKWADIVLNLIQRK--ELDLEKEITFAFNNSPPPIEVHVPI 58
            M+LEKL +FL   ++GKS+RKW D VL ++QRK  +    K+I +A+ + PPPIE H+ +
Sbjct: 760  MLLEKLLNFL-EHVNGKSMRKWVDSVLKIVQRKNEQEKSNKKIVYAYGHDPPPIEHHLSV 818

Query: 59   NSIDEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHT 118
             + DE  +L  HP+E+ARQLTLLEF+ +++VKPSELVGS WTKK+K   SPNL+KIMKHT
Sbjct: 819  PN-DEITLLTLHPLELARQLTLLEFEMYKNVKPSELVGSPWTKKDKEVKSPNLLKIMKHT 877

Query: 119  TNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRF 178
            TN TRW+EK I EAEN++ERLAIM R IE+M+V+ +LNNFNG+L++ +AMG+A+VYRLR+
Sbjct: 878  TNVTRWIEKSITEAENYEERLAIMQRAIEVMMVMLELNNFNGILSIVAAMGTASVYRLRW 937

Query: 179  TFQALPTRLQKVLEDARELNGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFL 238
            TFQ LP R +K LE+ REL+ DH KKYQE+LR+INPPC+PFFG YLTNILH+EEGNPD L
Sbjct: 938  TFQGLPERYRKFLEECRELSDDHLKKYQERLRSINPPCVPFFGRYLTNILHLEEGNPDLL 997

Query: 239  PDSKLINFTKRRKVAEIISEIQQYQTQIFFL 269
             +++LINF+KRRKVAEII EIQQYQ Q + L
Sbjct: 998  ANTELINFSKRRKVAEIIGEIQQYQNQPYCL 1028
Promotes the exchange of Ras-bound GDP by GTP. Functions in signaling pathways initiated by the sevenless and epidermal growth factor receptor tyrosine kinases; implies a role for the ras pathway in neuronal development.
Drosophila melanogaster (taxid: 7227)
>sp|Q07889|SOS1_HUMAN Son of sevenless homolog 1 OS=Homo sapiens GN=SOS1 PE=1 SV=1 Back     alignment and function description
>sp|Q02384|SOS2_MOUSE Son of sevenless homolog 2 OS=Mus musculus GN=Sos2 PE=1 SV=2 Back     alignment and function description
>sp|Q62245|SOS1_MOUSE Son of sevenless homolog 1 OS=Mus musculus GN=Sos1 PE=1 SV=2 Back     alignment and function description
>sp|Q07890|SOS2_HUMAN Son of sevenless homolog 2 OS=Homo sapiens GN=SOS2 PE=1 SV=2 Back     alignment and function description
>sp|Q55GH9|GEFW_DICDI Ras guanine nucleotide exchange factor W OS=Dictyostelium discoideum GN=gefW PE=2 SV=1 Back     alignment and function description
>sp|A2CEA7|RGRF2_DANRE Ras-specific guanine nucleotide-releasing factor 2 OS=Danio rerio GN=rasgrf2 PE=3 SV=1 Back     alignment and function description
>sp|Q54FF3|GEFK_DICDI Ras guanine nucleotide exchange factor K OS=Dictyostelium discoideum GN=gefK PE=2 SV=1 Back     alignment and function description
>sp|P27671|RGRF1_MOUSE Ras-specific guanine nucleotide-releasing factor 1 OS=Mus musculus GN=Rasgrf1 PE=1 SV=2 Back     alignment and function description
>sp|Q8IS14|GEFJ_DICDI Ras guanine nucleotide exchange factor J OS=Dictyostelium discoideum GN=gefJ PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query272
322789169 1170 hypothetical protein SINV_03461 [Solenop 0.981 0.228 0.690 1e-105
332024491 1316 Protein son of sevenless [Acromyrmex ech 0.977 0.202 0.680 1e-104
307209796 1305 Protein son of sevenless [Harpegnathos s 0.977 0.203 0.676 1e-104
242014971 1507 ras GTP exchange factor, son of sevenles 0.970 0.175 0.691 1e-104
380022770 1343 PREDICTED: protein son of sevenless-like 0.981 0.198 0.671 1e-103
307176733 1286 Protein son of sevenless [Camponotus flo 0.977 0.206 0.683 1e-103
350403467 1344 PREDICTED: protein son of sevenless-like 0.977 0.197 0.674 1e-103
340722962 1344 PREDICTED: protein son of sevenless-like 0.977 0.197 0.674 1e-103
350403473 1328 PREDICTED: protein son of sevenless-like 0.977 0.200 0.674 1e-103
158299946 1552 AGAP009180-PA [Anopheles gambiae str. PE 0.981 0.172 0.644 1e-101
>gi|322789169|gb|EFZ14555.1| hypothetical protein SINV_03461 [Solenopsis invicta] Back     alignment and taxonomy information
 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/271 (69%), Positives = 230/271 (84%), Gaps = 4/271 (1%)

Query: 2   ILEKLKSFLLNEISGKSLRKWADIVLNLIQRK-ELDLEKEITFAFNNSPPPIEVHVPINS 60
           +LE+L+ FL + +SGKS+RKW D V+ ++QRK E   ++ ITF+F  SPPP+E H+ +  
Sbjct: 658 LLERLQLFL-DTVSGKSMRKWVDSVIKIVQRKCEPSEQRPITFSFERSPPPVEWHLKVPE 716

Query: 61  IDEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTN 120
            +E+ IL  HP+E+ARQLTLLEFD +R+VKPSELVGSVWTKK+K + SPNL+K++KHTTN
Sbjct: 717 -EEYGILTLHPIELARQLTLLEFDLYRTVKPSELVGSVWTKKDKEKTSPNLLKMIKHTTN 775

Query: 121 FTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTF 180
           FTRWLEK IVEAENFDERLAI++R IE+M+VLQ LNNFNGVLAV SAMGSA+V+RL+ TF
Sbjct: 776 FTRWLEKTIVEAENFDERLAIISRAIEVMMVLQDLNNFNGVLAVISAMGSASVFRLKCTF 835

Query: 181 QALPTRLQKVLEDARELNGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFLPD 240
           Q LP RL+K LE+ARELN DHF+KYQEKLR+INPPC+PFFGMYLTNILHIEEGN D+LP 
Sbjct: 836 QQLPARLEKALEEARELNNDHFRKYQEKLRSINPPCVPFFGMYLTNILHIEEGNSDYLPG 895

Query: 241 S-KLINFTKRRKVAEIISEIQQYQTQIFFLI 270
           S +LINF+KRRKVAEI  EIQQYQ Q + L+
Sbjct: 896 SPELINFSKRRKVAEITGEIQQYQNQPYCLL 926

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|332024491|gb|EGI64689.1| Protein son of sevenless [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307209796|gb|EFN86601.1| Protein son of sevenless [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|242014971|ref|XP_002428152.1| ras GTP exchange factor, son of sevenless, putative [Pediculus humanus corporis] gi|212512695|gb|EEB15414.1| ras GTP exchange factor, son of sevenless, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|380022770|ref|XP_003695210.1| PREDICTED: protein son of sevenless-like [Apis florea] Back     alignment and taxonomy information
>gi|307176733|gb|EFN66146.1| Protein son of sevenless [Camponotus floridanus] Back     alignment and taxonomy information
>gi|350403467|ref|XP_003486811.1| PREDICTED: protein son of sevenless-like isoform 1 [Bombus impatiens] Back     alignment and taxonomy information
>gi|340722962|ref|XP_003399868.1| PREDICTED: protein son of sevenless-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350403473|ref|XP_003486812.1| PREDICTED: protein son of sevenless-like isoform 2 [Bombus impatiens] Back     alignment and taxonomy information
>gi|158299946|ref|XP_319944.4| AGAP009180-PA [Anopheles gambiae str. PEST] gi|157013763|gb|EAA15144.4| AGAP009180-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query272
FB|FBgn0001965 1596 Sos "Son of sevenless" [Drosop 0.981 0.167 0.630 2.3e-90
ZFIN|ZDB-GENE-090319-5 1345 sos2 "son of sevenless homolog 0.985 0.199 0.56 5.5e-78
UNIPROTKB|F1N1J9 1304 Bt.110201 "Uncharacterized pro 0.981 0.204 0.569 9.9e-78
MGI|MGI:98355 1333 Sos2 "son of sevenless homolog 0.981 0.200 0.553 3.9e-77
UNIPROTKB|F1SHY0 1164 SOS2 "Uncharacterized protein" 0.981 0.229 0.556 8.7e-77
UNIPROTKB|D4A3T0 1317 Sos1 "Protein Sos1" [Rattus no 0.981 0.202 0.549 1.3e-76
UNIPROTKB|D4A0Q9 1319 Sos1 "Protein Sos1" [Rattus no 0.981 0.202 0.549 1.3e-76
UNIPROTKB|F1Q118 1310 SOS1 "Uncharacterized protein" 0.981 0.203 0.549 1.6e-76
UNIPROTKB|G5E9C8 1318 SOS1 "Son of sevenless homolog 0.981 0.202 0.549 1.6e-76
UNIPROTKB|F1N7C3 1333 SOS1 "Uncharacterized protein" 0.981 0.200 0.549 1.7e-76
FB|FBgn0001965 Sos "Son of sevenless" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 911 (325.7 bits), Expect = 2.3e-90, P = 2.3e-90
 Identities = 171/271 (63%), Positives = 221/271 (81%)

Query:     1 MILEKLKSFLLNEISGKSLRKWADIVLNLIQRK--ELDLEKEITFAFNNSPPPIEVHVPI 58
             M+LEKL +FL   ++GKS+RKW D VL ++QRK  +    K+I +A+ + PPPIE H+ +
Sbjct:   760 MLLEKLLNFL-EHVNGKSMRKWVDSVLKIVQRKNEQEKSNKKIVYAYGHDPPPIEHHLSV 818

Query:    59 NSIDEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHT 118
              + DE  +L  HP+E+ARQLTLLEF+ +++VKPSELVGS WTKK+K   SPNL+KIMKHT
Sbjct:   819 PN-DEITLLTLHPLELARQLTLLEFEMYKNVKPSELVGSPWTKKDKEVKSPNLLKIMKHT 877

Query:   119 TNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRF 178
             TN TRW+EK I EAEN++ERLAIM R IE+M+V+ +LNNFNG+L++ +AMG+A+VYRLR+
Sbjct:   878 TNVTRWIEKSITEAENYEERLAIMQRAIEVMMVMLELNNFNGILSIVAAMGTASVYRLRW 937

Query:   179 TFQALPTRLQKVLEDARELNGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFL 238
             TFQ LP R +K LE+ REL+ DH KKYQE+LR+INPPC+PFFG YLTNILH+EEGNPD L
Sbjct:   938 TFQGLPERYRKFLEECRELSDDHLKKYQERLRSINPPCVPFFGRYLTNILHLEEGNPDLL 997

Query:   239 PDSKLINFTKRRKVAEIISEIQQYQTQIFFL 269
              +++LINF+KRRKVAEII EIQQYQ Q + L
Sbjct:   998 ANTELINFSKRRKVAEIIGEIQQYQNQPYCL 1028
GO:0005515 "protein binding" evidence=IPI
GO:0007265 "Ras protein signal transduction" evidence=ISS
GO:0005088 "Ras guanyl-nucleotide exchange factor activity" evidence=ISS;NAS
GO:0008595 "anterior/posterior axis specification, embryo" evidence=TAS
GO:0008293 "torso signaling pathway" evidence=TAS
GO:0007399 "nervous system development" evidence=NAS
GO:0045500 "sevenless signaling pathway" evidence=TAS
GO:0007015 "actin filament organization" evidence=IMP
GO:0008360 "regulation of cell shape" evidence=IMP
GO:0005622 "intracellular" evidence=IEA
GO:0005543 "phospholipid binding" evidence=IEA
GO:0046982 "protein heterodimerization activity" evidence=IEA
GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA
GO:0003677 "DNA binding" evidence=IEA
GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA
GO:0045749 "negative regulation of S phase of mitotic cell cycle" evidence=IMP
GO:0007426 "tracheal outgrowth, open tracheal system" evidence=IMP
GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IMP
ZFIN|ZDB-GENE-090319-5 sos2 "son of sevenless homolog 2 (Drosophila)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1N1J9 Bt.110201 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:98355 Sos2 "son of sevenless homolog 2 (Drosophila)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SHY0 SOS2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|D4A3T0 Sos1 "Protein Sos1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|D4A0Q9 Sos1 "Protein Sos1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q118 SOS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|G5E9C8 SOS1 "Son of sevenless homolog 1 (Drosophila), isoform CRA_d" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1N7C3 SOS1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q02384SOS2_MOUSENo assigned EC number0.55310.98160.2003yesN/A
Q07889SOS1_HUMANNo assigned EC number0.54940.98160.2003yesN/A
P26675SOS_DROMENo assigned EC number0.63090.98160.1672yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query272
cd00155237 cd00155, RasGEF, Guanine nucleotide exchange facto 1e-61
pfam00617185 pfam00617, RasGEF, RasGEF domain 1e-61
smart00147242 smart00147, RasGEF, Guanine nucleotide exchange fa 6e-61
>gnl|CDD|238087 cd00155, RasGEF, Guanine nucleotide exchange factor for Ras-like small GTPases Back     alignment and domain information 
 Score =  194 bits (495), Expect = 1e-61
 Identities = 83/205 (40%), Positives = 138/205 (67%), Gaps = 6/205 (2%)

Query: 66  ILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEY-SPNLIKIMKHTTNFTRW 124
            L   P E+A QLTLL+F+ FR ++P EL+GS+W+KK+K  + SPNL + ++   N + W
Sbjct: 1   FLSLDPKELAEQLTLLDFELFRKIEPFELLGSLWSKKDKNIHLSPNLERFIERFNNLSNW 60

Query: 125 LEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALP 184
           +   I+   N  +R  ++++ I++    ++LNNFN ++A+ SA+ S+ + RL+ T++ L 
Sbjct: 61  VASEILLCTNPKKRARLLSKFIQVAKHCRELNNFNSLMAIVSALSSSPISRLKKTWEVLS 120

Query: 185 TRLQKVLEDAREL--NGDHFKKYQEKLRNI--NPPCIPFFGMYLTNILHIEEGNPDFLPD 240
           ++L+K+ E+  EL     +FK Y++ L+++  NPPC+PF G+YL ++  + EGNPDFL  
Sbjct: 121 SKLKKLFEELEELVDPSRNFKNYRKLLKSVGPNPPCVPFLGVYLKDLTFLHEGNPDFLEG 180

Query: 241 SKLINFTKRRKVAEIISEIQQYQTQ 265
             L+NF KRRK+AEI+ EI+Q Q+ 
Sbjct: 181 -NLVNFEKRRKIAEILREIRQLQSN 204

Small GTP-binding proteins of the Ras superfamily function as molecular switches in fundamental events such as signal transduction, cytoskeleton dynamics and intracellular trafficking. Guanine-nucleotide-exchange factors (GEFs) positively regulate these GTP-binding proteins in response to a variety of signals. GEFs catalyze the dissociation of GDP from the inactive GTP-binding proteins. GTP can then bind and induce structural changes that allow interaction with effectors. Length = 237
>gnl|CDD|216025 pfam00617, RasGEF, RasGEF domain Back     alignment and domain information
>gnl|CDD|214539 smart00147, RasGEF, Guanine nucleotide exchange factor for Ras-like small GTPases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 272
smart00147242 RasGEF Guanine nucleotide exchange factor for Ras- 100.0
cd00155237 RasGEF Guanine nucleotide exchange factor for Ras- 100.0
PF00617188 RasGEF: RasGEF domain; InterPro: IPR001895 Ras pro 100.0
KOG3629|consensus 728 100.0
KOG3542|consensus 1283 100.0
KOG2378|consensus573 100.0
KOG3541|consensus477 99.95
KOG3417|consensus 840 99.93
KOG3417|consensus840 99.7
>smart00147 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases Back     alignment and domain information 
Probab=100.00  E-value=6e-54  Score=377.69  Aligned_cols=206  Identities=41%  Similarity=0.786  Sum_probs=198.0

Q ss_pred             ccccCHHHHHHHHHHHHHHHhcCCChhhhhhhhcccCCCCCCCh-hHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy3012          66 ILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSP-NLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTR  144 (272)
Q Consensus        66 ll~~~~~eiA~QLTl~d~~lf~~I~~~E~l~~~w~k~~~~~~~p-ni~~~i~~~n~ls~wv~~~Il~~~~~~~Ra~~i~~  144 (272)
                      +++++|.|||+|||++|+++|++|+|.||++..|++.+....+| ||.+++++||.++.||+.+||.++++++|++++++
T Consensus         1 ~l~~~~~eiA~QlTl~d~~~f~~I~~~El~~~~~~~~~~~~~~p~~i~~~~~~~n~is~wv~~~Il~~~~~~~R~~~i~~   80 (242)
T smart00147        1 LLLLDPKELAEQLTLLDFELFRKIDPSELLGSVWGKRSKKSPSPLNLERFIERFNEVSNWVATEILKQTTPKDRAELLSK   80 (242)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            46899999999999999999999999999999999887777788 99999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCChhHHHHHHHhhCchhhhhhHHHhhhCChhHHHHHHHHHhc--chhhHHHHHHHHhcCC-CCCccchh
Q psy3012         145 IIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDAREL--NGDHFKKYQEKLRNIN-PPCIPFFG  221 (272)
Q Consensus       145 ~I~iA~~~~~l~Nf~s~~aI~s~L~s~~I~RLk~tw~~l~~~~~~~~~~l~~l--~~~n~~~yr~~l~~~~-~pcIP~lg  221 (272)
                      ||+||.+|.++|||+|++||++||++++|.||+.||+.|+++.++.+++|+++  +++||++||+.++++. +|||||+|
T Consensus        81 fI~ia~~l~~l~Nfns~~aI~~~L~~~~I~RL~~tw~~l~~~~~~~~~~L~~l~s~~~n~~~yR~~l~~~~~~p~IP~lg  160 (242)
T smart00147       81 FIQVAKHCRELNNFNSLMAIVSALSSSPISRLKKTWEKLPSKYKKLFEELEELLSPERNFKNYREALSSCNLPPCVPFLG  160 (242)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHhCChHHhhhHHHHHHCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCccchH
Confidence            99999999999999999999999999999999999999999999999999998  5799999999999988 99999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHHHHHHHHHhhcCCCCCcCC
Q psy3012         222 MYLTNILHIEEGNPDFLPDSKLINFTKRRKVAEIISEIQQYQTQIFFLIQS  272 (272)
Q Consensus       222 ~~L~DL~~i~eg~~~~~~~~~lINf~K~r~i~~ii~~i~~~Q~~~Y~~~~~  272 (272)
                      ++|+|++++++|+|++.+ +|+|||.|+++++++|.+++.||+.+|+|.|.
T Consensus       161 ~~l~dl~~~~~~~~~~~~-~~~iNf~k~~~i~~~i~~~~~~Q~~~y~~~~~  210 (242)
T smart00147      161 VLLKDLTFIDEGNPDFLE-NGLVNFEKRRKIAEILREIRQLQSQPYNLRPN  210 (242)
T ss_pred             HHHHHHHHHHccCccccc-CCcccHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence            999999999999999986 49999999999999999999999999999873

>cd00155 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases Back     alignment and domain information
>PF00617 RasGEF: RasGEF domain; InterPro: IPR001895 Ras proteins are membrane-associated molecular switches that bind GTP and GDP and slowly hydrolyze GTP to GDP [] Back     alignment and domain information
>KOG3629|consensus Back     alignment and domain information
>KOG3542|consensus Back     alignment and domain information
>KOG2378|consensus Back     alignment and domain information
>KOG3541|consensus Back     alignment and domain information
>KOG3417|consensus Back     alignment and domain information
>KOG3417|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query272
3ksy_A1049 Crystal Structure Of The Histone Domain, Dh-Ph Unit 5e-84
1xdv_A847 Experimentally Phased Structure Of Human The Son Of 7e-84
1xd4_A852 Crystal Structure Of The Dh-Ph-Cat Module Of Son Of 8e-84
2ii0_A490 Crystal Structure Of Catalytic Domain Of Son Of Sev 2e-83
1nvu_S481 Structural Evidence For Feedback Activation By Rasg 2e-83
1xd2_C484 Crystal Structure Of A Ternary Ras:sos:ras*gdp Comp 2e-83
1bkd_S477 Complex Of Human H-Ras With Human Sos-1 Length = 47 2e-83
2ije_S240 Crystal Structure Of The Cdc25 Domain Of Rasgrf1 Le 5e-34
3qxl_A271 Crystal Structure Of The Cdc25 Domain From Ral-Spec 7e-21
4f7z_A999 Conformational Dynamics Of Exchange Protein Directl 8e-14
2byv_E999 Structure Of The Camp Responsive Exchange Factor Ep 8e-14
3cf6_E694 Structure Of Epac2 In Complex With Cyclic-Amp And R 8e-14
>pdb|3KSY|A Chain A, Crystal Structure Of The Histone Domain, Dh-Ph Unit, And Catalytic Unit Of The Ras Activator Son Of Sevenless (Sos) Length = 1049 Back     alignment and structure 
Iteration: 1

 Score =  307 bits (786), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 150/273 (54%), Positives = 205/273 (75%), Gaps = 6/273 (2%)
Query: 2   ILEKLKSFLLNEISGKSLRKWADIVLNLIQRKEL--DLEKEITFAFNNSPPPIEVHVP-I 58
           +L++++ F+   + GK+++KW + +  +IQRK++  D        F +SPP +E H+   
Sbjct: 710 LLQRMEEFI-GTVRGKAMKKWVESITKIIQRKKIARDNGPGHNITFQSSPPTVEWHISRP 768
Query: 59  NSIDEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHT 118
             I+ F++L  HP+EIARQLTLLE D +R+V+PSELVGSVWTK++K   SPNL+K+++HT
Sbjct: 769 GHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHT 828
Query: 119 TNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRF 178
           TN T W EK IVE EN +ER+A+++RIIE++ V Q+LNNFNGVL V SAM S+ VYRL  
Sbjct: 829 TNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDH 888
Query: 179 TFQALPTRLQKVLEDARELNGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFL 238
           TF+ +P+R +K+LE+A EL+ DH+KKY  KLR+INPPC+PFFG+YLTNIL  EEGNP+ L
Sbjct: 889 TFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVL 948
Query: 239 P--DSKLINFTKRRKVAEIISEIQQYQTQIFFL 269
                +LINF+KRRKVAEI  EIQQYQ Q + L
Sbjct: 949 KRHGKELINFSKRRKVAEITGEIQQYQNQPYCL 981
>pdb|1XDV|A Chain A, Experimentally Phased Structure Of Human The Son Of Sevenless Protein At 4.1 Ang. Length = 847 Back     alignment and structure
>pdb|1XD4|A Chain A, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of Sevenless (Sos) Length = 852 Back     alignment and structure
>pdb|2II0|A Chain A, Crystal Structure Of Catalytic Domain Of Son Of Sevenless (Rem-Cdc25) In The Absence Of Ras Length = 490 Back     alignment and structure
>pdb|1NVU|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-Specific Nucleotide Exchange Factor Sos Length = 481 Back     alignment and structure
>pdb|1XD2|C Chain C, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex Length = 484 Back     alignment and structure
>pdb|1BKD|S Chain S, Complex Of Human H-Ras With Human Sos-1 Length = 477 Back     alignment and structure
>pdb|2IJE|S Chain S, Crystal Structure Of The Cdc25 Domain Of Rasgrf1 Length = 240 Back     alignment and structure
>pdb|3QXL|A Chain A, Crystal Structure Of The Cdc25 Domain From Ral-Specific Guanine- Nucleotide Exchange Factor Ralgps1a Length = 271 Back     alignment and structure
>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly Activated By Camp Length = 999 Back     alignment and structure
>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In Its Auto-Inhibited State Length = 999 Back     alignment and structure
>pdb|3CF6|E Chain E, Structure Of Epac2 In Complex With Cyclic-Amp And Rap Length = 694 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query272
2ije_S240 Guanine nucleotide-releasing protein; rasgrf1, CDC 9e-80
3qxl_A271 RAS-specific guanine nucleotide-releasing factor; 6e-79
3ksy_A1049 SOS-1, SON of sevenless homolog 1; RAS, RAS activa 1e-77
2ii0_A490 SOS-1, SON of sevenless homolog 1; signaling prote 8e-77
3cf6_E694 RAP guanine nucleotide exchange factor (GEF) 4; EP 1e-70
2byv_E999 RAP guanine nucleotide exchange factor 4; EPAC2, C 2e-70
3t6a_A333 Breast cancer anti-estrogen resistance protein 3; 3e-20
3t6g_A331 SH2 domain-containing protein 3C; CDC25-homology d 6e-17
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus} Length = 240 Back     alignment and structure
 Score =  239 bits (613), Expect = 9e-80
 Identities = 68/198 (34%), Positives = 121/198 (61%), Gaps = 3/198 (1%)

Query: 70  HPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEKII 129
             +EIA QLTLL+   F+S+   E  G  W K  K E +P ++K  KH  + + ++   I
Sbjct: 5   SALEIAEQLTLLDHLVFKSIPYEEFFGQGWMKAEKYERTPYIMKTTKHFNHVSNFIASEI 64

Query: 130 VEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRFTFQALPTRLQK 189
           +  E+   R + + + + +  + + L+N+N VL +TS++  +A++RL+ T+  +  + + 
Sbjct: 65  IRNEDISARASAIEKWVAVADICRCLHNYNAVLEITSSINRSAIFRLKKTWLKVSKQTKS 124

Query: 190 VLEDAREL--NGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFLPDSKLINFT 247
           +L+  ++L  +   FK  +E LRN +PPC+P+ GMYLT+++ IEEG P++  D  L+NF+
Sbjct: 125 LLDKLQKLVSSDGRFKNLRESLRNCDPPCVPYLGMYLTDLVFIEEGTPNYTED-GLVNFS 183

Query: 248 KRRKVAEIISEIQQYQTQ 265
           K R ++ II EI+Q+Q  
Sbjct: 184 KMRMISHIIREIRQFQQT 201
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain homology, guanine-nucleotide exchange factor, S GTPase RAL subfamily; 2.24A {Homo sapiens} Length = 271 Back     alignment and structure
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A Length = 1049 Back     alignment and structure
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S Length = 490 Back     alignment and structure
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} Length = 694 Back     alignment and structure
>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP, cyclic nucleotide, regulation, auto-inhibition, CDC25 homology domain; 2.7A {Mus musculus} Length = 999 Back     alignment and structure
>3t6a_A Breast cancer anti-estrogen resistance protein 3; CDC25-homology domain, GTPase exchange factor, signaling Pro; HET: POG; 2.40A {Homo sapiens} Length = 333 Back     alignment and structure
>3t6g_A SH2 domain-containing protein 3C; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens} Length = 331 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query272
2ii0_A490 SOS-1, SON of sevenless homolog 1; signaling prote 100.0
2ije_S240 Guanine nucleotide-releasing protein; rasgrf1, CDC 100.0
3ksy_A1049 SOS-1, SON of sevenless homolog 1; RAS, RAS activa 100.0
3qxl_A271 RAS-specific guanine nucleotide-releasing factor; 100.0
4f7z_A999 RAP guanine nucleotide exchange factor 4; cyclic n 100.0
3cf6_E694 RAP guanine nucleotide exchange factor (GEF) 4; EP 100.0
3t6a_A333 Breast cancer anti-estrogen resistance protein 3; 99.8
3t6g_A331 SH2 domain-containing protein 3C; CDC25-homology d 99.8
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S Back     alignment and structure
Probab=100.00  E-value=4.5e-63  Score=474.29  Aligned_cols=269  Identities=55%  Similarity=0.954  Sum_probs=242.4

Q ss_pred             HHHHHHHHhhhhcCCchHHHHHHHHHHHHHHhhhhhh--hhhcccCCCCCCCccccCCCCCC-CcccccccCHHHHHHHH
Q psy3012           2 ILEKLKSFLLNEISGKSLRKWADIVLNLIQRKELDLE--KEITFAFNNSPPPIEVHVPINSI-DEFNILIAHPVEIARQL   78 (272)
Q Consensus         2 ll~~l~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~p~~i~~~~~~~~~-~~~~ll~~~~~eiA~QL   78 (272)
                      ++.+|.+|++. +.|+.|+++++.+.++++++....+  .....++..+||++++.+..++. +.+++++++|.|||+||
T Consensus       151 ll~~L~~F~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ll~~~p~elA~QL  229 (490)
T 2ii0_A          151 LLQRMEEFIGT-VRGKAMKKWVESITKIIQRKKIARDNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQL  229 (490)
T ss_dssp             HHHHHHHHHTT-CCCTTTHHHHHHHHHHHHHHHHC----------CCSCCCCCCCCSSCTTCGGGCCTTTSCHHHHHHHH
T ss_pred             HHHHHHHHHHh-ccchhHHHHHHHHHHHHHHHHhcccCCCCcccccCCCCCccccccCCCCCcccchhhccCHHHHHHHH
Confidence            67899999984 6788899999999999988764322  22334566777888777655554 67899999999999999


Q ss_pred             HHHHHHHhcCCChhhhhhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhhcCCh
Q psy3012          79 TLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNF  158 (272)
Q Consensus        79 Tl~d~~lf~~I~~~E~l~~~w~k~~~~~~~pni~~~i~~~n~ls~wv~~~Il~~~~~~~Ra~~i~~~I~iA~~~~~l~Nf  158 (272)
                      |++|+++|++|.|.||++++|+++++...+||+.+++++||.+++||+++||.+.++++||++|++||+||.+|+++|||
T Consensus       230 Tlid~~lf~~I~~~E~l~~~w~~~~~~~~~pnl~~~i~~~n~ls~wV~~~Il~~~~~~~Ra~~i~kfI~iA~~c~~l~Nf  309 (490)
T 2ii0_A          230 TLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNF  309 (490)
T ss_dssp             HHHHHHHHHHCCGGGTGGGGGGSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTTBH
T ss_pred             HHHHHHHHHCCCHHHHHHHHhcCCCcCCCCccHHHHHHHHhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCH
Confidence            99999999999999999999998876667899999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhCchhhhhhHHHhhhCChhHHHHHHHHHhcchhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHhcCCCCC
Q psy3012         159 NGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDARELNGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFL  238 (272)
Q Consensus       159 ~s~~aI~s~L~s~~I~RLk~tw~~l~~~~~~~~~~l~~l~~~n~~~yr~~l~~~~~pcIP~lg~~L~DL~~i~eg~~~~~  238 (272)
                      ||+|||++||++++|+||++||+.|+.+.++.++++..++++||++||+.++++.+|||||+|+||+||+|+++|||+++
T Consensus       310 nsl~AIisgL~s~~I~RLk~TW~~v~~~~~~~~~~l~~l~~~n~~~yR~~l~~~~~p~IPflg~~L~DL~~i~egnp~~~  389 (490)
T 2ii0_A          310 NGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVL  389 (490)
T ss_dssp             HHHHHHHHHHTSHHHHTCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSCBCCCHHHHHHHHHHHHTSCSEE
T ss_pred             HHHHHHHHHhccchhhhHHHHHHHCCHHHHHHHHHHHHhchHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHhcCCccc
Confidence            99999999999999999999999999999999999998888999999999999999999999999999999999999999


Q ss_pred             CCCC--cccHHHHHHHHHHHHHHHHhhcCCCCCcC
Q psy3012         239 PDSK--LINFTKRRKVAEIISEIQQYQTQIFFLIQ  271 (272)
Q Consensus       239 ~~~~--lINf~K~r~i~~ii~~i~~~Q~~~Y~~~~  271 (272)
                      +++|  +|||.|+|+++++|.+|++||+.||+|.+
T Consensus       390 ~~~~~~lINf~K~r~~~~ii~~i~~~Q~~~Y~~~~  424 (490)
T 2ii0_A          390 KRHGKELINFSKRRKVAEITGEIQQYQNQPYCLRV  424 (490)
T ss_dssp             EETTEEEEEHHHHHHHHHHHHHHGGGSSCCCSCCC
T ss_pred             CCCCCeEEcHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence            6533  99999999999999999999999999986
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus} Back     alignment and structure
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A Back     alignment and structure
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain homology, guanine-nucleotide exchange factor, S GTPase RAL subfamily; 2.24A {Homo sapiens} Back     alignment and structure
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E Back     alignment and structure
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} Back     alignment and structure
>3t6a_A Breast cancer anti-estrogen resistance protein 3; CDC25-homology domain, GTPase exchange factor, signaling Pro; HET: POG; 2.40A {Homo sapiens} Back     alignment and structure
>3t6g_A SH2 domain-containing protein 3C; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 272
d1nvus_481 a.117.1.1 (S:) Son of sevenless protein homolog 1 2e-68
>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 481 Back     information, alignment and structure

class: All alpha proteins
fold: Ras GEF
superfamily: Ras GEF
family: Ras GEF
domain: Son of sevenless protein homolog 1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  216 bits (552), Expect = 2e-68
 Identities = 148/269 (55%), Positives = 203/269 (75%), Gaps = 6/269 (2%)

Query: 2   ILEKLKSFLLNEISGKSLRKWADIVLNLIQRKELDLE--KEITFAFNNSPPPIEVHVPIN 59
           +L++++ F+   + GK+++KW + +  +IQRK++  +        F +SPP +E H+   
Sbjct: 145 LLQRMEEFI-GTVRGKAMKKWVESITKIIQRKKIARDNGPGHNITFQSSPPTVEWHISRP 203

Query: 60  S-IDEFNILIAHPVEIARQLTLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHT 118
             I+ F++L  HP+EIARQLTLLE D +R+V+PSELVGSVWTK++K   SPNL+K+++HT
Sbjct: 204 GHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHT 263

Query: 119 TNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNFNGVLAVTSAMGSAAVYRLRF 178
           TN T W EK IVE EN +ER+A+++RIIE++ V Q+LNNFNGVL V SAM S+ VYRL  
Sbjct: 264 TNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDH 323

Query: 179 TFQALPTRLQKVLEDARELNGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFL 238
           TF+ +P+R +K+LE+A EL+ DH+KKY  KLR+INPPC+PFFG+YLTNIL  EEGNP+ L
Sbjct: 324 TFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVL 383

Query: 239 PDS--KLINFTKRRKVAEIISEIQQYQTQ 265
                +LINF+KRRKVAEI  EIQQYQ Q
Sbjct: 384 KRHGKELINFSKRRKVAEITGEIQQYQNQ 412

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query272
d1nvus_481 Son of sevenless protein homolog 1 (sos-1) {Human 100.0
>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Ras GEF
superfamily: Ras GEF
family: Ras GEF
domain: Son of sevenless protein homolog 1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-59  Score=443.44  Aligned_cols=269  Identities=55%  Similarity=0.958  Sum_probs=238.7

Q ss_pred             HHHHHHHHhhhhcCCchHHHHHHHHHHHHHHhhhhhhh--hhcccCCCCCCCccccCCCCCC-CcccccccCHHHHHHHH
Q psy3012           2 ILEKLKSFLLNEISGKSLRKWADIVLNLIQRKELDLEK--EITFAFNNSPPPIEVHVPINSI-DEFNILIAHPVEIARQL   78 (272)
Q Consensus         2 ll~~l~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~p~~i~~~~~~~~~-~~~~ll~~~~~eiA~QL   78 (272)
                      ++.++.+|+. .+.+..+.+.++.+.+.++++......  ....+....||+++.....++. ..+++++++|.|||+||
T Consensus       145 ll~~l~~f~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~eiA~QL  223 (481)
T d1nvus_         145 LLQRMEEFIG-TVRGKAMKKWVESITKIIQRKKIARDNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQL  223 (481)
T ss_dssp             HHHHHHHHHH-HCCSTTTHHHHHHHHHHHHHHHHC------CCCCCSSCCCCCCCCSSCTTCTTTCCTTTSCHHHHHHHH
T ss_pred             HHHHHHHHHH-HHhhhhhHHHHHHHHHHHHHHHhhhccCccccccccCCCCccccccCCCCCCCCcccccCCHHHHHHHH
Confidence            5788999998 566777888888899988887654321  1122223334545544443433 67899999999999999


Q ss_pred             HHHHHHHhcCCChhhhhhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhhcCCh
Q psy3012          79 TLLEFDYFRSVKPSELVGSVWTKKNKAEYSPNLIKIMKHTTNFTRWLEKIIVEAENFDERLAIMTRIIEMMIVLQKLNNF  158 (272)
Q Consensus        79 Tl~d~~lf~~I~~~E~l~~~w~k~~~~~~~pni~~~i~~~n~ls~wv~~~Il~~~~~~~Ra~~i~~~I~iA~~~~~l~Nf  158 (272)
                      |++|+++|.+|+|.||++++|+++++...+|||.+++++||.+++||+++||.++++++||++|++||+||.+|+++|||
T Consensus       224 Tl~~~~~f~~I~~~E~l~~~~~~~~~~~~~pni~~~~~~~n~ls~wv~~~Il~~~~~~~R~~~i~~fI~ia~~~~~l~Nf  303 (481)
T d1nvus_         224 TLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNF  303 (481)
T ss_dssp             HHHHHHHHHTCCGGGTGGGGGGSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTTBH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHcccCCCCCCCcHHHHHHHHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCH
Confidence            99999999999999999999999887778999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhCchhhhhhHHHhhhCChhHHHHHHHHHhcchhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHhcCCCCC
Q psy3012         159 NGVLAVTSAMGSAAVYRLRFTFQALPTRLQKVLEDARELNGDHFKKYQEKLRNINPPCIPFFGMYLTNILHIEEGNPDFL  238 (272)
Q Consensus       159 ~s~~aI~s~L~s~~I~RLk~tw~~l~~~~~~~~~~l~~l~~~n~~~yr~~l~~~~~pcIP~lg~~L~DL~~i~eg~~~~~  238 (272)
                      ||++||++||++++|+||++||+.|+.+.++.++++++++++||++||+.+.++.+|||||+|+||+||+++++|||+++
T Consensus       304 ~s~~aI~~~L~~~~I~RL~~tw~~l~~~~~~~~~~l~~l~~~n~~~yr~~l~~~~~p~IP~lg~~l~Dl~~~~~gn~~~~  383 (481)
T d1nvus_         304 NGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVL  383 (481)
T ss_dssp             HHHHHHHHHHTSHHHHTCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCBCCSHHHHHHHHHHHHSSCSEE
T ss_pred             HHHHHHHHHHccCcchHHHHHHHhCCHHHHHHHHHHHHhcchhHHHHHHHHhcCCCCeEeeeccHHHHHHHHHhcCCccc
Confidence            99999999999999999999999999999999999999988999999999999999999999999999999999999987


Q ss_pred             CC--CCcccHHHHHHHHHHHHHHHHhhcCCCCCcC
Q psy3012         239 PD--SKLINFTKRRKVAEIISEIQQYQTQIFFLIQ  271 (272)
Q Consensus       239 ~~--~~lINf~K~r~i~~ii~~i~~~Q~~~Y~~~~  271 (272)
                      +.  +|+|||.|+++++++|.+|++||+.+|+|.|
T Consensus       384 ~~~~~~lINf~K~~~i~~~i~~i~~~Q~~~y~~~~  418 (481)
T d1nvus_         384 KRHGKELINFSKRRKVAEITGEIQQYQNQPYCLRV  418 (481)
T ss_dssp             EETTEEEEEHHHHHHHHHHHHHHHHHHSCCCCCCC
T ss_pred             cCCCCceEcHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence            52  4799999999999999999999999999987